MALSSPSTLIFSATSSTTAASVDNLWPCSLSKSSLSRNPPAKQSSDVVST
SSTAKWRTRVSFFPAFLNNPKKNAKLIKEELLEAIAPLDRGAEATPEDQQ
IIDQITRRLEAVNPTKAPLKSELLNGKWELLYTTSVSILQIKRPKFLRSK
VNYQAINADILRAQNMESGPFFNQVTADLTPVSDKKVGVKFDYFKIGGLI
PVKAPERAVGSLEITYLDDELRVSRGDKGNLFILKMIDPSYRVPASG
| Relationships |
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| The polypeptide, XM_017359511.1, derives from mRNA, XM_017359511.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A5B7B516 (PAP_fibrillin domain-containing protein {ECO:0000259|Pfam:PF04755})
HSP 1 Score: 336.265 bits (861), Expect = 3.562e-115
Identity = 174/248 (70.16%), Postives = 198/248 (79.84%), Query Frame = 0
Query: 1 MALSS--PSTLIFSATSSTTAASVDNLWPCSLSKSSLSRNPPAKQSSDVVSTSS--TAKWRTRVSFFPAFLNNPKKNAKLIKEELLEAIAPLDRGAEATPEDQQIIDQITRRLEAVNPTKAPLKSELLNGKWELLYTTSVSILQIKRPKFLRSKVNYQAINADILRAQNMESGPFFNQVTADLTPVSDKKVGVKFDYFKIGGLIPVKAPERAVGSLEITYLDDELRVSRGDKGNLFILKMIDPSYRVP 244
MALSS P T++ +A SST +A S + S P +Q + +ST+S T KWRT VSFFP FLN K+ K IKEELLEAIAPLDRGA+ATPEDQQ IDQI R+LEAVNPTK PLKS+LLNGKWEL+YTTS SILQ +RPKFLRS+ N+QAINAD LRAQNMES PFFNQVTADLTP++ +KV VKFD+FKI GLIP+KAP RA G LEITYLD+ELRVSRGDKGNLFILKM+DPSYRVP
Sbjct: 1 MALSSHSPHTVLTTAQSSTHSAPKLLHSHSSPTTFSFPTKPITQQHALSLSTTSVDTDKWRTNVSFFPTFLNKKAKDPKPIKEELLEAIAPLDRGADATPEDQQRIDQIARKLEAVNPTKNPLKSDLLNGKWELIYTTSRSILQTQRPKFLRSRTNFQAINADTLRAQNMESWPFFNQVTADLTPLNARKVAVKFDFFKIAGLIPIKAPGRAHGELEITYLDEELRVSRGDKGNLFILKMVDPSYRVP 248
Match: A0A022R4H8 (PAP_fibrillin domain-containing protein {ECO:0000259|Pfam:PF04755})
HSP 1 Score: 335.88 bits (860), Expect = 7.778e-115
Identity = 165/219 (75.34%), Postives = 185/219 (84.47%), Query Frame = 0
Query: 28 CSLSKSSLSRNPPAKQSSDVVSTSSTAKWRTRVSFFPAFLN-NPKKNAKLIKEELLEAIAPLDRGAEATPEDQQIIDQITRRLEAVNPTKAPLKSELLNGKWELLYTTSVSILQIKRPKFLRSKVNYQAINADILRAQNMESGPFFNQVTADLTPVSDKKVGVKFDYFKIGGLIPVKAPERAVGSLEITYLDDELRVSRGDKGNLFILKMIDPSYRVPA 245
C+LS ++ + + PA ++ KWRTRVSFF FLN N K+A IKEELLEAIAPLDRGAEATPEDQQ IDQI R+LEA+NPTK PLKS LL+GKWEL+YTTS SILQIKRPKFLRS+ NYQAINAD LRAQNMESGPFFNQVTADLTP++ KKV VKFDYFK+GG+IPVKAP+ A G LEITYLD+ELRVSRGDKGNLFILKMIDPSYR+PA
Sbjct: 47 CTLSITNTNYHAPA--------INNVEKWRTRVSFFTDFLNKNKSKSADAIKEELLEAIAPLDRGAEATPEDQQTIDQIARKLEAINPTKEPLKSSLLSGKWELIYTTSQSILQIKRPKFLRSRTNYQAINADTLRAQNMESGPFFNQVTADLTPLNTKKVAVKFDYFKLGGVIPVKAPDTARGELEITYLDEELRVSRGDKGNLFILKMIDPSYRIPA 257
Match: A0A068TNK3 (PAP_fibrillin domain-containing protein {ECO:0000259|Pfam:PF04755})
HSP 1 Score: 327.02 bits (837), Expect = 2.211e-111
Identity = 162/213 (76.06%), Postives = 178/213 (83.57%), Query Frame = 0
Query: 32 KSSLSRNPPAKQSSDVVSTSSTAKWRTRVSFFPAFLNNPKKNAKLIKEELLEAIAPLDRGAEATPEDQQIIDQITRRLEAVNPTKAPLKSELLNGKWELLYTTSVSILQIKRPKFLRSKVNYQAINADILRAQNMESGPFFNQVTADLTPVSDKKVGVKFDYFKIGGLIPVKAPERAVGSLEITYLDDELRVSRGDKGNLFILKMIDPSYRVP 244
KS LS +PP+ + + KWRT +SFFPAFL N K+AK IKEELLEAIAPLDRGAEATPEDQQ IDQITR+LEAV+P K PLKS+LLNGKWEL+YTTS SILQ +RPK LRSK NYQAIN D LRAQNMES PFFNQVTADLTP++ +KV VKFDYFKI GLIPVKAP RA G LEITYLD+ELRVSRGD GNLFILKM+DPSYRVP
Sbjct: 48 KSILSTSPPS------FTWVPSQKWRTYISFFPAFLKNKAKDAKAIKEELLEAIAPLDRGAEATPEDQQSIDQITRKLEAVSPIKEPLKSDLLNGKWELIYTTSQSILQTERPKILRSKTNYQAINVDTLRAQNMESCPFFNQVTADLTPLNARKVAVKFDYFKIAGLIPVKAPGRARGELEITYLDEELRVSRGDLGNLFILKMVDPSYRVP 254
Match: A0A1J6IGM0 ((Putative plastid-lipid-associated protein 4, chloroplastic {ECO:0000313|EMBL:OIS99671.1}))
HSP 1 Score: 325.479 bits (833), Expect = 6.137e-111
Identity = 166/244 (68.03%), Postives = 188/244 (77.05%), Query Frame = 0
Query: 1 MALSSPSTLIFSATSSTTAASVDNLWPCSLSKSSLSRNPPAKQSSDVVSTSSTAKWRTRVSFFPAFLNNPKKNAKLIKEELLEAIAPLDRGAEATPEDQQIIDQITRRLEAVNPTKAPLKSELLNGKWELLYTTSVSILQIKRPKFLRSKVNYQAINADILRAQNMESGPFFNQVTADLTPVSDKKVGVKFDYFKIGGLIPVKAPERAVGSLEITYLDDELRVSRGDKGNLFILKMIDPSYRVP 244
MALSS + SST+ S+ + S S S +N P+ S ++ KWRT VSFFPAF N K+ IK+ELLEAIAPLDRGA+ATPEDQQIIDQI R+LEA NPTK PLKS LLNGKWEL+YTTS SILQ +RPK LRS+VNYQAIN D LRAQNME PFFNQVTADLTP++ +KV VKFDYFKIGG+IPVKAP RA G LEITYLD+ELRVSRGD GNLF+LKM+DPSYRVP
Sbjct: 1 MALSSLLSPQPVQVSSTSTHSIPKHYHFSHSTSVSLQNTPSFTSFPTITCPQNQKWRTNVSFFPAFFNK-TKDPTPIKQELLEAIAPLDRGADATPEDQQIIDQIARKLEACNPTKEPLKSNLLNGKWELIYTTSKSILQTQRPKILRSRVNYQAINGDTLRAQNMEGWPFFNQVTADLTPLNSRKVAVKFDYFKIGGIIPVKAPGRARGELEITYLDEELRVSRGDLGNLFVLKMVDPSYRVP 243
Match: A0A445JGJ8 ((Putative plastid-lipid-associated protein 4, chloroplastic isoform A {ECO:0000313|EMBL:RZB97585.1}))
HSP 1 Score: 325.094 bits (832), Expect = 7.529e-111
Identity = 165/244 (67.62%), Postives = 190/244 (77.87%), Query Frame = 0
Query: 1 MALSSPSTLIFSATSSTTAASVDNLWPCSLSKSSLSRNPPAKQSSDVVSTSSTAKWRTRVSFFPAFLNNPKKNAKLIKEELLEAIAPLDRGAEATPEDQQIIDQITRRLEAVNPTKAPLKSELLNGKWELLYTTSVSILQIKRPKFLRSKVNYQAINADILRAQNMESGPFFNQVTADLTPVSDKKVGVKFDYFKIGGLIPVKAPERAVGSLEITYLDDELRVSRGDKGNLFILKMIDPSYRVP 244
MALSSPS +FSA ++T + + P SLS S N + V+ + KWRT+VSFF +FL K+AK+IKEELLEAIAPLDRGA+ATP+DQQ +DQI R LEAV P K PLKS LL+GKWEL+YTTS SILQ KRPK LRS NYQAIN D LRAQNMES PFFNQVTADLTP++ +KV VKFD FKIGG+IP+KAP RA G LEITYLD+ELR+SRGDKGNLFILKM+DPSYRVP
Sbjct: 1 MALSSPS--LFSAVNATYSVPHFHALPLSLSSSYFPINV-RPSTHHVLVSDHNHKWRTKVSFFTSFLKQKGKDAKIIKEELLEAIAPLDRGADATPQDQQTVDQIARELEAVTPIKEPLKSNLLDGKWELIYTTSQSILQTKRPKLLRSVANYQAINVDTLRAQNMESWPFFNQVTADLTPLNPRKVAVKFDTFKIGGIIPIKAPGRARGELEITYLDEELRLSRGDKGNLFILKMVDPSYRVP 241
Match: C6T0F2 (PAP_fibrillin domain-containing protein {ECO:0000259|Pfam:PF04755})
HSP 1 Score: 325.094 bits (832), Expect = 7.529e-111
Identity = 165/244 (67.62%), Postives = 190/244 (77.87%), Query Frame = 0
Query: 1 MALSSPSTLIFSATSSTTAASVDNLWPCSLSKSSLSRNPPAKQSSDVVSTSSTAKWRTRVSFFPAFLNNPKKNAKLIKEELLEAIAPLDRGAEATPEDQQIIDQITRRLEAVNPTKAPLKSELLNGKWELLYTTSVSILQIKRPKFLRSKVNYQAINADILRAQNMESGPFFNQVTADLTPVSDKKVGVKFDYFKIGGLIPVKAPERAVGSLEITYLDDELRVSRGDKGNLFILKMIDPSYRVP 244
MALSSPS +FSA ++T + + P SLS S N + V+ + KWRT+VSFF +FL K+AK+IKEELLEAIAPLDRGA+ATP+DQQ +DQI R LEAV P K PLKS LL+GKWEL+YTTS SILQ KRPK LRS NYQAIN D LRAQNMES PFFNQVTADLTP++ +KV VKFD FKIGG+IP+KAP RA G LEITYLD+ELR+SRGDKGNLFILKM+DPSYRVP
Sbjct: 1 MALSSPS--LFSAVNATYSVPHFHALPLSLSSSYFPINV-RPSTHHVLVSDHNHKWRTKVSFFTSFLKQKGKDAKIIKEELLEAIAPLDRGADATPQDQQTVDQIARELEAVTPIKEPLKSNLLDGKWELIYTTSQSILQTKRPKLLRSVANYQAINVDTLRAQNMESWPFFNQVTADLTPLNPRKVAVKFDTFKIGGIIPIKAPGRARGELEITYLDEELRLSRGDKGNLFILKMVDPSYRVP 241
Match: A0A314XLU9 ((Putative plastid-lipid-associated protein 4 chloroplastic isoform X1 {ECO:0000313|EMBL:PQP93028.1}))
HSP 1 Score: 323.939 bits (829), Expect = 2.843e-110
Identity = 171/252 (67.86%), Postives = 197/252 (78.17%), Query Frame = 0
Query: 1 MALSS---PSTLIFSATSSTTAASVDNLWPCS--LSKSSLSRNPPAKQS---SDVVSTSSTAKWRTRVSFFPAFLNNPKKNAKLIKEELLEAIAPLDRGAEATPEDQQIIDQITRRLEAVNPTKAPLKSELLNGKWELLYTTSVSILQIKRPKFLRSKVNYQAINADILRAQNMESGPFFNQVTADLTPVSDKKVGVKFDYFKIGGLIPVKAPERAVGSLEITYLDDELRVSRGDKGNLFILKMIDPSYRVP 244
MALSS P L+ + T S ++ S L P LS S P + + STS++ KWR +VSFFPAFL+ K+AK +KEELL+AIA LDRGA+ATPEDQQ +DQI R+LEAVNPTK PLKS+LLNGKWEL+YTTS SILQ +RPKFLRS+VNYQAINAD LRAQNMES P FNQVTADLTP++ +KV VKFDYFKI GLIPVKAP RA G LEITYLD+E+RVSRGDKGNLFILKM+DPSYRVP
Sbjct: 1 MALSSSPLPPKLL-TTTQSPSSLSTPKLLPSHSPLSSFSFPTKPTTTHTIHLQTLSSTSASDKWRAKVSFFPAFLSK-GKDAKTLKEELLDAIASLDRGADATPEDQQTVDQIARKLEAVNPTKEPLKSDLLNGKWELIYTTSKSILQTQRPKFLRSRVNYQAINADTLRAQNMESWPTFNQVTADLTPLNARKVAVKFDYFKIAGLIPVKAPGRARGELEITYLDEEIRVSRGDKGNLFILKMVDPSYRVP 250
Match: A0A6N2M9C3 (PAP_fibrillin domain-containing protein {ECO:0000259|Pfam:PF04755})
HSP 1 Score: 323.168 bits (827), Expect = 5.345e-110
Identity = 174/250 (69.60%), Postives = 198/250 (79.20%), Query Frame = 0
Query: 1 MALSS--PSTLIFSATSSTTAASVDNLWPCSLSKSSLSRNPPAKQSS--DVVSTSSTA--KWRTRVSFFPAFLNNPKKNAKLIKEELLEAIAPLDRGAEATPEDQQIIDQITRRLEAVNPTKAPLKSELLNGKWELLYTTSVSILQIKRPKFLRSKVNYQAINADILRAQNMESGPFFNQVTADLTPVSDKKVGVKFDYFKIGGLIPVKAPERAVGSLEITYLDDELRVSRGDKGNLFILKMIDPSYRVP 244
MALSS S I +A+ +T + + L L SS + P+ Q+S ++ S+ ST WR RVSFFPAFL K+AK++KEELLEAI PLDRGA+A PEDQQ +D+I R+LEAVNPTK PLKS+LLNGKWELLYTTS SILQ +RPK LRSK NYQAINAD LRAQNMES PFFNQVTADLTP+S KKV VKFD+FKI GLIPVKAPERA G LEITYLD+ELRVSRGDKGNLFILKM+DPSYRVP
Sbjct: 3 MALSSSPHSPAILTASQFSTHSPLPKLTTSHLFFSS---SKPSNQTSYFNLSSSYSTIDRSWRARVSFFPAFLKK-GKDAKVLKEELLEAIDPLDRGADAIPEDQQRVDEIARKLEAVNPTKEPLKSDLLNGKWELLYTTSQSILQTQRPKLLRSKTNYQAINADTLRAQNMESWPFFNQVTADLTPLSAKKVAVKFDFFKILGLIPVKAPERARGELEITYLDEELRVSRGDKGNLFILKMVDPSYRVP 248
Match: A0A5E4F3Q4 ((Full=PREDICTED: probable plastid-lipid-associated {ECO:0000313|EMBL:VVA21281.1}))
HSP 1 Score: 322.783 bits (826), Expect = 8.492e-110
Identity = 156/196 (79.59%), Postives = 175/196 (89.29%), Query Frame = 0
Query: 49 STSSTAKWRTRVSFFPAFLNNPKKNAKLIKEELLEAIAPLDRGAEATPEDQQIIDQITRRLEAVNPTKAPLKSELLNGKWELLYTTSVSILQIKRPKFLRSKVNYQAINADILRAQNMESGPFFNQVTADLTPVSDKKVGVKFDYFKIGGLIPVKAPERAVGSLEITYLDDELRVSRGDKGNLFILKMIDPSYRVP 244
STS++ KWR +VSFFPAFL+ K+AK +KEELL+AIA LDRGA+ATPEDQQ +DQI R+LEAVNPTK PLKS+LLNGKWEL+YTTS SILQ +RPKFLRS+VNYQAINAD LRAQNMES P FNQVTADLTP++ +KV VKFDYFKI GLIPVKAP RA G LEITYLD+ELRVSRGDKGNLFILKM+DPSYRVP
Sbjct: 56 STSASDKWRAKVSFFPAFLSK-GKDAKTLKEELLDAIASLDRGADATPEDQQTVDQIARKLEAVNPTKEPLKSDLLNGKWELIYTTSKSILQTQRPKFLRSRVNYQAINADTLRAQNMESWPTFNQVTADLTPLNARKVAVKFDYFKIAGLIPVKAPGRARGELEITYLDEELRVSRGDKGNLFILKMVDPSYRVP 250
Match: A0A6P6WES5 ((probable plastid-lipid-associated protein 4, chloroplastic isoform X1 {ECO:0000313|RefSeq:XP_027113106.1}))
HSP 1 Score: 322.398 bits (825), Expect = 1.240e-109
Identity = 160/213 (75.12%), Postives = 176/213 (82.63%), Query Frame = 0
Query: 32 KSSLSRNPPAKQSSDVVSTSSTAKWRTRVSFFPAFLNNPKKNAKLIKEELLEAIAPLDRGAEATPEDQQIIDQITRRLEAVNPTKAPLKSELLNGKWELLYTTSVSILQIKRPKFLRSKVNYQAINADILRAQNMESGPFFNQVTADLTPVSDKKVGVKFDYFKIGGLIPVKAPERAVGSLEITYLDDELRVSRGDKGNLFILKMIDPSYRVP 244
KS LS +PP+ + + KWRT +SFFPAF N K+AK IKEELLEAIAPLDRGAEATPEDQQ IDQITR+LEAV+P K PLKS+LLNGKWEL+YTTS SILQ +RPK LRSK NYQAIN D LRAQNMES PFFNQVTADLTP++ +KV VKFDYFKI GLIPVKAP RA G LEITYLD+ LRVSRGD GNLFILKM+DPSYRVP
Sbjct: 48 KSILSTSPPS------FTWLPSQKWRTYISFFPAFFKNKTKDAKAIKEELLEAIAPLDRGAEATPEDQQSIDQITRKLEAVSPIKEPLKSDLLNGKWELIYTTSQSILQTERPKILRSKTNYQAINVDTLRAQNMESCPFFNQVTADLTPLNARKVAVKFDYFKIAGLIPVKAPGRARGELEITYLDEALRVSRGDLGNLFILKMVDPSYRVP 254
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B516 | E-Value: 3.562e-115, PID: 70.16 | PAP_fibrillin domain-containing protein {ECO:00002... [more] |
| A0A022R4H8 | E-Value: 7.778e-115, PID: 75.34 | PAP_fibrillin domain-containing protein {ECO:00002... [more] |
| A0A068TNK3 | E-Value: 2.211e-111, PID: 76.06 | PAP_fibrillin domain-containing protein {ECO:00002... [more] |
| A0A1J6IGM0 | E-Value: 6.137e-111, PID: 68.03 | (Putative plastid-lipid-associated protein 4, chlo... [more] |
| A0A445JGJ8 | E-Value: 7.529e-111, PID: 67.62 | (Putative plastid-lipid-associated protein 4, chlo... [more] |
| C6T0F2 | E-Value: 7.529e-111, PID: 67.62 | PAP_fibrillin domain-containing protein {ECO:00002... [more] |
| A0A314XLU9 | E-Value: 2.843e-110, PID: 67.86 | (Putative plastid-lipid-associated protein 4 chlor... [more] |
| A0A6N2M9C3 | E-Value: 5.345e-110, PID: 69.60 | PAP_fibrillin domain-containing protein {ECO:00002... [more] |
| A0A5E4F3Q4 | E-Value: 8.492e-110, PID: 79.59 | (Full=PREDICTED: probable plastid-lipid-associated... [more] |
| A0A6P6WES5 | E-Value: 1.240e-109, PID: 75.12 | (probable plastid-lipid-associated protein 4, chlo... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |