Resource Type:
Polypeptide
Name:
XM_017359486.1
Identifier:
XM_017359486.1-protein
Sequence:
MPQKRFDADALGVVTICLVALFVVFGLFCIVYSFYFRTRIRRQGFTRLRY
FSGPWIIRIIFILLAIWWCVGEIIRLNLLRSEGRILNVNLEWQRTICKGY
IVSNLGFAEPCFLLTLVFLLYGSLQKTEARTLRHRWNCKTAGYVVLYCCP
MFVLQLMVIIVGPKLNKRGSYLHKLPHYFTNIVAPSMRKNGVDIALCTYP
LLSTTFLGIFDIVLTTYLVWLGRQILYLVINKVLHKRVYILILSISSFVS
FRVILLGLSVLSKPEHVWFELLSFLAFLSLLCCAGLGVCILVYLPIADSL
ALRNVQDMEARSGDDQHDTVSLITNQSSLEEISAGRTSGTSAKRGSISFR
TIDKDQISGTFVELSLFSPGQHSSPPGSP
Sequence Length:
379
Sequence Checksum:
c361d1ad5e7fc994b45edd22977ea86d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017359486.1, derives from mRNA, XM_017359486.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017359486.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017359486.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HIY7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5951954.1}))
HSP 1 Score: 516.153 bits (1328), Expect = 1.375e-180
Identity = 260/386 (67.36%), Postives = 305/386 (79.02%), Query Frame = 0
Match: A0A7J7HIY7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5951954.1}))
HSP 1 Score: 516.153 bits (1328), Expect = 1.375e-180
Identity = 260/386 (67.36%), Postives = 305/386 (79.02%), Query Frame = 0
Query: 1 MPQKRFDADALGVVTICLVALFVVFGLFCIVYSFYFRTRIRRQGFTRLRYFSGPWIIRIIFILLAIWWCVGEIIRLNLLRSEGRILN-VNLEWQRTICKGYIVSNLGFAEPCFLLTLVFLLYGSLQKTEARTLRHRWNCKTAGYVVLYCCPMFVLQLMVIIVGPKLNKRGSYLHKLPHYFTNIVAPSMRKNGVDIALCTYPLLSTTFLGIFDIVLTTYLVWLGRQILYLVINKVLHKRVYILILSISSFVSFRVILLGLSVLSKPEHVWFELLSFLAFLSLLCCAGLGVCILVYLPIADSLALRNVQDMEAR---SGDDQHDTVSLITNQSSLEEI--SAGRTSGTSAKRGSISFRTIDKDQ-ISGTFVELSLFSPGQHSSPPGSP 379
MP RF ADALGVVTICLVA+ V+ GLFCIVYS YFR+ IR QGF +L YF+GPWIIRI FIL AIWW +GEI+RL+LLR EGR+LN +NL+WQRT+CK YI+SNLGFAEPC LTLVFLL SLQ+TE+ L +WN KTAGYV+LYC P+FVLQ +VI+VGP N ++HKLP+YFT S + D+ALCTYPLLST FLGIF IVLTTYL W+GR+IL+LVINK L +RVY LI S+SSF RV+ LGLSVLS+PEH FE +FLAFLSL CCAG+G+CILVY P+ADSLALRN+QD+EAR S + Q DT+SLI NQS LEEI S GR+S SA RGSISFRT++KD+ SG VE SL SP QHS+PPGSP
Sbjct: 1 MPLTRFVADALGVVTICLVAILVLLGLFCIVYSSYFRSHIRSQGFIQLNYFTGPWIIRIAFILFAIWWGIGEIVRLSLLRQEGRVLNALNLKWQRTVCKCYILSNLGFAEPCLFLTLVFLLRASLQETESGILSRKWNGKTAGYVLLYCLPVFVLQFIVILVGPTFNNDERFVHKLPYYFTETAFTSTKDQ--DVALCTYPLLSTIFLGIFAIVLTTYLFWIGRRILHLVINKGLQRRVYTLIFSVSSFFPLRVLFLGLSVLSRPEHYLFEAFAFLAFLSLFCCAGVGICILVYCPVADSLALRNLQDVEARRRISDELQTDTISLIANQSPLEEIVESPGRSSAASANRGSISFRTMEKDETTSGAVVEFSLLSPSQHSTPPGSP 384
BLAST of XM_017359486.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4AV61 ((uncharacterized protein LOC107434209 {ECO:0000313|RefSeq:XP_015901131.1, ECO:0000313|RefSeq:XP_024923149.1}))
HSP 1 Score: 481.1 bits (1237), Expect = 6.978e-168
Identity = 250/386 (64.77%), Postives = 294/386 (76.17%), Query Frame = 0
Match: A0A6P4AV61 ((uncharacterized protein LOC107434209 {ECO:0000313|RefSeq:XP_015901131.1, ECO:0000313|RefSeq:XP_024923149.1}))
HSP 1 Score: 481.1 bits (1237), Expect = 6.978e-168
Identity = 250/386 (64.77%), Postives = 294/386 (76.17%), Query Frame = 0
Query: 1 MPQKRFDADALGVVTICLVALFVVFGLFCIVYSFYFRTRIRRQGFTRLRYFSGPWIIRIIFILLAIWWCVGEIIRLNLLRSEGRILN-VNLEWQRTICKGYIVSNLGFAEPCFLLTLVFLLYGSLQKTEARTLRHRWNCKTAGYVVLYCCPMFVLQLMVIIVGPKLNKRGSYLHKLPHYFTNIVAPSMRKNGVDIALCTYPLLSTTFLGIFDIVLTTYLVWLGRQILYLVINKVLHKRVYILILSISSFVSFRVILLGLSVLSKPEHVWFELLSFLAFLSLLCCAGLGVCILVYLPIADSLALRNVQDMEARS--GDDQHDTVSLITNQSSLEE---ISAGRTSGTSAKRGSISFRTIDKDQIS-GTFVELSLFSPGQHSSPPGSP 379
MP R ADA GV+TICLVAL V+ GL CI YSFYFR+RIR QGF +L YFSGPWIIRI FIL AIWW +GEI RL+LLR EGR+LN +N +WQ +CK YIVSNLGFAEPC LTLVFLL LQ+ E+ L +WN KTAGYV+LYC P+FVLQL VI+VGP+LNK + L K+PHYFT S + DIALCTYPLLST LG+F +LT YL +LGR+IL LVINK L +RVY LI S+SSF+ RV+LLG SVLSKPEH FE LSF AFL+LLCCAG+ +C+LVY P+ADSLAL N+ D+EAR DD++DT+SLI NQS LEE IS R S S KRGSISFRT++K+ S G FVELSLFSP + ++PPGSP
Sbjct: 1 MPLTRVVADAFGVLTICLVALLVILGLLCIGYSFYFRSRIRSQGFFQLNYFSGPWIIRITFILFAIWWGLGEIFRLSLLRREGRVLNSLNSKWQENVCKCYIVSNLGFAEPCLFLTLVFLLRAPLQRMESGILSRQWNAKTAGYVLLYCFPVFVLQLFVILVGPRLNKNKN-LRKMPHYFT-----STMRMADDIALCTYPLLSTILLGLFATILTAYLFYLGRRILKLVINKGLQRRVYTLIFSVSSFLPLRVLLLGFSVLSKPEHFQFEALSFSAFLALLCCAGVCICMLVYFPVADSLALGNLHDLEARRRISDDRNDTISLIANQSHLEESTVISPDRNSDASTKRGSISFRTLEKEGSSRGNFVELSLFSPSRDATPPGSP 380
BLAST of XM_017359486.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4EES7 ((uncharacterized protein LOC108988932 {ECO:0000313|RefSeq:XP_018817893.1}))
HSP 1 Score: 479.174 bits (1232), Expect = 4.237e-167
Identity = 246/385 (63.90%), Postives = 286/385 (74.29%), Query Frame = 0
Match: A0A2I4EES7 ((uncharacterized protein LOC108988932 {ECO:0000313|RefSeq:XP_018817893.1}))
HSP 1 Score: 479.174 bits (1232), Expect = 4.237e-167
Identity = 246/385 (63.90%), Postives = 286/385 (74.29%), Query Frame = 0
Query: 1 MPQKRFDADALGVVTICLVALFVVFGLFCIVYSFYFRTRIRRQGFTRLRYFSGPWIIRIIFILLAIWWCVGEIIRLNLLRSEGRILNVNLEWQRTICKGYIVSNLGFAEPCFLLTLVFLLYGSLQKTEARTLRHRWNCKTAGYVVLYCCPMFVLQLMVIIVGPKLNKRGSYLHKLPHYFTNIVAPSMRKNGVDIALCTYPLLSTTFLGIFDIVLTTYLVWLGRQILYLVINKVLHKRVYILILSISSFVSFRVILLGLSVLSKPEHVWFELLSFLAFLSLLCCAGLGVCILVYLPIADSLALRNVQDMEARS--GDDQHDTVSLITNQSSLEE---ISAGRTSGTSAKRGSISFRTIDKDQIS-GTFVELSLFSPGQHSSPPGSP 379
MP R ADA GVVTICLVAL +V GL CI+YSFYFR+RIR +G +L YFSGPWIIRI FIL IWW GE+IRL+ R ++NL+WQ T+CKGYIVSNLGFAEPC LTLVFLL LQ+TE L RWN KTAG V+LYC P+F+LQL VI++GP+LNK SYL KLP YF + S + DIALCTYPLLST FLGIF ++LT YL WLG +IL LVINK L KRVY LI S+SSF+ RV+ LGLSVLSKPEH FE L LAFL++LCCAG+ +C+LVY P+ADSLAL N++D+EAR DD +D +SLI NQS LEE IS R S S KRGSISFRT +KD S G FVELSLFSP Q ++PPGSP
Sbjct: 1 MPLTRSSADAFGVVTICLVALLIVLGLLCIIYSFYFRSRIRSRGCIQLSYFSGPWIIRITFILFVIWWGFGEVIRLSFFRR-----SLNLKWQETVCKGYIVSNLGFAEPCLFLTLVFLLRAPLQETELGILSRRWNGKTAGCVLLYCLPVFILQLFVILIGPQLNKDKSYLRKLPRYFMSTAVASRTEKTDDIALCTYPLLSTIFLGIFAMILTAYLFWLGSRILKLVINKGLQKRVYTLIFSVSSFLPLRVLFLGLSVLSKPEHFLFETLVLLAFLAILCCAGVCICMLVYFPVADSLALGNLRDIEARRRVDDDHNDAISLIANQSHLEESGGISPSRNSDASTKRGSISFRTFEKDGNSTGAFVELSLFSPSQDATPPGSP 380
BLAST of XM_017359486.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067L202 ((Uncharacterized protein {ECO:0000313|EMBL:KDP42467.1}))
HSP 1 Score: 471.855 bits (1213), Expect = 3.606e-164
Identity = 247/386 (63.99%), Postives = 292/386 (75.65%), Query Frame = 0
Match: A0A067L202 ((Uncharacterized protein {ECO:0000313|EMBL:KDP42467.1}))
HSP 1 Score: 471.855 bits (1213), Expect = 3.606e-164
Identity = 247/386 (63.99%), Postives = 292/386 (75.65%), Query Frame = 0
Query: 1 MPQKRFDADALGVVTICLVALFVVFGLFCIVYSFYFRTRIRRQGFTRLRYFSGPWIIRIIFILLAIWWCVGEIIRLNLLRSEGRILN-VNLEWQRTICKGYIVSNLGFAEPCFLLTLVFLLYGSLQKTEARTLRHRWNCKTAGYVVLYCCPMFVLQLMVIIVGPKLNKRGSYLHKLPHYFTNIVAPSMRKNGVDIALCTYPLLSTTFLGIFDIVLTTYLVWLGRQILYLVINKVLHKRVYILILSISSFVSFRVILLGLSVLSKPEHVWFELLSFLAFLSLLCCAGLGVCILVYLPIADSLALRNVQDMEARSG--DDQHDTVSLITNQSSLEE---ISAGRTSGTSAKRGSISFRTIDKDQIS-GTFVELSLFSPGQHSSPPGSP 379
MP RF ADA G VTICLVA+ ++ GLFCI YS YFR+R+R Q F +L YFSGPWIIRI FIL IWW GEIIRL+LLR EGR+LN ++L+WQ T+CKGYIVSNLGFAEPC LTLVFLL LQK E+ L +WN KTAGYV+LYC P+F LQL +I++GP+L K L KLPHYFT+ P + IALCTYPLL+T LG+F +LT YL WLGR+IL LVINK L KRVY LI S+SSF+ RV+LLGLSVLSKPEH FE L+F AFL+LLCCA + +C+LVY P+ADSLAL N+QD+EAR D+ +DT+SLI NQS LEE +S GR S S KRGSISFRT D+D S G FVELSLFSP + ++PPGSP
Sbjct: 1 MPLTRFAADAFGAVTICLVAILILLGLFCIAYSLYFRSRVRNQDFVQLTYFSGPWIIRITFILFVIWWGFGEIIRLSLLRREGRVLNALDLKWQETVCKGYIVSNLGFAEPCLFLTLVFLLRAPLQKMESGILSRKWNRKTAGYVLLYCLPIFALQLFIILIGPQLRKNKGSLRKLPHYFTSTATPKIENAPDVIALCTYPLLNTILLGLFATILTVYLFWLGRRILKLVINKGLQKRVYTLIFSVSSFLPLRVLLLGLSVLSKPEHFLFEALAFSAFLALLCCASVCICMLVYCPVADSLALANLQDLEARRRLFDEHNDTISLIANQSHLEESSRVSPGRNSDASTKRGSISFRTYDRDGASTGQFVELSLFSPSRDATPPGSP 386
BLAST of XM_017359486.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0ES20 ((Uncharacterized protein {ECO:0000313|EMBL:GFY89284.1}))
HSP 1 Score: 471.47 bits (1212), Expect = 7.648e-164
Identity = 245/382 (64.14%), Postives = 295/382 (77.23%), Query Frame = 0
Match: A0A7J0ES20 ((Uncharacterized protein {ECO:0000313|EMBL:GFY89284.1}))
HSP 1 Score: 471.47 bits (1212), Expect = 7.648e-164
Identity = 245/382 (64.14%), Postives = 295/382 (77.23%), Query Frame = 0
Query: 1 MPQKRFDADALGVVTICLVALFVVFGLFCIVYSFYFRTRIRRQGFTRLRYFSGPWIIRIIFILLAIWWCVGEIIRLNLLRSEGRILN-VNLEWQRTICKGYIVSNLGFAEPCFLLTLVFLLYGSLQKTEARTLRHRWNCKTAGYVVLYCCPMFVLQLMVIIVGPKLNKRGSYLHKLPHYFTNIVAPSMRKNGVDIALCTYPLLSTTFLGIFDIVLTTYLVWLGRQILYLVINKVLHKRVYILILSISSFVSFRVILLGLSVLSKPEHVWFELLSFLAFLSLLCCAGLGVCILVYLPIADSLALRNVQDMEARS--GDDQHDTVSLITNQSSLEEI--SAGRTSGTSAKRGSISFRTIDKDQISGTFVELSLFSPGQHSSPPG 377
MP RF ADAL VVTICLVAL V+ GLFCI+Y+FYFR++IR QGF +L YFSGPWIIRI FIL AIWW GEI+RLNLLR EGR+LN ++L+WQ+T+CK YIVSNLGFAEPC LTLVFLL SLQKTE+ TL + N KTAGY++LYC P+FVLQL+V +VGP+ NK S HKLPHYFT+I S K G + C YPLLST F+G+F VL+TYL WLG++IL LVINK L KRVY L+ S+ SF RV+ LGL+VL PE + FE+L+FLAFLS+LCC+G+G+ ILVY P+ADSLALRN+QD+EAR D+ DT+SLI Q EEI S R+S TS RGSISFRT++KD+ S FV+L FSP QHS+PPG
Sbjct: 1 MPLTRFIADALSVVTICLVALLVLLGLFCILYNFYFRSQIRSQGFIQLSYFSGPWIIRITFILFAIWWGFGEIVRLNLLRQEGRVLNALDLKWQKTVCKCYIVSNLGFAEPCLFLTLVFLLRASLQKTESETLSRKCNGKTAGYILLYCLPLFVLQLIVTLVGPEFNKGESITHKLPHYFTSIAVESKTK-GQHVVFCIYPLLSTIFVGLFATVLSTYLFWLGKRILNLVINKGLQKRVYTLMFSVCSFFLLRVLFLGLTVLYTPEQLQFEVLAFLAFLSILCCSGVGIGILVYFPVADSLALRNLQDIEARRMISDEHIDTISLIAYQHPREEIVESPERSSTTSENRGSISFRTMEKDEPSRAFVQLGFFSPSQHSTPPG 381
BLAST of XM_017359486.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RGJ5 ((ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase {ECO:0000313|EMBL:PSS29118.1}))
HSP 1 Score: 469.544 bits (1207), Expect = 3.812e-163
Identity = 244/382 (63.87%), Postives = 294/382 (76.96%), Query Frame = 0
Match: A0A2R6RGJ5 ((ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase {ECO:0000313|EMBL:PSS29118.1}))
HSP 1 Score: 469.544 bits (1207), Expect = 3.812e-163
Identity = 244/382 (63.87%), Postives = 294/382 (76.96%), Query Frame = 0
Query: 1 MPQKRFDADALGVVTICLVALFVVFGLFCIVYSFYFRTRIRRQGFTRLRYFSGPWIIRIIFILLAIWWCVGEIIRLNLLRSEGRILN-VNLEWQRTICKGYIVSNLGFAEPCFLLTLVFLLYGSLQKTEARTLRHRWNCKTAGYVVLYCCPMFVLQLMVIIVGPKLNKRGSYLHKLPHYFTNIVAPSMRKNGVDIALCTYPLLSTTFLGIFDIVLTTYLVWLGRQILYLVINKVLHKRVYILILSISSFVSFRVILLGLSVLSKPEHVWFELLSFLAFLSLLCCAGLGVCILVYLPIADSLALRNVQDMEARS--GDDQHDTVSLITNQSSLEEI--SAGRTSGTSAKRGSISFRTIDKDQISGTFVELSLFSPGQHSSPPG 377
MP R ADAL VVTICLVAL V+ GLFCI+Y+FYFR++IR QGF +L YFSGPWIIRI FIL AIWW GEI+RLNLLR EGR+LN ++L+WQ+T+CK YIVSNLGFAEPC LTLVFLL SLQKTE+ TL + N KTAGY++LYC P+FVLQL+V +VGP+ NK S +HKLPHYFT+I S K G + C YPLLST F+G+F VL+ YL WLGR+IL LVINK L KRVY L+ S+ SF RV+ LGL+VL PE + FE+L+FLAFLS+LCC+G+G+ ILVY P+ADSLALRN+QD+EAR D+ DT+SLI Q EEI S R+S TS RGSISFRT++KD+ S FV+L FSP QHS+PPG
Sbjct: 1 MPLTRLIADALSVVTICLVALLVLLGLFCILYNFYFRSQIRSQGFIQLSYFSGPWIIRITFILFAIWWGFGEIVRLNLLRQEGRVLNALDLKWQKTVCKCYIVSNLGFAEPCLFLTLVFLLRASLQKTESETLSRKCNGKTAGYILLYCLPLFVLQLIVTLVGPEFNKGESIMHKLPHYFTSIAVESKTK-GQHVVFCIYPLLSTIFVGLFATVLSAYLFWLGRRILNLVINKGLQKRVYTLMFSVCSFFLLRVLFLGLTVLYTPEQLQFEVLAFLAFLSILCCSGVGIGILVYFPVADSLALRNLQDIEARRMISDEHIDTISLIAYQHPREEIVESPERSSTTSENRGSISFRTMEKDEPSRAFVQLGFFSPSQHSTPPG 381
BLAST of XM_017359486.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1V6U7 ((Uncharacterized protein {ECO:0000313|EMBL:KAB1208569.1}))
HSP 1 Score: 464.537 bits (1194), Expect = 2.198e-161
Identity = 252/385 (65.45%), Postives = 289/385 (75.06%), Query Frame = 0
Match: A0A6A1V6U7 ((Uncharacterized protein {ECO:0000313|EMBL:KAB1208569.1}))
HSP 1 Score: 464.537 bits (1194), Expect = 2.198e-161
Identity = 252/385 (65.45%), Postives = 289/385 (75.06%), Query Frame = 0
Query: 1 MPQKRFDADALGVVTICLVALFVVFGLFCIVYSFYFRTRIRRQGFTRLRYFSGPWIIRIIFILLAIWWCVGEIIRLNLLRSEGRILNVNLEWQRTICKGYIVSNLGFAEPCFLLTLVFLLYGSLQKTEARTLRHRWNCKTAGYVVLYCCPMFVLQLMVIIVGPKLNKRGSYLHKLPHYFTNIVAPSMRKNGVDIALCTYPLLSTTFLGIFDIVLTTYLVWLGRQILYLVINKVLHKRVYILILSISSFVSFRVILLGLSVLSKPEHVWFELLSFLAFLSLLCCAGLGVCILVYLPIADSLALRNVQDMEARS--GDDQHDTVSLITNQSSLEE---ISAGRTSGTSAKRGSISFRTIDKDQIS-GTFVELSLFSPGQHSSPPGSP 379
MP RF ADA GVVTICLV+L +V GL CI+YSFYFR+RIR QG +L YFSGPWIIRI FI+ AIWW GE+IRL+LLR +L+WQ T+CKGYIVSNLGFAEPC LTLVFLL LQKTE L +WN KTAGYV+LYC PMF+LQL VI++GP NK S L KLPHYF A +N DIALCTYPLLST FLGIF ++LTTYL WLG +IL LVINK L KRVY LI S+SS + RV+ LGLSVLS+PEH FE L LAFL+LLCCAG+ +C+LVY P+ADSLAL N+QD+EAR +D +DTVSLI NQS LEE IS R S S KRGSISFRT +KD S GTFVELSLFSP + ++PPGSP
Sbjct: 1 MPLTRFAADAFGVVTICLVSLLIVLGLLCIIYSFYFRSRIRSQGCIQLSYFSGPWIIRITFIVFAIWWGFGEVIRLSLLRRA-----FHLKWQDTVCKGYIVSNLGFAEPCLFLTLVFLLRAPLQKTELGILNRKWNGKTAGYVLLYCLPMFLLQLFVILMGPHFNKDKSSLRKLPHYFMRTAASPRMENTDDIALCTYPLLSTIFLGIFAMILTTYLFWLGSRILKLVINKGLQKRVYTLIFSVSSLLPLRVLFLGLSVLSEPEHFLFEALVLLAFLALLCCAGVCICMLVYYPVADSLALGNLQDIEARRRVAEDHNDTVSLIANQSHLEESGRISLSRNSDASTKRGSISFRTFEKDGTSTGTFVELSLFSPSRDATPPGSP 380
BLAST of XM_017359486.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W9RJ41 ((Uncharacterized protein {ECO:0000313|EMBL:EXB80387.1}))
HSP 1 Score: 464.151 bits (1193), Expect = 3.286e-161
Identity = 249/385 (64.68%), Postives = 290/385 (75.32%), Query Frame = 0
Match: W9RJ41 ((Uncharacterized protein {ECO:0000313|EMBL:EXB80387.1}))
HSP 1 Score: 464.151 bits (1193), Expect = 3.286e-161
Identity = 249/385 (64.68%), Postives = 290/385 (75.32%), Query Frame = 0
Query: 1 MPQKRFDADALGVVTICLVALFVVFGLFCIVYSFYFRTRIRRQGFTRLRYFSGPWIIRIIFILLAIWWCVGEIIRLNLLRSEGRILNVNLEWQRTICKGYIVSNLGFAEPCFLLTLVFLLYGSLQKTEARTLRHRWNCKTAGYVVLYCCPMFVLQLMVIIVGPKLNKRGSYLHKLPHYFTNIVAPSMRKNGVDIALCTYPLLSTTFLGIFDIVLTTYLVWLGRQILYLVINKVLHKRVYILILSISSFVSFRVILLGLSVLSKPEHVWFELLSFLAFLSLLCCAGLGVCILVYLPIADSLALRNVQDMEARS--GDDQHDTVSLITNQSSLEE---ISAGRTSGTSAKRGSISFRTIDKDQIS-GTFVELSLFSPGQHSSPPGSP 379
MP RF ADA GV+TICLVAL ++ GL CI YSFYFR+RIR QG L YFSGPWIIRI FIL AIWW GEIIR++ LR EGR+LN NL+WQ T+CK YIVSNLGFAEPC LTLVFLL LQK E+ L WN KTA + LYC P+FVLQL +I++GP+L+K S LHK+ HYFT S K DIALCTYPL+ST GIF LT YL WLGR+IL LVINK L KRVY LI+S+SSF RV+LLG SVLS+PEH+ FE LSF AFL+LLCCAG+ +C+LVY P+ADSLAL ++ D+EAR DDQ+DT+SLI NQS LEE IS GR S TS KRGSISFRT++K+ S G FVELSLFSP + ++PPGSP
Sbjct: 1 MPLTRFAADAFGVLTICLVALLILLGLLCIAYSFYFRSRIRSQGLVLLSYFSGPWIIRITFILFAIWWGFGEIIRISWLRGEGRLLNGNLKWQETVCKCYIVSNLGFAEPCLFLTLVFLLRAPLQKMESGILSRTWNGKTAACIFLYCLPLFVLQLFLILIGPQLSKNES-LHKMQHYFT-----STAKKTNDIALCTYPLMSTILHGIFATFLTFYLFWLGRRILKLVINKGLQKRVYTLIISVSSFFPLRVLLLGFSVLSEPEHLQFEALSFSAFLALLCCAGVCICMLVYCPVADSLALGSLHDLEARRIISDDQNDTISLIANQSHLEESAAISPGRNSDTSTKRGSISFRTLEKEGSSRGNFVELSLFSPSRDATPPGSP 379
BLAST of XM_017359486.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BRW7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8545444.1}))
HSP 1 Score: 464.151 bits (1193), Expect = 4.288e-161
Identity = 259/386 (67.10%), Postives = 301/386 (77.98%), Query Frame = 0
Match: A0A5J5BRW7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8545444.1}))
HSP 1 Score: 464.151 bits (1193), Expect = 4.288e-161
Identity = 259/386 (67.10%), Postives = 301/386 (77.98%), Query Frame = 0
Query: 1 MPQKRFDADALGVVTICLVALFVVFGLFCIVYSFYFRTRIRRQGFTRLRYFSGPWIIRIIFILLAIWWCVGEIIRLNLLRSEGRILN-VNLEWQRTICKGYIVSNLGFAEPCFLLTLVFLLYGSLQKTEARTLR--HRWNCKTAGYVVLYCCPMFVLQLMVIIVGPKLNKRGSYLHKLPHYFTNIVAPSMRKNGVDIALCTYPLLSTTFLGIFDIVLTTYLVWLGRQILYLVINKVLHKRVYILILSISSFVSFRVILLGLSVLSKPEHVWFELLSFLAFLSLLCCAGLGVCILVYLPIADSLALRNVQDMEARS--GDDQHDTVSLITNQSSLEEI--SAGRTSGTSAKRGSISFRTIDKDQISGTFVELSLFSPGQHSSPPGSP 379
MP RF ADALGVVTICLVAL V+ GL CI+YSFYFRTRIR QGF +L YFSGPWIIRI FIL +IWW +GEI+RLNLLR EGR+LN +NL WQ T+CK YIVSNLGFAEPC LTLVFLL SLQKTE TL +WN KTAGYV+LYC P+FVLQL+VI++GP+ NK S + KLP YF + A S K+ ++ALCTYPLLS FLG+F VLTTYL WLGR+IL LVINK L KRVY LI S+S F RV+LLGLSVLS+PEH FE L+FLAFLSLLCCAG+ + +LVY P+ADSLAL + D+EAR ++ +DT+SLI NQS E + S GR S TS KRGSISFR ++KD+ SG FVELSLFSP QHS+PPGSP
Sbjct: 1 MPLTRFAADALGVVTICLVALLVILGLVCILYSFYFRTRIRSQGFIQLGYFSGPWIIRITFILFSIWWGLGEIVRLNLLRREGRVLNALNLRWQETVCKCYIVSNLGFAEPCLFLTLVFLLRASLQKTELGTLSLSQKWNGKTAGYVLLYCLPVFVLQLIVILIGPQFNKGESLVSKLPLYFISTAAASKTKDQDNVALCTYPLLSIIFLGLFATVLTTYLFWLGRRILNLVINKGLQKRVYTLIFSVSGFFPLRVLLLGLSVLSRPEHFLFEALAFLAFLSLLCCAGVSIFMLVYCPVADSLALWKLHDVEARRRISEEYNDTISLIANQSPEESMVCSPGRNSVTSTKRGSISFRAMEKDETSGAFVELSLFSPNQHSTPPGSP 386
BLAST of XM_017359486.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A444ZC52 ((Uncharacterized protein {ECO:0000313|EMBL:RYR11765.1}))
HSP 1 Score: 463.381 bits (1191), Expect = 7.943e-161
Identity = 240/381 (62.99%), Postives = 284/381 (74.54%), Query Frame = 0
Match: A0A444ZC52 ((Uncharacterized protein {ECO:0000313|EMBL:RYR11765.1}))
HSP 1 Score: 463.381 bits (1191), Expect = 7.943e-161
Identity = 240/381 (62.99%), Postives = 284/381 (74.54%), Query Frame = 0
Query: 8 ADALGVVTICLVALFVVFGLFCIVYSFYFRTRIRRQGFTRLRYFSGPWIIRIIFILLAIWWCVGEIIRLNLLRSEGRILNVNLEWQRTICKGYIVSNLGFAEPCFLLTLVFLLYGSLQKTEARTLRHRWNCKTAGYVVLYCCPMFVLQLMVIIVGPKLNKRGSYLHKLPHYFTNIVAPSMRKNGVDIALCTYPLLSTTFLGIFDIVLTTYLVWLGRQILYLVINKVLHKRVYILILSISSFVSFRVILLGLSVLSKPEHVWFELLSFLAFLSLLCCAGLGVCILVYLPIADSLALRNVQDMEARSGD-DQHDTVSLITNQSSLEEI-------SAGRTSGTSAKRGSISFRTIDKDQIS-GTFVELSLFSPGQHSSPPGSP 379
ADA GVVTICLVA+ ++ GL CI YS YFR+RIR+QGF +L YFSGPWIIRI FIL AIWW +GEIIRL LLR R+L+ LEW+ T+CK YIVSNLGFAEPC LTLVFLL LQK E + +WN KTAGY++LYC PMFVLQL VI+VGP+LNK KLPHYFT S + LCTYPLLST LG+F ++LT+YL WLG +IL LVINK L KRVY L+LS+S F+ RV+ LGLSVLS+PEH+ FE FLAFL+L+CCAGL +C LVY PIAD LAL N+QD+EAR + D +DT+SLI NQS LE++ S GR S S KRGSISFRT++KD S GTFVELSLFSP + ++PPGSP
Sbjct: 8 ADAFGVVTICLVAILILLGLMCIAYSIYFRSRIRQQGFFQLNYFSGPWIIRITFILFAIWWGLGEIIRLTLLR---RVLH--LEWKETVCKCYIVSNLGFAEPCLFLTLVFLLRAPLQKLETGIMSRKWNAKTAGYILLYCFPMFVLQLFVILVGPQLNKNNGSGKKLPHYFTTTAFDSSSMARDNDTLCTYPLLSTILLGLFAVILTSYLFWLGSRILKLVINKGLQKRVYTLLLSVSGFLPLRVLFLGLSVLSEPEHMKFEAFVFLAFLALVCCAGLCMCTLVYRPIADCLALGNLQDLEARRTNVDNNDTMSLIANQSHLEDVVEENSRSSPGRYSDASTKRGSISFRTLEKDVASTGTFVELSLFSPSRSATPPGSP 383
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7HIY7 | E-Value: 1.375e-180, PID: 67.36 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5951... [more] |
| A0A6P4AV61 | E-Value: 6.978e-168, PID: 64.77 | (uncharacterized protein LOC107434209 {ECO:0000313... [more] |
| A0A2I4EES7 | E-Value: 4.237e-167, PID: 63.90 | (uncharacterized protein LOC108988932 {ECO:0000313... [more] |
| A0A067L202 | E-Value: 3.606e-164, PID: 63.99 | (Uncharacterized protein {ECO:0000313|EMBL:KDP4246... [more] |
| A0A7J0ES20 | E-Value: 7.648e-164, PID: 64.14 | (Uncharacterized protein {ECO:0000313|EMBL:GFY8928... [more] |
| A0A2R6RGJ5 | E-Value: 3.812e-163, PID: 63.87 | (ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase {... [more] |
| A0A6A1V6U7 | E-Value: 2.198e-161, PID: 65.45 | (Uncharacterized protein {ECO:0000313|EMBL:KAB1208... [more] |
| W9RJ41 | E-Value: 3.286e-161, PID: 64.68 | (Uncharacterized protein {ECO:0000313|EMBL:EXB8038... [more] |
| A0A5J5BRW7 | E-Value: 4.288e-161, PID: 67.10 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8545... [more] |
| A0A444ZC52 | E-Value: 7.943e-161, PID: 62.99 | (Uncharacterized protein {ECO:0000313|EMBL:RYR1176... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |