Resource Type:
Polypeptide
Name:
XM_017359471.1
Identifier:
XM_017359471.1-protein
Sequence:
MTSTESVSEDSFLHNYNANDRRIASEFLSGWLPFLTKGLCDSCNRKLTHR
VRSLCPGDDSDKKSVGSLKDGVIDAAETNSLGSWKDGENGCAEPAVESDL
GANVCAASDMIASSVPAGSGERRTSWADMAQEDELEGDEESEVTSTSRLS
VANSASGDGTAEEKSVSKPGLSRDQREYIRFTNVKRKKDFACIERVNQKL
VNILDGLELHTGVFSAAEQKRIVDYVYELEEMGKNGKLKARTYTAPQKWM
RGKGRVTIQFGCCYNYAVDKKGNPPGILQNELVDPIPHLFKVIIRRLIRW
HVLPTTCVPDSCIVNIYDKDDCIPPHIDNHDFLRPFCTVSFLSECDIVFG
SNLKIIGPGDFAGSTAISLPVGSVLVLNGNGADVAKHCVPAVPTKRISIT
FRKMDETKWPVGYTPEPDLQGLQPLSYEADRSKHSNISKINHAGNLKAAR
SVDNSDRLKERGFFGPGPRRGRVNRQRLRLDMMEG
Sequence Length:
485
Sequence Checksum:
1ba8f4f1bec5103b45be390e5fd942ef
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017359471.1, derives from mRNA, XM_017359471.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017359471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017359471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C133 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471} (Fragment))
HSP 1 Score: 598.201 bits (1541), Expect = 0.000e+0
Identity = 321/530 (60.57%), Postives = 368/530 (69.43%), Query Frame = 0
Match: A0A5B7C133 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471} (Fragment))
HSP 1 Score: 598.201 bits (1541), Expect = 0.000e+0
Identity = 321/530 (60.57%), Postives = 368/530 (69.43%), Query Frame = 0
Query: 1 MTSTESVSEDSFLHNYNANDRRIASEFLSGWLPFLTKGLCDSCNRKLTHRVRSLCP-------------------------------GDDSDKKSVGSLKDG--VIDAAETNSLGSWKDGENGCAEPAVESDLGANVCAASDMIASSVPAGSGERRTSWADMAQEDELEGDEESEVTSTSRLSVANSASGDGTAEEKSVSKPGLSRDQREYIRFTNVKRKKDFACIERVNQKLVNILDGLELHTGVFSAAEQKRIVDYVYELEEMGKNGKLKARTYTAPQKWMRGKGRVTIQFGCCYNYAVDKKGNPPGILQNELVDPIPHLFKVIIRRLIRWHVLPTTCVPDSCIVNIYDKDDCIPPHIDNHDFLRPFCTVSFLSECDIVFGSNLKIIGPGDFAGSTAISLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMDETKWPVGYTPEPDLQGLQPLSYEADRSKHSNISKINHAGNLKAARSVDNSDRLK---ERG-------------FFGPGPRRGRVNRQRLRLD 481
M + ++D FL +Y+ D RIASEFL+ WLPFL++ LC C R L+ R+RSL P D+ D S+GS KDG V D + NSLGSWKDG NG +EP E+ + S S VP S R SWADMAQEDELE +EE EV R ++ SG+ T K KP L R+QRE+IRF+NVKRKKDF C+ERV K+VNIL+GLELHTGVFSA EQKRIVD+VY L+EMGK G+LK RTYTAPQKWMRGKGRVTIQFGCCYNY DK NPPGILQNELVDPIP LFKVIIRRL+RWHV+P +CVPDSCIVNIY++ DCIPPHIDNHDF+RPFCTVSFLSECDIVFGSNLK++G G+F+G+ AI LPVGS+LVLNGNGADVAKHCVPAVPTKRISITFRKMDE+KWPVG+ PEPDLQGLQPL YE DRSK N SK N +A R DN D+ + ERG GPG RR R R+ LD
Sbjct: 30 MNDRRTRTDDPFLLSYSDTDLRIASEFLATWLPFLSRDLCHHCTRTLSDRIRSLDPEVDGDVKPLDQEENLTVSTPNNIDLNDANENEDNCDTNSLGSWKDGADVNDITDMNSLGSWKDGGNGWSEPIAEA-------STSGTSGSPVPTESSRVRMSWADMAQEDELEAEEEDEV--NRRPVDGHATSGEATMAVKGRPKPELPREQREHIRFSNVKRKKDFICLERVKGKIVNILEGLELHTGVFSAVEQKRIVDFVYTLQEMGKKGELKERTYTAPQKWMRGKGRVTIQFGCCYNYVKDKNDNPPGILQNELVDPIPPLFKVIIRRLVRWHVIPPSCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECDIVFGSNLKVVGAGEFSGAFAIPLPVGSILVLNGNGADVAKHCVPAVPTKRISITFRKMDESKWPVGFVPEPDLQGLQPLPYEEDRSKRMNPSKSKRPVNRQAVRREDNRDKARGSAERGNAHLELHHHSIQVQVGPGNRR----RVRINLD 546
