XM_017403492.1

Resource Type: 
Polypeptide
Name: 
XM_017403492.1
Identifier: 
XM_017403492.1-protein
Sequence: 
MTSRKFWSESQFPTPPLVKLEVEDSFQDQHAPLLKRSKLSSSTQQHESET
TAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVK
KEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHK
LVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRET
NPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRL
NYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVP
SSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEASSGTG
ELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNNPLSKDERES
LDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFR
GGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSGEGLGM
SRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR
Sequence Length: 
535
Sequence Checksum: 
f202384eccab1b1ed52bdcfc7343e050
View location in JBrowse: 
DCARv2_Chr6:23635577..23639501+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017403492.1, derives from mRNA, XM_017403492.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017403492.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017403492.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4MRZ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9467678.1}) (Fragment))

HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 342/521 (65.64%), Postives = 394/521 (75.62%), Query Frame = 0
 
Query:   18 VKLEVEDSFQDQHAPLLKRSKLSSSTQQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSGEGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 535
            VK+EVEDS +DQH PL KRSKLSSS QQ +  + +FP+PPSQYNPLDEPSPLGLRL+K+PSLLDLIQM L+ GN +K+G   KKE KG   S   DKLKASNFPA+ LKIGTWEYKSR+EGDLV KCYFAKHKLVWEVLDGGLKNKIEIQWSDI+ALKA YPDDEPGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QA++NRRH+LQCP GLLGKHFEKL+QCDPRLN+LSQQ EI L+SPYFE R SVFD++D  N   D+N +      +L+D  S SG  SS   + + D  G   E+FS ET  PSPSSVM+    E   +S   ELK L   D + VPGLH SMSMSDLVSHIEHR SE RTSNN  LS +ERESL+IL+EIS  LF+DSQ+  TSDE+ IM+RVNSL  LLQKDP   Q+     G S+   ++D +T    +      K++V ED   P  ES   S +G  M+RKDSVGELLLNLPRI SLP+F FNISEDF+ QAR
Sbjct:   24 VKMEVEDSLEDQHGPLNKRSKLSSSLQQCDMGSASFPIPPSQYNPLDEPSPLGLRLKKTPSLLDLIQMTLAKGNSSKVGIDAKKEHKGTTAS---DKLKASNFPASFLKIGTWEYKSRYEGDLVGKCYFAKHKLVWEVLDGGLKNKIEIQWSDIVALKANYPDDEPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQATINRRHFLQCPQGLLGKHFEKLMQCDPRLNFLSQQGEIVLESPYFESRVSVFDDTDKPNHGIDLNGEEGQNYLDLRDAASPSGGLSSPLSDDRQDLLGRPAERFSHET--PSPSSVMDTHAIEEIRNSRFEELKGLIDQDQIKVPGLHSSMSMSDLVSHIEHRISEQRTSNNFTLSAEERESLEILEEISHFLFSDSQYASTSDEQCIMSRVNSLCCLLQKDPMTAQNSQVNKGDSSTGVMVDKRTGEPHSG-----KNKVVEDFVMPDGESNSDSKQGPAMTRKDSVGELLLNLPRITSLPRFLFNISEDFDDQAR 534
[Close]
BLAST of XM_017403492.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LGU2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7135280.1}))

HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 342/521 (65.64%), Postives = 395/521 (75.82%), Query Frame = 0
 
Query:   18 VKLEVEDSFQDQHAPLLKRSKLSSSTQQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSGEGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 535
            VK+EVEDS +DQH PL KRSKLSSS QQ +  + +FP+PPSQYNPLDEPSPLGLRL+K+PSLLDLIQM L+ GN  K+G   KKEQKG   S   DKLKASNFPA+ L+IGTWEYKSR+EGDLV KCYFAKHKLVWEVLDGGLKNKIEIQWSDI+ALKA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QA++NRRH+LQCP GLLGKHFEKL+QCDPRLN+LSQQ EI L+SPYFEPR SVFD++D+ N   D N +      +L+D  S SG  SS   + + D  G   E+F  ET  PSPSSVM+    E   +S   ELK L   D + VPGLH SMSMSDLVSHIEHR SE RTSNN  LS +ERESL+IL+EIS  LF+DSQ+  TSDE+ IM+RVNSL  LLQKDP   Q+     G S+   ++D +T    +      K++V ED   P  ES   S +G  M+RKDSVGELLLNLPRIASLP+F FNISEDF++QAR
Sbjct:   24 VKMEVEDSLEDQHGPLNKRSKLSSSLQQCDMGSVSFPIPPSQYNPLDEPSPLGLRLKKTPSLLDLIQMTLAKGNSCKVGIHAKKEQKGTTAS---DKLKASNFPASFLRIGTWEYKSRYEGDLVGKCYFAKHKLVWEVLDGGLKNKIEIQWSDIVALKANYPDDGPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQATINRRHFLQCPQGLLGKHFEKLMQCDPRLNFLSQQGEIVLESPYFEPRVSVFDDTDEPNHGIDSNGEEGQNYLDLRDAASPSGGLSSPLSDDRQDLLGRPAERFPHET--PSPSSVMDTHAIEEIRNSRFEELKGLIDQDQIKVPGLHSSMSMSDLVSHIEHRISEQRTSNNFTLSAEERESLEILEEISHFLFSDSQYASTSDEQCIMSRVNSLCCLLQKDPMTAQNLQVNKGDSSTGVMVDKRTGEPHSG-----KNKVVEDFVMPDGESNSDSKQGPAMTRKDSVGELLLNLPRIASLPRFLFNISEDFDNQAR 534
[Close]
BLAST of XM_017403492.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V3WR38 ((Uncharacterized protein {ECO:0000313|EMBL:THG22787.1}))

HSP 1 Score: 655.21 bits (1689), Expect = 0.000e+0
Identity = 349/533 (65.48%), Postives = 399/533 (74.86%), Query Frame = 0
 
Query:    8 SESQFPTPPLVKLEVEDSFQDQHAPLLKRSKLSSSTQQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSG--EGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 535
            SESQ      VKLEVED  +D+H PL KRSKLSS T Q  S + +FP+P SQYNPLDEPSPLGLRL+KSPSLLDLIQM LS GN +K G  VKKE K  + S++ DKLKASNFPA+ L+IGTWEYKSR+EGDLVAKCY+AKHKLVWEVLDGGLKNKIEIQWSDI+ALKA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQAT DFTG QAS +RRH+LQC PGLLGKHFEKLIQCDPRLN+LSQQ EI L+SPYFEPR SVF++S++ N  +D+N +     FNLQD  S SG QSS   N Q D  G   EQF  ET  PSPSSVM+    E        ELK L   D + VPGLH SMSMSDLVSHIEHR  E RTSNN  LS++ER+SL+IL+EIS+CLF+DSQ+  TSDEK IM+RVNSL  LLQKDP   Q+   +G +++   ++D +T                   S   SES DVSG  +   M+RKDSVGELLLNLPRIASLPQF FNISEDF++QAR
Sbjct:   14 SESQSMKMVPVKLEVEDPLEDKHGPLNKRSKLSSHTPQCNSGSGSFPIP-SQYNPLDEPSPLGLRLKKSPSLLDLIQMTLSQGNASKFGTQVKKEHKATSASSATDKLKASNFPASFLRIGTWEYKSRYEGDLVAKCYYAKHKLVWEVLDGGLKNKIEIQWSDIMALKANYPDDRPGTLDVVLARQPLFFRETNPQPRKHTLWQATPDFTGGQASNHRRHFLQCLPGLLGKHFEKLIQCDPRLNFLSQQEEIVLESPYFEPRISVFEDSNESNHGFDLNGEEGQAFFNLQDSASPSGGQSSPRTNEQ-DLVGRPPEQFPCET--PSPSSVMDTHAIEEIRIRRVEELKGLINQDQIKVPGLHSSMSMSDLVSHIEHRILEQRTSNNFTLSEEERQSLEILEEISRCLFSDSQYTSTSDEKCIMSRVNSLCCLLQKDPMTAQNSRVKGDNNSFDVMVDKRTGE-------------PNSVSASASESNDVSGCNQAPAMARKDSVGELLLNLPRIASLPQFLFNISEDFDNQAR 529
[Close]
BLAST of XM_017403492.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AXX1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA60808.1}))

HSP 1 Score: 651.744 bits (1680), Expect = 0.000e+0
Identity = 356/543 (65.56%), Postives = 408/543 (75.14%), Query Frame = 0
 
Query:    1 MTSRKFWSESQFPTPPLV--KLEVEDSFQDQHAPLLKRSKLSSSTQQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQV-KSEVTEDSSTPHSESADVSG--EGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 535
            M S K   ESQ     +V  KLEVEDS +D+H PL KRSK     QQ    T A+PVPPSQYNPLDEPSPLGLRL+KSPSLLDLIQMKLS GN +K+    KKE KG+A S + DKLKASNFPA+ L+IGTWEYKSR+EGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI+ +KA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QAS+NRRH+LQCPPGLLGKHFEKLIQCDPRLN+LSQQAEI L+SPYFEP+ SVFD+S+      ++N    P  F+L+D  S SG QSSSSKN Q D  G  +E F  ET  PSPSSVM+    E    S   EL  L+  D + VPGLHP MSMSDLVSHIEHR SE RTSNN  LS +ER+SL++L EIS+CLF+DSQH  TSDE+ IM+RVNSL  LLQKDP  +Q+   +     D   MD+K   + N  +    +S+V ED  +P  ES +VSG  +   MSRKDSVG+LLLNLPRIASLPQF FNI ED ++QAR
Sbjct:    5 MNSGKAAPESQLRRGKMVPVKLEVEDSLEDEHGPLNKRSK-----QQRNLGTGAYPVPPSQYNPLDEPSPLGLRLKKSPSLLDLIQMKLSQGNASKVVLQAKKEHKGIAASATTDKLKASNFPASFLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIMGMKANYPDDGPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASINRRHFLQCPPGLLGKHFEKLIQCDPRLNFLSQQAEIVLESPYFEPKISVFDDSN------ELNDVEGPAFFDLRDAASPSGAQSSSSKNEQQDSVGRPREHFPLET--PSPSSVMDTHAIEEIRISRAEELMRLSNQDQIKVPGLHPLMSMSDLVSHIEHRISEQRTSNNFILSSEERQSLEML-EISRCLFSDSQHASTSDEQCIMSRVNSLCCLLQKDPLAIQNLQVKSDSGPDPDAMDDKRIGEPNSISASTGESKVAEDFPSPEGESGNVSGCKQAPAMSRKDSVGDLLLNLPRIASLPQFLFNIWEDSDNQAR 533
[Close]
BLAST of XM_017403492.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QG52 ((Homeobox protein cut-like {ECO:0000313|EMBL:PSS07561.1}))

HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0
Identity = 334/523 (63.86%), Postives = 396/523 (75.72%), Query Frame = 0
 
Query:   18 VKLEVEDSFQDQHAPLLKRSKLS--SSTQQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSGEGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 535
            VK+E+ED+ +DQH PL KRSKLS     Q+ +   + FP+PPSQYNPL+EPSPLGLRL+KSPSLLDLIQM LS GN  K+G+ VKKE     TS + DKLKASNFPA+ L IGTWEYKSR+EGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI+ALKA YPDDEPGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFT  QAS+NRRH+LQCP GLLGKHFEKLIQCDPRLN+LS Q +I L+SPYFEPRTSVFD+S++ N   D+N +     F      S SG QSS+  N + D  G  +E F R+T  PSPSSVM+    E   +S   ELK L   D + +PGLH SMSMSDLV+HIEHR SE RTSNN  LS ++R+SL ILD+IS+CLFTDS+H  TSD++ +M+RVNSL+ LLQKD   +Q+   +G + +D  + + +    +       K++V +D  TP  ES  VS +   MSRKDSVGELLLNLPRIASLPQF FNISED ++QAR
Sbjct:   22 VKVEMEDTLEDQHGPLNKRSKLSYPHPLQKSDMGPSNFPIPPSQYNPLEEPSPLGLRLKKSPSLLDLIQMTLSKGNALKVGSQVKKELNAAGTSAAADKLKASNFPASFLSIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIMALKANYPDDEPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTCGQASINRRHFLQCPQGLLGKHFEKLIQCDPRLNFLSLQGDIVLESPYFEPRTSVFDDSNEANHGIDLNGEEGQDFF----AGSPSGAQSSAMTNERQDLVGRPRELFPRKT--PSPSSVMDTHAIEGIRTSRFEELKGLLDQDQIKMPGLHSSMSMSDLVTHIEHRISEQRTSNNFTLSDEDRQSLVILDDISRCLFTDSEHASTSDDQCVMSRVNSLFCLLQKDSVTVQNSQVKGDNRSDAMVNNKRLGRSIG------KTKVVDDFITPEDESNPVSKQAPAMSRKDSVGELLLNLPRIASLPQFLFNISEDTDNQAR 532
[Close]
BLAST of XM_017403492.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AW36 ((Uncharacterized protein {ECO:0000313|EMBL:MPA60809.1}))

HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0
Identity = 358/549 (65.21%), Postives = 411/549 (74.86%), Query Frame = 0
 
Query:    1 MTSRKFWSESQFPTPPLV--KLEVEDSFQDQHAPLLKRSKLSSSTQQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEIT---LKSPYFEPRTSVFD---ESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQV-KSEVTEDSSTPHSESADVSG--EGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 535
            M S K   ESQ     +V  KLEVEDS +D+H PL KRSK     QQ    T A+PVPPSQYNPLDEPSPLGLRL+KSPSLLDLIQMKLS GN +K+    KKE KG+A S + DKLKASNFPA+ L+IGTWEYKSR+EGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI+ +KA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QAS+NRRH+LQCPPGLLGKHFEKLIQCDPRLN+LSQQAEI    L+SPYFEP+ SVFD   E+DDG              F+L+D  S SG QSSSSKN Q D  G   E FSRET  PSPSSVM+    E   SS   ELK L+  D + VPG HPSMSMSDLVS IEHR SE RTSNN  LS +E++SL+IL++I++CLF+DSQ+  TSDE+SIM+RVNSL  LLQKDP  +Q+   +  +  D  ++D+K   +L   +    +S+  ED   P  E +DVSG  +   MSRKDSVGELLLNLPRIASLPQF FNI EDF++QAR
Sbjct:    5 MNSGKAAPESQLRRGKMVPVKLEVEDSLEDEHGPLNKRSK-----QQRNLGTGAYPVPPSQYNPLDEPSPLGLRLKKSPSLLDLIQMKLSQGNASKVVLQAKKEHKGIAASATTDKLKASNFPASFLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIMGMKANYPDDGPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASINRRHFLQCPPGLLGKHFEKLIQCDPRLNFLSQQAEIVLEGLESPYFEPKISVFDDPNETDDGEGHT---------YFDLRDAASPSGAQSSSSKNEQ-DPVGRPPEHFSRET--PSPSSVMDTHAIEEIRSSRAEELKRLSNQDQIKVPGFHPSMSMSDLVSQIEHRISEQRTSNNFILSSEEQQSLEILEDINRCLFSDSQYASTSDEQSIMSRVNSLCCLLQKDPVTVQNLQVKSDNGPD--VIDDKRICELYSMSASAGESKTAEDFPKPEGEPSDVSGRKQAPAMSRKDSVGELLLNLPRIASLPQFLFNILEDFDNQAR 534
[Close]
BLAST of XM_017403492.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0H2M2 ((Uncharacterized protein {ECO:0000313|EMBL:GFZ17265.1}))

HSP 1 Score: 643.654 bits (1659), Expect = 0.000e+0
Identity = 336/523 (64.24%), Postives = 390/523 (74.57%), Query Frame = 0
 
Query:   18 VKLEVEDSFQDQHAPLLKRSKLSSSTQQHESET--TAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNNPLSKDE-RESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSGEGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 535
            VK+EVEDS +DQH PL KRSKL+S      S+     FP+PPS+YNPLDEPSPLGLRL+KSPSLLDLIQM LS GN  K+G+ V KE K   TS + DKLKASNFPA+ L+IGTWEYKSR+EGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI ALKA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QAS+NRRH+LQCP GLLGKHFEKLIQCDPRLN+LSQQ         FEPR+SVFD++++ N   D+N +     F      S SG QSS+  N + D  G  +EQF RET  PSPSSVM+    E   +S   ELK L   D + VPGLH SMSMSDLV+HIEHR SE RTSNN +  DE ++SL ILD+IS+CLFTDS H  TSDE+ +M+RVNSL+ LLQKDP  +Q+   +G +S+D  + D +    +       K++V +D  TP  ES  VS +   MSRKDSVGELLLNLPRIASLPQF FNISED ++QAR
Sbjct:   22 VKVEVEDSLEDQHGPLNKRSKLASPLLLQHSDMGPVTFPIPPSEYNPLDEPSPLGLRLKKSPSLLDLIQMTLSQGNALKVGSQVNKEHKATGTSAAADKLKASNFPASFLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDITALKANYPDDGPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASINRRHFLQCPQGLLGKHFEKLIQCDPRLNFLSQQG--------FEPRSSVFDDTNEANHGIDLNGEEGQDFF----AGSPSGAQSSAMTNERQDLVGRPREQFPRET--PSPSSVMDTHAIEGIRTSRFEELKGLLDQDQIKVPGLHSSMSMSDLVTHIEHRISEQRTSNNFILPDEDQQSLAILDDISRCLFTDSHHASTSDEQCVMSRVNSLFCLLQKDPVTVQNSQVKGDNSSDAMVDDKRIGRLIG------KTKVVDDFITPEDESNSVSKQAPAMSRKDSVGELLLNLPRIASLPQFLFNISEDSDNQAR 524
[Close]
BLAST of XM_017403492.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BBK0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8540565.1}))

HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 348/524 (66.41%), Postives = 400/524 (76.34%), Query Frame = 0
 
Query:   18 VKLEVEDSFQDQHAPLLKRSKLSSSTQQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRP-PIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSG--EGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 535
            VK EVE+S +D+H PL KRSKLSS+  Q    T AFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQM+LS GN +K+G   KKE KG+  S++ DKLKASNFPA+ L+IGTWEYKSR+EGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI+A+KA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QAS++RRH+LQCP GLLGKHFEKLIQCDPRLN+LSQ+ EI L+SPYFEP+ SVFD+S++ N       DG     F+L+D  S SG QSSSSK  Q D  G  +E F RET  PSPSSVM+    E    S   ELK L+  D + VPGLHPS+SMSDLVS IEHR SE R+SNN  LS +ERESL+IL+EISKCLF+++Q   TSDE+ IM+RVNSL  LLQKD   +Q+  F+     D+T  DNK   +     P   S    +      ES DVSG  +   MSRKDSVG+LLLNLPRIASLPQF FNISEDF++QAR
Sbjct:   24 VKREVEESLEDEHGPLNKRSKLSSAPPQCNLGTGAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMRLSQGNVSKVGPEAKKEHKGIPASSTTDKLKASNFPASFLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIMAMKANYPDDGPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASIHRRHFLQCPQGLLGKHFEKLIQCDPRLNFLSQKPEIVLESPYFEPKISVFDDSNELN-------DGEGHSFFDLRDAASPSGAQSSSSKIEQQDSVGRPREHFPRET--PSPSSVMDTHAIEEIRISRAEELKRLSDHDQIKVPGLHPSISMSDLVSQIEHRISEQRSSNNFILSSEERESLEILEEISKCLFSETQLASTSDEQCIMSRVNSLCCLLQKDSLAVQNSQFKSDSGPDIT--DNKRTGE-----PNTMSVSAGECKVAEGESGDVSGCKQAPAMSRKDSVGDLLLNLPRIASLPQFLFNISEDFDNQAR 531
[Close]
BLAST of XM_017403492.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PDA1 ((Homeobox protein cut-like {ECO:0000313|EMBL:PSR89373.1}))

HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 336/523 (64.24%), Postives = 390/523 (74.57%), Query Frame = 0
 
Query:   18 VKLEVEDSFQDQHAPLLKRSKLSSSTQQHESET--TAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVMENGMNEA--SSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNNPLSKDE-RESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSGEGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 535
            VK+EVEDS +DQ+ PL KRSKL+S      S+     FP+PPS+YNPLDEPSPLGLRL+KSPSLLDLIQM LS GN  K+G+ VKKE K   TS + DKLKASNFPA+ L+IGTWEYKSR+EGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI ALKA YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QAS+NRRH+LQCP GLLGKHFEKLIQCDPRL++LSQQ         FEPR+SVFD++++ N   D+N D     F      S SG QSS+  N + D  G  +EQF RET  PSPSSVM+    E   +S   ELK L   D + VPGLH SMSMSDLV+HIEHR SE RTSNN +  DE ++SL ILD+IS+CLFTDS H  TSDE+ +M+RVNSL+ LLQKDP  +Q+   +G +S+D  + D +    +       K++V +D  TP  ES  VS +   MSRKDSVGELLLNLPRIASLPQF FNISED  +QAR
Sbjct:   22 VKVEVEDSLEDQNGPLNKRSKLASPLLLQHSDMGPVTFPIPPSEYNPLDEPSPLGLRLKKSPSLLDLIQMTLSQGNALKVGSQVKKEHKATGTSAAADKLKASNFPASFLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDITALKANYPDDGPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASINRRHFLQCPQGLLGKHFEKLIQCDPRLHFLSQQG--------FEPRSSVFDDTNEANHGIDLNGDEGQDFF----AGSPSGAQSSAMTNERQDLVGRPREQFPRET--PSPSSVMDTHAIEGIRTSRFEELKGLLDQDQIKVPGLHSSMSMSDLVTHIEHRISEQRTSNNFILPDEDQQSLAILDDISRCLFTDSHHASTSDEQRVMSRVNSLFCLLQKDPVTVQNSQVKGDNSSDAMVDDKRLGRLIG------KTKVVDDFITPEDESNSVSKQAPAMSRKDSVGELLLNLPRIASLPQFLFNISEDTGNQAR 524
[Close]
BLAST of XM_017403492.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HYM2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5957226.1}))

HSP 1 Score: 637.876 bits (1644), Expect = 0.000e+0
Identity = 340/540 (62.96%), Postives = 389/540 (72.04%), Query Frame = 0
 
Query:   18 VKLEVEDSFQDQHAPLLKRSKLSS--------------------STQQHESETTAFPVPPSQYNPLDEPSPLGLRLRKSPSLLDLIQMKLSHGNKTKLGAPVKKEQKGVATSNSNDKLKASNFPATLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDILALKATYPDDEPGTLDVVLSRQPLFFRETNPQPRKHTLWQATSDFTGEQASMNRRHYLQCPPGLLGKHFEKLIQCDPRLNYLSQQAEITLKSPYFEPRTSVFDESDDGNSKYDMNRDGRPPIFNLQDVPSSSGPQSSSSKNGQYDFHGTHQEQFSRETPSPSPSSVME-NGMNEASSGTGELKNLNGWDNMNVPGLHPSMSMSDLVSHIEHRFSEHRTSNN-PLSKDERESLDILDEISKCLFTDSQHVPTSDEKSIMTRVNSLYSLLQKDPTPLQDFNFRGGHSNDMTLMDNKTKYQLNCFAPQVKSEVTEDSSTPHSESADVSGEGLGMSRKDSVGELLLNLPRIASLPQFFFNISEDFNSQAR 535
            VKLE +DS +D H PL KRSKLSS                      Q+   E   FP+PPSQYNPLDEPSPLGLRL+KSPSLLDLIQM LS GN  K+G   KKE    + S +NDKLKASNFP++LLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDI+AL+A YPDD PGTLDVVL+RQPLFFRETNPQPRKHTLWQATSDFTG QAS++RRH+LQCP GLLGKHFEKLIQCDPRLN+LSQQ EI L+SPYFEPR S+FD+S++ N ++D+N + R   F+L+D  S S  Q                         PSPSSVM+ + + E  S   ELK L   D + VP L  SMSMSDLVSHIEHRFSE RTSNN  LS +ER+SL+ILDEI++CLF+DSQ    SDEK IM+RVNSL  LLQKD    Q+   +G  S+D+ +MD K +      A   +S+V ED +TP SE   VS     M+RKDSVGELLLNLPRIASLPQF FNISEDFNSQAR
Sbjct:   24 VKLEAKDSSEDHHGPLNKRSKLSSPPPIRVFIGHVCFRGKWKWKMQQECNLELGGFPIPPSQYNPLDEPSPLGLRLKKSPSLLDLIQMTLSQGNSPKVGTQAKKEHNASSVSGANDKLKASNFPSSLLKIGTWEYKSRHEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIMALEAKYPDDAPGTLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASIHRRHFLQCPQGLLGKHFEKLIQCDPRLNFLSQQGEIVLESPYFEPRISMFDDSNELNREFDLNGEERQAFFDLRDTASPSRAQ-------------------------PSPSSVMDTHAIEEIRSRAEELKRLIEKDQIKVPELRSSMSMSDLVSHIEHRFSEQRTSNNFTLSVEERQSLEILDEITRCLFSDSQLTLASDEKCIMSRVNSLCCLLQKDSMTSQNLQVKGDDSSDV-IMDKKIREPNKLSASDGESKVLEDLTTPESE-PKVS----AMTRKDSVGELLLNLPRIASLPQFLFNISEDFNSQAR 532
Match NameStatsDescription
A0A6A4MRZ5E-Value: 0.000e+0, PID: 65.64(Uncharacterized protein {ECO:0000313|EMBL:KAE9467... [more]
A0A834LGU2E-Value: 0.000e+0, PID: 65.64(Uncharacterized protein {ECO:0000313|EMBL:KAF7135... [more]
A0A4V3WR38E-Value: 0.000e+0, PID: 65.48(Uncharacterized protein {ECO:0000313|EMBL:THG2278... [more]
A0A5B7AXX1E-Value: 0.000e+0, PID: 65.56(Uncharacterized protein {ECO:0000313|EMBL:MPA6080... [more]
A0A2R6QG52E-Value: 0.000e+0, PID: 63.86(Homeobox protein cut-like {ECO:0000313|EMBL:PSS07... [more]
A0A5B7AW36E-Value: 0.000e+0, PID: 65.21(Uncharacterized protein {ECO:0000313|EMBL:MPA6080... [more]
A0A7J0H2M2E-Value: 0.000e+0, PID: 64.24(Uncharacterized protein {ECO:0000313|EMBL:GFZ1726... [more]
A0A5J5BBK0E-Value: 0.000e+0, PID: 66.41(Uncharacterized protein {ECO:0000313|EMBL:KAA8540... [more]
A0A2R6PDA1E-Value: 0.000e+0, PID: 64.24(Homeobox protein cut-like {ECO:0000313|EMBL:PSR89... [more]
A0A7J7HYM2E-Value: 0.000e+0, PID: 62.96(Uncharacterized protein {ECO:0000313|EMBL:KAF5957... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.