XM_017399031.1

Resource Type: 
Polypeptide
Name: 
XM_017399031.1
Identifier: 
XM_017399031.1-protein
Sequence: 
MWYLCVFYHRLLDYRKPEVESLAELFGAFDDDPHGQQHSLEWKLPEHHHP
DSPFHFVNLPSEDIARSVANRSMLVKGLFELWGEGNSYEELEESIKGYPE
ERKLPYLNSDSTFRISIDTFGKVMSFTEHNERIRGLSYIPFKGRVNLKNP
EHNFWIMETDDYGSHNGLPPVVQKRIFFGREVGAADRKLLPTYELKSRNY
LGPTAMDAEVAFLMANQAKATHGKLVYDPFVGTGSILVAAAHFGAMTMGA
DIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLSEVF
DAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDEKRTNHIPSTGAYSL
AECVHDLLDLAAKMLVMDGRLVYFYPVVRDDGSSSPSFPEHPCFKLIASC
EQILSFRYSRVLLTMVKIKPYTDDIAESARLKHMDFKENHLKWLEEGNLH
SAVFSPADHNSSSGDDGNCGKEVKPKYRGKYV
Sequence Length: 
482
Sequence Checksum: 
c96765ecad071420ed27fa5d08f66d2d
View location in JBrowse: 
DCARv2_Chr6:19366589..19371924-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017399031.1, derives from mRNA, XM_017399031.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017399031.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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BLAST of XM_017399031.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BQX5 (UPF0020 domain-containing protein {ECO:0000259|Pfam:PF01170})

HSP 1 Score: 847.425 bits (2188), Expect = 0.000e+0
Identity = 403/488 (82.58%), Postives = 448/488 (91.80%), Query Frame = 0
 
Query:    1 MWYLCVFYHRLLDYRKPEVESLAELFGAF-----DDDPHGQQHSLEWKLPEHHHPDSPFHFVNLPSEDIARSVANRSMLVKGLFELWGEGNSYEELEESIKGYPEERKLPYLNSDSTFRISIDTFGKVMSFTEHNERIRGLSYIPFKGRVNLKNPEHNFWIMETDDYGSHNGLPPVVQKRIFFGREVGAADRKLLPTYELKSRNYLGPTAMDAEVAFLMANQAKATHGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLSEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDEKRTNHIPSTGAYSLAECVHDLLDLAAKMLVMDGRLVYFYPVVRDDGSSSPSFPEHPCFKLIASCEQILSFRYSRVLLTMVKIKPYTDDIAESARLKHMDFKENHLKWLEEGNLHSAVFSPADHNSSSGDDGNCG-KEVKPKYRGKYV 482
            MWYLCVFYHRLLDYRKPEVESLAELFGAF     D++ + Q+ SLEW+LP+ HHPDSPFHFVNLPSE IARS+ANRS+LVKG++ELWGEG+SYEELEE++KGYP+ERKLPYL S+STF+I++D+FGKV+SF E N+RIRG SYIPFKGRVNL+NPEH FW+METDDYGS+NGLPPVVQ+RIFFGREVGAADRKLLPTY+LKSR YLGPTAMDAE+AFLMANQA  T GKLV+DPFVGTGSIL+AAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGL EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPD+KRT+HIPST AYSL ECVHDLLDLAA+MLVM GRLV+FYPV+R+D S   +FPEHPCFKL+ASCEQILSFRYSRVLLTMVK   YT++IAESAR+KH++FKENHLKWLE+GNLHSAVFSPAD     G+ G+   KE KPKYRGKYV
Sbjct:    1 MWYLCVFYHRLLDYRKPEVESLAELFGAFKDSNSDNNGNPQKKSLEWRLPQDHHPDSPFHFVNLPSEVIARSIANRSILVKGIYELWGEGSSYEELEEAVKGYPDERKLPYLTSESTFKITVDSFGKVISFQEQNDRIRGFSYIPFKGRVNLRNPEHKFWLMETDDYGSNNGLPPVVQRRIFFGREVGAADRKLLPTYQLKSRTYLGPTAMDAEMAFLMANQALVTPGKLVFDPFVGTGSILIAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDDKRTDHIPSTAAYSLVECVHDLLDLAARMLVMGGRLVFFYPVLREDDSIDSNFPEHPCFKLVASCEQILSFRYSRVLLTMVKTGSYTEEIAESARIKHLEFKENHLKWLEDGNLHSAVFSPAD--PQLGETGDTKFKESKPKYRGKYV 486
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BLAST of XM_017399031.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BJI0 (UPF0020 domain-containing protein {ECO:0000259|Pfam:PF01170})

HSP 1 Score: 837.795 bits (2163), Expect = 0.000e+0
Identity = 394/487 (80.90%), Postives = 442/487 (90.76%), Query Frame = 0
 
Query:    1 MWYLCVFYHRLLDYRKPEVESLAELFGAF-----DDDPHGQQHSLEWKLPEHHHPDSPFHFVNLPSEDIARSVANRSMLVKGLFELWGEGNSYEELEESIKGYPEERKLPYLNSDSTFRISIDTFGKVMSFTEHNERIRGLSYIPFKGRVNLKNPEHNFWIMETDDYGSHNGLPPVVQKRIFFGREVGAADRKLLPTYELKSRNYLGPTAMDAEVAFLMANQAKATHGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLSEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDEKRTNHIPSTGAYSLAECVHDLLDLAAKMLVMDGRLVYFYPVVRDDGSSSPSFPEHPCFKLIASCEQILSFRYSRVLLTMVKIKPYTDDIAESARLKHMDFKENHLKWLEEGNLHSAVFSPADHNSSSGDDGNCGKEVKPKYRGKYV 482
            MWYLCVFYHRLLDYRKPE ESLAELFG F     D++ + ++ SLEW+LP+HHHPDSPFHFVNLPSEDIARS+A+RS+LVKG++ELWGEG+SYEELEE+IKGYP+ERKLP+L S+STF+I++D+FGKV+SF E N+RI+G  YIPFKGRVNL+NP+H FW+METDDYGS+NGLPPVVQ+RIFFGREVGAADRKLLPTY+LKSR YLGPTAMDAE+AFLMANQA  T GKLV+DPFVGTGSIL+AAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGL EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPD+KRT+HIPST  YSL ECVHDLLD+AA+MLVM GRLV+FYPV+R+D S   +FPEHPCFK +A+CEQILSFRYSRVLLTMVK  PYT +IAESAR+KH++FKENHLKWLE+GNLHSAVFSPAD       D    KE KPKYRGKYV
Sbjct:    1 MWYLCVFYHRLLDYRKPEFESLAELFGTFKDSNSDNNGNPEKKSLEWRLPQHHHPDSPFHFVNLPSEDIARSIASRSILVKGIYELWGEGSSYEELEEAIKGYPDERKLPFLTSESTFKITVDSFGKVISFQEQNDRIQGFFYIPFKGRVNLRNPDHKFWLMETDDYGSNNGLPPVVQRRIFFGREVGAADRKLLPTYQLKSRTYLGPTAMDAEMAFLMANQALVTPGKLVFDPFVGTGSILIAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDDKRTDHIPSTAPYSLVECVHDLLDVAARMLVMGGRLVFFYPVLREDDSIDANFPEHPCFKSVAACEQILSFRYSRVLLTMVKTGPYTQEIAESARIKHLEFKENHLKWLEDGNLHSAVFSPADPQLGGTGDTKDIKESKPKYRGKYV 487
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BLAST of XM_017399031.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7Z0G2 ((tRNA (Guanine(10)-N2)-methyltransferase homolog {ECO:0000313|RefSeq:XP_010244011.1}))

HSP 1 Score: 832.402 bits (2149), Expect = 0.000e+0
Identity = 386/482 (80.08%), Postives = 436/482 (90.46%), Query Frame = 0
 
Query:    1 MWYLCVFYHRLLDYRKPEVESLAELFGAFDDDPHGQQHSLEWKLPEHHHPDSPFHFVNLPSEDIARSVANRSMLVKGLFELWGEGNSYEELEESIKGYPEERKLPYLNSDSTFRISIDTFGKVMSFTEHNERIRGLSYIPFKGRVNLKNPEHNFWIMETDDYGSHNGLPPVVQKRIFFGREVGAADRKLLPTYELKSRNYLGPTAMDAEVAFLMANQAKATHGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLSEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDEKRTNHIPSTGAYSLAECVHDLLDLAAKMLVMDGRLVYFYPVVRDDGSSSPSFPEHPCFKLIASCEQILSFRYSRVLLTMVKIKPYTDDIAESARLKHMDFKENHLKWLEEGNLHSAVFSPADHNSSSGDDGNCGKEVKPKYRGKYV 482
            MWYLCVFYHRLLDYR+PEVE+LAELFGAF +D      SLEWKLPE HHPDSPFHFVNLPSEDIARS+ANRS+LVKG++ELWG+GNSY+ELEE+IKGYP+ERKLPYL S+STF+I +D+FGKVM+F E NERI+GL+YIPFKG+VNL+NP+H FW++ETDDYGS+NGLPPVVQ+RI+FGREVGAADRKLLPTY+LKSRNYLGPTAMDAE+AFLMANQ  A  GKLVYDPFVGTGSIL+AAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNF QYGL MPISLLRADNNLPPWR GL EVFDAIICDPPYGVRAGGRKSGGRKLLKG VGPYTVPD+KR++HIPST  YSL EC+HDLLDLAA+MLVM GRLV+FYPV+R+DGS+   +PEHPCF LIAS EQILS RYSRVLLTMVK  PY++++AESA+ KH++FKENHLKWLE+GNL SAVF+PAD  +   +D    KE KPKYRGKYV
Sbjct:    1 MWYLCVFYHRLLDYRRPEVEALAELFGAFGEDSEISHRSLEWKLPESHHPDSPFHFVNLPSEDIARSIANRSILVKGIYELWGQGNSYKELEEAIKGYPDERKLPYLASESTFKIIVDSFGKVMTFQEQNERIQGLTYIPFKGKVNLRNPDHKFWLIETDDYGSNNGLPPVVQRRIYFGREVGAADRKLLPTYQLKSRNYLGPTAMDAEMAFLMANQGLAMPGKLVYDPFVGTGSILIAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFNQYGLAMPISLLRADNNLPPWRTGLREVFDAIICDPPYGVRAGGRKSGGRKLLKGAVGPYTVPDDKRSDHIPSTAPYSLVECMHDLLDLAARMLVMGGRLVFFYPVLREDGSTDTHYPEHPCFTLIASSEQILSLRYSRVLLTMVKTGPYSEEVAESAKKKHLEFKENHLKWLEDGNLRSAVFNPADTQTGFAEDSQLNKESKPKYRGKYV 482
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BLAST of XM_017399031.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835DLH4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8404389.1}))

HSP 1 Score: 831.632 bits (2147), Expect = 0.000e+0
Identity = 392/499 (78.56%), Postives = 441/499 (88.38%), Query Frame = 0
 
Query:    1 MWYLCVFYHRLLDYRKPEVESLAELFGAFDDDPHGQQHSLEWKLPEHHHPDSPFHFVNLPSEDIARSVANRSMLVKGLFELWGEGNSYEELEESIKGYPEERKLPYLNSDSTFRISIDTFGKVMSFTEHNERIRGLSYIPFK-----------------GRVNLKNPEHNFWIMETDDYGSHNGLPPVVQKRIFFGREVGAADRKLLPTYELKSRNYLGPTAMDAEVAFLMANQAKATHGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLSEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDEKRTNHIPSTGAYSLAECVHDLLDLAAKMLVMDGRLVYFYPVVRDDGSSSPSFPEHPCFKLIASCEQILSFRYSRVLLTMVKIKPYTDDIAESARLKHMDFKENHLKWLEEGNLHSAVFSPADHNSSSGDDGNCGKEVKPKYRGKYV 482
            MWYLCVF+HRLLDYR+PEVE+LAELFGAF ++    + SLEW+LPEHHH DSPFHFV+LPS+D+AR +ANRS+LVKG++ELWGEG+SYEELEE+IKGYP+ERKLPYL S+STFRI++D+FGKV+SF E NERI+GL+YIPFK                 GRVNL+NP+H FW+METDDYGS+NGLPPV+QKRIFFGREVGAADRKLLPTY+LKSRNYLGPTAMDAE+AFLMANQA  T GKLVYDPFVGTGSIL+AAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGL EVFDAIICDPPYGVRAGGRKSGGRKLLKG VGPYTVPD KRT+HIPST  YSLAECVHDLLDLAA+MLVM+GRLV+FYPV+R+DGS+  +FPEHPCF L+A CEQILS RYSRVLLTMVK  PY++++AESA  KH++FKENHLKWLE+GNLHSAVFSPAD       D    K+ KPKYRGKYV
Sbjct:    1 MWYLCVFFHRLLDYRRPEVEALAELFGAFGEENGDIKRSLEWRLPEHHHHDSPFHFVDLPSDDVARRIANRSILVKGIYELWGEGSSYEELEEAIKGYPDERKLPYLISESTFRITVDSFGKVISFQEQNERIQGLAYIPFKFSILSVVVLHLKSVYFQGRVNLRNPDHRFWLMETDDYGSNNGLPPVLQKRIFFGREVGAADRKLLPTYQLKSRNYLGPTAMDAEMAFLMANQALTTPGKLVYDPFVGTGSILIAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGTVGPYTVPDNKRTDHIPSTAPYSLAECVHDLLDLAARMLVMEGRLVFFYPVLREDGSTDTNFPEHPCFTLVAVCEQILSLRYSRVLLTMVKTDPYSEEVAESAMKKHLEFKENHLKWLEDGNLHSAVFSPADPQMEMAGDSKFNKDSKPKYRGKYV 499
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BLAST of XM_017399031.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5C659 ((tRNA guanosine-2'-O-methyltransferase, TRM {ECO:0000313|EMBL:PON56556.1}))

HSP 1 Score: 830.476 bits (2144), Expect = 0.000e+0
Identity = 389/487 (79.88%), Postives = 439/487 (90.14%), Query Frame = 0
 
Query:    1 MWYLCVFYHRLLDYRKPEVESLAELFGAFDDDPHGQQH-----SLEWKLPEHHHPDSPFHFVNLPSEDIARSVANRSMLVKGLFELWGEGNSYEELEESIKGYPEERKLPYLNSDSTFRISIDTFGKVMSFTEHNERIRGLSYIPFKGRVNLKNPEHNFWIMETDDYGSHNGLPPVVQKRIFFGREVGAADRKLLPTYELKSRNYLGPTAMDAEVAFLMANQAKATHGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLSEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDEKRTNHIPSTGAYSLAECVHDLLDLAAKMLVMDGRLVYFYPVVRDDGSSSPSFPEHPCFKLIASCEQILSFRYSRVLLTMVKIKPYTDDIAESARLKHMDFKENHLKWLEEGNLHSAVFSPADHNSSSGDDGNCGKEVKPKYRGKYV 482
            MWYLCVFYHRLLDYRK EVESLA+LFGAFD +   QQ+     SLEW+LP+HHHPDSPFHFVNLPSED+AR +ANRS+LVKG++ELWGEG+SYEELEESIK YP+ERKLPYL S STF+I++DTFGKV+S  + N+RI+GLSYIPF GRVNLKNP+H FW+METDDYGS+NGLPP+VQ+RIFFGRE+G ADRKL+PTY+LKSR YLGPTAMDAE+AFLMANQA A+ GKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPI+LLRADNNLPPWRPGL+EVFDAII DPPYGVRAGGRKSGGRKLLKG V PY VPD+KRT+HIPST  YSL ECVHDLLDLAA+M++M GRLV+FYPV+R+D      FPEH CFKLIAS EQILS RYSRVLLTMVKI PYT++IA++AR+KHM+F+ENHLKWLE+GNLHSAVFSPAD NS++  +G   KE KPKYRGKYV
Sbjct:    1 MWYLCVFYHRLLDYRKSEVESLAQLFGAFDPEGLDQQNPKGHCSLEWRLPQHHHPDSPFHFVNLPSEDVARKIANRSILVKGMYELWGEGDSYEELEESIKSYPDERKLPYLESGSTFKINVDTFGKVLSLQDQNQRIQGLSYIPFNGRVNLKNPDHKFWLMETDDYGSNNGLPPIVQRRIFFGREIGGADRKLIPTYQLKSRTYLGPTAMDAEMAFLMANQALASPGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPIALLRADNNLPPWRPGLNEVFDAIISDPPYGVRAGGRKSGGRKLLKGAVSPYVVPDDKRTDHIPSTAPYSLVECVHDLLDLAARMIIMGGRLVFFYPVLREDDYVENQFPEHQCFKLIASSEQILSSRYSRVLLTMVKISPYTEEIADAARIKHMEFRENHLKWLEDGNLHSAVFSPADSNSNASGEGKLSKESKPKYRGKYV 487
[Close]
BLAST of XM_017399031.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EWE0 (UPF0020 domain-containing protein {ECO:0000259|Pfam:PF01170})

HSP 1 Score: 828.935 bits (2140), Expect = 0.000e+0
Identity = 386/494 (78.14%), Postives = 440/494 (89.07%), Query Frame = 0
 
Query:    1 MWYLCVFYHRLLDYRKPEVESLAELFGAF------------DDDPHGQQHSLEWKLPEHHHPDSPFHFVNLPSEDIARSVANRSMLVKGLFELWGEGNSYEELEESIKGYPEERKLPYLNSDSTFRISIDTFGKVMSFTEHNERIRGLSYIPFKGRVNLKNPEHNFWIMETDDYGSHNGLPPVVQKRIFFGREVGAADRKLLPTYELKSRNYLGPTAMDAEVAFLMANQAKATHGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLSEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDEKRTNHIPSTGAYSLAECVHDLLDLAAKMLVMDGRLVYFYPVVRDDGSSSPSFPEHPCFKLIASCEQILSFRYSRVLLTMVKIKPYTDDIAESARLKHMDFKENHLKWLEEGNLHSAVFSPADHNSSSGDDGNCGKEVKPKYRGKYV 482
            MWYLCVFYHRLLDYRKPEVESLAELFGAF            +++ + + +SL+W+LP+HHHPDSPFHFVNLPS+DIAR +ANRS+LVKG++ELWGEG++Y+ELEE+IK YP+ERKLPYL S+STF+I++D+FGKV+SF E N+RIRG SYIPFKGRVNL+NP+H FW+METDDYG +NGLPPVVQ+R+FFGREVG ADRKLLPTY+LKSR YLGPTAMDAE+AFLMANQA    GKLVYDPFVGTGSIL+ AAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMP+ LLRADNNLPPWRPGL EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPD+KRTNHIPST  YSL ECVHDLLD+AAKMLVM GRLV+FYP++R+D +   +FPEHPCFKL+ASCEQILSFRYSRVLLTMVKI PYT+++AE+AR+KH++FKENHLKWLEEGNL SAVFSP D +     D    K+ KPKYRGKYV
Sbjct:    1 MWYLCVFYHRLLDYRKPEVESLAELFGAFNLSDSDSDNRHVENNGNPENNSLQWRLPQHHHPDSPFHFVNLPSDDIARKIANRSILVKGVYELWGEGSTYKELEEAIKAYPDERKLPYLTSESTFKITVDSFGKVISFEEQNDRIRGFSYIPFKGRVNLRNPDHKFWLMETDDYGVNNGLPPVVQRRMFFGREVGTADRKLLPTYQLKSRTYLGPTAMDAEMAFLMANQALVAPGKLVYDPFVGTGSILIGAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPLGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDDKRTNHIPSTAPYSLVECVHDLLDVAAKMLVMGGRLVFFYPILREDDTIDTNFPEHPCFKLVASCEQILSFRYSRVLLTMVKIGPYTEEVAETARIKHLEFKENHLKWLEEGNLRSAVFSPLDTHLGGAGDAKPSKDSKPKYRGKYV 494
[Close]
BLAST of XM_017399031.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5AKU7 (UPF0020 domain-containing protein {ECO:0000259|Pfam:PF01170})

HSP 1 Score: 827.009 bits (2135), Expect = 0.000e+0
Identity = 395/482 (81.95%), Postives = 439/482 (91.08%), Query Frame = 0
 
Query:    1 MWYLCVFYHRLLDYRKPEVESLAELFGAFDDDPHGQQHSLEWKLPEHHHPDSPFHFVNLPSEDIARSVANRSMLVKGLFELWGEGNSYEELEESIKGYPEERKLPYLNSDSTFRISIDTFGKVMSFTEHNERIRGLSYIPFKGRVNLKNPEHNFWIMETDDYGSHNGLPPVVQKRIFFGREVGAADRKLLPTYELKSRNYLGPTAMDAEVAFLMANQAKATHGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLSEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDEKRTNHIPSTGAYSLAECVHDLLDLAAKMLVMDGRLVYFYPVVRDDGSSSPSFPEHPCFKLIASCEQILSFRYSRVLLTMVKIKPYTDDIAESARLKHMDFKENHLKWLEEGNLHSAVFSPADHNSSSGDDGNCGKEVKPKYRGKYV 482
            MWYLCVFYHRLLDYRK EVESLA LFG  +D       +L+WKLP+HHHPDSPFHFV LPSED+AR++ANRS+LVKG++ELWGEG+SYEELEE+I+ YP+ERKLPYL ++STF+I++D+FGKV+SF E N+RI+GL+YIPFKGRVNLKNPEH FW++ETDDYGS+NGLPPVVQKRIFFGREVGAADRKLLPTY+LKSR YLGPTAMDAE+AFLMANQA AT GKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQY LPMPISLLRADNNLPPWRPGL EVFDAIICDPPYGVRAGGRKSGGRKLLKGV+GPYTVPD+KRT+HIPST AYSLAECVHDLLD+AAKMLVM GRLVYFYPV+R+D S+   FPEHPCFKLIA+CEQILS RYSRVLLTMVKI PYT++IAE+ARLKH++FKENHLKWLEEGNLH+AVFS AD       D    K+ KPKYRGKYV
Sbjct:    1 MWYLCVFYHRLLDYRKAEVESLAHLFGVLEDG-----SALQWKLPQHHHPDSPFHFVYLPSEDVARNIANRSILVKGIYELWGEGSSYEELEEAIRSYPDERKLPYLAAESTFKITVDSFGKVISFQEQNDRIQGLTYIPFKGRVNLKNPEHKFWLIETDDYGSNNGLPPVVQKRIFFGREVGAADRKLLPTYQLKSRTYLGPTAMDAEMAFLMANQALATAGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYHLPMPISLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVIGPYTVPDDKRTDHIPSTAAYSLAECVHDLLDVAAKMLVMGGRLVYFYPVLREDDSTETHFPEHPCFKLIATCEQILSLRYSRVLLTMVKIGPYTEEIAETARLKHLEFKENHLKWLEEGNLHAAVFSSADPQLGDAGDSKSSKDSKPKYRGKYV 477
[Close]
BLAST of XM_017399031.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WB94 ((tRNA (Guanine(10)-N2)-methyltransferase homolog {ECO:0000313|RefSeq:XP_027112489.1}))

HSP 1 Score: 825.083 bits (2130), Expect = 0.000e+0
Identity = 383/482 (79.46%), Postives = 435/482 (90.25%), Query Frame = 0
 
Query:    1 MWYLCVFYHRLLDYRKPEVESLAELFGAFDDDPHGQQHSLEWKLPEHHHPDSPFHFVNLPSEDIARSVANRSMLVKGLFELWGEGNSYEELEESIKGYPEERKLPYLNSDSTFRISIDTFGKVMSFTEHNERIRGLSYIPFKGRVNLKNPEHNFWIMETDDYGSHNGLPPVVQKRIFFGREVGAADRKLLPTYELKSRNYLGPTAMDAEVAFLMANQAKATHGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLSEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDEKRTNHIPSTGAYSLAECVHDLLDLAAKMLVMDGRLVYFYPVVRDDGSSSPSFPEHPCFKLIASCEQILSFRYSRVLLTMVKIKPYTDDIAESARLKHMDFKENHLKWLEEGNLHSAVFSPADHNSSSGDDGNCGKEVKPKYRGKYV 482
            MWYLCVFYHRLLDYR+PEVESLA+LFGAFD +   Q  SLEW+LPE HHPDSPFHFVNLPSE IA ++ANRS+LVKG++ELWGEG+S+EELEE+IK  P+E+KLPYL S STF+I++D+FGKV+SF E N+RI+ LSYIPFKG+VNL +P+H FW+METD+YGS+NGLPP+V +RIFFGRE+GAADRKLLPTY+LKSR YLGPTAMDAE+AFLMANQA+A  GKLVYDPFVGTGSIL+AAAHFGAMTMGADIDIRVVRDGRGPDCNVW+NFKQYGLPMPISLLRADNNLPPWRPGL EVFD IICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPD+KR +HIPST  YSL ECVHDLLDLAA+MLVM GRLVYFYPV+R++ +   SFPEHPC K++ASCEQILSFRYSRVLLTMVKI PYTDDIAE+AR+KH++F+ENHLKWLE+GNLHSAVFSP D   ++       KE KPKYRGKYV
Sbjct:    1 MWYLCVFYHRLLDYRRPEVESLADLFGAFDKETDPQSKSLEWRLPEDHHPDSPFHFVNLPSEQIACNIANRSILVKGIYELWGEGSSFEELEEAIKSCPDEQKLPYLTSGSTFKITVDSFGKVVSFQEQNDRIQQLSYIPFKGQVNLSHPDHKFWLMETDNYGSNNGLPPIVCRRIFFGREIGAADRKLLPTYQLKSRTYLGPTAMDAEMAFLMANQAQAKTGKLVYDPFVGTGSILIAAAHFGAMTMGADIDIRVVRDGRGPDCNVWTNFKQYGLPMPISLLRADNNLPPWRPGLKEVFDCIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDDKRNDHIPSTAPYSLVECVHDLLDLAARMLVMGGRLVYFYPVLREEDTIDTSFPEHPCLKMVASCEQILSFRYSRVLLTMVKIAPYTDDIAEAARIKHLEFRENHLKWLEDGNLHSAVFSPLDMQLNAAGGTKFSKESKPKYRGKYV 482
[Close]
BLAST of XM_017399031.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HH55 (UPF0020 domain-containing protein {ECO:0000259|Pfam:PF01170})

HSP 1 Score: 824.698 bits (2129), Expect = 0.000e+0
Identity = 384/496 (77.42%), Postives = 440/496 (88.71%), Query Frame = 0
 
Query:    1 MWYLCVFYHRLLDYRKPEVESLAELFGAF--------------DDDPHGQQHSLEWKLPEHHHPDSPFHFVNLPSEDIARSVANRSMLVKGLFELWGEGNSYEELEESIKGYPEERKLPYLNSDSTFRISIDTFGKVMSFTEHNERIRGLSYIPFKGRVNLKNPEHNFWIMETDDYGSHNGLPPVVQKRIFFGREVGAADRKLLPTYELKSRNYLGPTAMDAEVAFLMANQAKATHGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLSEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDEKRTNHIPSTGAYSLAECVHDLLDLAAKMLVMDGRLVYFYPVVRDDGSSSPSFPEHPCFKLIASCEQILSFRYSRVLLTMVKIKPYTDDIAESARLKHMDFKENHLKWLEEGNLHSAVFSPADHNSSSGDDGNCGKEVKPKYRGKYV 482
            MWYLCVFYHRLLDYRKPEVESLAELFGAF              +++ + + +SL+W+LP+HHHPDSPFHFVNLPS+DIAR +ANRS+LVKG++ELWGEG++Y+ELEE+IK YP+ERKLPYL S+STF+I++D+FGKV+SF E N+RIRG SYIPFKGRVNL+NP+H FW+METDDYG +NGLPPVVQ+R+FFGREVG ADRKLLPTY+LKSR YLGPTAMDAE+AFLMANQA    GKLVYDPFVGTGSIL+ AAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMP+ LLRADNNLPPWRPGL EVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPD+KRT+HIPST  YSL ECVHDLLD+AAKMLVM GRLV+FYP++R+D +   ++PEHPCFKL+ASCEQILSFRYSRVLLTMVKI PYT+++AE+AR+KH++FKENHLKWLEEGNL SAVFSP D +     D    K+ KPKYRGKYV
Sbjct:    1 MWYLCVFYHRLLDYRKPEVESLAELFGAFNLSDSDSDSDNRHVENNGNPENNSLQWRLPQHHHPDSPFHFVNLPSDDIARKIANRSILVKGVYELWGEGSTYKELEEAIKAYPDERKLPYLTSESTFKITVDSFGKVISFEEQNDRIRGFSYIPFKGRVNLRNPDHKFWLMETDDYGVNNGLPPVVQRRMFFGREVGTADRKLLPTYQLKSRTYLGPTAMDAEMAFLMANQALVAPGKLVYDPFVGTGSILIGAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPLGLLRADNNLPPWRPGLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDDKRTDHIPSTAPYSLVECVHDLLDVAAKMLVMGGRLVFFYPILREDDTIDTNYPEHPCFKLVASCEQILSFRYSRVLLTMVKIGPYTEEVAETARIKHLEFKENHLKWLEEGNLRSAVFSPLDTHLGGAGDAKPSKDSKPKYRGKYV 496
[Close]
BLAST of XM_017399031.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q6E3 ((tRNA (Guanine(10)-N2)-methyltransferase {ECO:0000313|EMBL:PSS02835.1}))

HSP 1 Score: 824.698 bits (2129), Expect = 0.000e+0
Identity = 390/496 (78.63%), Postives = 441/496 (88.91%), Query Frame = 0
 
Query:    1 MWYLCVFYHRLLDYRKPEVESLAELFGAF-------DDDPHGQQH-------SLEWKLPEHHHPDSPFHFVNLPSEDIARSVANRSMLVKGLFELWGEGNSYEELEESIKGYPEERKLPYLNSDSTFRISIDTFGKVMSFTEHNERIRGLSYIPFKGRVNLKNPEHNFWIMETDDYGSHNGLPPVVQKRIFFGREVGAADRKLLPTYELKSRNYLGPTAMDAEVAFLMANQAKATHGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMPISLLRADNNLPPWRPGLSEVFDAIICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDEKRTNHIPSTGAYSLAECVHDLLDLAAKMLVMDGRLVYFYPVVRDDGSSSPSFPEHPCFKLIASCEQILSFRYSRVLLTMVKIKPYTDDIAESARLKHMDFKENHLKWLEEGNLHSAVFSPADHNSSSGDDGNCGKEVKPKYRGKYV 482
            MWYLCVFYHRLLDYRKPEVESLA LFGAF       D D   +++       SL+W+LPE+HHPDSPFHFV LPSED+AR +ANRS+LVKG++ELWGEGN++EELEE+IK YP++RKLPYL S+STF+I++D+FGKV+SF E N+RIR LSYIPFKGRVNL+ P+H FW+METDDYGS+NGLPPVVQKRIFFGREVG+ADRKLLPTY+LKSR YLGPTAMDAE+AFLMANQA A  GKLVYDPFVGTGSIL+AAAHFGAMTMGADIDIRVVRDGRGP+CNVWSNFKQYGLPMP++LLRADNNLPPWRPGL EVFDA+ICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPD+KRT+HIPST AYSL ECVHDLLDLAA+MLVM GRLV+FYPV+R+D +    FPEHPCF+LIASCEQILS RYSRVLLTMVKI PYT++IAESAR+KH++FKENHLKWLE+GNL +AVFSPAD       D   GK+ KPKYRGKYV
Sbjct:    1 MWYLCVFYHRLLDYRKPEVESLANLFGAFNGGDWDSDGDSSNRENNGNIETMSLQWRLPENHHPDSPFHFVYLPSEDMARKIANRSILVKGVYELWGEGNTHEELEEAIKLYPDDRKLPYLTSESTFKITVDSFGKVISFEEQNDRIRSLSYIPFKGRVNLRTPDHKFWLMETDDYGSNNGLPPVVQKRIFFGREVGSADRKLLPTYQLKSRTYLGPTAMDAEMAFLMANQALAAPGKLVYDPFVGTGSILIAAAHFGAMTMGADIDIRVVRDGRGPNCNVWSNFKQYGLPMPLALLRADNNLPPWRPGLKEVFDAVICDPPYGVRAGGRKSGGRKLLKGVVGPYTVPDDKRTDHIPSTAAYSLVECVHDLLDLAARMLVMGGRLVFFYPVLREDDTIDTHFPEHPCFELIASCEQILSLRYSRVLLTMVKIGPYTEEIAESARIKHLEFKENHLKWLEDGNLRTAVFSPADPQLGGAADAKLGKDSKPKYRGKYV 496
Match NameStatsDescription
A0A5J5BQX5E-Value: 0.000e+0, PID: 82.58UPF0020 domain-containing protein {ECO:0000259|Pfa... [more]
A0A5B7BJI0E-Value: 0.000e+0, PID: 80.90UPF0020 domain-containing protein {ECO:0000259|Pfa... [more]
A0A1U7Z0G2E-Value: 0.000e+0, PID: 80.08(tRNA (Guanine(10)-N2)-methyltransferase homolog {... [more]
A0A835DLH4E-Value: 0.000e+0, PID: 78.56(Uncharacterized protein {ECO:0000313|EMBL:KAF8404... [more]
A0A2P5C659E-Value: 0.000e+0, PID: 79.88(tRNA guanosine-2'-O-methyltransferase, TRM {ECO:0... [more]
A0A4S4EWE0E-Value: 0.000e+0, PID: 78.14UPF0020 domain-containing protein {ECO:0000259|Pfa... [more]
A5AKU7E-Value: 0.000e+0, PID: 81.95UPF0020 domain-containing protein {ECO:0000259|Pfa... [more]
A0A6P6WB94E-Value: 0.000e+0, PID: 79.46(tRNA (Guanine(10)-N2)-methyltransferase homolog {... [more]
A0A7J7HH55E-Value: 0.000e+0, PID: 77.42UPF0020 domain-containing protein {ECO:0000259|Pfa... [more]
A0A2R6Q6E3E-Value: 0.000e+0, PID: 78.63(tRNA (Guanine(10)-N2)-methyltransferase {ECO:0000... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.