Resource Type:
Polypeptide
Name:
XM_017400068.1
Identifier:
XM_017400068.1-protein
Sequence:
MGRHPCCVKPKLRKGLWSPEEDEKLFNHIARFGVGCWSSVPKLAGLQRCG
KSCRLRWINYLRPDLKRGMFSQEEEDLILSLHQLLGNRWAQIAAQLPGRT
DNEIKNFWNSCLKKKLMKQGIDPSTHKPLSESENKITNEKNYRDEASMMQ
SSQAHHIEFATTETEKPFTVDRGCRDSSDNDTLAKSLAESLHSKPNYDPV
FLLEFQERINPEGYNSNLMGHFQQYQPSYDHDQFEAKPNFGFSSMPELTN
YDIQGIAEAEFSANSASTLTSLLFSEVKECSSNSSIGTSTANAGFEMDKM
VGNHTTFPWDAANSLESLFQFSGIKTEESMEASQWQGQPQCSDDYISYQL
TSLSEDINAEIFHQI
Sequence Length:
365
Sequence Checksum:
0950a8a2f9543c472f4cca878a94f418
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017400068.1, derives from mRNA, XM_017400068.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017400068.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017400068.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438KB09 ((Transcription factor MYB86 {ECO:0000313|EMBL:RVX18406.1}))
HSP 1 Score: 405.986 bits (1042), Expect = 7.475e-139
Identity = 216/376 (57.45%), Postives = 270/376 (71.81%), Query Frame = 0
Match: A0A438KB09 ((Transcription factor MYB86 {ECO:0000313|EMBL:RVX18406.1}))
HSP 1 Score: 405.986 bits (1042), Expect = 7.475e-139
Identity = 216/376 (57.45%), Postives = 270/376 (71.81%), Query Frame = 0
Query: 1 MGRHPCCVKPKLRKGLWSPEEDEKLFNHIARFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQEEEDLILSLHQLLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPSTHKPLSESENKITNEKNYRDEASM--MQSSQAHHIEFATTETEKPFTVDR-GCRDSSDNDTLAKSLAESLHSKPNYDPVFLLEFQERINPEGYNSNLMGHFQQYQPSYDHDQFEAKPNFGFSSMPELTNYDIQGIAEAEFSANSASTLTSLLFSEVKECSSNSSIGTSTANAGFEMDKMVGNHTTFPWDAANSLESLFQF--SGIKTEESMEASQWQG---QPQCSDDYISYQLTSLSEDINA---EIFHQI 365
MGRH CC+K KLRKGLWSPEEDEKL+N+I RFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQ+EEDLI+SLHQ+LGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQG+DP+THKPL+E+E + + KN ++AS+ +Q + + E E+PF V+ C D L + +KP +DP+ EFQ ++P GY+SNL+ + Q +D +Q EA N GF+S+P LTN+D + E +FS NSAS + S F+E KE SSNSS TS AGF+++ M G + F WDA N LE+LFQ+ SGIK+EE ++ S W G Q S+D+ +Y LTSLSED+ ++F Q+
Sbjct: 1 MGRHSCCLKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIVSLHQVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGMDPNTHKPLNETE--VGDGKNCTEKASLQVLQPKGLPAVPSSAAEFEQPFMVNNSSCYDGG----LTEGSRVQFMNKPGFDPMSFFEFQAGVDPMGYSSNLLSQYHQTIRPFDQNQLEANSNVGFASLPGLTNFDQGNLTETDFSDNSASRMGSFFFNEAKESSSNSSNITSHP-AGFQINNM-GENVAFSWDAENKLEALFQYQISGIKSEE-LKPSSWYGDQVHSQNSEDFSNYPLTSLSEDLTGASFDVFQQM 367
BLAST of XM_017400068.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438EZ10 ((Transcription factor MYB86 {ECO:0000313|EMBL:RVW52991.1}))
HSP 1 Score: 399.053 bits (1024), Expect = 3.271e-134
Identity = 214/376 (56.91%), Postives = 269/376 (71.54%), Query Frame = 0
Match: A0A438EZ10 ((Transcription factor MYB86 {ECO:0000313|EMBL:RVW52991.1}))
HSP 1 Score: 399.053 bits (1024), Expect = 3.271e-134
Identity = 214/376 (56.91%), Postives = 269/376 (71.54%), Query Frame = 0
Query: 1 MGRHPCCVKPKLRKGLWSPEEDEKLFNHIARFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQEEEDLILSLHQLLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPSTHKPLSESENKITNEKNYRDEASM--MQSSQAHHIEFATTETEKPFTVDR-GCRDSSDNDTLAKSLAESLHSKPNYDPVFLLEFQERINPEGYNSNLMGHFQQYQPSYDHDQFEAKPNFGFSSMPELTNYDIQGIAEAEFSANSASTLTSLLFSEVKECSSNSSIGTSTANAGFEMDKMVGNHTTFPWDAANSLESLFQF--SGIKTEESMEASQWQG---QPQCSDDYISYQLTSLSEDINA---EIFHQI 365
MGRH CC+K KLRKGLWSPEEDEKL+N+I RFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQ+EEDLI+SLHQ+LGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKL+KQG+DP+THKPL+E+E + + KN ++AS+ +Q + + E E+PF ++ C D L + +KP +DP+ EFQ ++P G +SNL+ + Q +D +Q EA N GF+S+P LTN+D + E +FS NSAS + S F+E KE SSNSS TS AGF+++ M G + F WDA N LE+LFQ+ SGIK+EE ++ S W G Q S+D+ +Y LTSLSED+ ++F QI
Sbjct: 1 MGRHSCCLKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHQVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGMDPNTHKPLNETE--VGDGKNCTEKASLQVLQPKGLPAVPSSAAEFEQPFMLNNSSCYDGG----LTEGSRVQFMNKPGFDPMSFFEFQAGVDPMGCSSNLLSQYHQTIRPFDQNQLEANSNVGFASLPGLTNFDHGNLTETDFSDNSASRMGSFFFNEAKESSSNSSNITSHP-AGFQINNM-GENVAFSWDAENKLEALFQYQISGIKSEE-LKPSSWYGDQVHSQNSEDFSNYPLTSLSEDLTGASFDVFQQI 367
BLAST of XM_017400068.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BGB2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8540777.1}))
HSP 1 Score: 389.808 bits (1000), Expect = 1.439e-132
Identity = 218/376 (57.98%), Postives = 271/376 (72.07%), Query Frame = 0
Match: A0A5J5BGB2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8540777.1}))
HSP 1 Score: 389.808 bits (1000), Expect = 1.439e-132
Identity = 218/376 (57.98%), Postives = 271/376 (72.07%), Query Frame = 0
Query: 1 MGRHPCCVKPKLRKGLWSPEEDEKLFNHIARFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQEEEDLILSLHQLLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPSTHKPLSESENKITNEKNYRDEASMMQSSQAHHIEFATT---ETEKPFTVDRGCRDSSDNDTLAKSLAESLHSKPNYDPVFLLEFQERINPEGYNSNLMGHFQQYQPSYDHDQFEAKPNFGFSSMPELTNYDIQGIAEAEFSANSASTLTSLLFSEVKECSSNSSIGTSTANAGFEMDKMVGNHTTFPWDAANSLESLF--QFSGIKTEESMEASQWQ-GQPQC--SDDYISYQLTSLSEDI---NAEIFHQI 365
MGR+ CCVK KLRKGLWSPEEDEKL+N+I RFGVGCWSSVPKL GLQRCGKSCRLRWINYLRPDLKRGMFSQ+EEDLI+SLH++LGNRWAQIAAQLPGRTDNEIKNFWNS LKKKLMKQGIDP+THKP+S+ E + +EKN ++AS +QS+Q + + +T E E+ F V+ + + L ++ E SKP +DP+FL + Q I+P GYNSNL+ +QQ D + F++ PNFGFSSMP LTN D + E +FS NSAS ++ LF E KE SSNSS S +++ MV N F WD+ L+SLF QF+GI+ +E ++ S WQ GQ S+D+ SY LTSLSED+ N ++F QI
Sbjct: 1 MGRNSCCVKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLCGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLMKQGIDPNTHKPMSQIE--VRHEKNCTEKAS-LQSTQLNGVPTISTSSAEMEQAFHVN---NTNYYDGGLTEASREQFVSKPVFDPLFLFDLQAGIDPIGYNSNLLNQYQQALRPVDQNHFDSNPNFGFSSMPTLTNLDHGNMVEMDFSDNSASKMSGFLF-EAKESSSNSSNINSQTGL-IQINSMVEN-AAFSWDSETKLDSLFQYQFNGIRPDE-LKPSPWQEGQLHSHHSEDFSSYPLTSLSEDLTGANLDVFQQI 366
BLAST of XM_017400068.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BHN3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542259.1}))
HSP 1 Score: 389.423 bits (999), Expect = 1.476e-132
Identity = 217/378 (57.41%), Postives = 263/378 (69.58%), Query Frame = 0
Match: A0A5J5BHN3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542259.1}))
HSP 1 Score: 389.423 bits (999), Expect = 1.476e-132
Identity = 217/378 (57.41%), Postives = 263/378 (69.58%), Query Frame = 0
Query: 1 MGRHPCCVKPKLRKGLWSPEEDEKLFNHIARFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQEEEDLILSLHQLLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPSTHKPLSESENKITNEKNYRDEASMMQSSQAHHIEF--ATTETEKPFTV------DRGCRDSSDNDTLAKSLAESLHSKPNYDPVFLLEFQERINPEGYNSNLMGHFQQYQPSYDHDQFEAKPNFGFSSMPELTNYDIQGIAEAEFSANSASTLTSLLFSEVKECSSNSSIGTSTANAGFEMDKMVGNHTTFPWDAANSLESLF--QFSGIKTEESMEASQWQGQPQCSDDYISYQLTSLSEDI---NAEIFHQI 365
MGR CCVK K RKGLWSPEEDEKLFN+I RFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQ+EEDLIL LH++LGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMK+GIDP+THKPL++ E + +EKN +++S +Q Q + I ++ E E+ F V DRG L ++ E SKP +DP+ L +FQ ++P GYNSNL +QQ D + F+A PNFGF+SMP LTN+D +AE +FS NS S + S LF+EVKE SSNSS GF M + + F WDA L+S F QF+GIK+EE + + WQ + + SY LTSLSED+ N ++F QI
Sbjct: 1 MGRPSCCVKQKFRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLILGLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKKGIDPNTHKPLNKIE--VRDEKNCTEKSS-LQLPQLNEITTLSSSAEMEQAFHVNNTGYCDRG---------LIEASREQYLSKPVFDPLLLFDFQVALDPIGYNSNLRTQYQQTLRPVDQNHFQANPNFGFTSMPTLTNFDHGNMAETDFSDNSTSRMNSFLFNEVKESSSNSS--NVNCQTGFHMVE----NAAFSWDAETKLDSFFQYQFNGIKSEEE-KPNPWQ------EGFSSYTLTSLSEDLTGANLDVFQQI 353
BLAST of XM_017400068.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UJF9 ((Uncharacterized protein {ECO:0000313|EMBL:OAY30823.1}))
HSP 1 Score: 388.652 bits (997), Expect = 4.626e-132
Identity = 209/374 (55.88%), Postives = 267/374 (71.39%), Query Frame = 0
Match: A0A2C9UJF9 ((Uncharacterized protein {ECO:0000313|EMBL:OAY30823.1}))
HSP 1 Score: 388.652 bits (997), Expect = 4.626e-132
Identity = 209/374 (55.88%), Postives = 267/374 (71.39%), Query Frame = 0
Query: 1 MGRHPCCVKPKLRKGLWSPEEDEKLFNHIARFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQEEEDLILSLHQLLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPSTHKPLSESENKITNEKNYRDEASMMQSSQAHHIEFATTETEKP-FTVDRGCRDSSDNDTLAKSLAESLHSKPNYDPVFLLEFQERINPEGYNSNLMGHFQQYQPSYDHDQFEAKPNFGFSSMPELTNYDIQGIAEAEFSANSASTLTSLLFSEVKECSSNSSIGTSTANAGFEMDKMVGNHTTFPWDAANSLESLFQF--SGIKTEESMEASQWQ-GQ--PQCSDDYISYQLTSLSEDI---NAEIFHQI 365
MGRH CC+K KLRKGLWSPEEDEKL+N+I RFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQ+EEDLI+SLH++LGNRWAQIAAQLPGRTDNEIKNFWNS LKKKLMKQGIDP+THKP+S++ ++ EKN D+AS +Q Q+ + + ++P F ++ S + L ++ + K YDP+ EF + P GYNS++ +D +QFE +F F+SMP LT++D ++ +FS NSAS ++S+ +E KE SSNSS ++ G++M+ MV N+ F WD N ++S+FQF +GIKTEE + S WQ GQ PQ S D+ SY LTSLSED+ N ++FHQI
Sbjct: 1 MGRHSCCLKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLMKQGIDPTTHKPISDAL-EVKEEKNCTDKAS-LQIPQSKTLPILSNSAQEPTFLINDTTYYS---NGLTETSRDQFMDKQAYDPLSYFEFSAGVEPSGYNSSVPALQHPNLRPFDQNQFETSSDFAFTSMPSLTSFDHGSMSATDFSDNSASRMSSMFLNEAKESSSNSS--NISSYTGYQMNSMVENNAAFSWDGENKIDSVFQFQVNGIKTEE-LRPSPWQEGQLHPQNSIDFSSYPLTSLSEDLTGANFDVFHQI 366
BLAST of XM_017400068.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836Y059 ((Transcription factor MYB {ECO:0000313|EMBL:KAG5234165.1}))
HSP 1 Score: 385.956 bits (990), Expect = 6.169e-131
Identity = 217/378 (57.41%), Postives = 263/378 (69.58%), Query Frame = 0
Match: A0A836Y059 ((Transcription factor MYB {ECO:0000313|EMBL:KAG5234165.1}))
HSP 1 Score: 385.956 bits (990), Expect = 6.169e-131
Identity = 217/378 (57.41%), Postives = 263/378 (69.58%), Query Frame = 0
Query: 1 MGRHPCCVKPKLRKGLWSPEEDEKLFNHIARFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQEEEDLILSLHQLLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPSTHKPLSESENKITNEKNYRDEASM-MQSSQAHHIEFATTETEKPFTVDRGCRDSSDNDTLAKSLAESLHSKPNYDPVFLLEFQERINPEGYNSNLMGHFQQYQPSYDHDQFEAKPNFGFSSMPELTNYDIQGIAEAEFSANSASTLTSLLFSEVKECSSNSSIGTSTANAGFEMDKMVGNHTTF-PWDAANSLESLFQF---SGIKTEESMEASQWQ--GQ---PQCSDDYISYQLTSLSEDI---NAEIFHQI 365
MGRH CC+K KLRKGLWSPEEDEKLFN+I RFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG+FSQ+EE+LI+SLH++LGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDP+THKPLS+ E + EK ++AS+ + S I + E F + +SS L ++ E SK YDP+ EF I+P GYN N+ + D +QFE PNF F+SMP LT++D G+ AEFS NSAS L+S+ +E KE SSNSS + AG++M MV N F WD+ + LES+FQ+ +GIKT E ++ + WQ GQ Q S D+ SY LTSLSED+ N + FHQI
Sbjct: 1 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGLFSQQEENLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPLSQEE--VKEEKTCTEKASLQIPRSNGLPILSNLSAQEPAFITNDTAYNSSG---LTEASREQFISKQAYDPIAYFEFPPSIDPVGYNPNISSVYHPTVRPLDQNQFETSPNFVFTSMPSLTSFDRGGMRGAEFSDNSASRLSSMFLNEAKESSSNSS--NISNYAGYQMSSMVENAAGFSSWDSDDKLESVFQYHQVNGIKTGE-LKPTPWQEAGQLHTHQNSVDFSSYPLTSLSEDLTGANFDGFHQI 370
BLAST of XM_017400068.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6GSI2 ((Uncharacterized protein {ECO:0000313|EMBL:CCB42947.1}))
HSP 1 Score: 384.415 bits (986), Expect = 1.705e-130
Identity = 201/342 (58.77%), Postives = 250/342 (73.10%), Query Frame = 0
Match: F6GSI2 ((Uncharacterized protein {ECO:0000313|EMBL:CCB42947.1}))
HSP 1 Score: 384.415 bits (986), Expect = 1.705e-130
Identity = 201/342 (58.77%), Postives = 250/342 (73.10%), Query Frame = 0
Query: 1 MGRHPCCVKPKLRKGLWSPEEDEKLFNHIARFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQEEEDLILSLHQLLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPSTHKPLSESENKITNEKNYRDEASM--MQSSQAHHIEFATTETEKPFTVDR-GCRDSSDNDTLAKSLAESLHSKPNYDPVFLLEFQERINPEGYNSNLMGHFQQYQPSYDHDQFEAKPNFGFSSMPELTNYDIQGIAEAEFSANSASTLTSLLFSEVKECSSNSSIGTSTANAGFEMDKMVGNHTTFPWDAANSLESLFQF--SGIKTEESMEASQWQG 337
MGRH CC+K KLRKGLWSPEEDEKL+N+I RFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQ+EED+I+SLHQ+LGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKL+KQG+DP+THKPL+E+E + + KN ++AS+ +Q + + E E+PF V+ C D L + +KP +DP+ EFQ ++P GY+SNL+ + Q +D +Q EA N GF+S+P LTN+D + E +FS NSAS + S F+E KE SSNSS TS AGF+++ M G + F WDA N LE+LFQ+ SGIK+EE ++ S W G
Sbjct: 1 MGRHSCCLKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDIIISLHQVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGMDPNTHKPLNETE--VGDGKNCTEKASLQVLQPKGLPAVPSSAAEFEQPFMVNNSSCYDGG----LTEGSRVQFMNKPGFDPMSFFEFQAGVDPMGYSSNLLSQYHQTIRPFDQNQLEANSNVGFASLPGLTNFDQGNLTETDFSDNSASRMGSFFFNEAKESSSNSSNITSHP-AGFQINNM-GENVAFSWDAENKLEALFQYQISGIKSEE-LKPSSWYG 333
BLAST of XM_017400068.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5KPJ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAB5532036.1}))
HSP 1 Score: 384.415 bits (986), Expect = 2.187e-130
Identity = 216/378 (57.14%), Postives = 263/378 (69.58%), Query Frame = 0
Match: A0A5N5KPJ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAB5532036.1}))
HSP 1 Score: 384.415 bits (986), Expect = 2.187e-130
Identity = 216/378 (57.14%), Postives = 263/378 (69.58%), Query Frame = 0
Query: 1 MGRHPCCVKPKLRKGLWSPEEDEKLFNHIARFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQEEEDLILSLHQLLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPSTHKPLSESENKITNEKNYRDEASM-MQSSQAHHIEFATTETEKPFTVDRGCRDSSDNDTLAKSLAESLHSKPNYDPVFLLEFQERINPEGYNSNLMGHFQQYQPSYDHDQFEAKPNFGFSSMPELTNYDIQGIAEAEFSANSASTLTSLLFSEVKECSSNSSIGTSTANAGFEMDKMVGNHTTF-PWDAANSLESLFQF---SGIKTEESMEASQWQ--GQ---PQCSDDYISYQLTSLSEDI---NAEIFHQI 365
MGRH CC+K KLRKGLWSPEEDEKLFN+I RFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG+FSQ+EE+LI+SLH++LGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDP+THKPLS+ E + EK ++AS+ + S I + E F + +SS L ++ E +K YDP+ EF I+P GYN N+ + D +QFE PNF F+SMP LT++D G+ AEFS NSAS L+S+ +E KE SSNSS + AG++M MV N F WD+ + LES+FQ+ +GIKT E ++ + WQ GQ Q S D+ SY LTSLSED+ N + FHQI
Sbjct: 1 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGLFSQQEENLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPTTHKPLSQEE--VKEEKTCTEKASLQIPRSNGLPILSNLSAQEPAFITNDTAYNSSG---LTEASREQFINKQAYDPIAYFEFPPSIDPVGYNPNISSVYHPTVRPLDQNQFETSPNFVFTSMPSLTSFDRGGMRGAEFSDNSASRLSSMFLNEAKESSSNSS--NISNYAGYQMSSMVENAAGFSSWDSDDKLESVFQYHQVNGIKTGE-LKQTPWQEAGQLHTHQNSVDFSSYPLTSLSEDLTGANFDGFHQI 370
BLAST of XM_017400068.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1AYJ0 ((transcription factor MYB86-like {ECO:0000313|RefSeq:XP_021292053.1}))
HSP 1 Score: 384.03 bits (985), Expect = 3.453e-130
Identity = 218/381 (57.22%), Postives = 265/381 (69.55%), Query Frame = 0
Match: A0A6J1AYJ0 ((transcription factor MYB86-like {ECO:0000313|RefSeq:XP_021292053.1}))
HSP 1 Score: 384.03 bits (985), Expect = 3.453e-130
Identity = 218/381 (57.22%), Postives = 265/381 (69.55%), Query Frame = 0
Query: 1 MGRHPCCVKPKLRKGLWSPEEDEKLFNHIARFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQEEEDLILSLHQLLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPSTHKPLSESENKITNEKNYRDEASMMQSSQAHHIEFATTET----EKPFTV-DRGCRDSSDNDTLAKSLAESLHSKPNYDPVFLLEFQERINPEGYNSNLMGHFQQYQPS---YDHDQFEAKPNFGFSSMPELTNYDIQGIAEAEFSANSASTL-TSLLFSEVKECSSNSSIGTSTANAGFEMDKMVGNHTTFPWDAANSLESLFQF--SGIKTEESMEASQWQGQ--PQCSDDYISYQLTSLSEDINA---EIFHQI 365
MGRH CC+K KLRKGLWSPEEDEKLFN+I RFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQ+EEDLI+SLH++LGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDP+THKPL S N E+ R ++ ++Q Q+ + + + E F V D GC S L ++ E +K YDP+ ++ Q I+P GYNSNL+ QY PS +D + FE +F F+SMP LTN+D ++ +FS NS S + TS L +E KE SSNSS ++ GF+M+ MV N F WDA N L+S+FQF +GIK+EE S +GQ S D+ SY LTSLSED+ A ++F QI
Sbjct: 1 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPTTHKPL--SNNVEAKEEKNRTDSVVLQIPQSKGLSASAVSSFAAHEPTFLVSDSGCYSSG----LTEASREQFINKQVYDPLAYIDLQAGIDPSGYNSNLV---PQYHPSVRPFDQNHFETNSSFTFTSMPSLTNFDHGNMSGTDFSDNSVSRISTSFLLNEAKESSSNSS--NISSYTGFQMNSMVEN-GAFSWDAENKLDSMFQFQVNGIKSEELKPGSWQEGQLHNHNSVDFSSYPLTSLSEDLTAANFDVFQQI 369
BLAST of XM_017400068.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A6KW83 ((Uncharacterized protein {ECO:0000313|EMBL:KAF2293280.1}))
HSP 1 Score: 382.874 bits (982), Expect = 9.616e-130
Identity = 206/374 (55.08%), Postives = 266/374 (71.12%), Query Frame = 0
Match: A0A6A6KW83 ((Uncharacterized protein {ECO:0000313|EMBL:KAF2293280.1}))
HSP 1 Score: 382.874 bits (982), Expect = 9.616e-130
Identity = 206/374 (55.08%), Postives = 266/374 (71.12%), Query Frame = 0
Query: 1 MGRHPCCVKPKLRKGLWSPEEDEKLFNHIARFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQEEEDLILSLHQLLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPSTHKPLSESENKITNEKNYRDEASM-MQSSQAHHIEFATTETEKPFTVDRGCRDSSDNDTLAKSLAESLHSKPNYDPVFLLEFQERINPEGYN-SNLMGHFQQYQPSYDHDQFEAKPNFGFSSMPELTNYDIQGIAEAEFSANSASTLTSLLFSEVKECSSNSSIGTSTANAGFEMDKMVGNHTTFPWDAANSLESLFQF--SGIKTEESMEASQWQGQ--PQCSDDYISYQLTSLSED---INAEIFHQI 365
MGRH CC+K KLRKGLWSPEEDEKL+N+I RFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQ+EEDL++SLH++LGNRWAQIAA+LPGRTDNEIKNFWNSCLKKKLMKQG+DP+THKP+SE+ ++ EKN +D+AS+ + S+ + TT E F ++ + + L ++ E +K YDP+ EF P GYN SN+ G +D + FE NF F+SMP LT++D ++ +FS NSAS ++S+ +E KE SSNSS ++ G++M++MV N+ F WDA N ++ +FQF +GIK EE ++ +GQ Q S D+ SY LTSLSED +N E++HQI
Sbjct: 1 MGRHSCCLKQKLRKGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLVISLHEVLGNRWAQIAAELPGRTDNEIKNFWNSCLKKKLMKQGLDPATHKPISEAL-QVKEEKNCKDKASLQIPPSKGLPVVSNTTIQEPTFLIN---DTTYYGNGLTETSREQFMNKQVYDPLSYFEFSAGFEPCGYNSSNIPGLQHPNLRPFDQNHFERSSNFSFTSMPSLTSFDNGSLSATDFSYNSASRMSSMFLNEAKESSSNSS--NISSYTGYQMNRMVENNAAFSWDADNKIDCVFQFPMNGIKMEELRQSPWEEGQLHTQNSVDFSSYPLTSLSEDLAGVNFEVYHQI 368
| Match Name | Stats | Description |
|---|---|---|
| A0A438KB09 | E-Value: 7.475e-139, PID: 57.45 | (Transcription factor MYB86 {ECO:0000313|EMBL:RVX1... [more] |
| A0A438EZ10 | E-Value: 3.271e-134, PID: 56.91 | (Transcription factor MYB86 {ECO:0000313|EMBL:RVW5... [more] |
| A0A5J5BGB2 | E-Value: 1.439e-132, PID: 57.98 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8540... [more] |
| A0A5J5BHN3 | E-Value: 1.476e-132, PID: 57.41 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8542... [more] |
| A0A2C9UJF9 | E-Value: 4.626e-132, PID: 55.88 | (Uncharacterized protein {ECO:0000313|EMBL:OAY3082... [more] |
| A0A836Y059 | E-Value: 6.169e-131, PID: 57.41 | (Transcription factor MYB {ECO:0000313|EMBL:KAG523... [more] |
| F6GSI2 | E-Value: 1.705e-130, PID: 58.77 | (Uncharacterized protein {ECO:0000313|EMBL:CCB4294... [more] |
| A0A5N5KPJ5 | E-Value: 2.187e-130, PID: 57.14 | (Uncharacterized protein {ECO:0000313|EMBL:KAB5532... [more] |
| A0A6J1AYJ0 | E-Value: 3.453e-130, PID: 57.22 | (transcription factor MYB86-like {ECO:0000313|RefS... [more] |
| A0A6A6KW83 | E-Value: 9.616e-130, PID: 55.08 | (Uncharacterized protein {ECO:0000313|EMBL:KAF2293... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |