MSSVCVSLPLPAKTPLKPININPNFKPPNFDDNLIHLANTAQIHKAMHLI
TTHQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIM
LNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESV
CMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEAD
LCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSG
DALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLS
TDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGG
FDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKL
GFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKN
LNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLK
SGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAK
HGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMY
KEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGA
CHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKG
MKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKK
LGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKN
LRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW
| Relationships |
|---|
| The polypeptide, XM_017403424.1, derives from mRNA, XM_017403424.1. |

Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A7J7I2V1 (DYW_deaminase domain-containing protein {ECO:0000259|Pfam:PF14432})
HSP 1 Score: 1217.22 bits (3148), Expect = 0.000e+0
Identity = 573/837 (68.46%), Postives = 696/837 (83.15%), Query Frame = 0
Query: 11 PAKTPLKPININPNFKPPNFDDNLIHLANTAQIHKAMH-LITTHQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSG--GSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
P+ LK +PNF+P F D LI LAN +H+A+ L QH L+PDL TYS LLKSCIRTR FDLGKL+H+ L S + D ++LNSLITLYSKSGD VTA +F+ +G+ RD+VSWSA+IS FAHNGM+ +S+ F DM++ GE PNQFC + V+ AC + N +G IFGFVIKTGYFE+D+C+GCALID+F KG D+ A+ VFD M ERNAVTWTLMITRY+Q+G DA+ELF+ MV +GF+ DRFTFSS I+ CAEL L +G+QLHSLVVKS L+ DVCVGCSL+DMY K GS+++SR VF+RM N+MSWTA ITGYV SGG D+EAIE+Y +MI+ +V+PN TFSSLLKACGNL+D AGEQIY+NAVK G +SVNCVGNSL+SMYARSG +EDA+KAF+ILFEKNL+SYN +VD YAKNL+S+EAF++FN+IEDT I VDAFT+ASLLSGAAS+GAVGKGEQ+HARL+K+GF+SNQ I N+LISMYSKCGNI AA QVF ++ED VISWTSI+ G AKHG A RA +MF++ML G+KPN+VTY+AVLSACSH G+++EGWKHFN MYKEH I+P+MEHYAC+VDLLGR G+LE A+QFI SMP+ AD LVWRTLLGAC VH NTE+GK+AA+MI+KQ+P+DPAA++LLSNLYAS QWD V IRK MK+RN+VKE GCSWIET N V+ F+VGDTSHPQAR+IY +LDQL++KIK+LGY+P+TNFVLH+V E+QKEQYLFQHSEKIAVAFGLIST+K KPIR+FKNLR+CGDCHTAMKYIS+ATGR+IV+RDSNRFHHF G+CSCN+YW
Sbjct: 30 PSTQTLK----HPNFEP--FKDRLIRLANQGHLHQAISTLDLMTQHGLSPDLVTYSVLLKSCIRTRQFDLGKLVHSKLSHS--LLDPDSVLLNSLITLYSKSGDWVTANSIFNGMGEHRDMVSWSAMISCFAHNGMQSQSISTFFDMLEFGEYPNQFCLAAVMQACSNSKNAWIGKIIFGFVIKTGYFESDVCIGCALIDMFVKGCGDLGSAKKVFDIMRERNAVTWTLMITRYSQLGQPKDAVELFIDMVVSGFIPDRFTFSSTINACAELELLSLGQQLHSLVVKSRLTLDVCVGCSLVDMYVKCAVDGSMVNSRKVFDRMPNHNVMSWTATITGYVQSGGHDKEAIELYCRMIDGQVVPNHFTFSSLLKACGNLSDPAAGEQIYTNAVKHGLASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNTIVDGYAKNLDSNEAFELFNEIEDTGIEVDAFTFASLLSGAASIGAVGKGEQIHARLMKAGFKSNQCISNSLISMYSKCGNIEAALQVFSEIEDHTVISWTSIVMGLAKHGFATRALKMFQEMLKTGIKPNEVTYIAVLSACSHVGMINEGWKHFNAMYKEHRISPRMEHYACMVDLLGRSGFLEEAIQFINSMPFMADALVWRTLLGACQVHGNTEVGKHAAKMIIKQEPNDPAAYILLSNLYASSGQWDEVVRIRKNMKERNLVKEAGCSWIETENRVYNFHVGDTSHPQAREIYEELDQLSLKIKELGYVPNTNFVLHDVEEKQKEQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAMKYISIATGREIVLRDSNRFHHFKGGACSCNDYW 858
Match: A0A7J0DCT2 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFS32177.1}))
HSP 1 Score: 1211.44 bits (3133), Expect = 0.000e+0
Identity = 573/858 (66.78%), Postives = 702/858 (81.82%), Query Frame = 0
Query: 6 VSLPLPAKTPLKPININP-------------NFKPPNFD---DNLIHLANTAQIHKAMH-LITTHQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAK--SGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
+SL LP+ T P++ P K PNF+ D LI LAN +H+A+ L Q LTPDL TYS LLKSCIRTR F+LGKL+H L S L D +++NSLI+LYSKSGD VTA +F +G+RRDLVSWSA+IS FAH+GME +V F+DM++ GE PNQFCF+ VI AC + N G+ +FGFVIKTGYFE+D+CVGCAL+DLFAKG+ D+ A VFD+MPE+N+V+WTL ITRY+Q+G +A+ELF+ MV +G++ DRFTFSS+IS CAEL L +G+QLHS VVK L+ DVCVGCSL+DMYAK + GS+++SR VF+ + + N+MSWT++ITGYV GG D+EAIE+Y +MIE RV PN TFSSLLKACGNL+D AGEQIY++ VKLG +SVNCVGNS +SMYARSG +EDA+KAF+ILFEKNL+SYNI+VD YAKNL S EAF+IFNQIEDT GVDAFT+ASLLSGAAS+GAV KGEQ+HARLLK+GFESN I NALISMYS+CGNI AA QVF +MED NV+SWTSIITGFAKHG A +A +MF++ML G+KPN+VTY+AVLSACS+ G+++EGW HFN+MYK+HGI P+MEHYAC+VDLLGR GYLE AV+FI SMP+TAD LVWRTLLGAC VH N E+GK+A+EMI++Q+P+DPAA++LLSNLYAS QW+ V +IRK MKQ+++VKE GCSWIET N VHKF+VG+TSHPQAR+IY +LDQLA+KIK++GY+PDTN VLH+V EEQKEQYLFQHSEKIAVAFGLIST+K KPIR+FKNLR+CGDCH AMKYIS+ATGR+IV+RDSNRFHHF +G+CSCN+YW
Sbjct: 2 ISLSLPSPTKSVPLSFKPRNPSRQKTASSIQTVKHPNFELFKDRLIRLANVGHLHQAISALDVMTQQGLTPDLITYSVLLKSCIRTRQFNLGKLVHTKLSESQLELDS--VLINSLISLYSKSGDWVTANDIFQDMGERRDLVSWSAMISCFAHSGMESRAVSTFIDMLEFGECPNQFCFAAVIQACSNSENARTGMVVFGFVIKTGYFESDVCVGCALVDLFAKGMGDLNSAHKVFDKMPEKNSVSWTLTITRYSQLGQPQEAMELFVDMVVSGYMPDRFTFSSIISACAELEQLSLGQQLHSQVVKYRLAFDVCVGCSLVDMYAKCAADGSMVNSRKVFDLLPDHNVMSWTSVITGYVQGGGHDKEAIELYCRMIEDRVSPNHFTFSSLLKACGNLSDPTAGEQIYTHVVKLGLASVNCVGNSHISMYARSGRMEDARKAFDILFEKNLVSYNIIVDGYAKNLYSSEAFEIFNQIEDTGSGVDAFTFASLLSGAASIGAVDKGEQIHARLLKAGFESNLSISNALISMYSRCGNIEAAIQVFTEMEDWNVVSWTSIITGFAKHGFATKALDMFQEMLETGIKPNEVTYIAVLSACSYVGMINEGWMHFNSMYKDHGIRPRMEHYACMVDLLGRSGYLEEAVKFINSMPFTADALVWRTLLGACGVHGNIELGKHASEMIIEQEPNDPAAYILLSNLYASAGQWEDVMKIRKCMKQKSLVKEAGCSWIETENKVHKFHVGETSHPQAREIYEELDQLALKIKEMGYVPDTNVVLHDVEEEQKEQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHNAMKYISMATGREIVLRDSNRFHHFNNGACSCNDYW 857
Match: A0A2R6Q961 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSS04441.1}))
HSP 1 Score: 1210.67 bits (3131), Expect = 0.000e+0
Identity = 576/862 (66.82%), Postives = 704/862 (81.67%), Query Frame = 0
Query: 6 VSLPLPAKTPLKPININPNFKP-----------------PNFD---DNLIHLANTAQIHKAMH-LITTHQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAK--SGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
+SL LP+ T P P+FKP PNF+ D LI LAN +H+A+ L Q LTPDL TYS LLKSCIRTR F+LGKL+H L S L D +++NSLI+LYSKSGD VTA +F +G+RRDLVSWSA+IS FAH+GME +V F+DM++ GE PNQFCF+ VI AC + N G+ +FGFV+KTGYFE+D+CVGCAL+DLFAKG+ D+ A VFD+MPE+N+V+WTLMITRY+Q+G +A+ELF+ MV +G++ DRFTFSS+IS CAEL L +G+QLHS VVK L+ DVCVGCSL+DMYAK + GS+++SR VF+ + + N+MSWT++ITGYV GG D+EAIE+Y +MIE RV PN TFSSLLKACGNL+D AGEQIY++AVKLG +SVNCVGNS +SMYARSG +EDA+KAF+ILFEKNL+SYNI+VD YAKNL S EAF+IFNQIEDT GVDAFT+ASLLSGAAS+GAV KGEQ+HARLLK+GFESN I NALISMYS+CGNI AA QVF +MED NV+SWTSIITGFAKHG A +A +MF++ML G+KPN+VTY+AVLSACS+ G+++EGW HFN+MYK+HGI P+MEHYAC+VDLLGR GYLE AV+FI SMP+TAD LVWRTLLGAC VH N E+GK+A+EMI++Q+P+DPAA++LLSNLYAS QW+ V +IRK MKQ+++VKE GCSWIET N VHKF+VG+TSHPQAR+IY +LDQLA+KIK++GY+PDTN VLH+V EEQKEQYLFQHSEKIAVAFGLIST+K KPIR+FKNLR+CGDCH AMKYIS+AT R+IV+RDSNRFHHF DG+CSCN+YW
Sbjct: 2 ISLSLPSPTKSVP----PSFKPRNPSRQKTTSSIKTVKHPNFELFKDRLIRLANVGHLHQAISALDLMTQQGLTPDLITYSVLLKSCIRTRQFNLGKLVHTKLSESQLELDS--VLINSLISLYSKSGDWVTANDIFQDMGERRDLVSWSAMISCFAHSGMESRAVSTFIDMLEFGECPNQFCFAAVIQACSNSENARTGMVVFGFVMKTGYFESDVCVGCALVDLFAKGMGDLNSAHKVFDKMPEKNSVSWTLMITRYSQLGQPKEAMELFVDMVVSGYMPDRFTFSSIISACAELEQLSLGQQLHSQVVKYRLAFDVCVGCSLVDMYAKCATDGSMVNSRKVFDLLPDHNVMSWTSVITGYVQGGGHDKEAIELYCRMIEDRVSPNHFTFSSLLKACGNLSDPTAGEQIYTHAVKLGLASVNCVGNSHISMYARSGRMEDARKAFDILFEKNLVSYNIIVDGYAKNLYSSEAFEIFNQIEDTGSGVDAFTFASLLSGAASIGAVDKGEQIHARLLKAGFESNLSISNALISMYSRCGNIEAAIQVFTEMEDWNVVSWTSIITGFAKHGFATKALDMFQEMLETGIKPNEVTYIAVLSACSYVGMINEGWMHFNSMYKDHGIRPRMEHYACMVDLLGRSGYLEEAVKFINSMPFTADALVWRTLLGACGVHGNIELGKHASEMIIEQEPNDPAAYILLSNLYASAGQWEDVMKIRKCMKQKSLVKEAGCSWIETENKVHKFHVGETSHPQAREIYKELDQLALKIKEMGYVPDTNVVLHDVEEEQKEQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHNAMKYISMATEREIVLRDSNRFHHFNDGACSCNDYW 857
Match: A0A6I9SZW0 ((pentatricopeptide repeat-containing protein At3g49170, chloroplastic {ECO:0000313|RefSeq:XP_011076006.1, ECO:0000313|RefSeq:XP_011076007.1}))
HSP 1 Score: 1177.54 bits (3045), Expect = 0.000e+0
Identity = 558/852 (65.49%), Postives = 687/852 (80.63%), Query Frame = 0
Query: 4 VCVSLPLPAKTPLKPININ-PNFKPP------NFDDNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMI-ESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
+ +SLP P LK N + +PP D LI A+ ++ +A+ ++ + LTPDL TYS LLKSCIRTRNF+LG+L+H+ L +S L D I+LNSLI+LY K GD A+ +F S+G+ RDLVSWSA+IS +AHNG+ E++ +F +M++ GE PN+FCFS I AC SR +GL IFG+++KTG+FE+D+CVGCALIDLF KG D++ A VFD+MP++NAV+WTLMITR AQMG DA+ LF+ MV +GFV DRFTFSS +S C+ELG L +G+QLH VVK+GLS DVCVGCSL+DMYAKS GS+ DSR VF+R+ E N+MSWTA+ITGYV +GG D EAI +Y +MI E RV PN TF+ LLKACGNL + GEQ+Y +A+KLG ++VNCVGNSL+SMYA+S +EDAQKAFE LF+KNL+SYN LV+ Y +NL++DEAF IFNQIE+ +G+DAFT+ASLLSGAAS GAVG+GEQ+HARLLK GFESN + NALISMY++CGNI A YQVF +MEDRNVISWTSIITGFAKHG AKRA E+F+QML G++PN+VTY+AVLSACSHAGL+DEGW+HF+ MYKEHGI P+MEHYAC+VD+LGR G+L+ AV+FI SMP+ A+ LVWRTLLGAC VH N ++GK+ AEMIL+QDP+DPAAHVLLSNLYAS SQW+ IRKGMK RN+VKE GCSWIE N VHKFYVGDT HP+AR+IY +LD LA+KIK++GY+PDTNFVLH V EEQKEQYLFQHSEKIA+A+GLIST+KPKPIRIFKNLR+CGDCH AMKYIS+ATGR+IV+RDSNRFHH DG C+CN+YW
Sbjct: 2 ISLSLPSPTSPSLKVNRHNVTSLRPPRSITFQTLKDRLIRQADAGRVQEAISILDLMSRTNLTPDLTTYSVLLKSCIRTRNFELGQLVHSKLTASRLGLD--AIVLNSLISLYWKCGDWRKAEEIFSSMGEMRDLVSWSAMISCYAHNGLNMEAIFLFCEMLEFGEWPNEFCFSAAIRACSSREYARIGLVIFGYLMKTGFFESDVCVGCALIDLFVKGFGDLESANKVFDKMPDKNAVSWTLMITRLAQMGSPRDAIGLFMDMVVSGFVPDRFTFSSGLSACSELGALRIGRQLHGWVVKNGLSLDVCVGCSLVDMYAKSTVDGSIDDSRKVFDRIPEHNVMSWTAIITGYVQNGGRDDEAIALYCRMITEGRVKPNHFTFAGLLKACGNLFNPALGEQVYGHALKLGLATVNCVGNSLISMYAKSDRMEDAQKAFEFLFDKNLVSYNALVNGYTRNLDADEAFQIFNQIENFSVGLDAFTFASLLSGAASTGAVGRGEQIHARLLKVGFESNLCVCNALISMYTRCGNIEAGYQVFSEMEDRNVISWTSIITGFAKHGFAKRALELFQQMLDCGIEPNEVTYIAVLSACSHAGLIDEGWRHFDMMYKEHGIRPRMEHYACMVDILGRAGFLDKAVEFINSMPFIANALVWRTLLGACRVHGNMKLGKHVAEMILQQDPNDPAAHVLLSNLYASMSQWEDAARIRKGMKDRNLVKEAGCSWIEIANKVHKFYVGDTKHPEAREIYEELDHLAIKIKEMGYVPDTNFVLHEVEEEQKEQYLFQHSEKIALAYGLISTSKPKPIRIFKNLRVCGDCHAAMKYISVATGREIVLRDSNRFHHIKDGKCTCNDYW 851
Match: A0A1U7V352 ((pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X1 {ECO:0000313|RefSeq:XP_009760813.1}))
HSP 1 Score: 1170.22 bits (3026), Expect = 0.000e+0
Identity = 559/853 (65.53%), Postives = 694/853 (81.36%), Query Frame = 0
Query: 4 VCVSLPLPAK-TPLKPINI--------NPNFKPPNFDDNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
+ +SLP PAK P P N+ NPNF+ D LI AN + +A+ + Q LTPDL +Y+ LLKSCIRTRNF LG+LLH+ L +S L D I+LNSLI+LY+K GD TAK +F+++G++RDLVSWSA+IS FAH GME E+V F DM++ GE PNQFCFS VI ACCS +GL IFGFV+KTGYFE+D+CVGCALIDLFAKG D++ A+ VFDRMPERN VTWTLMITR++Q+G DA+ LFL MV GFV DRFTFS V+S CA++G G+QLH VVKS LS+DVCVGCSL+DMYAK GS+ DSR VF++M++ N+MSWTA+ITGYV SG +D EAI++Y +MIE V PN TFSSLLKACGNL++ GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+KNL+S EAF++F+QI D+E+G+DAFT+ASLLSGAAS+GAVGKGEQ+HAR+LK+G SNQ + NALISMYS+CGNI AA QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML AG+KPN++TY+AVLSACSH GL++EGWK+F++M +H I P+MEHYAC+VDLL R G LE AVQFI+S+P D LVWRTLLGAC V+ N ++GKYAAEMIL+Q+P+DPAAHVLLSNLYAS+ +W+ V +IRK MK++ +VKE GCSWIE N+VH+FYVGDT+HP+A++IY +LD++A+KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I+VRDSNRFHH DG CSCN+YW
Sbjct: 2 ITLSLPSPAKLIPPSPKNLTSLQIHRRNPNFEA--LKDRLIRQANVGNLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNNSSLEPD--TIVLNSLISLYAKMGDWETAKMIFENMGEKRDLVSWSAMISCFAHCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGEFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQMGLSSFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSTEAFELFSQI-DSEVGIDAFTFASLLSGAASIGAVGKGEQIHARVLKAGIHSNQSVCNALISMYSRCGNIEAASQVFERMEDRNVISWTSIITGFAKHGFAYRALELFNQMLGAGIKPNEITYIAVLSACSHVGLVEEGWKYFDSMSSDHRITPRMEHYACMVDLLSRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVYGNLQLGKYAAEMILEQEPNDPAAHVLLSNLYASRGEWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHRFYVGDTNHPRAKEIYEKLDKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTSKSKPIRIFKNLRVCGDCHNAMKFISVAEGREIIVRDSNRFHHIKDGLCSCNDYW 849
Match: A0A1S3YXQ0 ((pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like isoform X1 {ECO:0000313|RefSeq:XP_016457116.1}))
HSP 1 Score: 1170.22 bits (3026), Expect = 0.000e+0
Identity = 561/853 (65.77%), Postives = 694/853 (81.36%), Query Frame = 0
Query: 4 VCVSLPLPAK-TPLKPINI--------NPNFKPPNFDDNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
+ +SLP PAK P P N+ NPNF+ D LI AN + +A+ + Q LTPDL +Y+ LLKSCIRTRNF LG+LLH+ L +S L D I+LNSLI+LY+K GD TAK +F+++G++RDLVSWSA+IS FAH GME E+V F DM++ GE PNQFCFS VI ACCS +GL IFGFV+KTGYFE+D+CVGCALIDLFAKG D++ A+ VFDRMPERN VTWTLMITR++Q+G DA+ LFL MV GFV DRFTFS V+S CA+LG G+QLH VVKS LS+DVCVGCSL+DMYAK GS+ DSR VF++M++ N+MSWTA+ITGYV SG +D EAI++Y +MIE V PN TFSSLLKACGNL++ GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+KNL+S EAF++F+QI D+E+G+DAFT+ASLLSGAAS+GAVGKGEQ+HAR+LK+G SNQ + NALISMYS+CGNI AA QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML AG+KPN++TY+AVLSACSH GL++EGWK+F++M +H I P+MEHYAC+VDLL R G LE AVQFI+S+P D LVWRTLLGAC V+ N ++GKYAAEMIL+Q+PSDPAAHVLLSNLYAS+ +W+ V +IRK MK++ +VKE GCSWIE N+VH+FYVGDT+HP+A++IY +LD++A+KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I+VRDSNRFHH DG CSCN+YW
Sbjct: 2 ITLSLPSPAKLIPPSPKNLTSLQIHRRNPNFEA--LKDRLIRQANVGNLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNNSSLEPD--TIVLNSLISLYAKMGDWETAKMIFENMGEKRDLVSWSAMISCFAHCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGVFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQLGLSLFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSTEAFELFSQI-DSEVGIDAFTFASLLSGAASIGAVGKGEQIHARVLKAGIHSNQSVCNALISMYSRCGNIEAASQVFERMEDRNVISWTSIITGFAKHGFAYRALELFNQMLGAGIKPNEITYIAVLSACSHVGLVEEGWKYFDSMSSDHRITPRMEHYACMVDLLSRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVYGNLQLGKYAAEMILEQEPSDPAAHVLLSNLYASRGEWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHRFYVGDTNHPRAKEIYEKLDKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTSKSKPIRIFKNLRVCGDCHNAMKFISVAEGREIIVRDSNRFHHIKDGLCSCNDYW 849
Match: M1BPQ1 ((Pentatricopeptide repeat-containing protein, chloroplastic {ECO:0000313|EnsemblPlants:PGSC0003DMT400050032}))
HSP 1 Score: 1170.22 bits (3026), Expect = 0.000e+0
Identity = 561/851 (65.92%), Postives = 690/851 (81.08%), Query Frame = 0
Query: 4 VCVSLPLPAK-TPLKPININ---PNFKPPNFD---DNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
+ +SLP PAK P P + N + P+F+ D LI AN + +A+ + Q TPDL +Y+ LLKSCIRTRNF G+LLH+ L S L D I+LNSLI+LYSK G TA+ +F+S+G++RDLVSWSA+IS +AH GME ESV F DM++ GE PNQFCFS VI ACCS VGL IFGFVIKTGYFE+D+CVGCALIDLFAKG SD++ A+ VFDRMPERN VTWTLMITR++Q+G S DA+ LFL MV GFV DRFTFS V+S CAE G +G+QLH V+KS LS DVCVGCSL+DMYAKS GS+ DSR VF+RM++ N+MSWTA+ITGYV SG +D EAI++Y +MI++ V PN TFSSLLKACGNL++ GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+K+L+S EAF++F+ + D+E+ VD FT+ASLLSGAASVGAVGKGEQ+HAR+LK+G +SNQ + NALISMYS+CGNI AA+QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML G+KPN+VTY+AVLSACSH GL+DEGWK+F++M K HGI P+MEHYAC+VDLLGR G LE AVQFI+S+P D LVWRTLLGAC VH N ++GKYA+EMIL+Q+P+DPAAHVLLSNLYAS+ QW+ V +IRK MK++ +VKE GCSWIE N+VHKFYVGDT HP+A++IY +L ++A+KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST K KPIRIFKNLR+CGDCH AMK+IS+A GR+I++RDSNRFHH DG CSCN+YW
Sbjct: 2 ITLSLPSPAKFIPPSPKSKNLKSRRIRNPDFEALKDTLIRQANVGNLKQAISTLDHISQMGFTPDLTSYTVLLKSCIRTRNFQFGQLLHSKLNDSPLEPD--TILLNSLISLYSKMGSWETAEKIFESMGEKRDLVSWSAMISCYAHCGMELESVFTFFDMVEFGEYPNQFCFSAVIQACCSAELGWVGLAIFGFVIKTGYFESDICVGCALIDLFAKGFSDLRSAKKVFDRMPERNLVTWTLMITRFSQLGASKDAVRLFLEMVSEGFVPDRFTFSGVLSACAEPGLSLLGRQLHGGVIKSRLSADVCVGCSLVDMYAKSTMDGSMDDSRKVFDRMADHNVMSWTAIITGYVQSGHYDMEAIKLYCRMIDNPVKPNHFTFSSLLKACGNLSNPAIGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKSLDSAEAFELFSHL-DSEVEVDTFTFASLLSGAASVGAVGKGEQIHARVLKAGIQSNQSVSNALISMYSRCGNIEAAFQVFEGMEDRNVISWTSIITGFAKHGFAHRAVELFNQMLEDGIKPNEVTYIAVLSACSHVGLVDEGWKYFDSMSKNHGITPRMEHYACMVDLLGRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVHGNLQLGKYASEMILEQEPNDPAAHVLLSNLYASRRQWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHKFYVGDTKHPKAKEIYEKLGKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTCKQKPIRIFKNLRVCGDCHNAMKFISVAEGREIIIRDSNRFHHIKDGLCSCNDYW 849
Match: A0A1S3YZ42 ((pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like isoform X2 {ECO:0000313|RefSeq:XP_016457117.1}))
HSP 1 Score: 1168.3 bits (3021), Expect = 0.000e+0
Identity = 560/853 (65.65%), Postives = 693/853 (81.24%), Query Frame = 0
Query: 4 VCVSLPLPAK-TPLKPINI--------NPNFKPPNFDDNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
+ +SLP PAK P P N+ NPNF+ D LI AN + +A+ + Q LTPDL +Y+ LLKSCIRTRNF LG+LLH+ L +S L D I+LNSLI+LY+K GD TAK +F+++G++RDLVSWSA+IS FAH GME E+V F DM++ GE PNQFCFS VI ACCS +GL IFGFV+KTGYFE+D+CVGCALIDLFAKG D++ A+ VFDRMPERN VTWTLMITR++Q+G DA+ LFL MV GFV DRFTFS V+S CA+LG G+QLH VVKS LS+DVCVGCSL+DMYAK GS+ DSR VF++M++ N+MSWTA+ITGYV SG +D EAI++Y +MIE V PN TFSSLLKACGNL++ GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+KNL+S EAF++F+QI D+E+G+DAFT+ASLLSGAAS+GAVGKGEQ+HAR+LK+G SNQ + NALISMYS+CGNI AA QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML AG+KPN++TY+AVLSACSH GL++EGWK+F++M +H I P+MEHYAC+VDLL R G LE AVQFI+S+P D LVWRTLLGAC V+ N ++GKYAAEMIL+Q+PSDPAAHVLLSNLYAS+ +W+ V +IRK MK++ +VKE GCSWIE N+VH+FYVGDT+HP+A++IY +LD++A+KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I+VRDSNRFHH D CSCN+YW
Sbjct: 2 ITLSLPSPAKLIPPSPKNLTSLQIHRRNPNFEA--LKDRLIRQANVGNLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNNSSLEPD--TIVLNSLISLYAKMGDWETAKMIFENMGEKRDLVSWSAMISCFAHCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGVFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQLGLSLFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSTEAFELFSQI-DSEVGIDAFTFASLLSGAASIGAVGKGEQIHARVLKAGIHSNQSVCNALISMYSRCGNIEAASQVFERMEDRNVISWTSIITGFAKHGFAYRALELFNQMLGAGIKPNEITYIAVLSACSHVGLVEEGWKYFDSMSSDHRITPRMEHYACMVDLLSRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVYGNLQLGKYAAEMILEQEPSDPAAHVLLSNLYASRGEWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHRFYVGDTNHPRAKEIYEKLDKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTSKSKPIRIFKNLRVCGDCHNAMKFISVAEGREIIVRDSNRFHHITDELCSCNDYW 849
Match: A0A1U7VG40 ((pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X2 {ECO:0000313|RefSeq:XP_009760814.1}) (pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X3 {ECO:0000313|RefSeq:XP_009760815.1}))
HSP 1 Score: 1167.91 bits (3020), Expect = 0.000e+0
Identity = 558/853 (65.42%), Postives = 693/853 (81.24%), Query Frame = 0
Query: 4 VCVSLPLPAK-TPLKPINI--------NPNFKPPNFDDNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
+ +SLP PAK P P N+ NPNF+ D LI AN + +A+ + Q LTPDL +Y+ LLKSCIRTRNF LG+LLH+ L +S L D I+LNSLI+LY+K GD TAK +F+++G++RDLVSWSA+IS FAH GME E+V F DM++ GE PNQFCFS VI ACCS +GL IFGFV+KTGYFE+D+CVGCALIDLFAKG D++ A+ VFDRMPERN VTWTLMITR++Q+G DA+ LFL MV GFV DRFTFS V+S CA++G G+QLH VVKS LS+DVCVGCSL+DMYAK GS+ DSR VF++M++ N+MSWTA+ITGYV SG +D EAI++Y +MIE V PN TFSSLLKACGNL++ GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+KNL+S EAF++F+QI D+E+G+DAFT+ASLLSGAAS+GAVGKGEQ+HAR+LK+G SNQ + NALISMYS+CGNI AA QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML AG+KPN++TY+AVLSACSH GL++EGWK+F++M +H I P+MEHYAC+VDLL R G LE AVQFI+S+P D LVWRTLLGAC V+ N ++GKYAAEMIL+Q+P+DPAAHVLLSNLYAS+ +W+ V +IRK MK++ +VKE GCSWIE N+VH+FYVGDT+HP+A++IY +LD++A+KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I+VRDSNRFHH D CSCN+YW
Sbjct: 2 ITLSLPSPAKLIPPSPKNLTSLQIHRRNPNFEA--LKDRLIRQANVGNLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNNSSLEPD--TIVLNSLISLYAKMGDWETAKMIFENMGEKRDLVSWSAMISCFAHCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGEFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQMGLSSFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSTEAFELFSQI-DSEVGIDAFTFASLLSGAASIGAVGKGEQIHARVLKAGIHSNQSVCNALISMYSRCGNIEAASQVFERMEDRNVISWTSIITGFAKHGFAYRALELFNQMLGAGIKPNEITYIAVLSACSHVGLVEEGWKYFDSMSSDHRITPRMEHYACMVDLLSRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVYGNLQLGKYAAEMILEQEPNDPAAHVLLSNLYASRGEWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHRFYVGDTNHPRAKEIYEKLDKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTSKSKPIRIFKNLRVCGDCHNAMKFISVAEGREIIVRDSNRFHHITDELCSCNDYW 849
Match: A0A6N2C1T5 (DYW_deaminase domain-containing protein {ECO:0000259|Pfam:PF14432})
HSP 1 Score: 1165.21 bits (3013), Expect = 0.000e+0
Identity = 560/848 (66.04%), Postives = 688/848 (81.13%), Query Frame = 0
Query: 4 VCVSLPLPAK-TPLKPINI---NPNFKPPNFDDNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
+ +SLP PAK TP P + NP+F+ D LI AN + +A+ + Q TPDL +Y+ LLKSCIRTRNF +G+LLH+ L S L D I+LNSLI+L+SK G TA+ +F+S+G++RDLVSWSA+IS +AH GME ESV F DM++ GE PNQFCFS VI ACCS VGL IFGF IKTGYFE+D+CVGCALIDLFAKG SD++ A+ VFDRMPERN VTWTLMITR++Q+G S DA+ LFL MV GFV DRFTFS V+S CAE G +G+QLH V+KS LS DVCVGCSL+DMYAKS GS+ DSR VF+RM++ N+MSWTA+ITGYV SG +D EAI++Y +MI+ V PN TFS LLKACGNL+D GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL SYNI+VD +K+L+S EAF++F+ I D+E+GVDAFT+ASLLSGAASVGAVGKGEQ+H+R+LK+G +SNQ + NALISMYS+CGNI AA+QVF+ MEDRNVISWTSIITGFAKHG A RA E F QML G+KPN+VTY+AVLSACSH GL+DEGWK+F++M +HGI P+MEHYAC+VDLLGR G LE AVQFI+S+P D LVWRTLLGAC VH N ++GKYA+EMIL+Q+P+DPAAHVLLSNLYAS+ QW+ V +IRK MK++ +VKE GCSWIE N+VHKFYVGDT HP+A++IY +LD++ +KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I++RDSNRFHH DG CSCN+YW
Sbjct: 2 ITLSLPSPAKFTPPSPKSRRIRNPDFEA--LKDTLIRQANVGNLKQAISTLDHISQMGFTPDLTSYTVLLKSCIRTRNFQIGQLLHSKLNDSPLQPD--TIVLNSLISLHSKMGSWETAEKIFESMGEKRDLVSWSAMISCYAHCGMELESVFTFFDMVEFGEYPNQFCFSAVIQACCSAKLGWVGLAIFGFAIKTGYFESDVCVGCALIDLFAKGFSDLRSAKKVFDRMPERNLVTWTLMITRFSQLGASKDAVRLFLEMVSEGFVPDRFTFSGVLSACAEPGLSLLGRQLHGGVIKSRLSADVCVGCSLVDMYAKSTMDGSMDDSRKVFDRMADHNVMSWTAIITGYVQSGHYDMEAIKLYCRMIDGLVKPNHFTFSGLLKACGNLSDPAIGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLASYNIIVDECSKSLDSAEAFELFSHI-DSEVGVDAFTFASLLSGAASVGAVGKGEQIHSRVLKAGTQSNQSVSNALISMYSRCGNIEAAFQVFEGMEDRNVISWTSIITGFAKHGFAHRAVEFFNQMLEDGIKPNEVTYIAVLSACSHVGLVDEGWKYFDSMSIDHGITPRMEHYACMVDLLGRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVHGNLQLGKYASEMILEQEPNDPAAHVLLSNLYASRGQWEEVAKIRKDMKEKRMVKEAGCSWIEAENSVHKFYVGDTKHPKAKEIYEKLDKVVLKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTSKQKPIRIFKNLRVCGDCHNAMKFISVAEGREIIIRDSNRFHHIKDGLCSCNDYW 844
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7I2V1 | E-Value: 0.000e+0, PID: 68.46 | DYW_deaminase domain-containing protein {ECO:00002... [more] |
| A0A7J0DCT2 | E-Value: 0.000e+0, PID: 66.78 | (Tetratricopeptide repeat (TPR)-like superfamily p... [more] |
| A0A2R6Q961 | E-Value: 0.000e+0, PID: 66.82 | (Pentatricopeptide repeat-containing protein {ECO:... [more] |
| A0A6I9SZW0 | E-Value: 0.000e+0, PID: 65.49 | (pentatricopeptide repeat-containing protein At3g4... [more] |
| A0A1U7V352 | E-Value: 0.000e+0, PID: 65.53 | (pentatricopeptide repeat-containing protein At3g4... [more] |
| A0A1S3YXQ0 | E-Value: 0.000e+0, PID: 65.77 | (pentatricopeptide repeat-containing protein At3g4... [more] |
| M1BPQ1 | E-Value: 0.000e+0, PID: 65.92 | (Pentatricopeptide repeat-containing protein, chlo... [more] |
| A0A1S3YZ42 | E-Value: 0.000e+0, PID: 65.65 | (pentatricopeptide repeat-containing protein At3g4... [more] |
| A0A1U7VG40 | E-Value: 0.000e+0, PID: 65.42 | (pentatricopeptide repeat-containing protein At3g4... [more] |
| A0A6N2C1T5 | E-Value: 0.000e+0, PID: 66.04 | DYW_deaminase domain-containing protein {ECO:00002... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |
