Resource Type:
Polypeptide
Name:
XM_017399703.1
Identifier:
XM_017399703.1-protein
Sequence:
MAEEVPRSAGVVLRFNDQKGFGFIKPDDGGDDLFVHHSDIKSDGYRTLFP
GQSVEFYVLLDDNKTKAVEVTGPNGSPLQQRGSGGARAGGGGFGGARGGG
GFGGARGGGGGGECYTCGRLGHMARDCDGGARGGGGRGGAGYGGARGGGE
RGAGGYGGARGGGAGNGVCYNCGGIGHMARDCTSARNAAGGGGGIGGGAC
YTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGR
GGGSCYNCGEPGHYAKDCNTVRE
Sequence Length:
273
Sequence Checksum:
fe0f5cc19021ab3f7e878bcc60d6330f
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017399703.1, derives from mRNA, XM_017399703.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017399703.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017399703.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M0ZVR3 ((Cellular nucleic acid binding protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400009195}))
HSP 1 Score: 180.259 bits (456), Expect = 3.619e-53
Identity = 140/277 (50.54%), Postives = 165/277 (59.57%), Query Frame = 0
Match: M0ZVR3 ((Cellular nucleic acid binding protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400009195}))
HSP 1 Score: 180.259 bits (456), Expect = 3.619e-53
Identity = 140/277 (50.54%), Postives = 165/277 (59.57%), Query Frame = 0
Query: 1 MAEEVPRSAGVVLRFNDQKGFGFIKPDDGGDDLFVHHSDIKSDGYRTLFPGQSVEFYVLLDDNKTKAVEVTGPNGSPLQQRGSGGARAGGGGFGGARGGGGFGGARGGG------GGGECYTCGRLGHMARDCDGGARGGGGRGGAGYG-GARGGGERGAGGYGGARGGGAGNGVCYNCGGIGHMARDCTSARNAAGGGGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDCNT 270
MA E R G V +FN+ KG+GFIKPDDG +DLFVH S+IKSDGYR+L+ GQ VEF + + +K +A++VTGP+G+PL +G + G GG GG GG R G GECY CGR GH+ARDCD + GGGG G Y GA G R G GGGA +GVCY CGG GHMARDC SA G GGG GGGACYTCG GHLAR+CP G GGGG G G GG CYNCGE GH+A++C +
Sbjct: 1 MAVEASRMTGTVSKFNNPKGYGFIKPDDGSEDLFVHQSEIKSDGYRSLYEGQKVEFTMTVKGDKYQAIDVTGPDGAPLDSGRNGRGNSNSRGGGGYGHGGDDGGYRRNGNDGGYRSAGECYNCGRTGHLARDCDRNSGGGGGGRGGCYNCGAAGHLARDCDRSSGGGGGGASDGVCYTCGGYGHMARDCPSAGRVGGRGGG-GGGACYTCGAQGHLARDCPGGGGGGGS-------------------NFGRSGGGSGGSKCYNCGEAGHFARECTS 257
BLAST of XM_017399703.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0HRB1 ((Putative cold shock domain-containing protein 3-like {ECO:0000313|EMBL:JAP22134.1}))
HSP 1 Score: 177.563 bits (449), Expect = 3.570e-52
Identity = 140/277 (50.54%), Postives = 164/277 (59.21%), Query Frame = 0
Match: A0A0V0HRB1 ((Putative cold shock domain-containing protein 3-like {ECO:0000313|EMBL:JAP22134.1}))
HSP 1 Score: 177.563 bits (449), Expect = 3.570e-52
Identity = 140/277 (50.54%), Postives = 164/277 (59.21%), Query Frame = 0
Query: 1 MAEEVPRSAGVVLRFNDQKGFGFIKPDDGGDDLFVHHSDIKSDGYRTLFPGQSVEFYVLLDDNKTKAVEVTGPNGSPLQQRGSGGARAGGGGFGGARGGGGFGGARGGG------GGGECYTCGRLGHMARDCDGGARGGGGRGGAGYG-GARGGGERGAGGYGGARGGGAGNGVCYNCGGIGHMARDCTSARNAAGGGGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDCNT 270
MA E R G V +FN+ KG+GFIKPDDG +DLFVH S+IKSDGYR+L+ GQ VEF + + +K +A++VTGP+G+PL +G + G GG GG GG R G GECY CGR GH+ARDCD + GGGG G Y GA G R G GGGA GVCY CGG GHMARDC SA G GGG GGGACYTCG GHLAR+CP G GGGG G G GG CYNCGE GH+A++C +
Sbjct: 1 MAVEALRMTGTVSKFNNPKGYGFIKPDDGSEDLFVHQSEIKSDGYRSLYEGQKVEFTMTVKGDKYQAIDVTGPDGAPLDSGRNGRGNSNSRGGGGYGYGGDDGGYRRNGNDGGYRSAGECYNCGRTGHLARDCDRNSGGGGGGRGGCYNCGAAGHLARDCDRSSGGGGGGASGGVCYTCGGYGHMARDCPSAGRVGGRGGG-GGGACYTCGAQGHLARDCPGGGGGGGS-------------------NFGRSGGGSGGSKCYNCGEAGHFARECTS 257
BLAST of XM_017399703.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2BQG4 ((Uncharacterized protein {ECO:0000313|EMBL:TMW97024.1}))
HSP 1 Score: 178.333 bits (451), Expect = 4.486e-52
Identity = 146/307 (47.56%), Postives = 174/307 (56.68%), Query Frame = 0
HSP 2 Score: 61.6178 bits (148), Expect = 1.821e-8
Identity = 61/112 (54.46%), Postives = 66/112 (58.93%), Query Frame = 0
Match: A0A6N2BQG4 ((Uncharacterized protein {ECO:0000313|EMBL:TMW97024.1}))
HSP 1 Score: 178.333 bits (451), Expect = 4.486e-52
Identity = 146/307 (47.56%), Postives = 174/307 (56.68%), Query Frame = 0
Query: 1 MAEEVPRSAGVVLRFNDQKGFGFIKPDDGGDDLFVHHSDIKSDGYRTLFPGQSVEFYVLLDDNKTKAVEVTGPNGSPLQQRGSGGARAGGGGFGGARGGGGFGGARGGGGGGECYTCGRLGHMARDCDGGARGGGGRGGAGYGGARGGGERG-------AGGYGGARGGGAGNGVCYNC------------------------------GGIGHMARDCTSARNAAGGGGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDCNT 270
MA E R GVV RF++QKG+GFIKPDDG +DLFVH S+IKS+G+R+L+ GQ VEF V + +K +AV+VTGP+G+PL +GG GG G G G GGGGECY CGR+GHMARDCD + GGGG GG G G G G G GG G G+G G CY C GG+GHMARDC S R G G G G GACY CG GHLAR+C +GGG DRFG S+G DRFG + G GG CYNCGE GH+A++C +
Sbjct: 1 MAAEGTRLTGVVSRFSNQKGYGFIKPDDGTEDLFVHQSEIKSEGFRSLYEGQKVEFMVTGNGDKYQAVDVTGPDGAPLDGGRNGGGGGGGRGMGRGGDRRNGNGFLRSGGGGECYNCGRVGHMARDCDLVSGGGGGGGGGGGGACYTCGMTGHIARDCVGVGGGGGAGAGSGGGACYTCGMTGHIARDCDRSGGGGGGGGAGSGGCYNCGGLGHMARDCPSERRGGGSGAGGGSGACYNCGLPGHLARDCSRESGGG------DRFGRSSG----DRFGRSSG----GGSKCYNCGETGHFARECTS 293
HSP 2 Score: 61.6178 bits (148), Expect = 1.821e-8
Identity = 61/112 (54.46%), Postives = 66/112 (58.93%), Query Frame = 0
Query: 167 GVCYNCGGIGHMARDCTSARNAAGGGGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGG------RGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDCNTVR 272
G CYNCG +GHMARDC GGGGG GGGACYTCG GH+AR+C GGGG G G G R DR GG GGG G G G CYNCG GH A+DC + R
Sbjct: 112 GECYNCGRVGHMARDCDLVSGGGGGGGGGGGGACYTCGMTGHIARDCVGVGGGGGAGAGSGGGACYTCGMTGHIARDCDRSGGGGGGGGAGSGGCYNCGGLGHMARDCPSER 223
BLAST of XM_017399703.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KQ85 ((Cold shock protein 1 {ECO:0000313|EMBL:OIT31327.1}))
HSP 1 Score: 176.792 bits (447), Expect = 7.848e-52
Identity = 139/279 (49.82%), Postives = 168/279 (60.22%), Query Frame = 0
Match: A0A314KQ85 ((Cold shock protein 1 {ECO:0000313|EMBL:OIT31327.1}))
HSP 1 Score: 176.792 bits (447), Expect = 7.848e-52
Identity = 139/279 (49.82%), Postives = 168/279 (60.22%), Query Frame = 0
Query: 1 MAEEVPRSAGVVLRFNDQKGFGFIKPDDGGDDLFVHHSDIKSDGYRTLFPGQSVEFYVLLDDNKTKAVEVTGPNGSPLQQRGSGGARAGGGGFGGARGGGGFGGARGGGGGGECYTCGRLGHMARDCDGGARGGGGRGGAGYGGARGGG--------ERGAGGYGGARGGGAGNGVCYNCGGIGHMARDCTSA-RNAAGGGGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDCNT 270
MA E R GVV +FN+QKG+GFIKPDDG +DLFVH S+IKSDGYR+L+ GQ VEF +++ +K +A +VTGP+G+PL G R G G G G G GGGECYTCG+ GH+ARDCD + GGGG GG G G G +R +GG G R +GN CY CGG GHMARDC S+ R GGGGG G GACYTCG GH+AR+CP R GG +GG GGG G CYNCGE GH+A++C +
Sbjct: 1 MAVETSRMTGVVSKFNNQKGYGFIKPDDGSEDLFVHQSEIKSDGYRSLYEGQKVEFTMIVKGDKYQANDVTGPDGAPLDS-GRNNTRGGYGYGGNGYRRNGGGDGGYRSGGGECYTCGKTGHLARDCDRSSGGGGGGGGRGGGCYNCGASGHLARDCDRASGGGDGYR--RSGNDGCYTCGGYGHMARDCPSSGRLGGGGGGGGGNGACYTCGAQGHMARDCP-------------REGGVSGGSY---GRYGGGGGSGRGSKCYNCGEAGHFARECTS 260
BLAST of XM_017399703.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4D6KZC2 ((Cellular nucleic acid-binding protein {ECO:0000313|EMBL:QCD82075.1}))
HSP 1 Score: 173.711 bits (439), Expect = 9.016e-51
Identity = 137/271 (50.55%), Postives = 165/271 (60.89%), Query Frame = 0
HSP 2 Score: 37.7354 bits (86), Expect = 1.517e+0
Identity = 40/83 (48.19%), Postives = 46/83 (55.42%), Query Frame = 0
HSP 3 Score: 37.7354 bits (86), Expect = 1.602e+0
Identity = 17/29 (58.62%), Postives = 20/29 (68.97%), Query Frame = 0
Match: A0A4D6KZC2 ((Cellular nucleic acid-binding protein {ECO:0000313|EMBL:QCD82075.1}))
HSP 1 Score: 173.711 bits (439), Expect = 9.016e-51
Identity = 137/271 (50.55%), Postives = 165/271 (60.89%), Query Frame = 0
Query: 1 MAEEVPRSAGVVLRFNDQKGFGFIKPDDGGDDLFVHHSDIKSDGYRTLFPGQSVEFYVLL-DDNKTKAVEVTGPNGSPLQQRGSGGARAGGGGFGGARGGGGFGGARGGGGGGECYTCGRLGHMARDCDGGARGGGGRGGAGYGGARGG--GERGAGGYGGARGGGAGNGVCYNCGGIGHMARDCTSARNAAGGGGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDC 268
MAEE R GVV FN+ KGFGFIKPDDGG+DLFVH S I+SDGYRTL G VEF + D++KTKAV+VTG +G+PLQ R + G R G GFG R G G GGA CY CG GH+ARDC+ + GGG GG + G G G GGG G+G C+ CGG GHMARDC +A++ GGGG GG C+ CGE GHLAR+C + G GGG GG GGG G G +C+NCG+PGH+A++C
Sbjct: 1 MAEE--RFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGIDGAPLQPRAAAGNRGSGYGFGSRRNGAGSGGA-------TCYQCGDFGHLARDCNRSSNSGGGGGGGCFVCGGFGHLARDCVRGGNGGGGGGGGSGSCFRCGGFGHMARDCATAKSVGAGGGG-SGGGCFRCGEVGHLARDCGIEGGRYGGGNSG---------------GGGGGGGGAGKSTCFNCGKPGHFAREC 246
HSP 2 Score: 37.7354 bits (86), Expect = 1.517e+0
Identity = 40/83 (48.19%), Postives = 46/83 (55.42%), Query Frame = 0
Query: 192 GGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYD--RFGGNGGGAGRGGGSCYNCGEPGHYAKDCNTVR 272
G G GG CY CG+ GHLAR+C + GGGG G G G D R G GGG G G GSC+ CG GH A+DC T +
Sbjct: 98 GAGSGGATCYQCGDFGHLARDCNRSSNSGGGGGGGCFVCGGFGHLARDCVRGGNGGGGGGGGSGSCFRCGGFGHMARDCATAK 180
HSP 3 Score: 37.7354 bits (86), Expect = 1.602e+0
Identity = 17/29 (58.62%), Postives = 20/29 (68.97%), Query Frame = 0
Query: 241 FGGNGGGAGRGGGSCYNCGEPGHYAKDCN 269
FG GAG GG +CY CG+ GH A+DCN
Sbjct: 92 FGSRRNGAGSGGATCYQCGDFGHLARDCN 120
BLAST of XM_017399703.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5A7RA86 ((Cold shock protein 1 {ECO:0000313|EMBL:GER54643.1}))
HSP 1 Score: 172.555 bits (436), Expect = 1.358e-50
Identity = 134/277 (48.38%), Postives = 161/277 (58.12%), Query Frame = 0
Match: A0A5A7RA86 ((Cold shock protein 1 {ECO:0000313|EMBL:GER54643.1}))
HSP 1 Score: 172.555 bits (436), Expect = 1.358e-50
Identity = 134/277 (48.38%), Postives = 161/277 (58.12%), Query Frame = 0
Query: 1 MAEE-VPRSAGVVLRFNDQKGFGFIKPDDGGDDLFVHHSDIKSDGYRTLFPGQSVEFYVLLDDNKTKAVEVTGPNGSPLQ---QRGSGGARAGGGGFG-GARGGGGFGGARGGGGGGECYTCGRLGHMARDCDGGARGGGGRGGAGYGGARGGGERGAGGYGGARGGGAGNGVCYNCGGIGHMARDCTSARNAAGGGGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDCNTVR 272
MAEE + RS GVV +FNDQKG+GFIKPD+GG+DLFVH + IKSDGYRTL GQ VEF ++LD +KTKA +VT P G P+ +RG+ G G +G G R G G GGGGEC+TCG+ GH++RDC GG G GVCYNCGG GHMAR+C S G GGG CY+CGE GHLAR+C G GGGGG G AG Y GG G G GGG+C+ CG+ GH+A++C R
Sbjct: 1 MAEENLTRSKGVVSKFNDQKGYGFIKPDEGGEDLFVHQTAIKSDGYRTLHEGQVVEFTIILDGDKTKAADVTSPGGGPVDLTPRRGNNGNSRGRAVYGSGDRRNDGNGFGYRSGGGGECFTCGQYGHLSRDC-------------------------------TAGGAGGGGVCYNCGGYGHMARECPS-------GSRSGGGNCYSCGEAGHLARDCMGGGGGGGG-------AGGAGMGDYSHGGGGFGRFGGGGGNCFTCGKSGHFARECKEPR 232
BLAST of XM_017399703.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5A7RB26 ((Cold shock protein 1 {ECO:0000313|EMBL:GER54486.1}))
HSP 1 Score: 172.17 bits (435), Expect = 2.581e-50
Identity = 139/279 (49.82%), Postives = 164/279 (58.78%), Query Frame = 0
Match: A0A5A7RB26 ((Cold shock protein 1 {ECO:0000313|EMBL:GER54486.1}))
HSP 1 Score: 172.17 bits (435), Expect = 2.581e-50
Identity = 139/279 (49.82%), Postives = 164/279 (58.78%), Query Frame = 0
Query: 1 MAEE-VPRSAGVVLRFNDQKGFGFIKPDDGGDDLFVHHSDIKSDGYRTLFPGQSVEFYVLLDDNKTKAVEVTGPNGSPL----QQRGSGGARAGGGGFGGARG-GGGFG-GARGGGGGGECYTCGRLGHMARDCDGGARGGGGRGGAGYGGARGGGERGAGGYGGARGGGAGNGVCYNCGGIGHMARDCTSARNAAGGGGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDCNTVR 272
MAEE + RS GVV RFNDQKG+GFIKPD+GG+DLFVH + IKSDGYRTL GQ VEF ++LD +KTKA +VT P G P+ ++ S +R GG G+G R G GFG + GGGGGGEC+TCG+ GHM+RDC G GG G G G G CY CGG GHMAR+C S G GGG CYTCGE GHLAR+C G GGG G GG G G GGG+C+NCGE GH+A++C R
Sbjct: 1 MAEEKLTRSKGVVSRFNDQKGYGFIKPDEGGEDLFVHQTAIKSDGYRTLREGQVVEFTIILDGDKTKATDVTAPGGGPVDLTPRRSDSSNSRGGGYGYGDRRNDGNGFGYRSGGGGGGGECFTCGQYGHMSRDC-------------------------TSGGGGGGGRGGGGGACYTCGGYGHMARECPS-------GSRTGGGNCYTCGEAGHLARDCVSGGGGGASGGYSRG-------------GGGFGRFGGGGGNCFNCGESGHFARECKEPR 234
BLAST of XM_017399703.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q0F7D3 ((cold shock protein 1 isoform X1 {ECO:0000313|RefSeq:XP_022638513.1}) (cold shock protein 1 isoform X2 {ECO:0000313|RefSeq:XP_022638514.1}))
HSP 1 Score: 171.4 bits (433), Expect = 6.400e-50
Identity = 135/271 (49.82%), Postives = 161/271 (59.41%), Query Frame = 0
HSP 2 Score: 37.7354 bits (86), Expect = 1.534e+0
Identity = 51/128 (39.84%), Postives = 60/128 (46.88%), Query Frame = 0
Match: A0A3Q0F7D3 ((cold shock protein 1 isoform X1 {ECO:0000313|RefSeq:XP_022638513.1}) (cold shock protein 1 isoform X2 {ECO:0000313|RefSeq:XP_022638514.1}))
HSP 1 Score: 171.4 bits (433), Expect = 6.400e-50
Identity = 135/271 (49.82%), Postives = 161/271 (59.41%), Query Frame = 0
Query: 1 MAEEVPRSAGVVLRFNDQKGFGFIKPDDGGDDLFVHHSDIKSDGYRTLFPGQSVEFYVLL-DDNKTKAVEVTGPNGSPLQQRGSGGARAGGGGFGGARGGGGFGGARGGGGGGECYTCGRLGHMARDCDGGARGGGGRGGAGYGGARGG--GERGAGGYGGARGGGAGNGVCYNCGGIGHMARDCTSARNAAGGGGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDC 268
MAEE R GVV FN+ KGFGFIKPDDGG+DLFVH S I+SDGYRTL G VEF + D++KTKAV+VTG +G+PLQ R + G R G GFG R G G GGG CY CG GH+ARDC+ + GGG GG + G G G GGG G C+ CGG GHMARDC +A++ GGGGG GG C+ CGE GHLAR+C G GGG GGG G G +C+NCG+PGH+A++C
Sbjct: 1 MAEE--RFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDHVEFAIATGDNDKTKAVDVTGIDGAPLQPRAASGNRGSGYGFGSRRNGAG-------GGGAACYQCGDFGHLARDCNRSSNSGGGGGGGCFVCGGFGHLARDCVRGGNGGGGGGGNGGSCFRCGGFGHMARDCATAKSVGGGGGGGNGGGCFRCGEVGHLARDCGTEGGRYGGG------------------NSGGGGGGGGKSTCFNCGKPGHFAREC 244
HSP 2 Score: 37.7354 bits (86), Expect = 1.534e+0
Identity = 51/128 (39.84%), Postives = 60/128 (46.88%), Query Frame = 0
Query: 147 GGGERGAG-GYGGARGGGAGNGV-CYNCGGIGHMARDCTSARNAAGGGGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDCNTVR 272
G RG+G G+G R G G G CY CG GH+ARDC + N+ GGGGG G GHLAR+C R G GGG G GGSC+ CG GH A+DC T +
Sbjct: 82 ASGNRGSGYGFGSRRNGAGGGGAACYQCGDFGHLARDCNRSSNSGGGGGGGCFVC----GGFGHLARDCV-------------------------RGGNGGGGGGGNGGSCFRCGGFGHMARDCATAK 180
BLAST of XM_017399703.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q0F3B2 ((cold shock domain-containing protein 3 isoform X3 {ECO:0000313|RefSeq:XP_022638515.1}))
HSP 1 Score: 171.014 bits (432), Expect = 1.278e-49
Identity = 140/271 (51.66%), Postives = 166/271 (61.25%), Query Frame = 0
HSP 2 Score: 37.7354 bits (86), Expect = 1.606e+0
Identity = 51/128 (39.84%), Postives = 60/128 (46.88%), Query Frame = 0
HSP 3 Score: 35.4242 bits (80), Expect = 7.743e+0
Identity = 32/72 (44.44%), Postives = 37/72 (51.39%), Query Frame = 0
Match: A0A3Q0F3B2 ((cold shock domain-containing protein 3 isoform X3 {ECO:0000313|RefSeq:XP_022638515.1}))
HSP 1 Score: 171.014 bits (432), Expect = 1.278e-49
Identity = 140/271 (51.66%), Postives = 166/271 (61.25%), Query Frame = 0
Query: 1 MAEEVPRSAGVVLRFNDQKGFGFIKPDDGGDDLFVHHSDIKSDGYRTLFPGQSVEFYVLL-DDNKTKAVEVTGPNGSPLQQRGSGGARAGGGGFGGARGGGGFGGARGGGGGGECYTCGRLGHMARDCDGGARGGGGRGGAGYGGARGG--GERGAGGYGGARGGGAGNGVCYNCGGIGHMARDCTSARNAAGGGGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDC 268
MAEE R GVV FN+ KGFGFIKPDDGG+DLFVH S I+SDGYRTL G VEF + D++KTKAV+VTG +G+PLQ R + G R G GFG R G G GGG CY CG GH+ARDC+ + GGG GG + G G G GGG G C+ CGG GHMARDC +A++ GGGGG GG C+ CGE GHLAR+C G GGG GG GG Y GGG G G +C+NCG+PGH+A++C
Sbjct: 1 MAEE--RFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDHVEFAIATGDNDKTKAVDVTGIDGAPLQPRAASGNRGSGYGFGSRRNGAG-------GGGAACYQCGDFGHLARDCNRSSNSGGGGGGGCFVCGGFGHLARDCVRGGNGGGGGGGNGGSCFRCGGFGHMARDCATAKSVGGGGGGGNGGGCFRCGEVGHLARDCGTEGGRYGGGNS----GGGGGGGRYGGGNSGGGGGGGGKSTCFNCGKPGHFAREC 258
HSP 2 Score: 37.7354 bits (86), Expect = 1.606e+0
Identity = 51/128 (39.84%), Postives = 60/128 (46.88%), Query Frame = 0
Query: 147 GGGERGAG-GYGGARGGGAGNGV-CYNCGGIGHMARDCTSARNAAGGGGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDCNTVR 272
G RG+G G+G R G G G CY CG GH+ARDC + N+ GGGGG G GHLAR+C R G GGG G GGSC+ CG GH A+DC T +
Sbjct: 82 ASGNRGSGYGFGSRRNGAGGGGAACYQCGDFGHLARDCNRSSNSGGGGGGGCFVC----GGFGHLARDCV-------------------------RGGNGGGGGGGNGGSCFRCGGFGHMARDCATAK 180
HSP 3 Score: 35.4242 bits (80), Expect = 7.743e+0
Identity = 32/72 (44.44%), Postives = 37/72 (51.39%), Query Frame = 0
Query: 114 CYTCGRLGHMARDCDGGARGGGGRGGAGYGGARGGGERGAGGYGGARGGGAGNGVCYNCGGIGHMARDCTSA 185
C+ CG +GH+ARDC GG G GG G GG G GGG G C+NCG GH AR+C A
Sbjct: 194 CFRCGEVGHLARDCGTEGGRYGGGNSGGGGGGGRYG----GGNSGGGGGGGGKSTCFNCGKPGHFARECVEA 261
BLAST of XM_017399703.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D5H5 ((Uncharacterized protein {ECO:0000313|EMBL:THF97093.1}))
HSP 1 Score: 170.244 bits (430), Expect = 1.560e-49
Identity = 133/279 (47.67%), Postives = 154/279 (55.20%), Query Frame = 0
HSP 2 Score: 49.2914 bits (116), Expect = 1.975e-4
Identity = 32/70 (45.71%), Postives = 34/70 (48.57%), Query Frame = 0
Match: A0A4S4D5H5 ((Uncharacterized protein {ECO:0000313|EMBL:THF97093.1}))
HSP 1 Score: 170.244 bits (430), Expect = 1.560e-49
Identity = 133/279 (47.67%), Postives = 154/279 (55.20%), Query Frame = 0
Query: 1 MAEEVPRSAGVVLRFNDQKGFGFIKPDDGGDDLFVHHSDIKSDGYRTLFPGQSVEFYVLLDDNKTKAVEVTGPNGSPLQQRGSGGARAGGGGFGGARGGGGFGGARGGGGGGE-----------CYTCGRLGHMARDCDGGARGGGGRGGAGYGGARGGGERGAGGYGGARGGGAGNGVCYNCGGIGHMARDCTSARNAAGGGGGIGGGACYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDC 268
MAEE PRS G V FNDQKGFGFI+PDD G+DLFVH S I SDG+RTL GQ+VEF + L++++TKA++VTGPNGS L++ R G R GGG+G G G G CY CG GH+ARDC R G+ GG GVCYNCG GH+ARDC GG G GGG+CY CG GHLARECP G GG GY RFG GGG G GG +CYNCGE GH+AK+C
Sbjct: 1 MAEENPRSRGTVRWFNDQKGFGFIRPDDEGEDLFVHQSAIISDGFRTLQEGQAVEFLIALENDRTKAIQVTGPNGSSLEKIRRDDFRGDRTDAYGVRSGGGYGFNGGWRGSGRDGGGNAYRGGGCYNCGEDGHLARDC--------PRQGSSAGGG---------------------GVCYNCGEFGHLARDCNRG-RGGGGATGGGGGSCYNCGGQGHLARECPSGGSGGRSRGGYGRFGSGG-----------GGGGGGGGSNCYNCGEQGHFAKEC 238
HSP 2 Score: 49.2914 bits (116), Expect = 1.975e-4
Identity = 32/70 (45.71%), Postives = 34/70 (48.57%), Query Frame = 0
Query: 200 CYTCGEHGHLARECPVGAGGGGGGRGYDRFGGSAGGRGYDRFGGNGGGAGRGGGSCYNCGEPGHYAKDCN 269
CY CGE GHLAR+CP R G SAGG GG CYNCGE GH A+DCN
Sbjct: 125 CYNCGEDGHLARDCP-------------RQGSSAGG----------------GGVCYNCGEFGHLARDCN 165
| Match Name | Stats | Description |
|---|---|---|
| M0ZVR3 | E-Value: 3.619e-53, PID: 50.54 | (Cellular nucleic acid binding protein {ECO:000031... [more] |
| A0A0V0HRB1 | E-Value: 3.570e-52, PID: 50.54 | (Putative cold shock domain-containing protein 3-l... [more] |
| A0A6N2BQG4 | E-Value: 4.486e-52, PID: 47.56 | (Uncharacterized protein {ECO:0000313|EMBL:TMW9702... [more] |
| A0A314KQ85 | E-Value: 7.848e-52, PID: 49.82 | (Cold shock protein 1 {ECO:0000313|EMBL:OIT31327.1... [more] |
| A0A4D6KZC2 | E-Value: 9.016e-51, PID: 50.55 | (Cellular nucleic acid-binding protein {ECO:000031... [more] |
| A0A5A7RA86 | E-Value: 1.358e-50, PID: 48.38 | (Cold shock protein 1 {ECO:0000313|EMBL:GER54643.1... [more] |
| A0A5A7RB26 | E-Value: 2.581e-50, PID: 49.82 | (Cold shock protein 1 {ECO:0000313|EMBL:GER54486.1... [more] |
| A0A3Q0F7D3 | E-Value: 6.400e-50, PID: 49.82 | (cold shock protein 1 isoform X1 {ECO:0000313|RefS... [more] |
| A0A3Q0F3B2 | E-Value: 1.278e-49, PID: 51.66 | (cold shock domain-containing protein 3 isoform X3... [more] |
| A0A4S4D5H5 | E-Value: 1.560e-49, PID: 47.67 | (Uncharacterized protein {ECO:0000313|EMBL:THF9709... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |