XM_017403426.1

Resource Type: 
Polypeptide
Name: 
XM_017403426.1
Identifier: 
XM_017403426.1-protein
Sequence: 
MSSVCVSLPLPAKTPLKPININPNFKPPNFDDNLIHLANTAQIHKAMHLI
TTHQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIM
LNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESV
CMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEAD
LCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSG
DALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLS
TDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGG
FDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKL
GFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKN
LNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLK
SGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAK
HGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMY
KEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGA
CHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKG
MKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKK
LGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKN
LRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW
Sequence Length: 
844
Sequence Checksum: 
7877b1da283de082d93dffe3717d921a
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017403426.1, derives from mRNA, XM_017403426.1.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017403426.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017403426.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I2V1 (DYW_deaminase domain-containing protein {ECO:0000259|Pfam:PF14432})

HSP 1 Score: 1217.22 bits (3148), Expect = 0.000e+0
Identity = 573/837 (68.46%), Postives = 696/837 (83.15%), Query Frame = 0
 
Query:   11 PAKTPLKPININPNFKPPNFDDNLIHLANTAQIHKAMH-LITTHQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSG--GSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
            P+   LK    +PNF+P  F D LI LAN   +H+A+  L    QH L+PDL TYS LLKSCIRTR FDLGKL+H+ L  S  + D   ++LNSLITLYSKSGD VTA  +F+ +G+ RD+VSWSA+IS FAHNGM+ +S+  F DM++ GE PNQFC + V+ AC +  N  +G  IFGFVIKTGYFE+D+C+GCALID+F KG  D+  A+ VFD M ERNAVTWTLMITRY+Q+G   DA+ELF+ MV +GF+ DRFTFSS I+ CAEL  L +G+QLHSLVVKS L+ DVCVGCSL+DMY K    GS+++SR VF+RM   N+MSWTA ITGYV SGG D+EAIE+Y +MI+ +V+PN  TFSSLLKACGNL+D  AGEQIY+NAVK G +SVNCVGNSL+SMYARSG +EDA+KAF+ILFEKNL+SYN +VD YAKNL+S+EAF++FN+IEDT I VDAFT+ASLLSGAAS+GAVGKGEQ+HARL+K+GF+SNQ I N+LISMYSKCGNI AA QVF ++ED  VISWTSI+ G AKHG A RA +MF++ML  G+KPN+VTY+AVLSACSH G+++EGWKHFN MYKEH I+P+MEHYAC+VDLLGR G+LE A+QFI SMP+ AD LVWRTLLGAC VH NTE+GK+AA+MI+KQ+P+DPAA++LLSNLYAS  QWD V  IRK MK+RN+VKE GCSWIET N V+ F+VGDTSHPQAR+IY +LDQL++KIK+LGY+P+TNFVLH+V E+QKEQYLFQHSEKIAVAFGLIST+K KPIR+FKNLR+CGDCHTAMKYIS+ATGR+IV+RDSNRFHHF  G+CSCN+YW
Sbjct:   30 PSTQTLK----HPNFEP--FKDRLIRLANQGHLHQAISTLDLMTQHGLSPDLVTYSVLLKSCIRTRQFDLGKLVHSKLSHS--LLDPDSVLLNSLITLYSKSGDWVTANSIFNGMGEHRDMVSWSAMISCFAHNGMQSQSISTFFDMLEFGEYPNQFCLAAVMQACSNSKNAWIGKIIFGFVIKTGYFESDVCIGCALIDMFVKGCGDLGSAKKVFDIMRERNAVTWTLMITRYSQLGQPKDAVELFIDMVVSGFIPDRFTFSSTINACAELELLSLGQQLHSLVVKSRLTLDVCVGCSLVDMYVKCAVDGSMVNSRKVFDRMPNHNVMSWTATITGYVQSGGHDKEAIELYCRMIDGQVVPNHFTFSSLLKACGNLSDPAAGEQIYTNAVKHGLASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNTIVDGYAKNLDSNEAFELFNEIEDTGIEVDAFTFASLLSGAASIGAVGKGEQIHARLMKAGFKSNQCISNSLISMYSKCGNIEAALQVFSEIEDHTVISWTSIVMGLAKHGFATRALKMFQEMLKTGIKPNEVTYIAVLSACSHVGMINEGWKHFNAMYKEHRISPRMEHYACMVDLLGRSGFLEEAIQFINSMPFMADALVWRTLLGACQVHGNTEVGKHAAKMIIKQEPNDPAAYILLSNLYASSGQWDEVVRIRKNMKERNLVKEAGCSWIETENRVYNFHVGDTSHPQAREIYEELDQLSLKIKELGYVPNTNFVLHDVEEKQKEQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAMKYISIATGREIVLRDSNRFHHFKGGACSCNDYW 858    
BLAST of XM_017403426.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DCT2 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFS32177.1}))

HSP 1 Score: 1211.44 bits (3133), Expect = 0.000e+0
Identity = 573/858 (66.78%), Postives = 702/858 (81.82%), Query Frame = 0
 
Query:    6 VSLPLPAKTPLKPININP-------------NFKPPNFD---DNLIHLANTAQIHKAMH-LITTHQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAK--SGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
            +SL LP+ T   P++  P               K PNF+   D LI LAN   +H+A+  L    Q  LTPDL TYS LLKSCIRTR F+LGKL+H  L  S L  D   +++NSLI+LYSKSGD VTA  +F  +G+RRDLVSWSA+IS FAH+GME  +V  F+DM++ GE PNQFCF+ VI AC +  N   G+ +FGFVIKTGYFE+D+CVGCAL+DLFAKG+ D+  A  VFD+MPE+N+V+WTL ITRY+Q+G   +A+ELF+ MV +G++ DRFTFSS+IS CAEL  L +G+QLHS VVK  L+ DVCVGCSL+DMYAK  + GS+++SR VF+ + + N+MSWT++ITGYV  GG D+EAIE+Y +MIE RV PN  TFSSLLKACGNL+D  AGEQIY++ VKLG +SVNCVGNS +SMYARSG +EDA+KAF+ILFEKNL+SYNI+VD YAKNL S EAF+IFNQIEDT  GVDAFT+ASLLSGAAS+GAV KGEQ+HARLLK+GFESN  I NALISMYS+CGNI AA QVF +MED NV+SWTSIITGFAKHG A +A +MF++ML  G+KPN+VTY+AVLSACS+ G+++EGW HFN+MYK+HGI P+MEHYAC+VDLLGR GYLE AV+FI SMP+TAD LVWRTLLGAC VH N E+GK+A+EMI++Q+P+DPAA++LLSNLYAS  QW+ V +IRK MKQ+++VKE GCSWIET N VHKF+VG+TSHPQAR+IY +LDQLA+KIK++GY+PDTN VLH+V EEQKEQYLFQHSEKIAVAFGLIST+K KPIR+FKNLR+CGDCH AMKYIS+ATGR+IV+RDSNRFHHF +G+CSCN+YW
Sbjct:    2 ISLSLPSPTKSVPLSFKPRNPSRQKTASSIQTVKHPNFELFKDRLIRLANVGHLHQAISALDVMTQQGLTPDLITYSVLLKSCIRTRQFNLGKLVHTKLSESQLELDS--VLINSLISLYSKSGDWVTANDIFQDMGERRDLVSWSAMISCFAHSGMESRAVSTFIDMLEFGECPNQFCFAAVIQACSNSENARTGMVVFGFVIKTGYFESDVCVGCALVDLFAKGMGDLNSAHKVFDKMPEKNSVSWTLTITRYSQLGQPQEAMELFVDMVVSGYMPDRFTFSSIISACAELEQLSLGQQLHSQVVKYRLAFDVCVGCSLVDMYAKCAADGSMVNSRKVFDLLPDHNVMSWTSVITGYVQGGGHDKEAIELYCRMIEDRVSPNHFTFSSLLKACGNLSDPTAGEQIYTHVVKLGLASVNCVGNSHISMYARSGRMEDARKAFDILFEKNLVSYNIIVDGYAKNLYSSEAFEIFNQIEDTGSGVDAFTFASLLSGAASIGAVDKGEQIHARLLKAGFESNLSISNALISMYSRCGNIEAAIQVFTEMEDWNVVSWTSIITGFAKHGFATKALDMFQEMLETGIKPNEVTYIAVLSACSYVGMINEGWMHFNSMYKDHGIRPRMEHYACMVDLLGRSGYLEEAVKFINSMPFTADALVWRTLLGACGVHGNIELGKHASEMIIEQEPNDPAAYILLSNLYASAGQWEDVMKIRKCMKQKSLVKEAGCSWIETENKVHKFHVGETSHPQAREIYEELDQLALKIKEMGYVPDTNVVLHDVEEEQKEQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHNAMKYISMATGREIVLRDSNRFHHFNNGACSCNDYW 857    
BLAST of XM_017403426.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q961 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSS04441.1}))

HSP 1 Score: 1210.67 bits (3131), Expect = 0.000e+0
Identity = 576/862 (66.82%), Postives = 704/862 (81.67%), Query Frame = 0
 
Query:    6 VSLPLPAKTPLKPININPNFKP-----------------PNFD---DNLIHLANTAQIHKAMH-LITTHQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAK--SGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
            +SL LP+ T   P    P+FKP                 PNF+   D LI LAN   +H+A+  L    Q  LTPDL TYS LLKSCIRTR F+LGKL+H  L  S L  D   +++NSLI+LYSKSGD VTA  +F  +G+RRDLVSWSA+IS FAH+GME  +V  F+DM++ GE PNQFCF+ VI AC +  N   G+ +FGFV+KTGYFE+D+CVGCAL+DLFAKG+ D+  A  VFD+MPE+N+V+WTLMITRY+Q+G   +A+ELF+ MV +G++ DRFTFSS+IS CAEL  L +G+QLHS VVK  L+ DVCVGCSL+DMYAK  + GS+++SR VF+ + + N+MSWT++ITGYV  GG D+EAIE+Y +MIE RV PN  TFSSLLKACGNL+D  AGEQIY++AVKLG +SVNCVGNS +SMYARSG +EDA+KAF+ILFEKNL+SYNI+VD YAKNL S EAF+IFNQIEDT  GVDAFT+ASLLSGAAS+GAV KGEQ+HARLLK+GFESN  I NALISMYS+CGNI AA QVF +MED NV+SWTSIITGFAKHG A +A +MF++ML  G+KPN+VTY+AVLSACS+ G+++EGW HFN+MYK+HGI P+MEHYAC+VDLLGR GYLE AV+FI SMP+TAD LVWRTLLGAC VH N E+GK+A+EMI++Q+P+DPAA++LLSNLYAS  QW+ V +IRK MKQ+++VKE GCSWIET N VHKF+VG+TSHPQAR+IY +LDQLA+KIK++GY+PDTN VLH+V EEQKEQYLFQHSEKIAVAFGLIST+K KPIR+FKNLR+CGDCH AMKYIS+AT R+IV+RDSNRFHHF DG+CSCN+YW
Sbjct:    2 ISLSLPSPTKSVP----PSFKPRNPSRQKTTSSIKTVKHPNFELFKDRLIRLANVGHLHQAISALDLMTQQGLTPDLITYSVLLKSCIRTRQFNLGKLVHTKLSESQLELDS--VLINSLISLYSKSGDWVTANDIFQDMGERRDLVSWSAMISCFAHSGMESRAVSTFIDMLEFGECPNQFCFAAVIQACSNSENARTGMVVFGFVMKTGYFESDVCVGCALVDLFAKGMGDLNSAHKVFDKMPEKNSVSWTLMITRYSQLGQPKEAMELFVDMVVSGYMPDRFTFSSIISACAELEQLSLGQQLHSQVVKYRLAFDVCVGCSLVDMYAKCATDGSMVNSRKVFDLLPDHNVMSWTSVITGYVQGGGHDKEAIELYCRMIEDRVSPNHFTFSSLLKACGNLSDPTAGEQIYTHAVKLGLASVNCVGNSHISMYARSGRMEDARKAFDILFEKNLVSYNIIVDGYAKNLYSSEAFEIFNQIEDTGSGVDAFTFASLLSGAASIGAVDKGEQIHARLLKAGFESNLSISNALISMYSRCGNIEAAIQVFTEMEDWNVVSWTSIITGFAKHGFATKALDMFQEMLETGIKPNEVTYIAVLSACSYVGMINEGWMHFNSMYKDHGIRPRMEHYACMVDLLGRSGYLEEAVKFINSMPFTADALVWRTLLGACGVHGNIELGKHASEMIIEQEPNDPAAYILLSNLYASAGQWEDVMKIRKCMKQKSLVKEAGCSWIETENKVHKFHVGETSHPQAREIYKELDQLALKIKEMGYVPDTNVVLHDVEEEQKEQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHNAMKYISMATEREIVLRDSNRFHHFNDGACSCNDYW 857    
BLAST of XM_017403426.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SZW0 ((pentatricopeptide repeat-containing protein At3g49170, chloroplastic {ECO:0000313|RefSeq:XP_011076006.1, ECO:0000313|RefSeq:XP_011076007.1}))

HSP 1 Score: 1177.54 bits (3045), Expect = 0.000e+0
Identity = 558/852 (65.49%), Postives = 687/852 (80.63%), Query Frame = 0
 
Query:    4 VCVSLPLPAKTPLKPININ-PNFKPP------NFDDNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMI-ESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
            + +SLP P    LK    N  + +PP         D LI  A+  ++ +A+ ++    +  LTPDL TYS LLKSCIRTRNF+LG+L+H+ L +S L  D   I+LNSLI+LY K GD   A+ +F S+G+ RDLVSWSA+IS +AHNG+  E++ +F +M++ GE PN+FCFS  I AC SR    +GL IFG+++KTG+FE+D+CVGCALIDLF KG  D++ A  VFD+MP++NAV+WTLMITR AQMG   DA+ LF+ MV +GFV DRFTFSS +S C+ELG L +G+QLH  VVK+GLS DVCVGCSL+DMYAKS   GS+ DSR VF+R+ E N+MSWTA+ITGYV +GG D EAI +Y +MI E RV PN  TF+ LLKACGNL +   GEQ+Y +A+KLG ++VNCVGNSL+SMYA+S  +EDAQKAFE LF+KNL+SYN LV+ Y +NL++DEAF IFNQIE+  +G+DAFT+ASLLSGAAS GAVG+GEQ+HARLLK GFESN  + NALISMY++CGNI A YQVF +MEDRNVISWTSIITGFAKHG AKRA E+F+QML  G++PN+VTY+AVLSACSHAGL+DEGW+HF+ MYKEHGI P+MEHYAC+VD+LGR G+L+ AV+FI SMP+ A+ LVWRTLLGAC VH N ++GK+ AEMIL+QDP+DPAAHVLLSNLYAS SQW+    IRKGMK RN+VKE GCSWIE  N VHKFYVGDT HP+AR+IY +LD LA+KIK++GY+PDTNFVLH V EEQKEQYLFQHSEKIA+A+GLIST+KPKPIRIFKNLR+CGDCH AMKYIS+ATGR+IV+RDSNRFHH  DG C+CN+YW
Sbjct:    2 ISLSLPSPTSPSLKVNRHNVTSLRPPRSITFQTLKDRLIRQADAGRVQEAISILDLMSRTNLTPDLTTYSVLLKSCIRTRNFELGQLVHSKLTASRLGLD--AIVLNSLISLYWKCGDWRKAEEIFSSMGEMRDLVSWSAMISCYAHNGLNMEAIFLFCEMLEFGEWPNEFCFSAAIRACSSREYARIGLVIFGYLMKTGFFESDVCVGCALIDLFVKGFGDLESANKVFDKMPDKNAVSWTLMITRLAQMGSPRDAIGLFMDMVVSGFVPDRFTFSSGLSACSELGALRIGRQLHGWVVKNGLSLDVCVGCSLVDMYAKSTVDGSIDDSRKVFDRIPEHNVMSWTAIITGYVQNGGRDDEAIALYCRMITEGRVKPNHFTFAGLLKACGNLFNPALGEQVYGHALKLGLATVNCVGNSLISMYAKSDRMEDAQKAFEFLFDKNLVSYNALVNGYTRNLDADEAFQIFNQIENFSVGLDAFTFASLLSGAASTGAVGRGEQIHARLLKVGFESNLCVCNALISMYTRCGNIEAGYQVFSEMEDRNVISWTSIITGFAKHGFAKRALELFQQMLDCGIEPNEVTYIAVLSACSHAGLIDEGWRHFDMMYKEHGIRPRMEHYACMVDILGRAGFLDKAVEFINSMPFIANALVWRTLLGACRVHGNMKLGKHVAEMILQQDPNDPAAHVLLSNLYASMSQWEDAARIRKGMKDRNLVKEAGCSWIEIANKVHKFYVGDTKHPEAREIYEELDHLAIKIKEMGYVPDTNFVLHEVEEEQKEQYLFQHSEKIALAYGLISTSKPKPIRIFKNLRVCGDCHAAMKYISVATGREIVLRDSNRFHHIKDGKCTCNDYW 851    
BLAST of XM_017403426.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7V352 ((pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X1 {ECO:0000313|RefSeq:XP_009760813.1}))

HSP 1 Score: 1170.22 bits (3026), Expect = 0.000e+0
Identity = 559/853 (65.53%), Postives = 694/853 (81.36%), Query Frame = 0
 
Query:    4 VCVSLPLPAK-TPLKPINI--------NPNFKPPNFDDNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
            + +SLP PAK  P  P N+        NPNF+     D LI  AN   + +A+  +    Q  LTPDL +Y+ LLKSCIRTRNF LG+LLH+ L +S L  D   I+LNSLI+LY+K GD  TAK +F+++G++RDLVSWSA+IS FAH GME E+V  F DM++ GE PNQFCFS VI ACCS     +GL IFGFV+KTGYFE+D+CVGCALIDLFAKG  D++ A+ VFDRMPERN VTWTLMITR++Q+G   DA+ LFL MV  GFV DRFTFS V+S CA++G    G+QLH  VVKS LS+DVCVGCSL+DMYAK    GS+ DSR VF++M++ N+MSWTA+ITGYV SG +D EAI++Y +MIE  V PN  TFSSLLKACGNL++   GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+KNL+S EAF++F+QI D+E+G+DAFT+ASLLSGAAS+GAVGKGEQ+HAR+LK+G  SNQ + NALISMYS+CGNI AA QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML AG+KPN++TY+AVLSACSH GL++EGWK+F++M  +H I P+MEHYAC+VDLL R G LE AVQFI+S+P   D LVWRTLLGAC V+ N ++GKYAAEMIL+Q+P+DPAAHVLLSNLYAS+ +W+ V +IRK MK++ +VKE GCSWIE  N+VH+FYVGDT+HP+A++IY +LD++A+KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I+VRDSNRFHH  DG CSCN+YW
Sbjct:    2 ITLSLPSPAKLIPPSPKNLTSLQIHRRNPNFEA--LKDRLIRQANVGNLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNNSSLEPD--TIVLNSLISLYAKMGDWETAKMIFENMGEKRDLVSWSAMISCFAHCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGEFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQMGLSSFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSTEAFELFSQI-DSEVGIDAFTFASLLSGAASIGAVGKGEQIHARVLKAGIHSNQSVCNALISMYSRCGNIEAASQVFERMEDRNVISWTSIITGFAKHGFAYRALELFNQMLGAGIKPNEITYIAVLSACSHVGLVEEGWKYFDSMSSDHRITPRMEHYACMVDLLSRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVYGNLQLGKYAAEMILEQEPNDPAAHVLLSNLYASRGEWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHRFYVGDTNHPRAKEIYEKLDKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTSKSKPIRIFKNLRVCGDCHNAMKFISVAEGREIIVRDSNRFHHIKDGLCSCNDYW 849    
BLAST of XM_017403426.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3YXQ0 ((pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like isoform X1 {ECO:0000313|RefSeq:XP_016457116.1}))

HSP 1 Score: 1170.22 bits (3026), Expect = 0.000e+0
Identity = 561/853 (65.77%), Postives = 694/853 (81.36%), Query Frame = 0
 
Query:    4 VCVSLPLPAK-TPLKPINI--------NPNFKPPNFDDNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
            + +SLP PAK  P  P N+        NPNF+     D LI  AN   + +A+  +    Q  LTPDL +Y+ LLKSCIRTRNF LG+LLH+ L +S L  D   I+LNSLI+LY+K GD  TAK +F+++G++RDLVSWSA+IS FAH GME E+V  F DM++ GE PNQFCFS VI ACCS     +GL IFGFV+KTGYFE+D+CVGCALIDLFAKG  D++ A+ VFDRMPERN VTWTLMITR++Q+G   DA+ LFL MV  GFV DRFTFS V+S CA+LG    G+QLH  VVKS LS+DVCVGCSL+DMYAK    GS+ DSR VF++M++ N+MSWTA+ITGYV SG +D EAI++Y +MIE  V PN  TFSSLLKACGNL++   GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+KNL+S EAF++F+QI D+E+G+DAFT+ASLLSGAAS+GAVGKGEQ+HAR+LK+G  SNQ + NALISMYS+CGNI AA QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML AG+KPN++TY+AVLSACSH GL++EGWK+F++M  +H I P+MEHYAC+VDLL R G LE AVQFI+S+P   D LVWRTLLGAC V+ N ++GKYAAEMIL+Q+PSDPAAHVLLSNLYAS+ +W+ V +IRK MK++ +VKE GCSWIE  N+VH+FYVGDT+HP+A++IY +LD++A+KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I+VRDSNRFHH  DG CSCN+YW
Sbjct:    2 ITLSLPSPAKLIPPSPKNLTSLQIHRRNPNFEA--LKDRLIRQANVGNLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNNSSLEPD--TIVLNSLISLYAKMGDWETAKMIFENMGEKRDLVSWSAMISCFAHCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGVFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQLGLSLFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSTEAFELFSQI-DSEVGIDAFTFASLLSGAASIGAVGKGEQIHARVLKAGIHSNQSVCNALISMYSRCGNIEAASQVFERMEDRNVISWTSIITGFAKHGFAYRALELFNQMLGAGIKPNEITYIAVLSACSHVGLVEEGWKYFDSMSSDHRITPRMEHYACMVDLLSRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVYGNLQLGKYAAEMILEQEPSDPAAHVLLSNLYASRGEWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHRFYVGDTNHPRAKEIYEKLDKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTSKSKPIRIFKNLRVCGDCHNAMKFISVAEGREIIVRDSNRFHHIKDGLCSCNDYW 849    
BLAST of XM_017403426.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1BPQ1 ((Pentatricopeptide repeat-containing protein, chloroplastic {ECO:0000313|EnsemblPlants:PGSC0003DMT400050032}))

HSP 1 Score: 1170.22 bits (3026), Expect = 0.000e+0
Identity = 561/851 (65.92%), Postives = 690/851 (81.08%), Query Frame = 0
 
Query:    4 VCVSLPLPAK-TPLKPININ---PNFKPPNFD---DNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
            + +SLP PAK  P  P + N      + P+F+   D LI  AN   + +A+  +    Q   TPDL +Y+ LLKSCIRTRNF  G+LLH+ L  S L  D   I+LNSLI+LYSK G   TA+ +F+S+G++RDLVSWSA+IS +AH GME ESV  F DM++ GE PNQFCFS VI ACCS     VGL IFGFVIKTGYFE+D+CVGCALIDLFAKG SD++ A+ VFDRMPERN VTWTLMITR++Q+G S DA+ LFL MV  GFV DRFTFS V+S CAE G   +G+QLH  V+KS LS DVCVGCSL+DMYAKS   GS+ DSR VF+RM++ N+MSWTA+ITGYV SG +D EAI++Y +MI++ V PN  TFSSLLKACGNL++   GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+K+L+S EAF++F+ + D+E+ VD FT+ASLLSGAASVGAVGKGEQ+HAR+LK+G +SNQ + NALISMYS+CGNI AA+QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML  G+KPN+VTY+AVLSACSH GL+DEGWK+F++M K HGI P+MEHYAC+VDLLGR G LE AVQFI+S+P   D LVWRTLLGAC VH N ++GKYA+EMIL+Q+P+DPAAHVLLSNLYAS+ QW+ V +IRK MK++ +VKE GCSWIE  N+VHKFYVGDT HP+A++IY +L ++A+KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST K KPIRIFKNLR+CGDCH AMK+IS+A GR+I++RDSNRFHH  DG CSCN+YW
Sbjct:    2 ITLSLPSPAKFIPPSPKSKNLKSRRIRNPDFEALKDTLIRQANVGNLKQAISTLDHISQMGFTPDLTSYTVLLKSCIRTRNFQFGQLLHSKLNDSPLEPD--TILLNSLISLYSKMGSWETAEKIFESMGEKRDLVSWSAMISCYAHCGMELESVFTFFDMVEFGEYPNQFCFSAVIQACCSAELGWVGLAIFGFVIKTGYFESDICVGCALIDLFAKGFSDLRSAKKVFDRMPERNLVTWTLMITRFSQLGASKDAVRLFLEMVSEGFVPDRFTFSGVLSACAEPGLSLLGRQLHGGVIKSRLSADVCVGCSLVDMYAKSTMDGSMDDSRKVFDRMADHNVMSWTAIITGYVQSGHYDMEAIKLYCRMIDNPVKPNHFTFSSLLKACGNLSNPAIGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKSLDSAEAFELFSHL-DSEVEVDTFTFASLLSGAASVGAVGKGEQIHARVLKAGIQSNQSVSNALISMYSRCGNIEAAFQVFEGMEDRNVISWTSIITGFAKHGFAHRAVELFNQMLEDGIKPNEVTYIAVLSACSHVGLVDEGWKYFDSMSKNHGITPRMEHYACMVDLLGRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVHGNLQLGKYASEMILEQEPNDPAAHVLLSNLYASRRQWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHKFYVGDTKHPKAKEIYEKLGKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTCKQKPIRIFKNLRVCGDCHNAMKFISVAEGREIIIRDSNRFHHIKDGLCSCNDYW 849    
BLAST of XM_017403426.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3YZ42 ((pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like isoform X2 {ECO:0000313|RefSeq:XP_016457117.1}))

HSP 1 Score: 1168.3 bits (3021), Expect = 0.000e+0
Identity = 560/853 (65.65%), Postives = 693/853 (81.24%), Query Frame = 0
 
Query:    4 VCVSLPLPAK-TPLKPINI--------NPNFKPPNFDDNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
            + +SLP PAK  P  P N+        NPNF+     D LI  AN   + +A+  +    Q  LTPDL +Y+ LLKSCIRTRNF LG+LLH+ L +S L  D   I+LNSLI+LY+K GD  TAK +F+++G++RDLVSWSA+IS FAH GME E+V  F DM++ GE PNQFCFS VI ACCS     +GL IFGFV+KTGYFE+D+CVGCALIDLFAKG  D++ A+ VFDRMPERN VTWTLMITR++Q+G   DA+ LFL MV  GFV DRFTFS V+S CA+LG    G+QLH  VVKS LS+DVCVGCSL+DMYAK    GS+ DSR VF++M++ N+MSWTA+ITGYV SG +D EAI++Y +MIE  V PN  TFSSLLKACGNL++   GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+KNL+S EAF++F+QI D+E+G+DAFT+ASLLSGAAS+GAVGKGEQ+HAR+LK+G  SNQ + NALISMYS+CGNI AA QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML AG+KPN++TY+AVLSACSH GL++EGWK+F++M  +H I P+MEHYAC+VDLL R G LE AVQFI+S+P   D LVWRTLLGAC V+ N ++GKYAAEMIL+Q+PSDPAAHVLLSNLYAS+ +W+ V +IRK MK++ +VKE GCSWIE  N+VH+FYVGDT+HP+A++IY +LD++A+KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I+VRDSNRFHH  D  CSCN+YW
Sbjct:    2 ITLSLPSPAKLIPPSPKNLTSLQIHRRNPNFEA--LKDRLIRQANVGNLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNNSSLEPD--TIVLNSLISLYAKMGDWETAKMIFENMGEKRDLVSWSAMISCFAHCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGVFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQLGLSLFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSTEAFELFSQI-DSEVGIDAFTFASLLSGAASIGAVGKGEQIHARVLKAGIHSNQSVCNALISMYSRCGNIEAASQVFERMEDRNVISWTSIITGFAKHGFAYRALELFNQMLGAGIKPNEITYIAVLSACSHVGLVEEGWKYFDSMSSDHRITPRMEHYACMVDLLSRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVYGNLQLGKYAAEMILEQEPSDPAAHVLLSNLYASRGEWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHRFYVGDTNHPRAKEIYEKLDKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTSKSKPIRIFKNLRVCGDCHNAMKFISVAEGREIIVRDSNRFHHITDELCSCNDYW 849    
BLAST of XM_017403426.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7VG40 ((pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X2 {ECO:0000313|RefSeq:XP_009760814.1}) (pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X3 {ECO:0000313|RefSeq:XP_009760815.1}))

HSP 1 Score: 1167.91 bits (3020), Expect = 0.000e+0
Identity = 558/853 (65.42%), Postives = 693/853 (81.24%), Query Frame = 0
 
Query:    4 VCVSLPLPAK-TPLKPINI--------NPNFKPPNFDDNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
            + +SLP PAK  P  P N+        NPNF+     D LI  AN   + +A+  +    Q  LTPDL +Y+ LLKSCIRTRNF LG+LLH+ L +S L  D   I+LNSLI+LY+K GD  TAK +F+++G++RDLVSWSA+IS FAH GME E+V  F DM++ GE PNQFCFS VI ACCS     +GL IFGFV+KTGYFE+D+CVGCALIDLFAKG  D++ A+ VFDRMPERN VTWTLMITR++Q+G   DA+ LFL MV  GFV DRFTFS V+S CA++G    G+QLH  VVKS LS+DVCVGCSL+DMYAK    GS+ DSR VF++M++ N+MSWTA+ITGYV SG +D EAI++Y +MIE  V PN  TFSSLLKACGNL++   GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+KNL+S EAF++F+QI D+E+G+DAFT+ASLLSGAAS+GAVGKGEQ+HAR+LK+G  SNQ + NALISMYS+CGNI AA QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML AG+KPN++TY+AVLSACSH GL++EGWK+F++M  +H I P+MEHYAC+VDLL R G LE AVQFI+S+P   D LVWRTLLGAC V+ N ++GKYAAEMIL+Q+P+DPAAHVLLSNLYAS+ +W+ V +IRK MK++ +VKE GCSWIE  N+VH+FYVGDT+HP+A++IY +LD++A+KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I+VRDSNRFHH  D  CSCN+YW
Sbjct:    2 ITLSLPSPAKLIPPSPKNLTSLQIHRRNPNFEA--LKDRLIRQANVGNLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNNSSLEPD--TIVLNSLISLYAKMGDWETAKMIFENMGEKRDLVSWSAMISCFAHCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGEFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQMGLSSFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSTEAFELFSQI-DSEVGIDAFTFASLLSGAASIGAVGKGEQIHARVLKAGIHSNQSVCNALISMYSRCGNIEAASQVFERMEDRNVISWTSIITGFAKHGFAYRALELFNQMLGAGIKPNEITYIAVLSACSHVGLVEEGWKYFDSMSSDHRITPRMEHYACMVDLLSRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVYGNLQLGKYAAEMILEQEPNDPAAHVLLSNLYASRGEWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHRFYVGDTNHPRAKEIYEKLDKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTSKSKPIRIFKNLRVCGDCHNAMKFISVAEGREIIVRDSNRFHHITDELCSCNDYW 849    
BLAST of XM_017403426.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2C1T5 (DYW_deaminase domain-containing protein {ECO:0000259|Pfam:PF14432})

HSP 1 Score: 1165.21 bits (3013), Expect = 0.000e+0
Identity = 560/848 (66.04%), Postives = 688/848 (81.13%), Query Frame = 0
 
Query:    4 VCVSLPLPAK-TPLKPINI---NPNFKPPNFDDNLIHLANTAQIHKAMHLIT-THQHKLTPDLNTYSTLLKSCIRTRNFDLGKLLHNNLISSGLVFDDHVIMLNSLITLYSKSGDLVTAKCLFDSVGDRRDLVSWSAIISGFAHNGMERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 844
            + +SLP PAK TP  P +    NP+F+     D LI  AN   + +A+  +    Q   TPDL +Y+ LLKSCIRTRNF +G+LLH+ L  S L  D   I+LNSLI+L+SK G   TA+ +F+S+G++RDLVSWSA+IS +AH GME ESV  F DM++ GE PNQFCFS VI ACCS     VGL IFGF IKTGYFE+D+CVGCALIDLFAKG SD++ A+ VFDRMPERN VTWTLMITR++Q+G S DA+ LFL MV  GFV DRFTFS V+S CAE G   +G+QLH  V+KS LS DVCVGCSL+DMYAKS   GS+ DSR VF+RM++ N+MSWTA+ITGYV SG +D EAI++Y +MI+  V PN  TFS LLKACGNL+D   GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL SYNI+VD  +K+L+S EAF++F+ I D+E+GVDAFT+ASLLSGAASVGAVGKGEQ+H+R+LK+G +SNQ + NALISMYS+CGNI AA+QVF+ MEDRNVISWTSIITGFAKHG A RA E F QML  G+KPN+VTY+AVLSACSH GL+DEGWK+F++M  +HGI P+MEHYAC+VDLLGR G LE AVQFI+S+P   D LVWRTLLGAC VH N ++GKYA+EMIL+Q+P+DPAAHVLLSNLYAS+ QW+ V +IRK MK++ +VKE GCSWIE  N+VHKFYVGDT HP+A++IY +LD++ +KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I++RDSNRFHH  DG CSCN+YW
Sbjct:    2 ITLSLPSPAKFTPPSPKSRRIRNPDFEA--LKDTLIRQANVGNLKQAISTLDHISQMGFTPDLTSYTVLLKSCIRTRNFQIGQLLHSKLNDSPLQPD--TIVLNSLISLHSKMGSWETAEKIFESMGEKRDLVSWSAMISCYAHCGMELESVFTFFDMVEFGEYPNQFCFSAVIQACCSAKLGWVGLAIFGFAIKTGYFESDVCVGCALIDLFAKGFSDLRSAKKVFDRMPERNLVTWTLMITRFSQLGASKDAVRLFLEMVSEGFVPDRFTFSGVLSACAEPGLSLLGRQLHGGVIKSRLSADVCVGCSLVDMYAKSTMDGSMDDSRKVFDRMADHNVMSWTAIITGYVQSGHYDMEAIKLYCRMIDGLVKPNHFTFSGLLKACGNLSDPAIGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLASYNIIVDECSKSLDSAEAFELFSHI-DSEVGVDAFTFASLLSGAASVGAVGKGEQIHSRVLKAGTQSNQSVSNALISMYSRCGNIEAAFQVFEGMEDRNVISWTSIITGFAKHGFAHRAVEFFNQMLEDGIKPNEVTYIAVLSACSHVGLVDEGWKYFDSMSIDHGITPRMEHYACMVDLLGRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVHGNLQLGKYASEMILEQEPNDPAAHVLLSNLYASRGQWEEVAKIRKDMKEKRMVKEAGCSWIEAENSVHKFYVGDTKHPKAKEIYEKLDKVVLKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTSKQKPIRIFKNLRVCGDCHNAMKFISVAEGREIIIRDSNRFHHIKDGLCSCNDYW 844    
Match NameStatsDescription
A0A7J7I2V1E-Value: 0.000e+0, PID: 68.46DYW_deaminase domain-containing protein {ECO:00002... [more]
A0A7J0DCT2E-Value: 0.000e+0, PID: 66.78(Tetratricopeptide repeat (TPR)-like superfamily p... [more]
A0A2R6Q961E-Value: 0.000e+0, PID: 66.82(Pentatricopeptide repeat-containing protein {ECO:... [more]
A0A6I9SZW0E-Value: 0.000e+0, PID: 65.49(pentatricopeptide repeat-containing protein At3g4... [more]
A0A1U7V352E-Value: 0.000e+0, PID: 65.53(pentatricopeptide repeat-containing protein At3g4... [more]
A0A1S3YXQ0E-Value: 0.000e+0, PID: 65.77(pentatricopeptide repeat-containing protein At3g4... [more]
M1BPQ1E-Value: 0.000e+0, PID: 65.92(Pentatricopeptide repeat-containing protein, chlo... [more]
A0A1S3YZ42E-Value: 0.000e+0, PID: 65.65(pentatricopeptide repeat-containing protein At3g4... [more]
A0A1U7VG40E-Value: 0.000e+0, PID: 65.42(pentatricopeptide repeat-containing protein At3g4... [more]
A0A6N2C1T5E-Value: 0.000e+0, PID: 66.04DYW_deaminase domain-containing protein {ECO:00002... [more]
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
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