BLAST of XM_017359471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0F5I0 ((2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein {ECO:0000313|EMBL:GFY93962.1}))
HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 316/494 (63.97%), Postives = 365/494 (73.89%), Query Frame = 0
Match: A0A7J0F5I0 ((2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein {ECO:0000313|EMBL:GFY93962.1}))
HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 316/494 (63.97%), Postives = 365/494 (73.89%), Query Frame = 0
Query: 8 SEDSFLHNYNANDRRIASEFLSGWLPFLTKGLCDSCNRKLTHRVRS--------------------LCPG-----------DDSDKKSVGSLKDGV--IDAAETNSLGSWKDGENGCAEPAVESDLGANVCAASDMIASSVPA-GSGERRTSWADMAQEDELEGDEESEVTSTSRLSVANSASGDGTAEEKSVSKPGLSRDQREYIRFTNVKRKKDFACIERVNQKLVNILDGLELHTGVFSAAEQKRIVDYVYELEEMGKNGKLKARTYTAPQKWMRGKGRVTIQFGCCYNYAVDKKGNPPGILQNELVDPIPHLFKVIIRRLIRWHVLPTTCVPDSCIVNIYDKDDCIPPHIDNHDFLRPFCTVSFLSECDIVFGSNLKIIGPGDFAGSTAISLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMDETKWPVGYTPEPDLQGLQPLSYEADRSKHSNISKINHAGNLKAARSVDNSDRLKERGFFGPG 467
++D FL NYNA D RIASEFLS WLPFL++ LC C + LT R+RS L P DD D S+GS KD V D +T+SLG K NG +EP ++ + S+ + SSV A S + R SWADMAQEDELE +EE+E ++ S N+ SGDG K LSRDQREYIRF+NVKRKKDF C+ERVN K+VNILDGLELHTGVFSA EQKRI+ +VYEL+E GK G+LK RTYTAPQKWMRGKGRVTIQFGCCYNYA D+ GNPPGILQNELVDPIPHLFKVII+RL+RWHVLP +CVPDSCIVN+YD+ DCIPPHIDNHDF+RPFCTVSFLSEC+IVFGSNLK+ G G+F+GSTAISLPVGSVLVLNGNGADV+KHCVPAVPTKRISITFRKMDE+K P+G+ PEPDLQGLQPLSYE +RSK S SK + N ++ R+ DN DR+ RG G G
Sbjct: 9 TDDPFLVNYNATDLRIASEFLSNWLPFLSRDLCPHCKQNLTDRIRSLKTEVDGDLEASKQEENFAVLTPDDIDSNEINENEDDYDTNSLGSWKDAVDINDTEDTSSLGMLKGQTNGWSEPISDA-------STSEALGSSVVAVASPKVRMSWADMAQEDELEEEEENEGSAQS--VDGNTQSGDGIGAVSVRKKTELSRDQREYIRFSNVKRKKDFICLERVNGKIVNILDGLELHTGVFSAVEQKRIIGFVYELQEKGKKGELKERTYTAPQKWMRGKGRVTIQFGCCYNYATDRNGNPPGILQNELVDPIPHLFKVIIKRLVRWHVLPPSCVPDSCIVNVYDEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVEGAGEFSGSTAISLPVGSVLVLNGNGADVSKHCVPAVPTKRISITFRKMDESKRPIGFLPEPDLQGLQPLSYETERSKRSTPSKSKLSANRQSFRNEDNRDRI--RGSAGRG 491
BLAST of XM_017359471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z2X6 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 592.038 bits (1525), Expect = 0.000e+0
Identity = 311/519 (59.92%), Postives = 370/519 (71.29%), Query Frame = 0
Match: A0A5B6Z2X6 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 592.038 bits (1525), Expect = 0.000e+0
Identity = 311/519 (59.92%), Postives = 370/519 (71.29%), Query Frame = 0
Query: 8 SEDSFLHNYNANDRRIASEFLSGWLPFLTKGLCDSCNRKLTHRVRSLCPGDDSDKK-------------------------------SVGSLKDGV--IDAAETNSLGSWKDGENGCAEPAVESDLGANVCAASDMIASSVPAGSGERRTSWADMAQ-EDELEGDEESEVTSTSRLSV-ANSASGDGTAEEKSVSKPGLSRDQREYIRFTNVKRKKDFACIERVNQKLVNILDGLELHTGVFSAAEQKRIVDYVYELEEMGKNGKLKARTYTAPQKWMRGKGRVTIQFGCCYNYAVDKKGNPPGILQNELVDPIPHLFKVIIRRLIRWHVLPTTCVPDSCIVNIYDKDDCIPPHIDNHDFLRPFCTVSFLSECDIVFGSNLKIIGPGDFAGSTAISLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMDETKWPVGYTPEPDLQGLQPLSYEADRSKHSNISKINHAGNLKAARSVDNSDRLK---ERGFFGPGP------RRGRVNRQRLRLDM 482
S+D FL NYNA D RIASEFL+ WLPF+++ LC +C + ++ R+RS+ P D D K S+GS KDG D A+TN LGS KDG NGC++P E+ + S S VP + + R SWADMAQ ++ +EE E +R V ++ SG+ T K KP L R+QREYIRF+NV RKKDF C+ERV K VN+LDGLELHTGVFSA EQKRIVD+VYEL+E GK G+LK RTYTAPQKWMRGKGRVTIQFGCCYNYA+DK GNPPGILQNE+VDPIPHLFKVIIRRL++WHVLP +CVPDSCIVNIY++ DCIPPHIDNHDF+RPFCTVSFLSEC+IVFG+NLK++ G+F+GS AI LPVGSVLVLNGNGADVAKHCVPAVP KRISITFRKMDE+K PVG+ PEPDLQGLQPLSY+ D+SK N SK H N +A R DN D + ERG P +RG NR+R+R+++
Sbjct: 8 SDDPFLLNYNATDLRIASEFLANWLPFISRDLCHNCTQTISDRIRSIGPEVDGDVKPLNQEENLTVSTSNNMDLNEFNENQENCDTNSLGSWKDGADWNDTADTNLLGSLKDGANGCSDPIAEA-------STSRTEGSPVPIDTPKVRLSWADMAQEDELEAEEEEEEENEVNRQPVDGDATSGEATVAVKGQPKPELPREQREYIRFSNVNRKKDFICLERVKGKFVNVLDGLELHTGVFSAVEQKRIVDFVYELQEKGKKGELKERTYTAPQKWMRGKGRVTIQFGCCYNYAIDKNGNPPGILQNEIVDPIPHLFKVIIRRLVKWHVLPPSCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGTNLKVVDAGEFSGSFAIPLPVGSVLVLNGNGADVAKHCVPAVPMKRISITFRKMDESKCPVGFVPEPDLQGLQPLSYK-DKSKRLNPSKSRHLVNRQAVRREDNRDEGRGSAERGNTHLEPYHSIQIQRGPGNRRRVRVNL 518
BLAST of XM_017359471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R5S4 ((RNA demethylase {ECO:0000313|EMBL:PSS21354.1}))
HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0
Identity = 314/494 (63.56%), Postives = 366/494 (74.09%), Query Frame = 0
Match: A0A2R6R5S4 ((RNA demethylase {ECO:0000313|EMBL:PSS21354.1}))
HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0
Identity = 314/494 (63.56%), Postives = 366/494 (74.09%), Query Frame = 0
Query: 8 SEDSFLHNYNANDRRIASEFLSGWLPFLTKGLCDSCNRKLTHRVRS--------------------LCPG-----------DDSDKKSVGSLKDGV--IDAAETNSLGSWKDGENGCAEPAVESDLGANVCAASDMIASSVPA-GSGERRTSWADMAQEDELEGDEESEVTSTSRLSVANSASGDGTAEEKSVSKPGLSRDQREYIRFTNVKRKKDFACIERVNQKLVNILDGLELHTGVFSAAEQKRIVDYVYELEEMGKNGKLKARTYTAPQKWMRGKGRVTIQFGCCYNYAVDKKGNPPGILQNELVDPIPHLFKVIIRRLIRWHVLPTTCVPDSCIVNIYDKDDCIPPHIDNHDFLRPFCTVSFLSECDIVFGSNLKIIGPGDFAGSTAISLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMDETKWPVGYTPEPDLQGLQPLSYEADRSKHSNISKINHAGNLKAARSVDNSDRLKERGFFGPG 467
++D FL NYNA D RIASEFLS WLPFL++ LC +C + LT R+RS L P DD D S+GS KD V D +T+SLG K NG ++P ++ + S+ + SSV A S + R SWADMAQEDELE +E++E ++ S N+ SGDG K LSRDQREYIRF+NVKRKKDF C+ERVN K+VNILDGLELHTGVFSA EQKRI+ +VYEL+E GK G+LK RTYTAPQKWMRGKGRVTIQFGCCYNYA D+ GNPPGILQNELVDPIPHLFKVII+RL+RWHVLP +CVPDSCIVN+YD+ DCIPPHIDNHDF+RPFCTVSFLSEC+IVFGSNLK+ G G+F+GSTAISLPVGSVLVLNGNGADV+KHCVPAVPTKRISITFRKMDE+K P+G+ PEPDLQGLQPLSYE +RSK S SK + N ++ R+ DN DR+ RG G G
Sbjct: 9 TDDPFLVNYNATDLRIASEFLSNWLPFLSRDLCPNCKQTLTDRIRSLKSEVDGDLDAIKQEENFAVLTPDDIDSNEINENEDDYDTNSLGSWKDAVDINDTEDTSSLGMLKGQTNGWSDPISDA-------STSEALGSSVVAVASPKVRMSWADMAQEDELEEEEQNEGSAQS--IDRNTRSGDGIGAVSVRQKTELSRDQREYIRFSNVKRKKDFICLERVNGKIVNILDGLELHTGVFSAVEQKRIIGFVYELQEKGKKGELKERTYTAPQKWMRGKGRVTIQFGCCYNYATDRNGNPPGILQNELVDPIPHLFKVIIKRLVRWHVLPPSCVPDSCIVNVYDEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVEGAGEFSGSTAISLPVGSVLVLNGNGADVSKHCVPAVPTKRISITFRKMDESKRPIGFLPEPDLQGLQPLSYETERSKRSAPSKSKLSANRQSFRNEDNRDRI--RGSAGRG 491
BLAST of XM_017359471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z3A8 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471} (Fragment))
HSP 1 Score: 589.341 bits (1518), Expect = 0.000e+0
Identity = 317/524 (60.50%), Postives = 370/524 (70.61%), Query Frame = 0
Match: A0A5B6Z3A8 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471} (Fragment))
HSP 1 Score: 589.341 bits (1518), Expect = 0.000e+0
Identity = 317/524 (60.50%), Postives = 370/524 (70.61%), Query Frame = 0
Query: 1 MTSTESVSEDSFLHNYNANDRRIASEFLSGWLPFLTKGLCDSCNRKLTHRVRSLCP-------------------------------GDDSDKKSVGSLKDG--VIDAAETNSLGSWKDGENGCAEPAVESDLGANVCAASDMIASSVPAGSGERRTSWADMAQEDELEGDEESEVTSTSRLSVANSASGDGTAEEKSVSKPGLSRDQREYIRFTNVKRKKDFACIERVNQKLVNILDGLELHTGVFSAAEQKRIVDYVYELEEMGKNGKLKARTYTAPQKWMRGKGRVTIQFGCCYNYAVDKKGNPPGILQNELVDPIPHLFKVIIRRLIRWHVLPTTCVPDSCIVNIYDKDDCIPPHIDNHDFLRPFCTVSFLSECDIVFGSNLKIIGPGDFAGSTAISLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMDETKWPVGYTPEPDLQGLQPLSYEADRSKHSNISKINHAGNLKAARSVDNSDRLK---ERGFFGPGP------RRGRVNRQRLRLDM 482
M + ++D FL +Y+ D RIASEFL+ WLPFL++ LC C R L+ R+RSL P D+ D S+GS KDG V D + NSLGSWKDG NG +EP E+ + S S VP S R SWADMAQEDELE +EE EV R ++ SG+ T K KP L R+QRE+IRF+NVKRKKDF C+ERV K+VNIL+GLELHTGVFSA EQKRIVD+VY L+EMGK G+LK RTYTAPQKWMRGKGRVTIQFGCCYNY DK NPPGILQNELVDPIP LFKVIIRRL+RWHV+P +CVPDSCIVNIY++ DCIPPHIDNHDF+RPFCTVSFLSECDIVFGSNLK++G G+F+G+ AI LPVGS+LVLNGNGADVAKHCVPAVP KRISITFRKMDE+K PVG+ PEPDLQGLQPLSY+ D+SK N SK H N +A R DN D + ERG P +RG NR+R+R+++
Sbjct: 33 MNDRRTRTDDPFLLSYSDTDLRIASEFLATWLPFLSRDLCHHCTRTLSDRIRSLDPEVDGDVKPLDQEENLTVSTPNNIDLNDANENEDNCDTNSLGSWKDGADVNDITDMNSLGSWKDGGNGWSEPIAEA-------STSGTSGSPVPTESSRVRMSWADMAQEDELEAEEEDEV--NRRPVDGHATSGEATMAVKGRPKPELPREQREHIRFSNVKRKKDFICLERVKGKIVNILEGLELHTGVFSAVEQKRIVDFVYTLQEMGKKGELKERTYTAPQKWMRGKGRVTIQFGCCYNYVKDKNDNPPGILQNELVDPIPPLFKVIIRRLVRWHVIPPSCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECDIVFGSNLKVVGAGEFSGAFAIPLPVGSILVLNGNGADVAKHCVPAVPMKRISITFRKMDESKCPVGFVPEPDLQGLQPLSYK-DKSKRLNPSKSRHLVNRQAVRREDNRDEGRGSAERGNTHLEPYHSIQIQRGPGNRRRVRVNL 546
BLAST of XM_017359471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I2I5 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0
Identity = 312/520 (60.00%), Postives = 370/520 (71.15%), Query Frame = 0
Match: A0A7J7I2I5 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0
Identity = 312/520 (60.00%), Postives = 370/520 (71.15%), Query Frame = 0
Query: 8 SEDSFLHNYNANDRRIASEFLSGWLPFLTKGLCDSCNRKLTHRVRSLCPGDDSD-------------------------------KKSVGSLKDG--VIDAAETNSLGSWKDGENGCAEPAVESDLGANVCAASDMIASS-VPAGSGERRTSWADMAQEDELEGDEESEVTSTSRLSVANSASGDGTAEEKSVSKPGLSRDQREYIRFTNVKRKKDFACIERVNQKLVNILDGLELHTGVFSAAEQKRIVDYVYELEEMGKNGKLKARTYTAPQKWMRGKGRVTIQFGCCYNYAVDKKGNPPGILQNELVDPIPHLFKVIIRRLIRWHVLPTTCVPDSCIVNIYDKDDCIPPHIDNHDFLRPFCTVSFLSECDIVFGSNLKIIGPGDFAGSTAISLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMDETKWPVGYTPEPDLQGLQPLSYEADRSKHSNISKINHAGNLKAARSVDNSDRLKERGFFGPGP-----------RRGRVNRQRLRLDM 482
++D FL YNA D RIASEFLS WLPFL+ LC C + L+ R+RSL P D D S+GS KD + D A+TNSLGSWKD +G ++PA E+ ++S+ + S+ V +GS R SWADMAQEDELE +EE + ++ + G+ T K KP LSR+QREYIRF+NVKRKKDF C+ER K+VNIL+GLELHTGVFSAAEQKRIVD+VY L+E GK G+LK RTYTAPQKWMRGKGRVTIQFGCCYNYA DK GNPPGIL NE VDPIPHLFKVIIRRL+ WHVLP +CVPDSCIVNIY++ DCIPPHIDNHDF+RPFCTVSFLSEC+I+FGSNLKI+G G+F+GS AI LPVGSVLVLNGNGADV+KHCVPAVPTKRISITFRKMDE+KWP+G+ PEPDLQGLQPLSYE +RSK K + + + AR DN +R K RG G G +RG NR+R+ +++
Sbjct: 9 TDDPFLVKYNATDLRIASEFLSNWLPFLSTDLCLQCTQTLSDRIRSLAPEIDGDVEPIKQEENSAVLTSKDMDLNEIDENHDNCNPNSLGSWKDAADLNDTADTNSLGSWKDEASGWSDPAAEA-------SSSETVGSAVVTSGSPRVRMSWADMAQEDELEEEEEENEVNGQSVN-RYAQLGEATVAVKVQQKPELSREQREYIRFSNVKRKKDFICLERFKGKIVNILEGLELHTGVFSAAEQKRIVDFVYSLQERGKKGELKERTYTAPQKWMRGKGRVTIQFGCCYNYAPDKNGNPPGILPNENVDPIPHLFKVIIRRLVTWHVLPPSCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNILFGSNLKIVGAGEFSGSIAIPLPVGSVLVLNGNGADVSKHCVPAVPTKRISITFRKMDESKWPIGFVPEPDLQGLQPLSYETNRSKRQTPLKPKLSMSRQVARREDN-NRDKARGSAGRGNYHVEPQVSLQIQRGPSNRRRVSVNL 519
BLAST of XM_017359471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6INP0 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 309/529 (58.41%), Postives = 371/529 (70.13%), Query Frame = 0
Match: A0A1J6INP0 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 309/529 (58.41%), Postives = 371/529 (70.13%), Query Frame = 0
Query: 9 EDSFLHNYNANDRRIASEFLSGWLPFLTKGLCDSCNRKLTHRVRSL-----------------------------CPG--DDSDKKSVGSLKD--GVIDAAETNSLGSWKDGENG---CAEPAVE---SDL---GANVCA-------ASDMIASSVPAGSGERRTSWADMAQEDELEGDEESEVTSTSRLSVANSASGDGTAEEKSVSKPGLSRDQREYIRFTNVKRKKDFACIERVNQKLVNILDGLELHTGVFSAAEQKRIVDYVYELEEMGKNGKLKARTYTAPQKWMRGKGRVTIQFGCCYNYAVDKKGNPPGILQNELVDPIPHLFKVIIRRLIRWHVLPTTCVPDSCIVNIYDKDDCIPPHIDNHDFLRPFCTVSFLSECDIVFGSNLKIIGPGDFAGSTAISLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMDETKWPVGYTPEPDLQGLQPLSYEADRSKHSNISKINHAGNLKAARSVDNSDRLK-------ERGFFGPGPRRGRVNRQRLRLD 481
+D FL NYN + RIASEFLS WLPFL++ LC SC L+ R+RSL C G ++ D S+GS D + D A+TNSLGSWKDG G EP+V+ SD GA+ + S+ +SS+P + + + SWADMAQEDEL+ ++ SE + S S N S + +S K LSR+QREYIRF NVKRKKDF C+ERVN K VNILDGLELH GVFSAAEQ RIV YV +L++MGKNG+LK RTYTAP KWMRGKGRVTIQFGCCYNYA DK GNPPGIL++E VDP+P L KV+IRRL++WHV+P TCVPDSCI+NIY++ DCIPPHIDNHDF+RPFCTVSFLSEC+IVFGSNLKI+GPG+FAG+ AI LPVGSVLVLNGNGADVAKHCVPAVPTKRISITFR+MDE+K PVGY PE DLQGLQPLSYE DR K SN SK ++ ++A ++ +R+K E + G R+G NRQR ++
Sbjct: 12 DDPFLLNYNPEELRIASEFLSNWLPFLSRDLCHSCTNTLSDRIRSLNFKVGGDAECLKQPKNISVLTPERCDSDGCNGSQENCDNNSLGSWNDCGDLNDNADTNSLGSWKDGAGGGEPFEEPSVDRHSSDSCIDGADSVSRPVGEATTSEAFSSSIPVTTPKMKMSWADMAQEDELQAEQVSESIALS--SQVNGVSEEEITTPESKPKTELSREQREYIRFCNVKRKKDFICLERVNGKFVNILDGLELHKGVFSAAEQIRIVKYVEKLDQMGKNGELKERTYTAPPKWMRGKGRVTIQFGCCYNYAPDKSGNPPGILKSETVDPLPDLLKVMIRRLVKWHVMPPTCVPDSCIINIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKIVGPGEFAGAIAIPLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRRMDESKRPVGYVPEQDLQGLQPLSYETDRQKKSNSSKPRYSARKQSALREESMERVKMPMRRHSEPRYTGRY-RQGPANRQRFSVN 537
BLAST of XM_017359471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068U154 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0
Identity = 312/505 (61.78%), Postives = 367/505 (72.67%), Query Frame = 0
Match: A0A068U154 (Fe2OG dioxygenase domain-containing protein {ECO:0000259|PROSITE:PS51471})
HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0
Identity = 312/505 (61.78%), Postives = 367/505 (72.67%), Query Frame = 0
Query: 9 EDSFLHNYNANDRRIASEFLSGWLPFLTKGLCDSCNRKLTHRVRSLCPG--------------------DDSDKKSVGSLKDGV--IDAAETNSLGSWKDGENGCAEPAVESDLGANVCAASDMIASSVPA--GSGERRTSWADMAQEDELEGDEESEVTSTSRLSVANSASGDGTAEEKSVSKPGLSRDQREYIRFTNVKRKKDFACIERVNQKLVNILDGLELHTGVFSAAEQKRIVDYVYELEEMGKNGKLKARTYTAPQKWMRGKGRVTIQFGCCYNYAVDKKGNPPGILQNELVDPIPHLFKVIIRRLIRWHVLPTTCVPDSCIVNIYDKDDCIPPHIDNHDFLRPFCTVSFLSECDIVFGSNLKIIGPGDFAGSTAISLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMDETKWPVGYTPEPDLQGLQPLSYEADRSKHSNISKINHAG-NLKAARSVDNSDRLKERGFFGPGP--------RRGRVNRQRLRL 480
+D FL YNA+D RIASEFLS WLPFL++GLC C + L+ VRSL PG ++ D S+G+ KD V + A+TNSLGSWKDG +G +EP E + A+ S SS PA + + SWADMAQEDELE +EE+EVTS ++ AN + + ++ K LSR+QREYIRFTNVKRKKDF C+ERV K VNILDGLELHTGVFSAAEQKRIVDYV L+EMGK G+LKART+TAPQKWMRGKGRVT+QFGCCYNYAVDK GNPPGIL+NE+VDP+P LFKV+I+RLIRWHVLP +CVPDSCIVNIYD+ DCIPPHIDNHDF+RPFCTVSFLSEC IVFGS+LKIIGPG+F+GS AI LPVGSV VLNGNGAD+AKHCVPAVP+KRISITFRKMDE K P+GY PEPDLQGLQPL+Y DR K K G L R + + + +G G R+G VNR+ ++L
Sbjct: 17 DDPFLLKYNADDLRIASEFLSNWLPFLSRGLCRRCTQTLSDLVRSLDPGAEENPVVFTLKNMDISGCDKNNCDTTSLGNWKDDVDVTEIADTNSLGSWKDGVDGSSEPVAEMESEASTIETS----SSYPALFEAPREKMSWADMAQEDELEAEEENEVTS-RQVGHANGVAEENLTVQEVKQKTQLSREQREYIRFTNVKRKKDFMCLERVKGKPVNILDGLELHTGVFSAAEQKRIVDYVEVLQEMGKKGELKARTFTAPQKWMRGKGRVTMQFGCCYNYAVDKNGNPPGILKNEVVDPLPDLFKVMIKRLIRWHVLPPSCVPDSCIVNIYDEGDCIPPHIDNHDFVRPFCTVSFLSECSIVFGSDLKIIGPGEFSGSAAIPLPVGSVFVLNGNGADIAKHCVPAVPSKRISITFRKMDELKRPIGYVPEPDLQGLQPLTYGVDRPKKLTSPKPRGFGKKLVVRRDEGDENSSEAKGSIERGSNARQSNRTRQGFVNRRNVKL 516
BLAST of XM_017359471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TL58 ((RNA demethylase ALKBH9B-like {ECO:0000313|RefSeq:XP_027076229.1, ECO:0000313|RefSeq:XP_027079253.1}))
HSP 1 Score: 582.022 bits (1499), Expect = 0.000e+0
Identity = 312/505 (61.78%), Postives = 367/505 (72.67%), Query Frame = 0
Match: A0A6P6TL58 ((RNA demethylase ALKBH9B-like {ECO:0000313|RefSeq:XP_027076229.1, ECO:0000313|RefSeq:XP_027079253.1}))
HSP 1 Score: 582.022 bits (1499), Expect = 0.000e+0
Identity = 312/505 (61.78%), Postives = 367/505 (72.67%), Query Frame = 0
Query: 9 EDSFLHNYNANDRRIASEFLSGWLPFLTKGLCDSCNRKLTHRVRSLCPG--------------------DDSDKKSVGSLKDGV--IDAAETNSLGSWKDGENGCAEPAVESDLGANVCAASDMIASSVPA--GSGERRTSWADMAQEDELEGDEESEVTSTSRLSVANSASGDGTAEEKSVSKPGLSRDQREYIRFTNVKRKKDFACIERVNQKLVNILDGLELHTGVFSAAEQKRIVDYVYELEEMGKNGKLKARTYTAPQKWMRGKGRVTIQFGCCYNYAVDKKGNPPGILQNELVDPIPHLFKVIIRRLIRWHVLPTTCVPDSCIVNIYDKDDCIPPHIDNHDFLRPFCTVSFLSECDIVFGSNLKIIGPGDFAGSTAISLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMDETKWPVGYTPEPDLQGLQPLSYEADRSKHSNISKINHAG-NLKAARSVDNSDRLKERGFFGPGP--------RRGRVNRQRLRL 480
+D FL YNA+D RIASEFLS WLPFL++GLC C + L+ VRSL PG ++ D S+G+ KD V + A+TNSLGSWKDG +G +EP E + A+ S SS PA + + SWADMAQEDELE +EE+EVTS ++ AN + + ++ K LSR+QREYIRFTNVKRKKDF C+ERV K VNILDGLELHTGVFSAAEQKRIVDYV L+EMGK G+LKART+TAPQKWMRGKGRVT+QFGCCYNYAVDK GNPPGIL+NE+VDP+P LFKV+I+RLIRWHVLP +CVPDSCIVNIYD+ DCIPPHIDNHDF+RPFCTVSFLSEC IVFGS+LKIIGPG+F+GS AI LPVGSV VLNGNGAD+AKHCVPAVP+KRISITFRKMDE K P+GY PEPDLQGLQPL+Y DR K K G L R + + + +G G R+G VNR+ ++L
Sbjct: 17 DDPFLLKYNADDLRIASEFLSNWLPFLSRGLCRRCTQTLSDLVRSLDPGAEENPVVLTLKNMDISGCDKNNCDTTSLGNWKDDVDVNEIADTNSLGSWKDGVDGSSEPVAEMESEASTIETS----SSYPALFEAPREKMSWADMAQEDELEAEEENEVTS-RQVGHANGVAEENLTVQEVKQKTQLSREQREYIRFTNVKRKKDFMCLERVKGKPVNILDGLELHTGVFSAAEQKRIVDYVEVLQEMGKKGELKARTFTAPQKWMRGKGRVTMQFGCCYNYAVDKNGNPPGILKNEVVDPLPDLFKVMIKRLIRWHVLPPSCVPDSCIVNIYDEGDCIPPHIDNHDFVRPFCTVSFLSECSIVFGSDLKIIGPGEFSGSAAIPLPVGSVFVLNGNGADIAKHCVPAVPSKRISITFRKMDELKRPIGYVPEPDLQGLQPLTYGVDRPKKLTSPKPRGFGKKLVVRRDEGDENSSEAKGSIERGSNVRQSNRTRQGFVNRRNVKL 516
BLAST of XM_017359471.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7X2P6 ((uncharacterized protein LOC104234545 {ECO:0000313|RefSeq:XP_009786421.1, ECO:0000313|RefSeq:XP_009786422.1}))
HSP 1 Score: 580.096 bits (1494), Expect = 0.000e+0
Identity = 307/528 (58.14%), Postives = 368/528 (69.70%), Query Frame = 0
Match: A0A1U7X2P6 ((uncharacterized protein LOC104234545 {ECO:0000313|RefSeq:XP_009786421.1, ECO:0000313|RefSeq:XP_009786422.1}))
HSP 1 Score: 580.096 bits (1494), Expect = 0.000e+0
Identity = 307/528 (58.14%), Postives = 368/528 (69.70%), Query Frame = 0
Query: 9 EDSFLHNYNANDRRIASEFLSGWLPFLTKGLCDSCNRKLTHRVRSL-----------------------------CPG--DDSDKKSVGSLKD--GVIDAAETNSLGSWKDGENG---CAEPAVE---SDL---GANVCA-------ASDMIASSVPAGSGERRTSWADMAQEDELEGDEESEVTSTSRLSVANSASGDGTAEEKSVSKPGLSRDQREYIRFTNVKRKKDFACIERVNQKLVNILDGLELHTGVFSAAEQKRIVDYVYELEEMGKNGKLKARTYTAPQKWMRGKGRVTIQFGCCYNYAVDKKGNPPGILQNELVDPIPHLFKVIIRRLIRWHVLPTTCVPDSCIVNIYDKDDCIPPHIDNHDFLRPFCTVSFLSECDIVFGSNLKIIGPGDFAGSTAISLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMDETKWPVGYTPEPDLQGLQPLSYEADRSKHSNISKINHAGNLKAARSVDNSDRLK------ERGFFGPGPRRGRVNRQRLRLD 481
+D FL NYN + RIASEFLS WLPFL++ LC SC L+ R+RSL C G ++ D S+GS D + D A+TNSLGSWKDG G EP+V+ SD GA+ + S+ +SS+P + + + SWADMAQEDEL+ +E SE + S S N S + +S K LSR+QREYIRF NVKRKKDF C+ERVN K VNILDGLELH GVFSAAEQ RIV YV +L++MGKNG+LK RTYTAP KWMRGKGRVTIQFGCCYNYA DK GNPPGIL++E VDP+P L KV+IRRL++WHV+P TCVPDSCI+NIY++ DCIP HIDNHDF+RPFCTVSFLSEC+IVFGSNLKI+GPG+FAG+ AI LPVGSVLVLNGNGADVAKHCVPAVPTKRISITFR+MDE+K PVGY PE DLQGLQPLSYE DR K SN SK ++ ++A ++ +R+K + R+G NRQR ++
Sbjct: 12 DDPFLLNYNPEELRIASEFLSNWLPFLSRDLCHSCTNTLSDRIRSLNFKVGGDAECLKQPKNISVLTPERCDSDGCNGSQENCDNNSLGSWNDCGDLNDNADTNSLGSWKDGAGGGEPFEEPSVDRHSSDSCIDGADSVSRPVGEATTSEAFSSSLPVTTPKMKMSWADMAQEDELQAEEVSESIALS--SQVNGVSEEEITTPESKPKTELSREQREYIRFCNVKRKKDFICLERVNGKFVNILDGLELHKGVFSAAEQIRIVKYVEKLDQMGKNGELKERTYTAPAKWMRGKGRVTIQFGCCYNYAPDKIGNPPGILKSETVDPLPDLLKVMIRRLVKWHVMPPTCVPDSCIINIYEEGDCIPLHIDNHDFVRPFCTVSFLSECNIVFGSNLKIVGPGEFAGAIAIPLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRRMDESKRPVGYVPEQDLQGLQPLSYETDRQKKSNSSKPRYSARKQSALLEESMERVKMPMRRHSEPRYAGRYRQGPANRQRFSVN 537
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7C133 | E-Value: 0.000e+0, PID: 60.57 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| A0A7J0F5I0 | E-Value: 0.000e+0, PID: 63.97 | (2-oxoglutarate (2OG) and Fe(II)-dependent oxygena... [more] |
| A0A5B6Z2X6 | E-Value: 0.000e+0, PID: 59.92 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| A0A2R6R5S4 | E-Value: 0.000e+0, PID: 63.56 | (RNA demethylase {ECO:0000313|EMBL:PSS21354.1})[more] |
| A0A5B6Z3A8 | E-Value: 0.000e+0, PID: 60.50 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| A0A7J7I2I5 | E-Value: 0.000e+0, PID: 60.00 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| A0A1J6INP0 | E-Value: 0.000e+0, PID: 58.41 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| A0A068U154 | E-Value: 0.000e+0, PID: 61.78 | Fe2OG dioxygenase domain-containing protein {ECO:0... [more] |
| A0A6P6TL58 | E-Value: 0.000e+0, PID: 61.78 | (RNA demethylase ALKBH9B-like {ECO:0000313|RefSeq:... [more] |
| A0A1U7X2P6 | E-Value: 0.000e+0, PID: 58.14 | (uncharacterized protein LOC104234545 {ECO:0000313... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |