XM_017403256.1

Resource Type: 
Polypeptide
Name: 
XM_017403256.1
Identifier: 
XM_017403256.1-protein
Sequence: 
MFALRNLHKNSIKTLTSFILHSPSKNVIIHNDLSPKTILNNAIGTDVSVS
SHYLLNCFDGCRAMATSRGKSMRSKVETRMRKESGKTLREIRRSKKLRKK
MMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQ
AYRKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI
KEMATMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPINTLTKRKAL
FKARFEQALDSQKLNMKKLEQQLRRMGVNPDDPVAMASIQRVASTFFNAI
DKKEGSPYVFRGDKLRAAETTSKIKQAEPEDDSDQEELDKFIAEIEDAAD
REWEAEEAAEQEEASKLRYWNKGDLDGRSYRSELVKGGYDDDESKHGARS
WKDKNTNRQRINHSEDDEDDDSDDGDDEEWNASYARAINKRESDADDNHK
FREKFTSPKVDSWKAAKSGKHNNVDGFKMEVEDKFRGKLAENVSESDEML
TDLDDAMWESDDNRETVESAKSRTASYKDMSSSEEENSGYTNDAKNKVNG
MKNQQNVHGQKRSEDLISDSEILMWESDNEEEPGCTMPGKLTHGDRNKNS
GAGSKMKTPKEADETWDSD
Sequence Length: 
619
Sequence Checksum: 
0804d94861d8873e956901fa1f5d6f50
View location in JBrowse: 
DCARv2_Chr6:20310593..20315499-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017403256.1, derives from mRNA, XM_017403256.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017403256.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017403256.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AK79 (CRM domain-containing protein {ECO:0000259|PROSITE:PS51295})

HSP 1 Score: 687.567 bits (1773), Expect = 0.000e+0
Identity = 419/678 (61.80%), Postives = 486/678 (71.68%), Query Frame = 0
 
Query:    1 MFALRNLHKNSIKTLTSFILHSPSKNVIIHNDLSPKTILNNAIGT-----DVSVSSHYLLNCFDGCRAMATSRGKSMRSKVETRMRKESGKTLREIRRSKKLRKKMMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYRKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLNMKKLEQQLRRMGVNPDDPVAMASIQRVASTFFNAIDKKEGSPYVFRGDKLRAAETTSKIKQAEPEDDSDQEELDKFIAEIEDAADREWEAEEAAEQEEASKLRYWNKGDLDGRSYRSELVKGGYDDDESKHGARSWKDKNTNRQRINHSEDDEDDDSDDGDDEEWNASYARAINKRESDADDNHKFREKFTSPKVDSWKAAKSGKHNNVDGFKMEVEDKFRGKLAENVSESDEMLTDLDDAMWESDDNRETVESAKSRTASYKDMSSSEEENSGY-----------------------TNDAKNKVNGMKNQQNV-----------HGQKR-------SEDLISDSEILMWESDNEEEPGCTMP------------GKLTHGDRNKNSGAG-SKMKTPKEADETWDSD 619
            MFA RNL K+  +TL+S IL++PSK+ ++  D S +   +  I       DVS SS   LNCFDG RAM+TS+G+SMRSKVE RM+KESGKTLREIRR+KKLRKK+MTDEERLIYNLRRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAY+KIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVIN+HNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLN+KK+EQQLRRMGVNPDDPVAMASIQRVASTFFNAIDKKEGSPYVF+GDK+  AE T  ++Q EP +DSDQEELDKFIAEIEDAAD+EW AEEAAE+EE SK+RY N+ D  GR  RSE+V+    DD+ + G RSWKD    RQRIN+  DD  DD   GDD+ W++     +   ESDA+ +++   K   PKV+  K  + G+ N  +  K   + +FRGK+A   S S++ L+DL+DA+WESDD  E  +S  SRTAS K  ++S+EE   Y                        ND K    G   Q+ +           H + +       SED +SDSEI MWESD EEE G                G+  H   N+ +G    KMKTPK+ DETWDSD
Sbjct:    1 MFAARNLQKHCFRTLSSLILYNPSKDHMLLRDGSSRFTSSRVIQASLAIKDVSFSSIKFLNCFDGSRAMSTSKGRSMRSKVERRMQKESGKTLREIRRAKKLRKKLMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLNIKKIEQQLRRMGVNPDDPVAMASIQRVASTFFNAIDKKEGSPYVFQGDKMTMAEPTRNLEQLEPAEDSDQEELDKFIAEIEDAADKEWAAEEAAEKEEISKIRYLNREDSGGRFGRSEMVEDS--DDDIRGGTRSWKD-TRGRQRINY--DDNKDDIISGDDDGWDSDDVEDVFNHESDANPSNETHSKINVPKVERRKRDEIGRANANEDSKRSPKAQFRGKMAHEDSISEDTLSDLEDAVWESDDEEEH-DSRGSRTASSKYRNNSDEEEEFYHMKRDERNEVKDLESDADNSDEACNDFKTFSVGRGKQEKISRGNYNEGIERHAEAKMTAENYESEDSLSDSEIPMWESDAEEELGLRTSRTAAYDDGSNDKGEDFHMKGNEKNGVNDGKMKTPKQVDETWDSD 672
[Close]
BLAST of XM_017403256.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DAK2 (CRM domain-containing protein {ECO:0000259|PROSITE:PS51295})

HSP 1 Score: 668.692 bits (1724), Expect = 0.000e+0
Identity = 399/699 (57.08%), Postives = 473/699 (67.67%), Query Frame = 0
 
Query:    1 MFALRNLHKNSIKTLTSFILHSPSKNVIIHNDLSPKTILNNAIGT--------------------DVSVSSHYLLNCFDGCRAMATSRGKSMRSKVETRMRKESGKTLREIRRSKKLRKKMMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYRKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLNMKKLEQQLRRMGVNPDDPVAMASIQRVASTFFNAIDKKEGSPYVFRGDKLRAAETTSKIKQAEPEDDSDQEELDKFIAEIEDAADREWEAEEAAEQEEASKLRYWNKGDLDGRSYRSELVKGGYDDDESKHGARSWKDKNTNRQRINHSEDDEDDDSDDGDDEEWNASYARAINKRESDADDNHKFREKFTSPKVDSWKAAKSGKHNNVDGFKMEVEDKFRGKLAENVSESDEMLTDLDDAMWESD-DNRETVESAKSRTASYKDMSSSEEENSGYTNDAKNKVN------------------------GMKNQQNVH----------------GQK------RSEDLISDSEILMWESDNEEEPGCTMPGKLTHGDRN---------KNSGAGS----KMKTPKEADETWDSD 619
            MFA RNL K+  KTL+S IL++P KN ++ +D+  K + +NAI T                    DVS+ S  + NCF+G RAM+T +G+SMRSKVE+RMRKESGKTLREIRR+KKLRKK+MTDEERL+YNLRRAKKKVALLLQKLKKYELPELP PRHDPELLTPEQLQA +KIGF+NKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIP+NTLTKRKALFKARFEQAL+SQKLN+KKLEQQLRRMGVNPDDPVAMASI+RVASTFFNAIDKK+GSPYVFR DK    E +  ++  EP +DSDQEELD+FIAEIEDAAD+EW  EEAAE+EE  K+RYW++ DL GR  RSEL++     D ++ G RSWKD  + R+R           SDD  DEEW+++     +  ESD  D+ + R KF +P+V+  K    G+ N   GFK  VE KF   L ++ S SD ML+D++DAMW+SD + ++ +  +++    Y+  S  EE+      D KN V                           +    +H                G K       SEDL  DS+I MWESD EE+         T+  RN         K  G G     K KTPK+ADETWDSD
Sbjct:    1 MFASRNLQKHCFKTLSSLILNNPFKNALLPSDVPLKLMSSNAIQTSFPNSTANLLIFHSFPPGFKDVSLCSTKIFNCFEGSRAMSTGKGRSMRSKVESRMRKESGKTLREIRRAKKLRKKLMTDEERLVYNLRRAKKKVALLLQKLKKYELPELPLPRHDPELLTPEQLQAIKKIGFKNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKLEQQLRRMGVNPDDPVAMASIRRVASTFFNAIDKKDGSPYVFREDKQSEVEPSRNLRWLEPGEDSDQEELDRFIAEIEDAADKEWAEEEAAEKEELGKIRYWSRDDLGGRFRRSELLRSEDSVDATRGGGRSWKDAESGRRR-----------SDDEGDEEWDSNGVGDASDYESDTADHDQARYKFKAPRVERGKQNGVGRANGNKGFKRNVEAKFSENLPKDDSGSDNMLSDVEDAMWQSDSEGKQDLGKSEATRNDYRSSSDEEEDFLQMKRDEKNGVAVVNHFESDSEDFDESLDKMNLSRVATEKHSKIHIANNNKAFDRNAGANFGGKIAKEKYESEDLSGDSDIAMWESDAEEDVDSETLRSETYDHRNNSEDDDYVLKKDGKGGVNDKKKKTPKQADETWDSD 688
[Close]
BLAST of XM_017403256.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I9F4 (CRM domain-containing protein {ECO:0000259|PROSITE:PS51295})

HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 377/634 (59.46%), Postives = 451/634 (71.14%), Query Frame = 0
 
Query:    1 MFALRNLHKNSIKTLTSFILHSPSKNVIIHNDLSPKTILNNAIGT-----DVSVSSHYLLNCFDGCRAMATSRGKSMRSKVETRMRKESGKTLREIRRSKKLRKKMMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYRKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLNMKKLEQQLRRMGVNPDDPVAMASIQRVASTFFNAIDKKEGSPYVFRGDKLRAAETTSKIKQAEPEDDSDQEELDKFIAEIEDAADREWEAEEAAEQEEASKLRYWNKGDLDGRSYRSELVKGGYDDDESKHGARSWKDKNTNRQRINHSEDDEDDDSDDGDDEEWNASYARAINKRESDADDNHKFREKFTSPKVDSWKAAKSGKHNNVDGFKMEVEDKFRGKLAENVSESDEMLTDLDDAMWESD-DNRETVESAKSRTASYKDMSSSEEENSGYTNDAKNKVN------------------------GMKNQQNVH----------------GQK------RSEDLISDSEILMWESDNEEE 582
            MFA RNL K+  KTL+S IL++P KN ++ +D+  K + +NAI T     DVS+ S  + NCF+G RAM+T +G+SMRSKVE+RMRKESGKTLREIRR+KKLRKK+MTDEERL+YNLRRAKKKVALLLQKLKKYELPELP PRHDPELLTPEQLQA +KIGF+NKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVIN+HNVKTIIMFRGRNYRQPKNLIP+NTLTKRKALFKARFEQAL+SQKLN+KKLEQQLRRMGVNPDDPVAMASI+RVASTFFNAIDKK+GSPY+FR DK    E +  +++ EP +DSDQEELD+FIAEIEDAAD+EW  EEAAE+EE  K+RYW++ DL GR  RSEL++     D ++ G RSWKD  + R+R           SDD  DEEW+++     +  ESD   + + R KF +P+V+  K    G+ N   GFK  VE KF   L ++ S SD ML+D++DAMW+SD + ++    +++    Y+  S  EE+      D KN V                           +    +H                G K       SEDL  DS+I MWESD EE+
Sbjct:   31 MFASRNLQKHCFKTLSSLILNNPFKNALLPSDVPLKLMSSNAIQTSFPTKDVSLCSTKIFNCFEGSRAMSTGKGRSMRSKVESRMRKESGKTLREIRRAKKLRKKLMTDEERLVYNLRRAKKKVALLLQKLKKYELPELPLPRHDPELLTPEQLQAIKKIGFKNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINLHNVKTIIMFRGRNYRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKLEQQLRRMGVNPDDPVAMASIRRVASTFFNAIDKKDGSPYIFREDKQSEVEPSRNLRRLEPGEDSDQEELDRFIAEIEDAADKEWAEEEAAEKEELGKIRYWSRDDLGGRFRRSELLRSEDSVDATRGGGRSWKDAESGRRR-----------SDDEGDEEWDSNGVGDASDYESDTAHHDQARYKFKAPRVERGKQNGVGRANGNKGFKRNVEAKFSENLPKDDSGSDNMLSDVEDAMWQSDSEGKQDFGKSEATRNDYRSSSDEEEDFLQMKRDEKNGVAVVNHFESDSEDFDESLDKMNLSRVATEKHSKIHIANNNEAFDRNAGANFGGKIAKEKYESEDLSGDSDIAMWESDAEED 653

HSP 2 Score: 45.8246 bits (107), Expect = 2.188e-2
Identity = 42/144 (29.17%), Postives = 69/144 (47.92%), Query Frame = 0
 
Query:  401 WKDKNTNRQRINHSEDDEDDDSDDGDDEEWNASYAR-------AINKRESDADDNHKFREKFTSPKVDSWKAAKSGKHNNVDGFKMEVEDKFRGKLAENVSESDEMLTDLDDAMWESDDNRETVESAKSRTASYKDMSSSEEEN 537
            W+  +  +Q    SE   +D     D+EE      R        +N  ESD++D  +  +K    +V + K +K    NN + F       F GK+A+   ES+++  D D AMWES D  E V+S   R+ +Y   ++SE+++
Sbjct:  532 WQSDSEGKQDFGKSEATRNDYRSSSDEEEDFLQMKRDEKNGVAVVNHFESDSEDFDESLDKMNLSRVATEKHSKIHIANNNEAFDRNAGANFGGKIAKEKYESEDLSGDSDIAMWES-DAEEDVDSETLRSETYDHRNNSEDDD 674
[Close]
BLAST of XM_017403256.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2KZU9 (CRM domain-containing protein {ECO:0000259|PROSITE:PS51295})

HSP 1 Score: 635.18 bits (1637), Expect = 0.000e+0
Identity = 386/684 (56.43%), Postives = 463/684 (67.69%), Query Frame = 0
 
Query:    1 MFALRNLHKNSIKTLTSFILHSPSKNVIIHNDLSPKTILNNAIGTDVS------VSSHYLLNCFDG-CRAMATSRGKSMRSKVETRMRKESGKTLREIRRSKKLRKKMMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYRKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLNMKKLEQQLRRMGVNPDDPVAMASIQRVASTFFNAIDKKEGSPYVFRGDKLRAAETTSKIKQAEPEDDSDQEELDKFIAEIEDAADREWEAEEAAEQEEASKLRYWNKGDLDGRSYRSELV--KGGYDDDESKHGARSWKDKNTNRQRINHSEDDEDDDSDDGDDEEWNASYARAINKRESDADDNHKFREKFTSPKVDSWKAAKSGKHNNVDGFKMEVEDKFRGKLAENVSESDEMLTDLDDAMWESDDNRETVESAKSRTASYKDMSSSEEENSGY--TNDAKNKVN-----------------GMKNQQNVHGQ--------------------------KRSEDLISDSEILMWESDNEEEPGCTMPGKLTH---GD-------RNKNSGA-GSKMKTPKEADETWDSD 619
            MFA RNL ++S KTL S +  +PSKN++   D+ P TI +N     +        SSH  L+ F G  R+M+TS+G+SMRSKVE RM++ESGKTLRE RR++KL+KK+MT+EERL+YNL+RAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQA++KIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATM+ARLSGGIV+N+HNVKTIIMFRGRNYRQPK LIPINTLTKRKALFKARFEQAL+SQKLN+KKLEQQLRRMGVNP+DPVAMASIQRVASTFFNAID++EGSPYVFR DK +  E     +++EP DDSDQEELD+FIAEIEDAAD EW AEE AE+EE SK+RYWN+ D +GR   SE    +  YDDD     AR W+D   ++QR N   D ED+D   GDD EW+++  R  +  ESDADD+ +  +KF   + + WK  K  +  N D  K      FR +  E  S+S    +D ++AMW+SD   E   S  SR A+Y   SSS+EE++ Y    D KN VN                 G +  Q  H +                            SE++ SD E  MWESD E     +  G+  +   GD       + K+ G    K +T KE DE WDSD
Sbjct:    1 MFAARNLQRHSFKTLFSLLQSNPSKNLVFLRDVLPHTISSNVTQPSIPSEDSLLFSSHASLDPFKGWFRSMSTSKGRSMRSKVEKRMQRESGKTLREKRRAQKLKKKLMTEEERLVYNLKRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAFKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVVNIHNVKTIIMFRGRNYRQPKILIPINTLTKRKALFKARFEQALESQKLNIKKLEQQLRRMGVNPEDPVAMASIQRVASTFFNAIDRQEGSPYVFREDKQQVMEPIKNFEESEPPDDSDQEELDRFIAEIEDAADEEWVAEEEAEKEELSKIRYWNRADFEGRFRGSETRRDRNSYDDDYEVKQARGWRDAR-DKQRTN-DRDGEDNDISGGDD-EWDSNDVRTASDLESDADDSDEVHKKFKPSRANRWKEDKILRAKNNDNSKRNPIANFRRQATEEDSDSVNTSSDTENAMWQSDAEEEP-NSEASRAATYNYRSSSDEEDNLYHVKGDEKNGVNQQESDADDSDETHVRFKGSRVAQRKHNRIGRSNNDSYFETKAEVKFSGNMAEEDSGSEEMFSDLENAMWESDAEGNSSASTAGRHDYRSSGDEEDHHPMKAKDYGVDNKKSRTQKELDEAWDSD 680
[Close]
BLAST of XM_017403256.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P9ET39 ((CRM-domain containing factor CFM9, mitochondrial {ECO:0000313|RefSeq:XP_035550799.1}))

HSP 1 Score: 631.328 bits (1627), Expect = 0.000e+0
Identity = 383/681 (56.24%), Postives = 467/681 (68.58%), Query Frame = 0
 
Query:    1 MFALRNLHKNSIKTLTSFILHSPSKNVIIHNDLSPKTILNNAIGT----DVSVSSHYLLNCFD--GCRAMATSRGKSMRSKVETRMRKESGKTLREIRRSKKLRKKMMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYRKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLNMKKLEQQLRRMGVNPDDPVAMASIQRVASTFFNAIDKKEGSPYVFRGDKLRAAETTSKIKQAEPEDDSDQEELDKFIAEIEDAADREWEAEEAAEQEEASKLRYWNKGDLDGRSYRSELVKG-GYDDDESKH---GARSWKDKNTNRQRINHSEDDEDDDSDDGDDEEWNASYARAINKRESDADDNHKFREKFTSPKVDSWKAAKSGKHNNVDGFKMEVEDKFRGKLAENVSESDEMLTDLDDAMWESDDNRETVESAKSRTASYKDMSSSEEENSGY----------------------------TNDAKNKVNGMKNQQNVHGQKR----------------SEDLISDSEILMWESDNEEEPGCTMPGKLTHGD-------RNKNSGAGSKMK-TPKEADETWDSD 619
            MFA R L ++ +KTL+S +  +PSKN+I   D+SP  I +N        ++  SSH  LN F    C +M+TS+G+SMRSKVE RM++ESGKTLRE RR++KL+KK+MT+EERLIYNL+RAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQA++K+GFRN+NYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGG+VIN+HN KTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQAL+SQKLN+KK+EQQLRRMGVNP+DPVAMASI++VASTFFNAID+KEGSPYVFR +K +  ET    +++EP  DSDQEELD+FIAEIEDAAD+EW AEEAAE+EE SK+RYWN+ +  GR  RSE ++   YDDD+      G R WK+    + R N + DDED D  DG+D EW+++  R     ESD+DD+H    K    + + WK  K     N    K   E  FR +  E  S+S+ ML+DL++ MW+SD  +E  +S  SR AS    SSS+EE   Y                            +  A+ K N      N    +R                SED++SD E  MWESD E++P  +   + + GD        ++  GA +K K T K ADE WDSD
Sbjct:    1 MFAARTLRRHCLKTLSSLLHSNPSKNLIFLRDVSPNPIWSNVTSIPCKDNLLFSSHAPLNPFMVWSC-SMSTSKGRSMRSKVERRMQRESGKTLREKRRAQKLKKKLMTEEERLIYNLKRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAFKKVGFRNRNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGVVINIHNTKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKMEQQLRRMGVNPEDPVAMASIRKVASTFFNAIDRKEGSPYVFREEKQQVTETPENWEESEPPVDSDQEELDRFIAEIEDAADKEWVAEEAAEKEELSKIRYWNREEFGGRLRRSETLRAKPYDDDDDDDEVKGTRGWKE-TRGKPRTNDT-DDEDIDISDGED-EWDSNDVRDAVDVESDSDDSHHVHGKVRVSRTNRWKEDKIHGAKNNGSSKRNPEANFRRERTEEESDSENMLSDLENVMWQSDAEKEH-DSEASRAASNNYRSSSDEEEDLYHIKGNEKKGDKDESGADESYETRGRYTVSRVAQKKHNRTGEANNYECFQRKDAADFRGKMTEKESGSEDMLSDLENAMWESDVEDDPRASTAERYSPGDEENRHQMEDEKYGADNKKKRTRKAADEAWDSD 676
[Close]
BLAST of XM_017403256.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0H7V6 ((RNA-binding CRS1 / YhbY (CRM) domain protein {ECO:0000313|EMBL:GFZ19051.1}))

HSP 1 Score: 622.083 bits (1603), Expect = 0.000e+0
Identity = 380/680 (55.88%), Postives = 452/680 (66.47%), Query Frame = 0
 
Query:    1 MFALRNLHKNSIKTLTSFILHSPSKNVIIHNDLSPKTILNNAIGTDVSVSSHYLLNCFDGCRAMATSRGKSMRSKVETRMRKESGKTLREIRRSKKLRKKMMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYRKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLNMKKLEQQLRRMGVNPDDPVAMASIQRVASTFFNAIDKKEGSPYVFRGDKLRAAETTSKIKQAEPEDDSDQEELDKFIAEIEDAADREWEAEEAAEQEEASKLRYWNKGDLDGRSYRSELVKGGYDDDESKHGARSWKDKNTNRQRINHSEDDEDDDSDDGDDEEWNASYARAINKRESDADDNHKFREKFTSPKVDSWKAAKSGKHNNVDGFKMEVEDKFRGKLAENVSESDEMLTDLDDAMWESDDNRET-VESAKSRTASYKDMSSSEEENSGYTNDAKNKVNGMKNQ--------------------------------------QNVHGQKR---------SEDLISDSEILMWESDNEEEPGCTMPGKLTHGDRNKNSGA-------------GSKMKTPKEADETWDSD 619
            MFA +NL     +TL+S IL +P KNV+  +D+  K   ++   +   + S   LN  DG RAM+T  G+SMRSKVE RMRKESGKTLREIRR+K LRKK+MTDEERLIYNLRRAKKKVALLLQKLKKYELPELP PRHDPELLTPEQLQAY+KIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATM+ARLSGGIVIN+HNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQAL+SQKLN+KK+EQQLRR GVNPDDPVA+ASIQRVASTFFNAIDKK GSPYVFR DK   A  ++ ++Q+EP DDSDQEELD+FIAEIEDAAD+EW AEEAAE+EE  K+RY N+ D  GR  RSE++     D + + G R  KD  + R+R          DSD+ D+    + Y       ESDAD++ +   KF  P+++  K     + +  + F+   E KF  K  +  SES++ML+ ++DAMW+SD   E  +  A + T +YK  SS EEE+  +    KN V G+ N                                       +N  G+ R         SEDL SDSE  MWESD +E+         T   R+ N                 + MK+PK+ DE WDSD
Sbjct:    1 MFAAKNLQNRCFRTLSSLILTNPFKNVLSSSDVPSKFTTSDVFQSSSQIKS---LNLLDGSRAMSTGLGRSMRSKVERRMRKESGKTLREIRRAKDLRKKLMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPTPRHDPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRKGVNPDDPVALASIQRVASTFFNAIDKKAGSPYVFREDKQFEAIPSTNLQQSEPADDSDQEELDRFIAEIEDAADKEWAAEEAAEKEEFGKIRYLNREDFGGRFRRSEMLNSEDSDTDIRGGERGLKDARSGRRRTG--------DSDNEDEVGVMSDY-------ESDADEHDQAPVKFGKPRLERGKQNGVVRAHGNEAFRRNAEAKFSAKTLKEDSESEDMLSGVEDAMWQSDSEEEQDLGQASAITNNYKS-SSGEEEDYLHAKRYKNGV-GVANHFASNANDFDEAPDQLNLSRVAREKQNKNHKANNSEAFDRNAGGKFRGESTKEKYESEDLFSDSETAMWESDVQEDLDSETSRLGTSDYRSNNEDEDYVMKKDGKDEVNDNNMKSPKQVDEAWDSD 660
[Close]
BLAST of XM_017403256.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P9B3 ((RNA-binding, CRM domain protein {ECO:0000313|EMBL:PSR87551.1}))

HSP 1 Score: 620.542 bits (1599), Expect = 0.000e+0
Identity = 383/688 (55.67%), Postives = 451/688 (65.55%), Query Frame = 0
 
Query:    1 MFALRNLHKNSIKTLTSFILHSPSKNVIIHNDLSPKTILNNAIGTDVSVSSHYLLNCFDGCRAMATSRGKSMRSKVETRMRKESGKTLREIRRSKKLRKKMMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYRKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLNMKKLEQQLRRMGVNPDDPVAMASIQRVASTFFNAIDKKEGSPYVFRGDKLRAAETTSKIKQAEPEDDSDQEELDKFIAEIEDAADREWEAEEAAEQEEASKLRYWNKGDLDGRSYRSELVKGGYDDDESKHGARSWKDKNTNRQRINHSEDDEDDDSDDGDDEEWNASYARAINKRESDADDNHKFREKFTSPKVDSWKAAKSGKHNNVDGFKMEVEDKFRGKLAENVSESDEMLTDLDDAMWESDDNRET-VESAKSRTASYKDMSSSEEENSGYTNDAKNKVNGMKNQ--------------------------------------QNVHGQKR---------SEDLISDSEILMWESD-------------------NEEEPGCTMP--GKLTHGDRNKNSGAGSKMKTPKEADETWDSD 619
            MFA RNL     +TL+S IL +P KNV+  +D+  K   ++   +   + S   LN  DG R M+T  G+SMRSKVE RMRKESGKTLREIRR+K LRKK+MTDEERLIYNLRRAKKKVALLLQKLKKYELPELP PRHDPELLTPEQLQAY+KIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATM+ARLSGGIVIN+HNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQAL+SQKLN+KK+EQQLRR GVNPDDPVA+ASIQRVASTFFNAIDKK GSPYVFR DK   A  ++ ++Q+EP DDSDQEELD+FIAEIEDAAD+EW AEEAAE+EE  K+RY N+ D  GR   SEL+     D + + G R  KD  + R+R          DSD+ D+    + Y       ESDAD++ +   KF  P+++  K     + +  + F+   E KF  K  +  SES++ML+ ++DAMW+SD   E  +  A + T +YK  SS EEE+  +    KN V G+ N                                       +N  G+ R         SEDL SDSE  MWESD                   N E+  C M   GK    D N        MK+PK+ DE W+SD
Sbjct:    1 MFAARNLQNRCFRTLSSLILTNPFKNVLSSSDVPSKFTTSDVFQSSFQIKS---LNLLDGSREMSTGLGRSMRSKVERRMRKESGKTLREIRRAKDLRKKLMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPTPRHDPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRKGVNPDDPVALASIQRVASTFFNAIDKKAGSPYVFREDKQFEAIPSTNLQQSEPADDSDQEELDRFIAEIEDAADKEWAAEEAAEKEEFGKIRYLNREDFGGRFRSSELLNSEDSDTDIRGGERGLKDARSGRRRTG--------DSDNEDEVGVMSDY-------ESDADEHDQAPVKFGKPRLERGKQNGVVRAHGNEAFRRNAEAKFSEKTLKEDSESEDMLSGVEDAMWQSDSEEEQDLGQASAITNNYKS-SSGEEEDYLHVKRYKNGV-GVANHFASNANDFDEAPDQLNLSRVAREKQNKNHKANNSDAFDRNAGGKFRGESTKEKYESEDLFSDSETAMWESDVQEDLDSETSRLGTSDYKSNSEDEDCVMKKDGKDEVNDNN--------MKSPKQVDEAWESD 660
[Close]
BLAST of XM_017403256.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9I8B0 (CRM domain-containing protein {ECO:0000259|PROSITE:PS51295})

HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0
Identity = 384/718 (53.48%), Postives = 463/718 (64.48%), Query Frame = 0
 
Query:    1 MFA-LRNLHKNSIKTLTSFILHSPSKNVIIHNDLSPKTILNNAIGTDVS------VSSHYLLNCFDG-CRAMATSRGKSMRSKVETRMRKESGKTLREIRRSKKLRKKMMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYRKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLNMKKLEQQLRRMGVNPDDPVAMASIQRVASTFFNAIDKKEGSPYVFRGDKLRAAETTSKIKQAEPEDDSDQEELDKFIAEIEDAADREWEAEEAAEQEEASKLRYWNKGDLDGRSYRSELVK--GGYDDDESKHGARSWKDKNTNRQRINHSEDDEDDDSDDGDDEEWNASYARAINK---------------------------RESDADDNHK------FREKFTSPKVDSWKAAKSGKHNNVDGFKMEVEDKFRGKLAENVSESDEMLTDLDDAMWESDDNRETVESAKSRTASYKDMSSSEEENSGY--TNDAKNKVN--------------------------------------GMKNQQNVHGQKRSED-----LISDSEILMWESDNEEEPGCTMPGKLTH---GD-------RNKNSGAGS-KMKTPKEADETWDSD 619
            MFA  R L ++S KTL+S +  +PSKN++   D  P +I +N     +        SSH  LN F G  R+M+TS+G+SMRSKVE RM++ESGKTLRE RR++KL+KK+MT+EERLIYNL+RAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQA++KIGF+NKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATM+ARLSGGIVIN+HNVKTIIMFRGRNYRQPK LIPINTLTKRKALFKARFEQAL+SQKLN+KK+EQQLRRMGVNP+DPVAMASIQRVASTFFNAID+KEGSPYVFR DK +  E     +++EP  DSDQEELD+FIAEIEDAAD+EW AEE AE+E+  K+RYWN+ + +GR   SE  +    YDDD  K GAR  KD    +QR N S DDED+D  +GDD EW+++  R  +                            R S  +D  K      FR K T    DS  A      NN D FK      FR K  E  S+S+ +L+D+++AMW+S+   E    A SR A+    SSS+EE   Y    D KN+VN                                        K++    G    ED     + SD +  +WESD  ++      G+  +   GD       +++N G  + K KT K+ DE WDSD
Sbjct:    1 MFASRRTLQRHSFKTLSSLLQSNPSKNLVFLRDGLPHSISSNVTQASIPSEDSFLFSSHAPLNPFKGWLRSMSTSKGRSMRSKVERRMQRESGKTLREKRRAQKLKKKLMTEEERLIYNLKRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKILIPINTLTKRKALFKARFEQALESQKLNIKKMEQQLRRMGVNPEDPVAMASIQRVASTFFNAIDRKEGSPYVFREDKQQVMEPIKNFEESEPTVDSDQEELDRFIAEIEDAADKEWVAEEEAEKEDLGKIRYWNRAEFEGRFRGSETRRDHNSYDDDAVK-GARGRKD-TRGKQRTNDS-DDEDNDISNGDD-EWDSNDVRNASDLESDDDSDEGQEKFKVSRANRWKEDKIRLSKNNDKFKRNPIANFRRKATEEGSDSENAMFRSSKNN-DKFKRTPIANFRRKATEEDSDSENVLSDVENAMWQSEAEEEHNPEA-SRAATNNYQSSSDEEKDLYHIKGDEKNEVNEHESDADDLDETHNRYRVSRVAQQKHNRIGRANNAAYFDRKDETKFRGNMAEEDSGSKEVFSDLKDALWESDAGDDSSALTAGRYNYRSSGDEEDHHRMKDENFGVNNKKTKTRKDMDEAWDSD 712
[Close]
BLAST of XM_017403256.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438H289 ((Putative CRM domain-containing protein, chloroplastic {ECO:0000313|EMBL:RVW78588.1}))

HSP 1 Score: 616.69 bits (1589), Expect = 0.000e+0
Identity = 395/717 (55.09%), Postives = 468/717 (65.27%), Query Frame = 0
 
Query:    1 MFALRNLHKNSIKTLTSFILHSPSKNVIIHNDLSPKTILNNAI----GTDVSVSSHYLLNCFDG-CRAMATSRGKSMRSKVETRMRKESGKTLREIRRSKKLRKKMMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYRKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPINTLTKRK------------------------------ALFKARFEQALDSQKLNMKKLEQQLRRMGVNPDDPVAMASIQRVASTFFNAIDKKEGSPYVFRGDKLRAAETTSKIKQA-EPEDDSDQEELDKFIAEIEDAADREWEAEEAAEQEEASKLRYWNKGDLDGRSYRSELVKGGYDDDESKHGARSWKDKNTNRQRINHSEDDEDDDSDDGDDEEWNASYARAINKRESDADDNHKFREKFTSPKVDSWKA-AKSGKHNNVDGFKMEVEDKFRGKLAENVSESDEMLTDLDDAMWESDDNRETVESAKSRTAS--YKDMSSSEEENSGYTNDAKNKVNGMKNQQN----------------------VHGQ--------------------------KRSEDLISDSEILMWESDNEEEPGCT--MPGKLTHGDR------NKNSGAGSK---MKTPKEADETWDSD 619
            M  +RNL + S+KTL+S +   P KNV+    +  K + +N I    G++   SS    N F G  RAM+T+ G+SMRSKVE RMRKESGKTLRE+RR++KLRKK+MTDEERLIYNLRRAKKKVALLLQKLKKYELPELP PRHDPELLT EQLQAY+KIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVH+VKTIIMFRGRNYRQPKNLIPINTLTKRK                              ALFKARFEQALDSQKLN+KK+EQQLRRMGVNP+DPVAMASIQRVASTFFNAIDK+EGSPYVF+GDKL  A  T  +K + EP  DSDQEELD+FIAEIEDAAD+EW  EEAAE+EE SK+RYWN+ +  GR  R +  K   D D    GAR W +    RQR   + DDE +D  +G DEEW+++  R +   ESD DD+ +   +FT+P++ S K      K+NN   FK   E+ FR K+ E  S S++ML +L++AMWESD   E  +S  SR AS  Y+  S  +E       D+KN  N + + +N                       HGQ                            SE+++SDS++ MWESD+E     +  +      GD        KN  +  K   MKTPK+ DETWDSD
Sbjct:    1 MSIVRNLQRQSLKTLSSLLQSHPYKNVVSRRYVPLKCLSSNPIQSSAGSEDCSSSISPWNGFSGWSRAMSTAGGRSMRSKVERRMRKESGKTLREVRRAQKLRKKLMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPAPRHDPELLTAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVKTIIMFRGRNYRQPKNLIPINTLTKRKAMLSSTGQWYIFIVAATKKAKEAVQPGHEHALFKARFEQALDSQKLNIKKIEQQLRRMGVNPEDPVAMASIQRVASTFFNAIDKQEGSPYVFQGDKLFGAAPTEDLKLSEEPPVDSDQEELDQFIAEIEDAADKEWAVEEAAEKEELSKMRYWNREEFAGRFRRFDNPKNE-DFDSDVRGARGW-NHTRGRQRTTDT-DDEGNDVSEG-DEEWDSNDVRDLRTPESDGDDSDEVHNEFTAPRMQSGKLDFGRAKNNNSKDFKRNAEE-FRRKVDEEDSGSEDMLDNLENAMWESDAEEEH-DSRTSRMASNDYRSSSDDDEHLHHIKRDSKNARNLVNDHENDADYSESDEGQDEFRESRIAKQKHGQISRVNNDQGFMRNAEANFSRNMIEEDSESENMLSDSKVGMWESDDEGYSNVSKAISNDYQSGDEEEDYHITKNETSKEKDKRMKTPKQVDETWDSD 711
[Close]
BLAST of XM_017403256.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438D1S7 ((Putative CRM domain-containing protein, chloroplastic {ECO:0000313|EMBL:RVW29395.1}))

HSP 1 Score: 611.683 bits (1576), Expect = 0.000e+0
Identity = 396/720 (55.00%), Postives = 468/720 (65.00%), Query Frame = 0
 
Query:    1 MFALRNLHKNSIKTLTSFILHSPSKNVIIHNDLSPKTILNNAI----GTDVSVSSHYLLNCFDG-CRAMATSRGKSMRSKVETRMRKESGKTLREIRRSKKLRKKMMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYRKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHNVKTIIMFRGRNYRQPKNLIPINTLTKRK------------------------------ALFKARFEQALDSQKLNMKKLEQQLRRMGVNPDDPVAMASIQRVASTFFNAIDKKEGSPYVFRGDKLRAAETTSKIKQA-EPEDDSDQEELDKFIAEIEDAADREWEAEEAAEQEEASKLRYWNKGDLDGRSYRSELVKGGYDDDESKHGARSWKDKNTNRQRINHSEDDEDDDSDDGDDEEWNASYARAINKRESDADDNHKFREKFTSPKVDSWKA-AKSGKHNNVDGFKMEVEDKFRGKLAENVSESDEMLTDLDDAMWESDDNRETVESAKSRTAS--YKDMSSSEEENSGYTNDAKNKVNGMKNQQN----------------------VHGQ--------------------------KRSEDLISDSEILMWESDNEEEPGCTMPGKLT-------------HGDRNKNSGAGSK-MKTPKEADETWDSD 619
            M  +RNL + S+KTL+S +   P KNV+    +  K + +N I    G++   SS    N F G  RAM+T+ G+SMRSKVE RMRKESGKTLRE+RR++KLRKK+MTDEERLIYNLRRAKKKVALLLQKLKKYELPELP PRHDPELLT EQLQAY+KIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVH+VKTIIMFRGRNYRQPKNLIPINTLTKRK                              ALFKARFEQALDSQKLN+KK+EQQLRRMGVNP+DPVAMASIQRVASTFFNAIDK+EGSPYVF+ DKL  A  T  +K + EP  DSDQEELD+FIAEIEDAAD+EW  EEAAE+EE SK+RYWN+ +  GR  R +  K   D D    GAR W +    RQR   + DDE +D  +G DEEW+++  R +   ESD DD+ +   +FT+P++ S K      K+NN   FK   E+ FR K+ E  S S++ML DL++AMWESD   E  +S  SR AS  Y+  S  +E       D+KN  N + + +N                       HGQ                            SE+++SDS++ MWESD+E   G +   K               H  +N+ S    K MKTPK+ DETWDSD
Sbjct:  454 MSIVRNLQRRSLKTLSSLLQSHPYKNVVSRRYVPLKCLSSNPIQSSAGSEDCSSSISPWNGFSGWSRAMSTAGGRSMRSKVERRMRKESGKTLREVRRAQKLRKKLMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPAPRHDPELLTAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVKTIIMFRGRNYRQPKNLIPINTLTKRKAMLSSTGQWYIFIVAATKKAKEAVQPGHEHALFKARFEQALDSQKLNIKKIEQQLRRMGVNPEDPVAMASIQRVASTFFNAIDKQEGSPYVFQEDKLFGAAPTEDLKLSEEPPVDSDQEELDQFIAEIEDAADKEWAVEEAAEKEELSKMRYWNREEFAGRFRRFDNPK-NEDFDSDVRGARGW-NHTRGRQRTTDT-DDEGNDVSEG-DEEWDSNDVRDLRTPESDGDDSDEVHNEFTAPRMQSGKLDFGRAKNNNSKDFKRNAEE-FRRKVDEEDSGSEDMLDDLENAMWESDAEEEH-DSRTSRMASNDYRSSSDDDEHLHRIKRDSKNARNLVNDHENDADYSESDEGQDEFRESRIAKQKHGQISRVNNDQGFMRNAEANFSRNMIEEDSESENMLSDSKVGMWESDDE---GYSKVSKAISNDYQSGDEEEDYHITKNETSKEKDKRMKTPKQVDETWDSD 1164
Match NameStatsDescription
A0A5J5AK79E-Value: 0.000e+0, PID: 61.80CRM domain-containing protein {ECO:0000259|PROSITE... [more]
A0A4S4DAK2E-Value: 0.000e+0, PID: 57.08CRM domain-containing protein {ECO:0000259|PROSITE... [more]
A0A7J7I9F4E-Value: 2.188e-2, PID: 59.46CRM domain-containing protein {ECO:0000259|PROSITE... [more]
A0A7N2KZU9E-Value: 0.000e+0, PID: 56.43CRM domain-containing protein {ECO:0000259|PROSITE... [more]
A0A6P9ET39E-Value: 0.000e+0, PID: 56.24(CRM-domain containing factor CFM9, mitochondrial ... [more]
A0A7J0H7V6E-Value: 0.000e+0, PID: 55.88(RNA-binding CRS1 / YhbY (CRM) domain protein {ECO... [more]
A0A2R6P9B3E-Value: 0.000e+0, PID: 55.67(RNA-binding, CRM domain protein {ECO:0000313|EMBL... [more]
A0A2N9I8B0E-Value: 0.000e+0, PID: 53.48CRM domain-containing protein {ECO:0000259|PROSITE... [more]
A0A438H289E-Value: 0.000e+0, PID: 55.09(Putative CRM domain-containing protein, chloropla... [more]
A0A438D1S7E-Value: 0.000e+0, PID: 55.00(Putative CRM domain-containing protein, chloropla... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.