XM_017403431.1

Resource Type: 
Polypeptide
Name: 
XM_017403431.1
Identifier: 
XM_017403431.1-protein
Sequence: 
MERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKT
GYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYA
QMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLV
VKSGLSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITG
YVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIY
SNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILV
DAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQL
HARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSI
ITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWK
HFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVW
RTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHV
TEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQL
AVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKP
IRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW
Sequence Length: 
700
Sequence Checksum: 
72d33ca2dab1da9ca738ccfd4eaa89ee
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017403431.1, derives from mRNA, XM_017403431.1.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017403431.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017403431.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I2V1 (DYW_deaminase domain-containing protein {ECO:0000259|Pfam:PF14432})

HSP 1 Score: 1079.32 bits (2790), Expect = 0.000e+0
Identity = 496/702 (70.66%), Postives = 601/702 (85.61%), Query Frame = 0
 
Query:    1 MERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSG--GSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 700
            M+ +S+  F DM++ GE PNQFC + V+ AC +  N  +G  IFGFVIKTGYFE+D+C+GCALID+F KG  D+  A+ VFD M ERNAVTWTLMITRY+Q+G   DA+ELF+ MV +GF+ DRFTFSS I+ CAEL  L +G+QLHSLVVKS L+ DVCVGCSL+DMY K    GS+++SR VF+RM   N+MSWTA ITGYV SGG D+EAIE+Y +MI+ +V+PN  TFSSLLKACGNL+D  AGEQIY+NAVK G +SVNCVGNSL+SMYARSG +EDA+KAF+ILFEKNL+SYN +VD YAKNL+S+EAF++FN+IEDT I VDAFT+ASLLSGAAS+GAVGKGEQ+HARL+K+GF+SNQ I N+LISMYSKCGNI AA QVF ++ED  VISWTSI+ G AKHG A RA +MF++ML  G+KPN+VTY+AVLSACSH G+++EGWKHFN MYKEH I+P+MEHYAC+VDLLGR G+LE A+QFI SMP+ AD LVWRTLLGAC VH NTE+GK+AA+MI+KQ+P+DPAA++LLSNLYAS  QWD V  IRK MK+RN+VKE GCSWIET N V+ F+VGDTSHPQAR+IY +LDQL++KIK+LGY+P+TNFVLH+V E+QKEQYLFQHSEKIAVAFGLIST+K KPIR+FKNLR+CGDCHTAMKYIS+ATGR+IV+RDSNRFHHF  G+CSCN+YW
Sbjct:  157 MQSQSISTFFDMLEFGEYPNQFCLAAVMQACSNSKNAWIGKIIFGFVIKTGYFESDVCIGCALIDMFVKGCGDLGSAKKVFDIMRERNAVTWTLMITRYSQLGQPKDAVELFIDMVVSGFIPDRFTFSSTINACAELELLSLGQQLHSLVVKSRLTLDVCVGCSLVDMYVKCAVDGSMVNSRKVFDRMPNHNVMSWTATITGYVQSGGHDKEAIELYCRMIDGQVVPNHFTFSSLLKACGNLSDPAAGEQIYTNAVKHGLASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNTIVDGYAKNLDSNEAFELFNEIEDTGIEVDAFTFASLLSGAASIGAVGKGEQIHARLMKAGFKSNQCISNSLISMYSKCGNIEAALQVFSEIEDHTVISWTSIVMGLAKHGFATRALKMFQEMLKTGIKPNEVTYIAVLSACSHVGMINEGWKHFNAMYKEHRISPRMEHYACMVDLLGRSGFLEEAIQFINSMPFMADALVWRTLLGACQVHGNTEVGKHAAKMIIKQEPNDPAAYILLSNLYASSGQWDEVVRIRKNMKERNLVKEAGCSWIETENRVYNFHVGDTSHPQAREIYEELDQLSLKIKELGYVPNTNFVLHDVEEKQKEQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHTAMKYISIATGREIVLRDSNRFHHFKGGACSCNDYW 858    

HSP 2 Score: 227.639 bits (579), Expect = 2.787e-61
Identity = 138/481 (28.69%), Postives = 262/481 (54.47%), Query Frame = 0
 
Query:   12 MIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPE-RNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSG-LSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYAR---SGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSD-EAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQ 486
            M + G  P+   +S ++ +C      D+G  +    +     + D  +  +LI L++K   D   A  +F+ M E R+ V+W+ MI+ +A  G    ++  F  M+E G   ++F  ++V+  C+      +GK +   V+K+G   +DVC+GC+L+DM+ K  G L  ++ VF+ M E+N ++WT MIT Y   G   ++A+E++I M+ S  +P+  TFSS + AC  L     G+Q++S  VK   +   CVG SLV MY +    GS+ +++K F+ +   N++S+   +  Y ++   D EA +++ ++ D ++  + FT++SLL    ++     GEQ++   +K G  S   + N+LISMY++ G +  A + FD + ++N++S+ +I+ G+AK+  +  A E+F ++   G++ +  T+ ++LS  +  G + +G +    + K  G          ++ +  + G +E+A+Q
Sbjct:   66 MTQHGLSPDLVTYSVLLKSCIRTRQFDLGKLVHS-KLSHSLLDPDSVLLNSLITLYSKS-GDWVTANSIFNGMGEHRDMVSWSAMISCFAHNGMQSQSISTFFDMLEFGEYPNQFCLAAVMQACSNSKNAWIGKIIFGFVIKTGYFESDVCIGCALIDMFVKGCGDLGSAKKVFDIMRERNAVTWTLMITRYSQLGQ-PKDAVELFIDMVVSGFIPDRFTFSSTINACAELELLSLGQQLHSLVVKSRLTLDVCVGCSLVDMYVKCAVDGSMVNSRKVFDRMPNHNVMSWTATITGYVQSGGHDKEAIELYCRMIDGQVVPNHFTFSSLLKACGNLSDPAAGEQIYTNAVKHGLASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNTIVDGYAKNLDSNEAFELFNEIEDTGIEVDAFTFASLLSGAASIGAVGKGEQIHARLMKA-GFKSNQCISNSLISMYSKCGNIEAALQ 542    

HSP 3 Score: 179.489 bits (454), Expect = 1.384e-44
Identity = 113/396 (28.54%), Postives = 213/396 (53.79%), Query Frame = 0
 
Query:   96 ITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSE-QNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLG-FSSVNCVGNSLVSMYARS-GSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKC---GNIVAAYQVFDDMEDRNVISWTSIITGFAKH-GLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESA 484
            + R A  G    A+     M ++G   D  T+S ++  C      D+GK +HS +  S L  D  +  SL+ +Y+KS G  + + ++FN M E ++++SW+AMI+ +    G   ++I  +  M+E    PN+   +++++AC N  +   G+ I+   +K G F S  C+G +L+ M+ +  G +  A+K F+I+ E+N +++ +++  Y++     +A ++F  +  +    D FT++S ++  A +  +  G+QLH+ ++KS    +  +  +L+ MY KC   G++V + +VFD M + NV+SWT+ ITG+ +  G  K A E++ +M+   V PN  T+ ++L AC +      G + + N  K HG+         ++ +  R G +E A
Sbjct:   47 LIRLANQGHLHQAISTLDLMTQHGLSPDLVTYSVLLKSCIRTRQFDLGKLVHSKLSHSLLDPDSVLLNSLITLYSKS-GDWVTANSIFNGMGEHRDMVSWSAMISCFA-HNGMQSQSISTFFDMLEFGEYPNQFCLAAVMQACSNSKNAWIGKIIFGFVIKTGYFESDVCIGCALIDMFVKGCGDLGSAKKVFDIMRERNAVTWTLMITRYSQLGQPKDAVELFIDMVVSGFIPDRFTFSSTINACAELELLSLGQQLHSLVVKSRLTLDVCVGCSLVDMYVKCAVDGSMVNSRKVFDRMPNHNVMSWTATITGYVQSGGHDKEAIELYCRMIDGQVVPNHFTFSSLLKACGNLSDPAAGEQIYTNAVK-HGLASVNCVGNSLISMYARSGRMEDA 439    
BLAST of XM_017403431.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q961 ((Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:PSS04441.1}))

HSP 1 Score: 1076.23 bits (2782), Expect = 0.000e+0
Identity = 495/702 (70.51%), Postives = 605/702 (86.18%), Query Frame = 0
 
Query:    1 MERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAK--SGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 700
            ME  +V  F+DM++ GE PNQFCF+ VI AC +  N   G+ +FGFV+KTGYFE+D+CVGCAL+DLFAKG+ D+  A  VFD+MPE+N+V+WTLMITRY+Q+G   +A+ELF+ MV +G++ DRFTFSS+IS CAEL  L +G+QLHS VVK  L+ DVCVGCSL+DMYAK  + GS+++SR VF+ + + N+MSWT++ITGYV  GG D+EAIE+Y +MIE RV PN  TFSSLLKACGNL+D  AGEQIY++AVKLG +SVNCVGNS +SMYARSG +EDA+KAF+ILFEKNL+SYNI+VD YAKNL S EAF+IFNQIEDT  GVDAFT+ASLLSGAAS+GAV KGEQ+HARLLK+GFESN  I NALISMYS+CGNI AA QVF +MED NV+SWTSIITGFAKHG A +A +MF++ML  G+KPN+VTY+AVLSACS+ G+++EGW HFN+MYK+HGI P+MEHYAC+VDLLGR GYLE AV+FI SMP+TAD LVWRTLLGAC VH N E+GK+A+EMI++Q+P+DPAA++LLSNLYAS  QW+ V +IRK MKQ+++VKE GCSWIET N VHKF+VG+TSHPQAR+IY +LDQLA+KIK++GY+PDTN VLH+V EEQKEQYLFQHSEKIAVAFGLIST+K KPIR+FKNLR+CGDCH AMKYIS+AT R+IV+RDSNRFHHF DG+CSCN+YW
Sbjct:  156 MESRAVSTFIDMLEFGECPNQFCFAAVIQACSNSENARTGMVVFGFVMKTGYFESDVCVGCALVDLFAKGMGDLNSAHKVFDKMPEKNSVSWTLMITRYSQLGQPKEAMELFVDMVVSGYMPDRFTFSSIISACAELEQLSLGQQLHSQVVKYRLAFDVCVGCSLVDMYAKCATDGSMVNSRKVFDLLPDHNVMSWTSVITGYVQGGGHDKEAIELYCRMIEDRVSPNHFTFSSLLKACGNLSDPTAGEQIYTHAVKLGLASVNCVGNSHISMYARSGRMEDARKAFDILFEKNLVSYNIIVDGYAKNLYSSEAFEIFNQIEDTGSGVDAFTFASLLSGAASIGAVDKGEQIHARLLKAGFESNLSISNALISMYSRCGNIEAAIQVFTEMEDWNVVSWTSIITGFAKHGFATKALDMFQEMLETGIKPNEVTYIAVLSACSYVGMINEGWMHFNSMYKDHGIRPRMEHYACMVDLLGRSGYLEEAVKFINSMPFTADALVWRTLLGACGVHGNIELGKHASEMIIEQEPNDPAAYILLSNLYASAGQWEDVMKIRKCMKQKSLVKEAGCSWIETENKVHKFHVGETSHPQAREIYKELDQLALKIKEMGYVPDTNVVLHDVEEEQKEQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHNAMKYISMATEREIVLRDSNRFHHFNDGACSCNDYW 857    

HSP 2 Score: 241.121 bits (614), Expect = 4.530e-66
Identity = 146/486 (30.04%), Postives = 264/486 (54.32%), Query Frame = 0
 
Query:   12 MIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPER-NAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSG-LSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYAR---SGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSD-EAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESM 491
            M + G  P+   +S ++ +C      ++G  +    +     E D  +  +LI L++K   D   A  +F  M ER + V+W+ MI+ +A  G    A+  F+ M+E G   ++F F++VI  C+       G  +   V+K+G   +DVCVGC+L+D++AK  G L  +  VF++M E+N +SWT MIT Y   G   +EA+E+++ M+ S  +P+  TFSS++ AC  L     G+Q++S  VK   +   CVG SLV MYA+    GS+ +++K F++L + N++S+  ++  Y +    D EA +++ ++ +  +  + FT++SLL    ++     GEQ++   +K G  S   + N+ ISMY++ G +  A + FD + ++N++S+  I+ G+AK+  +  A E+F Q+   G   +  T+ ++LS  +  G +D+G +    + K  G    +     ++ +  R G +E+A+Q    M
Sbjct:   65 MTQQGLTPDLITYSVLLKSCIRTRQFNLG-KLVHTKLSESQLELDSVLINSLISLYSKS-GDWVTANDIFQDMGERRDLVSWSAMISCFAHSGMESRAVSTFIDMLEFGECPNQFCFAAVIQACSNSENARTGMVVFGFVMKTGYFESDVCVGCALVDLFAKGMGDLNSAHKVFDKMPEKNSVSWTLMITRYSQLGQ-PKEAMELFVDMVVSGYMPDRFTFSSIISACAELEQLSLGQQLHSQVVKYRLAFDVCVGCSLVDMYAKCATDGSMVNSRKVFDLLPDHNVMSWTSVITGYVQGGGHDKEAIELYCRMIEDRVSPNHFTFSSLLKACGNLSDPTAGEQIYTHAVKLGLASVNCVGNSHISMYARSGRMEDARKAFDILFEKNLVSYNIIVDGYAKNLYSSEAFEIFNQIEDTGSGVDAFTFASLLSGAASIGAVDKGEQIHARLLKA-GFESNLSISNALISMYSRCGNIEAAIQVFTEM 546    

HSP 3 Score: 186.422 bits (472), Expect = 6.275e-47
Identity = 115/400 (28.75%), Postives = 217/400 (54.25%), Query Frame = 0
 
Query:   96 ITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSE-QNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLG-FSSVNCVGNSLVSMYARS-GSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKC---GNIVAAYQVFDDMEDRNVISWTSIITGFAK-HGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACI----VDLLGRLGYLESA 484
            + R A +G    A+     M + G   D  T+S ++  C      ++GK +H+ + +S L  D  +  SL+ +Y+KS G  + + ++F  M E ++++SW+AMI+ +  S G +  A+  +I M+E    PN+  F+++++AC N  + + G  ++   +K G F S  CVG +LV ++A+  G +  A K F+ + EKN +S+ +++  Y++     EA ++F  +  +    D FT++S++S  A +  +  G+QLH++++K     +  +  +L+ MY+KC   G++V + +VFD + D NV+SWTS+ITG+ +  G  K A E++ +M+   V PN  T+ ++L AC +      G + +      H +   +    C+    + +  R G +E A
Sbjct:   46 LIRLANVGHLHQAISALDLMTQQGLTPDLITYSVLLKSCIRTRQFNLGKLVHTKLSESQLELDSVLINSLISLYSKS-GDWVTANDIFQDMGERRDLVSWSAMISCFAHS-GMESRAVSTFIDMLEFGECPNQFCFAAVIQACSNSENARTGMVVFGFVMKTGYFESDVCVGCALVDLFAKGMGDLNSAHKVFDKMPEKNSVSWTLMITRYSQLGQPKEAMELFVDMVVSGYMPDRFTFSSIISACAELEQLSLGQQLHSQVVKYRLAFDVCVGCSLVDMYAKCATDGSMVNSRKVFDLLPDHNVMSWTSVITGYVQGGGHDKEAIELYCRMIEDRVSPNHFTFSSLLKACGNLSDPTAGEQIYT-----HAVKLGLASVNCVGNSHISMYARSGRMEDA 438    
BLAST of XM_017403431.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DCT2 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFS32177.1}))

HSP 1 Score: 1074.31 bits (2777), Expect = 0.000e+0
Identity = 494/702 (70.37%), Postives = 604/702 (86.04%), Query Frame = 0
 
Query:    1 MERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAK--SGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 700
            ME  +V  F+DM++ GE PNQFCF+ VI AC +  N   G+ +FGFVIKTGYFE+D+CVGCAL+DLFAKG+ D+  A  VFD+MPE+N+V+WTL ITRY+Q+G   +A+ELF+ MV +G++ DRFTFSS+IS CAEL  L +G+QLHS VVK  L+ DVCVGCSL+DMYAK  + GS+++SR VF+ + + N+MSWT++ITGYV  GG D+EAIE+Y +MIE RV PN  TFSSLLKACGNL+D  AGEQIY++ VKLG +SVNCVGNS +SMYARSG +EDA+KAF+ILFEKNL+SYNI+VD YAKNL S EAF+IFNQIEDT  GVDAFT+ASLLSGAAS+GAV KGEQ+HARLLK+GFESN  I NALISMYS+CGNI AA QVF +MED NV+SWTSIITGFAKHG A +A +MF++ML  G+KPN+VTY+AVLSACS+ G+++EGW HFN+MYK+HGI P+MEHYAC+VDLLGR GYLE AV+FI SMP+TAD LVWRTLLGAC VH N E+GK+A+EMI++Q+P+DPAA++LLSNLYAS  QW+ V +IRK MKQ+++VKE GCSWIET N VHKF+VG+TSHPQAR+IY +LDQLA+KIK++GY+PDTN VLH+V EEQKEQYLFQHSEKIAVAFGLIST+K KPIR+FKNLR+CGDCH AMKYIS+ATGR+IV+RDSNRFHHF +G+CSCN+YW
Sbjct:  156 MESRAVSTFIDMLEFGECPNQFCFAAVIQACSNSENARTGMVVFGFVIKTGYFESDVCVGCALVDLFAKGMGDLNSAHKVFDKMPEKNSVSWTLTITRYSQLGQPQEAMELFVDMVVSGYMPDRFTFSSIISACAELEQLSLGQQLHSQVVKYRLAFDVCVGCSLVDMYAKCAADGSMVNSRKVFDLLPDHNVMSWTSVITGYVQGGGHDKEAIELYCRMIEDRVSPNHFTFSSLLKACGNLSDPTAGEQIYTHVVKLGLASVNCVGNSHISMYARSGRMEDARKAFDILFEKNLVSYNIIVDGYAKNLYSSEAFEIFNQIEDTGSGVDAFTFASLLSGAASIGAVDKGEQIHARLLKAGFESNLSISNALISMYSRCGNIEAAIQVFTEMEDWNVVSWTSIITGFAKHGFATKALDMFQEMLETGIKPNEVTYIAVLSACSYVGMINEGWMHFNSMYKDHGIRPRMEHYACMVDLLGRSGYLEEAVKFINSMPFTADALVWRTLLGACGVHGNIELGKHASEMIIEQEPNDPAAYILLSNLYASAGQWEDVMKIRKCMKQKSLVKEAGCSWIETENKVHKFHVGETSHPQAREIYEELDQLALKIKEMGYVPDTNVVLHDVEEEQKEQYLFQHSEKIAVAFGLISTSKSKPIRVFKNLRVCGDCHNAMKYISMATGREIVLRDSNRFHHFNNGACSCNDYW 857    

HSP 2 Score: 239.965 bits (611), Expect = 9.643e-66
Identity = 145/486 (29.84%), Postives = 264/486 (54.32%), Query Frame = 0
 
Query:   12 MIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPER-NAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSG-LSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYAR---SGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSD-EAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESM 491
            M + G  P+   +S ++ +C      ++G  +    +     E D  +  +LI L++K   D   A  +F  M ER + V+W+ MI+ +A  G    A+  F+ M+E G   ++F F++VI  C+       G  +   V+K+G   +DVCVGC+L+D++AK  G L  +  VF++M E+N +SWT  IT Y   G   +EA+E+++ M+ S  +P+  TFSS++ AC  L     G+Q++S  VK   +   CVG SLV MYA+    GS+ +++K F++L + N++S+  ++  Y +    D EA +++ ++ +  +  + FT++SLL    ++     GEQ++  ++K G  S   + N+ ISMY++ G +  A + FD + ++N++S+  I+ G+AK+  +  A E+F Q+   G   +  T+ ++LS  +  G +D+G +    + K  G    +     ++ +  R G +E+A+Q    M
Sbjct:   65 MTQQGLTPDLITYSVLLKSCIRTRQFNLG-KLVHTKLSESQLELDSVLINSLISLYSKS-GDWVTANDIFQDMGERRDLVSWSAMISCFAHSGMESRAVSTFIDMLEFGECPNQFCFAAVIQACSNSENARTGMVVFGFVIKTGYFESDVCVGCALVDLFAKGMGDLNSAHKVFDKMPEKNSVSWTLTITRYSQLGQ-PQEAMELFVDMVVSGYMPDRFTFSSIISACAELEQLSLGQQLHSQVVKYRLAFDVCVGCSLVDMYAKCAADGSMVNSRKVFDLLPDHNVMSWTSVITGYVQGGGHDKEAIELYCRMIEDRVSPNHFTFSSLLKACGNLSDPTAGEQIYTHVVKLGLASVNCVGNSHISMYARSGRMEDARKAFDILFEKNLVSYNIIVDGYAKNLYSSEAFEIFNQIEDTGSGVDAFTFASLLSGAASIGAVDKGEQIHARLLKA-GFESNLSISNALISMYSRCGNIEAAIQVFTEM 546    

HSP 3 Score: 186.422 bits (472), Expect = 6.515e-47
Identity = 147/563 (26.11%), Postives = 277/563 (49.20%), Query Frame = 0
 
Query:   96 ITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSE-QNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLG-FSSVNCVGNSLVSMYARS-GSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKC---GNIVAAYQVFDDMEDRNVISWTSIITGFAK-HGLAKRAREMFEQMLLAGVKPNDVTYVAVLSAC-----------------------------SH------AGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQF---IESMPYTADPLVWRTLL-GACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSW--IETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYI 610
            + R A +G    A+     M + G   D  T+S ++  C      ++GK +H+ + +S L  D  +  SL+ +Y+KS G  + + ++F  M E ++++SW+AMI+ +  S G +  A+  +I M+E    PN+  F+++++AC N  + + G  ++   +K G F S  CVG +LV ++A+  G +  A K F+ + EKN +S+ + +  Y++     EA ++F  +  +    D FT++S++S  A +  +  G+QLH++++K     +  +  +L+ MY+KC   G++V + +VFD + D NV+SWTS+ITG+ +  G  K A E++ +M+   V PN  T+ ++L AC                             SH      +G M++  K F+ +++++ ++     Y  IVD   +  Y   A +    IE      D   + +LL GA  +    +  +  A ++     S+ +    L ++Y+     +   ++   M+  NVV     SW  I TG   H F        +A D++ ++ +  +K  ++ YI
Sbjct:   46 LIRLANVGHLHQAISALDVMTQQGLTPDLITYSVLLKSCIRTRQFNLGKLVHTKLSESQLELDSVLINSLISLYSKS-GDWVTANDIFQDMGERRDLVSWSAMISCFAHS-GMESRAVSTFIDMLEFGECPNQFCFAAVIQACSNSENARTGMVVFGFVIKTGYFESDVCVGCALVDLFAKGMGDLNSAHKVFDKMPEKNSVSWTLTITRYSQLGQPQEAMELFVDMVVSGYMPDRFTFSSIISACAELEQLSLGQQLHSQVVKYRLAFDVCVGCSLVDMYAKCAADGSMVNSRKVFDLLPDHNVMSWTSVITGYVQGGGHDKEAIELYCRMIEDRVSPNHFTFSSLLKACGNLSDPTAGEQIYTHVVKLGLASVNCVGNSHISMYARSGRMEDARKAFDILFEKNLVS-----YNIIVDGYAKNLYSSEAFEIFNQIEDTGSGVDAFTFASLLSGAASIGAVDKGEQIHARLLKAGFESNLSISNALISMYSRCGNIEAAIQVFTEMEDWNVV-----SWTSIITGFAKHGFAT------KALDMFQEMLETGIKPNEVTYI 590    
BLAST of XM_017403431.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SZW0 ((pentatricopeptide repeat-containing protein At3g49170, chloroplastic {ECO:0000313|RefSeq:XP_011076006.1, ECO:0000313|RefSeq:XP_011076007.1}))

HSP 1 Score: 1057.36 bits (2733), Expect = 0.000e+0
Identity = 488/703 (69.42%), Postives = 592/703 (84.21%), Query Frame = 0
 
Query:    1 MERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMI-ESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 700
            +  E++ +F +M++ GE PN+FCFS  I AC SR    +GL IFG+++KTG+FE+D+CVGCALIDLF KG  D++ A  VFD+MP++NAV+WTLMITR AQMG   DA+ LF+ MV +GFV DRFTFSS +S C+ELG L +G+QLH  VVK+GLS DVCVGCSL+DMYAKS   GS+ DSR VF+R+ E N+MSWTA+ITGYV +GG D EAI +Y +MI E RV PN  TF+ LLKACGNL +   GEQ+Y +A+KLG ++VNCVGNSL+SMYA+S  +EDAQKAFE LF+KNL+SYN LV+ Y +NL++DEAF IFNQIE+  +G+DAFT+ASLLSGAAS GAVG+GEQ+HARLLK GFESN  + NALISMY++CGNI A YQVF +MEDRNVISWTSIITGFAKHG AKRA E+F+QML  G++PN+VTY+AVLSACSHAGL+DEGW+HF+ MYKEHGI P+MEHYAC+VD+LGR G+L+ AV+FI SMP+ A+ LVWRTLLGAC VH N ++GK+ AEMIL+QDP+DPAAHVLLSNLYAS SQW+    IRKGMK RN+VKE GCSWIE  N VHKFYVGDT HP+AR+IY +LD LA+KIK++GY+PDTNFVLH V EEQKEQYLFQHSEKIA+A+GLIST+KPKPIRIFKNLR+CGDCH AMKYIS+ATGR+IV+RDSNRFHH  DG C+CN+YW
Sbjct:  149 LNMEAIFLFCEMLEFGEWPNEFCFSAAIRACSSREYARIGLVIFGYLMKTGFFESDVCVGCALIDLFVKGFGDLESANKVFDKMPDKNAVSWTLMITRLAQMGSPRDAIGLFMDMVVSGFVPDRFTFSSGLSACSELGALRIGRQLHGWVVKNGLSLDVCVGCSLVDMYAKSTVDGSIDDSRKVFDRIPEHNVMSWTAIITGYVQNGGRDDEAIALYCRMITEGRVKPNHFTFAGLLKACGNLFNPALGEQVYGHALKLGLATVNCVGNSLISMYAKSDRMEDAQKAFEFLFDKNLVSYNALVNGYTRNLDADEAFQIFNQIENFSVGLDAFTFASLLSGAASTGAVGRGEQIHARLLKVGFESNLCVCNALISMYTRCGNIEAGYQVFSEMEDRNVISWTSIITGFAKHGFAKRALELFQQMLDCGIEPNEVTYIAVLSACSHAGLIDEGWRHFDMMYKEHGIRPRMEHYACMVDILGRAGFLDKAVEFINSMPFIANALVWRTLLGACRVHGNMKLGKHVAEMILQQDPNDPAAHVLLSNLYASMSQWEDAARIRKGMKDRNLVKEAGCSWIEIANKVHKFYVGDTKHPEAREIYEELDHLAIKIKEMGYVPDTNFVLHEVEEEQKEQYLFQHSEKIALAYGLISTSKPKPIRIFKNLRVCGDCHAAMKYISVATGREIVLRDSNRFHHIKDGKCTCNDYW 851    

HSP 2 Score: 225.328 bits (573), Expect = 1.572e-60
Identity = 148/496 (29.84%), Postives = 262/496 (52.82%), Query Frame = 0
 
Query:    3 RESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPE-RNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSG-LSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARS---GSIEDAQKAFEILFEKNLISYNILVDAYAKN-LNSDEAFDIF-NQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESM 491
            +E++ +   M ++   P+   +S ++ +C    N ++G  +    +       D  V  +LI L+ K   D + A  +F  M E R+ V+W+ MI+ YA  G + +A+ LF  M+E G   + F FS+ I  C+   +  +G  +   ++K+G   +DVCVGC+L+D++ K  G L  +  VF++M ++N +SWT MIT     G   R+AI +++ M+ S  +P+  TFSS L AC  L   + G Q++   VK G S   CVG SLV MYA+S   GSI+D++K F+ + E N++S+  ++  Y +N    DEA  ++   I +  +  + FT+A LL    ++     GEQ++   LK G  +   + N+LISMY+K   +  A + F+ + D+N++S+ +++ G+ ++  A  A ++F Q+    V  +  T+ ++LS  +  G +  G +    + K  G    +     ++ +  R G +E+  Q    M
Sbjct:   49 QEAISILDLMSRTNLTPDLTTYSVLLKSCIRTRNFELGQLVHS-KLTASRLGLDAIVLNSLISLYWK-CGDWRKAEEIFSSMGEMRDLVSWSAMISCYAHNGLNMEAIFLFCEMLEFGEWPNEFCFSAAIRACSSREYARIGLVIFGYLMKTGFFESDVCVGCALIDLFVKGFGDLESANKVFDKMPDKNAVSWTLMITRLAQMGS-PRDAIGLFMDMVVSGFVPDRFTFSSGLSACSELGALRIGRQLHGWVVKNGLSLDVCVGCSLVDMYAKSTVDGSIDDSRKVFDRIPEHNVMSWTAIITGYVQNGGRDDEAIALYCRMITEGRVKPNHFTFAGLLKACGNLFNPALGEQVYGHALKLGLATVNCVGNSLISMYAKSDRMEDAQKAFEFLFDKNLVSYNALVNGYTRNLDADEAFQIFNQIENFSVGLDAFTFASLLSGAASTGAVGRGEQIHARLLKV-GFESNLCVCNALISMYTRCGNIEAGYQVFSEM 540    

HSP 3 Score: 168.318 bits (425), Expect = 5.800e-41
Identity = 112/367 (30.52%), Postives = 198/367 (53.95%), Query Frame = 0
 
Query:   85 PERNAVTWTL--MITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSE-QNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLG-FSSVNCVGNSLVSMYARS-GSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKC---GNIVAAYQVFDDMEDRNVISWTSIITGFAKH-GLAKRAREMFEQMLLAG-VKPNDVTYVAVLSACSH 441
            P R+    TL   + R A  G   +A+ +   M       D  T+S ++  C      ++G+ +HS +  S L  D  V  SL+ +Y K  G    +  +F+ M E ++++SW+AMI+ Y    G + EAI ++ +M+E    PNE  FS+ ++AC +    + G  I+   +K G F S  CVG +L+ ++ +  G +E A K F+ + +KN +S+ +++   A+  +  +A  +F  +  +    D FT++S LS  + +GA+  G QLH  ++K+G   +  +  +L+ MY+K    G+I  + +VFD + + NV+SWT+IITG+ ++ G    A  ++ +M+  G VKPN  T+  +L AC +
Sbjct:   26 PPRSITFQTLKDRLIRQADAGRVQEAISILDLMSRTNLTPDLTTYSVLLKSCIRTRNFELGQLVHSKLTASRLGLDAIVLNSLISLYWKC-GDWRKAEEIFSSMGEMRDLVSWSAMISCYA-HNGLNMEAIFLFCEMLEFGEWPNEFCFSAAIRACSSREYARIGLVIFGYLMKTGFFESDVCVGCALIDLFVKGFGDLESANKVFDKMPDKNAVSWTLMITRLAQMGSPRDAIGLFMDMVVSGFVPDRFTFSSGLSACSELGALRIGRQLHGWVVKNGLSLDVCVGCSLVDMYAKSTVDGSIDDSRKVFDRIPEHNVMSWTAIITGYVQNGGRDDEAIALYCRMITEGRVKPNHFTFAGLLKACGN 390    
BLAST of XM_017403431.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1BPQ1 ((Pentatricopeptide repeat-containing protein, chloroplastic {ECO:0000313|EnsemblPlants:PGSC0003DMT400050032}))

HSP 1 Score: 1051.97 bits (2719), Expect = 0.000e+0
Identity = 490/702 (69.80%), Postives = 595/702 (84.76%), Query Frame = 0
 
Query:    1 MERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 700
            ME ESV  F DM++ GE PNQFCFS VI ACCS     VGL IFGFVIKTGYFE+D+CVGCALIDLFAKG SD++ A+ VFDRMPERN VTWTLMITR++Q+G S DA+ LFL MV  GFV DRFTFS V+S CAE G   +G+QLH  V+KS LS DVCVGCSL+DMYAKS   GS+ DSR VF+RM++ N+MSWTA+ITGYV SG +D EAI++Y +MI++ V PN  TFSSLLKACGNL++   GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+K+L+S EAF++F+ + D+E+ VD FT+ASLLSGAASVGAVGKGEQ+HAR+LK+G +SNQ + NALISMYS+CGNI AA+QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML  G+KPN+VTY+AVLSACSH GL+DEGWK+F++M K HGI P+MEHYAC+VDLLGR G LE AVQFI+S+P   D LVWRTLLGAC VH N ++GKYA+EMIL+Q+P+DPAAHVLLSNLYAS+ QW+ V +IRK MK++ +VKE GCSWIE  N+VHKFYVGDT HP+A++IY +L ++A+KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST K KPIRIFKNLR+CGDCH AMK+IS+A GR+I++RDSNRFHH  DG CSCN+YW
Sbjct:  149 MELESVFTFFDMVEFGEYPNQFCFSAVIQACCSAELGWVGLAIFGFVIKTGYFESDICVGCALIDLFAKGFSDLRSAKKVFDRMPERNLVTWTLMITRFSQLGASKDAVRLFLEMVSEGFVPDRFTFSGVLSACAEPGLSLLGRQLHGGVIKSRLSADVCVGCSLVDMYAKSTMDGSMDDSRKVFDRMADHNVMSWTAIITGYVQSGHYDMEAIKLYCRMIDNPVKPNHFTFSSLLKACGNLSNPAIGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKSLDSAEAFELFSHL-DSEVEVDTFTFASLLSGAASVGAVGKGEQIHARVLKAGIQSNQSVSNALISMYSRCGNIEAAFQVFEGMEDRNVISWTSIITGFAKHGFAHRAVELFNQMLEDGIKPNEVTYIAVLSACSHVGLVDEGWKYFDSMSKNHGITPRMEHYACMVDLLGRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVHGNLQLGKYASEMILEQEPNDPAAHVLLSNLYASRRQWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHKFYVGDTKHPKAKEIYEKLGKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTCKQKPIRIFKNLRVCGDCHNAMKFISVAEGREIIIRDSNRFHHIKDGLCSCNDYW 849    

HSP 2 Score: 239.195 bits (609), Expect = 2.173e-65
Identity = 147/497 (29.58%), Postives = 274/497 (55.13%), Query Frame = 0
 
Query:    3 RESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPE-RNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGC--AELGWLDVGKQLHSLVVKSG-LSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARS---GSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSD-EAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESM 491
            ++++     + + G  P+   ++ ++ +C    N   G  +    +     E D  +  +LI L++K +   + A  +F+ M E R+ V+W+ MI+ YA  G   +++  F  MVE G   ++F FS+VI  C  AELGW  VG  +   V+K+G   +D+CVGC+L+D++AK    L  ++ VF+RM E+N+++WT MIT +   G   ++A+ ++++M+    +P+  TFS +L AC     +  G Q++   +K   S+  CVG SLV MYA+S   GS++D++K F+ + + N++S+  ++  Y ++ + D EA  ++ ++ D  +  + FT++SLL    ++     GEQ++   +K G  S   + N+LISMY+K G +  A + F+ + ++N++S+  I+ G++K   +  A E+F   L + V+ +  T+ ++LS  +  G + +G +    + K  GI         ++ +  R G +E+A Q  E M
Sbjct:   49 KQAISTLDHISQMGFTPDLTSYTVLLKSCIRTRNFQFG-QLLHSKLNDSPLEPDTILLNSLISLYSK-MGSWETAEKIFESMGEKRDLVSWSAMISCYAHCGMELESVFTFFDMVEFGEYPNQFCFSAVIQACCSAELGW--VGLAIFGFVIKTGYFESDICVGCALIDLFAKGFSDLRSAKKVFDRMPERNLVTWTLMITRFSQLGA-SKDAVRLFLEMVSEGFVPDRFTFSGVLSACAEPGLSLLGRQLHGGVIKSRLSADVCVGCSLVDMYAKSTMDGSMDDSRKVFDRMADHNVMSWTAIITGYVQSGHYDMEAIKLYCRMIDNPVKPNHFTFSSLLKACGNLSNPAIGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKSLDSAEAFELFSH-LDSEVEVDTFTFASLLSGAASVGAVGKGEQIHARVLKA-GIQSNQSVSNALISMYSRCGNIEAAFQVFEGM 538    

HSP 3 Score: 166.392 bits (420), Expect = 2.428e-40
Identity = 154/578 (26.64%), Postives = 282/578 (48.79%), Query Frame = 0
 
Query:   83 RMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQ-NIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLG-FSSVNCVGNSLVSMYARSGS-IEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKC---GNIVAAYQVFDDMEDRNVISWTSIITGFAKHG-LAKRAREMFEQMLLAGVKPNDVTYVAVLSAC-------------SHA----------------------GLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQF-----IESMPYTADPLVWRTLL-GACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSW--IETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYI 610
            R P+  A+  TL+  R A +G    A+     + + GF  D  +++ ++  C        G+ LHS +  S L  D  +  SL+ +Y+K  GS   +  +F  M E+ +++SW+AMI+ Y    G + E++  +  M+E    PN+  FS++++AC +      G  I+   +K G F S  CVG +L+ ++A+  S +  A+K F+ + E+NL+++ +++  +++   S +A  +F ++       D FT++ +LS  A  G    G QLH  ++KS   ++  +  +L+ MY+K    G++  + +VFD M D NV+SWT+IITG+ + G     A +++ +M+   VKPN  T+ ++L AC             +HA                      G M+E  K F  +++++ ++     Y  IVD  G    L+SA  F     ++S     D   + +LL GA  V    +  +  A ++     S+ +    L ++Y+     +   ++ +GM+ RNV+     SW  I TG   H F     +H +A +++ Q+ +  +K  ++ YI
Sbjct:   28 RNPDFEALKDTLI--RQANVGNLKQAISTLDHISQMGFTPDLTSYTVLLKSCIRTRNFQFGQLLHSKLNDSPLEPDTILLNSLISLYSKM-GSWETAEKIFESMGEKRDLVSWSAMISCYA-HCGMELESVFTFFDMVEFGEYPNQFCFSAVIQACCSAELGWVGLAIFGFVIKTGYFESDICVGCALIDLFAKGFSDLRSAKKVFDRMPERNLVTWTLMITRFSQLGASKDAVRLFLEMVSEGFVPDRFTFSGVLSACAEPGLSLLGRQLHGGVIKSRLSADVCVGCSLVDMYAKSTMDGSMDDSRKVFDRMADHNVMSWTAIITGYVQSGHYDMEAIKLYCRMIDNPVKPNHFTFSSLLKACGNLSNPAIGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVS-----YNIIVD--GYSKSLDSAEAFELFSHLDS-EVEVDTFTFASLLSGAASVGAVGKGEQIHARVLKAGIQSNQSVSNALISMYSRCGNIEAAFQVFEGMEDRNVI-----SWTSIITGFAKHGF-----AH-RAVELFNQMLEDGIKPNEVTYI 582    
BLAST of XM_017403431.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022QB61 (DYW_deaminase domain-containing protein {ECO:0000259|Pfam:PF14432})

HSP 1 Score: 1048.5 bits (2710), Expect = 0.000e+0
Identity = 482/700 (68.86%), Postives = 596/700 (85.14%), Query Frame = 0
 
Query:    4 ESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSG--GSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMI-ESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 700
            ++V +FV+M++ GE PN+FCFS  I AC +R N  +GL IFGF++KTGYF +D+CVGCA++DLF KG  D++LA+ VFD MPE+N+VTWTLMITR+ QMG   DA+ LF  MV  GFV DRFTFSS +S C+ELG L +G+QLHS VVK+GL  DVCVGCSL+DMYAKS   GS+ DSR  F+RMS QN+MSWTA+ITGYV +GG D EAIE+Y +MI + RV PN  TF+ LLKACGNL + K GEQIYS+A KLG ++V+ VGNSL+SMY++   IEDA+KAFE LFEKNL+SYN LVD Y +NL+SDEAF++FN+IE++  G DAFT+ASLLSGAASVGAVGKGEQ+HARLLK+GFESN  I NALISMY++CG+I A +QVF++MEDRN+ISWTSIITGFAKHG AKRA E+++QML +GV+PN+VT+VAVLSACSHAGL++EGW+ F++MYK+HGI P+MEHYAC++D+LGR G+L+ A+QFI SMP+ AD LVWRTLLGAC VH N E+GK+AAEMIL++DP+DP+AHVLLSNLYAS  QW+ V+ IRKGMK+RN+VKE GCSWIE  N VHKFYVGDT HP+A++IY +LD++A KIK++GY+PDTNFVLH V EEQKEQYLFQHSEKIA+A+GLISTAK + IRIFKNLR+CGDCHT +KY+S+A+GR+IVVRDSNRFHH  DG CSCN+YW
Sbjct:   95 DAVLVFVEMLEYGEHPNEFCFSAAIRACSNRENARIGLEIFGFLLKTGYFGSDVCVGCAMVDLFVKGFGDLELAKKVFDEMPEKNSVTWTLMITRFTQMGSPRDAIGLFSDMVIAGFVPDRFTFSSCLSACSELGSLSIGRQLHSWVVKNGLCFDVCVGCSLVDMYAKSAMDGSMDDSRKTFDRMSNQNVMSWTAIITGYVQNGGNDYEAIELYCRMITQGRVKPNHFTFACLLKACGNLFNPKLGEQIYSHATKLGLATVSVVGNSLISMYSKCDRIEDARKAFEFLFEKNLVSYNALVDGYTRNLDSDEAFELFNEIENSSAGADAFTFASLLSGAASVGAVGKGEQIHARLLKAGFESNLCICNALISMYTRCGSIEAGFQVFNEMEDRNIISWTSIITGFAKHGFAKRALELYKQMLDSGVEPNEVTFVAVLSACSHAGLIEEGWRQFDSMYKDHGIRPRMEHYACMIDILGRSGHLDKAIQFINSMPFAADALVWRTLLGACRVHGNMELGKHAAEMILEKDPNDPSAHVLLSNLYASAGQWESVSRIRKGMKERNMVKEAGCSWIEIANKVHKFYVGDTKHPEAKEIYEELDEVAAKIKEMGYVPDTNFVLHEVEEEQKEQYLFQHSEKIALAYGLISTAKSRMIRIFKNLRVCGDCHTMIKYVSVASGREIVVRDSNRFHHIKDGKCSCNDYW 794    

HSP 2 Score: 223.787 bits (569), Expect = 3.591e-60
Identity = 141/487 (28.95%), Postives = 263/487 (54.00%), Query Frame = 0
 
Query:   12 MIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMP-ERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSG-LSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARS---GSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSD-EAFDIF-NQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESM 491
            M ++   P+   +S ++ +C    N ++G  +   +I++   + D  V  +LI L++K     + A  +F  M   R+ V+W+ MI+ YA  G + DA+ +F+ M+E G   + F FS+ I  C+      +G ++   ++K+G   +DVCVGC+++D++ K  G L  ++ VF+ M E+N ++WT MIT +   G   R+AI ++  M+ +  +P+  TFSS L AC  L     G Q++S  VK G     CVG SLV MYA+S   GS++D++K F+ +  +N++S+  ++  Y +N  +D EA +++   I    +  + FT+A LL    ++     GEQ+++   K G  +   + N+LISMYSKC  I  A + F+ + ++N++S+ +++ G+ ++  +  A E+F ++  +    +  T+ ++LS  +  G + +G +    + K  G    +     ++ +  R G +E+  Q    M
Sbjct:    1 MSRANLAPDLATYSVLLKSCIRTRNFELGQLVHSRLIES-RLQPDAVVLNSLISLYSK-CGHWRKAEEIFSSMGGARDMVSWSAMISCYAHNGLNLDAVLVFVEMLEYGEHPNEFCFSAAIRACSNRENARIGLEIFGFLLKTGYFGSDVCVGCAMVDLFVKGFGDLELAKKVFDEMPEKNSVTWTLMITRFTQMGS-PRDAIGLFSDMVIAGFVPDRFTFSSCLSACSELGSLSIGRQLHSWVVKNGLCFDVCVGCSLVDMYAKSAMDGSMDDSRKTFDRMSNQNVMSWTAIITGYVQNGGNDYEAIELYCRMITQGRVKPNHFTFACLLKACGNLFNPKLGEQIYSHATKLGLATVSVVGNSLISMYSKCDRIEDARKAFEFLFEKNLVSYNALVDGYTRNLDSDEAFELFNEIENSSAGADAFTFASLLSGAASVGAVGKGEQIHARLLKA-GFESNLCICNALISMYTRCGSIEAGFQVFNEM 483    

HSP 3 Score: 218.009 bits (554), Expect = 4.079e-58
Identity = 137/444 (30.86%), Postives = 241/444 (54.28%), Query Frame = 0
 
Query:    3 RESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSD--MKLARVVFDRMPERNAVTWTLMITRYAQMGFSG-DALELFLSMVENGFV-ADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKG-EQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDME-DRNVISWTSIITGFAKHG---LAKRAREMFEQMLLAGVKPNDVTYVAVLS 437
            R+++ +F DM+ +G  P++F FS  + AC   G++ +G  +  +V+K G    D+CVGC+L+D++AK   D  M  +R  FDRM  +N ++WT +IT Y Q G +  +A+EL+  M+  G V  + FTF+ ++  C  L    +G+Q++S   K GL+T   VG SL+ MY+K    + D+R  F  + E+N++S+ A++ GY  +   D EA E++ ++  S    +  TF+SLL    ++     GEQI++  +K GF S  C+ N+L+SMY R GSIE   + F  + ++N+IS+  ++  +AK+  +  A +++ Q+ D+ +  +  T+ ++LS  +  G + +G  Q  +     G          +I +  + G++  A Q  + M    + + W +++     HG   L K A EM  +       PND +   +LS
Sbjct:  197 RDAIGLFSDMVIAGFVPDRFTFSSCLSACSELGSLSIGRQLHSWVVKNG-LCFDVCVGCSLVDMYAKSAMDGSMDDSRKTFDRMSNQNVMSWTAIITGYVQNGGNDYEAIELYCRMITQGRVKPNHFTFACLLKACGNLFNPKLGEQIYSHATKLGLATVSVVGNSLISMYSKC-DRIEDARKAFEFLFEKNLVSYNALVDGYTRNLDSD-EAFELFNEIENSSAGADAFTFASLLSGAASVGAVGKGEQIHARLLKAGFESNLCICNALISMYTRCGSIEAGFQVFNEMEDRNIISWTSIITGFAKHGFAKRALELYKQMLDSGVEPNEVTFVAVLSACSHAGLIEEGWRQFDSMYKDHGIRPRMEHYACMIDILGRSGHLDKAIQFINSMPFAADALVWRTLLGACRVHGNMELGKHAAEMILEK-----DPNDPSAHVLLS 632    
BLAST of XM_017403431.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2C1T5 (DYW_deaminase domain-containing protein {ECO:0000259|Pfam:PF14432})

HSP 1 Score: 1046.57 bits (2705), Expect = 0.000e+0
Identity = 489/702 (69.66%), Postives = 592/702 (84.33%), Query Frame = 0
 
Query:    1 MERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 700
            ME ESV  F DM++ GE PNQFCFS VI ACCS     VGL IFGF IKTGYFE+D+CVGCALIDLFAKG SD++ A+ VFDRMPERN VTWTLMITR++Q+G S DA+ LFL MV  GFV DRFTFS V+S CAE G   +G+QLH  V+KS LS DVCVGCSL+DMYAKS   GS+ DSR VF+RM++ N+MSWTA+ITGYV SG +D EAI++Y +MI+  V PN  TFS LLKACGNL+D   GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL SYNI+VD  +K+L+S EAF++F+ I D+E+GVDAFT+ASLLSGAASVGAVGKGEQ+H+R+LK+G +SNQ + NALISMYS+CGNI AA+QVF+ MEDRNVISWTSIITGFAKHG A RA E F QML  G+KPN+VTY+AVLSACSH GL+DEGWK+F++M  +HGI P+MEHYAC+VDLLGR G LE AVQFI+S+P   D LVWRTLLGAC VH N ++GKYA+EMIL+Q+P+DPAAHVLLSNLYAS+ QW+ V +IRK MK++ +VKE GCSWIE  N+VHKFYVGDT HP+A++IY +LD++ +KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I++RDSNRFHH  DG CSCN+YW
Sbjct:  144 MELESVFTFFDMVEFGEYPNQFCFSAVIQACCSAKLGWVGLAIFGFAIKTGYFESDVCVGCALIDLFAKGFSDLRSAKKVFDRMPERNLVTWTLMITRFSQLGASKDAVRLFLEMVSEGFVPDRFTFSGVLSACAEPGLSLLGRQLHGGVIKSRLSADVCVGCSLVDMYAKSTMDGSMDDSRKVFDRMADHNVMSWTAIITGYVQSGHYDMEAIKLYCRMIDGLVKPNHFTFSGLLKACGNLSDPAIGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLASYNIIVDECSKSLDSAEAFELFSHI-DSEVGVDAFTFASLLSGAASVGAVGKGEQIHSRVLKAGTQSNQSVSNALISMYSRCGNIEAAFQVFEGMEDRNVISWTSIITGFAKHGFAHRAVEFFNQMLEDGIKPNEVTYIAVLSACSHVGLVDEGWKYFDSMSIDHGITPRMEHYACMVDLLGRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVHGNLQLGKYASEMILEQEPNDPAAHVLLSNLYASRGQWEEVAKIRKDMKEKRMVKEAGCSWIEAENSVHKFYVGDTKHPKAKEIYEKLDKVVLKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTSKQKPIRIFKNLRVCGDCHNAMKFISVAEGREIIIRDSNRFHHIKDGLCSCNDYW 844    

HSP 2 Score: 222.246 bits (565), Expect = 1.828e-59
Identity = 142/497 (28.57%), Postives = 268/497 (53.92%), Query Frame = 0
 
Query:    3 RESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPE-RNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGC--AELGWLDVGKQLHSLVVKSG-LSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARS---GSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSD-EAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESM 491
            ++++     + + G  P+   ++ ++ +C    N  +G  +    +     + D  V  +LI L +K +   + A  +F+ M E R+ V+W+ MI+ YA  G   +++  F  MVE G   ++F FS+VI  C  A+LGW  VG  +    +K+G   +DVCVGC+L+D++AK    L  ++ VF+RM E+N+++WT MIT +   G   ++A+ ++++M+    +P+  TFS +L AC     +  G Q++   +K   S+  CVG SLV MYA+S   GS++D++K F+ + + N++S+  ++  Y ++ + D EA  ++ ++ D  +  + FT++ LL    ++     GEQ++   +K G  S   + N+LISMY+K G +  A + F+ + ++N+ S+  I+   +K   +  A E+F   + + V  +  T+ ++LS  +  G + +G +  + + K  G          ++ +  R G +E+A Q  E M
Sbjct:   44 KQAISTLDHISQMGFTPDLTSYTVLLKSCIRTRNFQIG-QLLHSKLNDSPLQPDTIVLNSLISLHSK-MGSWETAEKIFESMGEKRDLVSWSAMISCYAHCGMELESVFTFFDMVEFGEYPNQFCFSAVIQACCSAKLGW--VGLAIFGFAIKTGYFESDVCVGCALIDLFAKGFSDLRSAKKVFDRMPERNLVTWTLMITRFSQLGA-SKDAVRLFLEMVSEGFVPDRFTFSGVLSACAEPGLSLLGRQLHGGVIKSRLSADVCVGCSLVDMYAKSTMDGSMDDSRKVFDRMADHNVMSWTAIITGYVQSGHYDMEAIKLYCRMIDGLVKPNHFTFSGLLKACGNLSDPAIGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLASYNIIVDECSKSLDSAEAFELFSH-IDSEVGVDAFTFASLLSGAASVGAVGKGEQIHSRVLKA-GTQSNQSVSNALISMYSRCGNIEAAFQVFEGM 533    

HSP 3 Score: 167.548 bits (423), Expect = 1.253e-40
Identity = 154/578 (26.64%), Postives = 281/578 (48.62%), Query Frame = 0
 
Query:   83 RMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQ-NIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLG-FSSVNCVGNSLVSMYARSGS-IEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKC---GNIVAAYQVFDDMEDRNVISWTSIITGFAKHG-LAKRAREMFEQMLLAGVKPNDVTYVAVLSAC-------------SHA----------------------GLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQF-----IESMPYTADPLVWRTLL-GACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSW--IETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYI 610
            R P+  A+  TL+  R A +G    A+     + + GF  D  +++ ++  C       +G+ LHS +  S L  D  V  SL+ +++K  GS   +  +F  M E+ +++SW+AMI+ Y    G + E++  +  M+E    PN+  FS++++AC +      G  I+  A+K G F S  CVG +L+ ++A+  S +  A+K F+ + E+NL+++ +++  +++   S +A  +F ++       D FT++ +LS  A  G    G QLH  ++KS   ++  +  +L+ MY+K    G++  + +VFD M D NV+SWT+IITG+ + G     A +++ +M+   VKPN  T+  +L AC             +HA                      G M+E  K F  +++++     +  Y  IVD   +   L+SA  F     I+S     D   + +LL GA  V    +  +  + ++     S+ +    L ++Y+     +   ++ +GM+ RNV+     SW  I TG   H F     +H +A + + Q+ +  +K  ++ YI
Sbjct:   23 RNPDFEALKDTLI--RQANVGNLKQAISTLDHISQMGFTPDLTSYTVLLKSCIRTRNFQIGQLLHSKLNDSPLQPDTIVLNSLISLHSKM-GSWETAEKIFESMGEKRDLVSWSAMISCYA-HCGMELESVFTFFDMVEFGEYPNQFCFSAVIQACCSAKLGWVGLAIFGFAIKTGYFESDVCVGCALIDLFAKGFSDLRSAKKVFDRMPERNLVTWTLMITRFSQLGASKDAVRLFLEMVSEGFVPDRFTFSGVLSACAEPGLSLLGRQLHGGVIKSRLSADVCVGCSLVDMYAKSTMDGSMDDSRKVFDRMADHNVMSWTAIITGYVQSGHYDMEAIKLYCRMIDGLVKPNHFTFSGLLKACGNLSDPAIGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKN-----LASYNIIVDECSK--SLDSAEAFELFSHIDS-EVGVDAFTFASLLSGAASVGAVGKGEQIHSRVLKAGTQSNQSVSNALISMYSRCGNIEAAFQVFEGMEDRNVI-----SWTSIITGFAKHGF-----AH-RAVEFFNQMLEDGIKPNEVTYI 577    
BLAST of XM_017403431.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3YXQ0 ((pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like isoform X1 {ECO:0000313|RefSeq:XP_016457116.1}))

HSP 1 Score: 1041.57 bits (2692), Expect = 0.000e+0
Identity = 485/702 (69.09%), Postives = 595/702 (84.76%), Query Frame = 0
 
Query:    1 MERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 700
            ME E+V  F DM++ GE PNQFCFS VI ACCS     +GL IFGFV+KTGYFE+D+CVGCALIDLFAKG  D++ A+ VFDRMPERN VTWTLMITR++Q+G   DA+ LFL MV  GFV DRFTFS V+S CA+LG    G+QLH  VVKS LS+DVCVGCSL+DMYAK    GS+ DSR VF++M++ N+MSWTA+ITGYV SG +D EAI++Y +MIE  V PN  TFSSLLKACGNL++   GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+KNL+S EAF++F+QI D+E+G+DAFT+ASLLSGAAS+GAVGKGEQ+HAR+LK+G  SNQ + NALISMYS+CGNI AA QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML AG+KPN++TY+AVLSACSH GL++EGWK+F++M  +H I P+MEHYAC+VDLL R G LE AVQFI+S+P   D LVWRTLLGAC V+ N ++GKYAAEMIL+Q+PSDPAAHVLLSNLYAS+ +W+ V +IRK MK++ +VKE GCSWIE  N+VH+FYVGDT+HP+A++IY +LD++A+KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I+VRDSNRFHH  DG CSCN+YW
Sbjct:  149 MELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGVFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQLGLSLFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSTEAFELFSQI-DSEVGIDAFTFASLLSGAASIGAVGKGEQIHARVLKAGIHSNQSVCNALISMYSRCGNIEAASQVFERMEDRNVISWTSIITGFAKHGFAYRALELFNQMLGAGIKPNEITYIAVLSACSHVGLVEEGWKYFDSMSSDHRITPRMEHYACMVDLLSRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVYGNLQLGKYAAEMILEQEPSDPAAHVLLSNLYASRGEWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHRFYVGDTNHPRAKEIYEKLDKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTSKSKPIRIFKNLRVCGDCHNAMKFISVAEGREIIVRDSNRFHHIKDGLCSCNDYW 849    

HSP 2 Score: 239.965 bits (611), Expect = 9.616e-66
Identity = 150/497 (30.18%), Postives = 277/497 (55.73%), Query Frame = 0
 
Query:    3 RESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPE-RNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAE--LGWLDVGKQLHSLVVKSG-LSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYAR---SGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSD-EAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESM 491
            ++++     + + G  P+   ++ ++ +C    N  +G  +    +     E D  V  +LI L+AK + D + A+++F+ M E R+ V+W+ MI+ +A  G   +A+  F  MVE G   ++F FS+VI  C     GW  +G  +   VVK+G   +D+CVGC+L+D++AK    L  ++ VF+RM E+N+++WT MIT +   G  DR+A+ ++++M+    +P+  TFS +L AC  L  +  G Q++   VK   SS  CVG SLV MYA+    GS+ D++K F+ + + N++S+  ++  Y ++   D EA  ++ ++ +  +  + FT++SLL    ++  +  GEQ++   +K G  S   + N+LISMY+K G +  A + F+ + ++N++S+  I+ G++K+  +  A E+F Q + + V  +  T+ ++LS  +  G + +G +    + K  GI+        ++ +  R G +E+A Q  E M
Sbjct:   49 KQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLG-ELLHSKLNNSSLEPDTIVLNSLISLYAK-MGDWETAKMIFENMGEKRDLVSWSAMISCFAHCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGVFGW--IGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGA-DRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQLGLSLFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSTEAFELFSQ-IDSEVGIDAFTFASLLSGAASIGAVGKGEQIHARVLKA-GIHSNQSVCNALISMYSRCGNIEAASQVFERM 538    

HSP 3 Score: 166.777 bits (421), Expect = 2.298e-40
Identity = 121/438 (27.63%), Postives = 225/438 (51.37%), Query Frame = 0
 
Query:   63 LIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQ-NIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLG-FSSVNCVGNSLVSMYARS-GSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKC---GNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAK-RAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACI----VDLLGRLGYLESAVQFIE 489
            LI    K L+ +++ R    R P   A+   L+  R A +G    A+     + + G   D  +++ ++  C       +G+ LHS +  S L  D  V  SL+ +YAK  G    ++ +F  M E+ +++SW+AMI+ +    G + EA+  +  M+E    PN+  FS++++AC +      G  I+   VK G F S  CVG +L+ ++A+    +  A++ F+ + E+NL+++ +++  +++     +A  +F ++       D FT++ +LS  A +G    G QLH  ++KS   S+  +  +L+ MY+KC   G++  + +VFD M D NV+SWT+IITG+ + G     A +++ +M+   VKPN  T+ ++L AC +   +  G + +N     H +   +    C+    + +  + G +E A +  E
Sbjct:   12 LIPPSPKNLTSLQIHR----RNPNFEALKDRLI--RQANVGNLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNNSSLEPDTIVLNSLISLYAKM-GDWETAKMIFENMGEKRDLVSWSAMISCFA-HCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGVFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQLGLSLFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYN-----HAVKLGLASVNCVANSLISMYAKSGRMEEARKAFE 436    

HSP 4 Score: 75.0998 bits (183), Expect = 3.165e-11
Identity = 54/188 (28.72%), Postives = 87/188 (46.28%), Query Frame = 0
 
Query:  308 NSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDM-EDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGY--LESAVQFIESMP 492
            N  +A    + I    +  D  +Y  LL           GE LH++L  S  E +  + N+LIS+Y+K G+   A  +F++M E R+++SW+++I+ FA  G+   A   F  M+  G  PN   + AV+ AC        G   F  + K       +     ++DL  + G+  L SA Q  + MP
Sbjct:   47 NLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNNSSLEPDTIVLNSLISLYAKMGDWETAKMIFENMGEKRDLVSWSAMISCFAHCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGVFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAK-GFCDLRSAKQVFDRMP 233    
BLAST of XM_017403431.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7V352 ((pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X1 {ECO:0000313|RefSeq:XP_009760813.1}))

HSP 1 Score: 1041.18 bits (2691), Expect = 0.000e+0
Identity = 483/702 (68.80%), Postives = 595/702 (84.76%), Query Frame = 0
 
Query:    1 MERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 700
            ME E+V  F DM++ GE PNQFCFS VI ACCS     +GL IFGFV+KTGYFE+D+CVGCALIDLFAKG  D++ A+ VFDRMPERN VTWTLMITR++Q+G   DA+ LFL MV  GFV DRFTFS V+S CA++G    G+QLH  VVKS LS+DVCVGCSL+DMYAK    GS+ DSR VF++M++ N+MSWTA+ITGYV SG +D EAI++Y +MIE  V PN  TFSSLLKACGNL++   GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+KNL+S EAF++F+QI D+E+G+DAFT+ASLLSGAAS+GAVGKGEQ+HAR+LK+G  SNQ + NALISMYS+CGNI AA QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML AG+KPN++TY+AVLSACSH GL++EGWK+F++M  +H I P+MEHYAC+VDLL R G LE AVQFI+S+P   D LVWRTLLGAC V+ N ++GKYAAEMIL+Q+P+DPAAHVLLSNLYAS+ +W+ V +IRK MK++ +VKE GCSWIE  N+VH+FYVGDT+HP+A++IY +LD++A+KIK++GY+P+T+ VLH V +EQKEQYLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I+VRDSNRFHH  DG CSCN+YW
Sbjct:  149 MELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGEFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQMGLSSFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSTEAFELFSQI-DSEVGIDAFTFASLLSGAASIGAVGKGEQIHARVLKAGIHSNQSVCNALISMYSRCGNIEAASQVFERMEDRNVISWTSIITGFAKHGFAYRALELFNQMLGAGIKPNEITYIAVLSACSHVGLVEEGWKYFDSMSSDHRITPRMEHYACMVDLLSRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVYGNLQLGKYAAEMILEQEPNDPAAHVLLSNLYASRGEWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHRFYVGDTNHPRAKEIYEKLDKVALKIKEIGYVPNTDLVLHEVEDEQKEQYLFQHSEKIALAFGLISTSKSKPIRIFKNLRVCGDCHNAMKFISVAEGREIIVRDSNRFHHIKDGLCSCNDYW 849    

HSP 2 Score: 242.276 bits (617), Expect = 1.479e-66
Identity = 150/497 (30.18%), Postives = 278/497 (55.94%), Query Frame = 0
 
Query:    3 RESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPE-RNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGC--AELGWLDVGKQLHSLVVKSG-LSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYAR---SGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSD-EAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESM 491
            ++++     + + G  P+   ++ ++ +C    N  +G  +    +     E D  V  +LI L+AK + D + A+++F+ M E R+ V+W+ MI+ +A  G   +A+  F  MVE G   ++F FS+VI  C   E GW  +G  +   VVK+G   +D+CVGC+L+D++AK    L  ++ VF+RM E+N+++WT MIT +   G  DR+A+ ++++M+    +P+  TFS +L AC  +  +  G Q++   VK   SS  CVG SLV MYA+    GS+ D++K F+ + + N++S+  ++  Y ++   D EA  ++ ++ +  +  + FT++SLL    ++  +  GEQ++   +K G  S   + N+LISMY+K G +  A + F+ + ++N++S+  I+ G++K+  +  A E+F Q + + V  +  T+ ++LS  +  G + +G +    + K  GI+        ++ +  R G +E+A Q  E M
Sbjct:   49 KQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLG-ELLHSKLNNSSLEPDTIVLNSLISLYAK-MGDWETAKMIFENMGEKRDLVSWSAMISCFAHCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGEFGW--IGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGA-DRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQMGLSSFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSTEAFELFSQ-IDSEVGIDAFTFASLLSGAASIGAVGKGEQIHARVLKA-GIHSNQSVCNALISMYSRCGNIEAASQVFERM 538    

HSP 3 Score: 167.548 bits (423), Expect = 1.166e-40
Identity = 121/438 (27.63%), Postives = 225/438 (51.37%), Query Frame = 0
 
Query:   63 LIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQ-NIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLG-FSSVNCVGNSLVSMYARS-GSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKC---GNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAK-RAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACI----VDLLGRLGYLESAVQFIE 489
            LI    K L+ +++ R    R P   A+   L+  R A +G    A+     + + G   D  +++ ++  C       +G+ LHS +  S L  D  V  SL+ +YAK  G    ++ +F  M E+ +++SW+AMI+ +    G + EA+  +  M+E    PN+  FS++++AC +      G  I+   VK G F S  CVG +L+ ++A+    +  A++ F+ + E+NL+++ +++  +++     +A  +F ++       D FT++ +LS  A +G    G QLH  ++KS   S+  +  +L+ MY+KC   G++  + +VFD M D NV+SWT+IITG+ + G     A +++ +M+   VKPN  T+ ++L AC +   +  G + +N     H +   +    C+    + +  + G +E A +  E
Sbjct:   12 LIPPSPKNLTSLQIHR----RNPNFEALKDRLI--RQANVGNLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNNSSLEPDTIVLNSLISLYAKM-GDWETAKMIFENMGEKRDLVSWSAMISCFA-HCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGEFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACAQMGLSSFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNLAVGEQIYN-----HAVKLGLASVNCVANSLISMYAKSGRMEEARKAFE 436    

HSP 4 Score: 75.0998 bits (183), Expect = 2.488e-11
Identity = 54/188 (28.72%), Postives = 87/188 (46.28%), Query Frame = 0
 
Query:  308 NSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDM-EDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGY--LESAVQFIESMP 492
            N  +A    + I    +  D  +Y  LL           GE LH++L  S  E +  + N+LIS+Y+K G+   A  +F++M E R+++SW+++I+ FA  G+   A   F  M+  G  PN   + AV+ AC        G   F  + K       +     ++DL  + G+  L SA Q  + MP
Sbjct:   47 NLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNNSSLEPDTIVLNSLISLYAKMGDWETAKMIFENMGEKRDLVSWSAMISCFAHCGMELEAVLTFFDMVEFGEYPNQFCFSAVIQACCSGEFGWIGLVIFGFVVKTGYFESDICVGCALIDLFAK-GFCDLRSAKQVFDRMP 233    
BLAST of XM_017403431.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314L350 ((Pentatricopeptide repeat-containing protein, chloroplastic {ECO:0000313|EMBL:OIT35439.1}))

HSP 1 Score: 1039.64 bits (2687), Expect = 0.000e+0
Identity = 484/702 (68.95%), Postives = 592/702 (84.33%), Query Frame = 0
 
Query:    1 MERESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKS--GGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYARSGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESMPYTADPLVWRTLLGACHVHRNTEIGKYAAEMILKQDPSDPAAHVLLSNLYASKSQWDHVTEIRKGMKQRNVVKEVGCSWIETGNTVHKFYVGDTSHPQARDIYGQLDQLAVKIKKLGYIPDTNFVLHNVVEEQKEQYLFQHSEKIAVAFGLISTAKPKPIRIFKNLRICGDCHTAMKYISLATGRDIVVRDSNRFHHFVDGSCSCNEYW 700
            ME E+V  F DM++ GE PNQFCFS VI ACCS     +GL IFGFV+K GYFE+D+CVGCALIDLFAKG  D++ A+ VFDRMPERN VTWTLMITR++Q+G   DA+ LFL MV  GFV DRFTFS V+S C +LG    G+QLH  VVKS LS+DVCVGCSL+DMYAK    GS+ DSR VF++M++ N+MSWTA+ITGYV SG +D EAI++Y +MIE  V PN  TFSSLLKACGNL++   GEQIY++AVKLG +SVNCV NSL+SMYA+SG +E+A+KAFE+LFEKNL+SYNI+VD Y+KNL+S EAF++F+QI D+E+GVDAFT+ASLLSGAAS+GAVGKGEQ+HAR+LK+G + NQ + NALISMYS+CGNI AA QVF+ MEDRNVISWTSIITGFAKHG A RA E+F QML AG+KPN++TY+AVLSACSH GL++EGWK+F++M K+H I P+MEHYAC+VDLL R G LE AVQFI+S+P   D LVWRTLLGAC VH N ++GKYAAEMIL+Q+P+DPAAHVLLSNLYAS+ QW+ V +IRK MK++ +VKE GCSWIE  N+VH+FYVGDT+HP+A++IY +LD++AVKIK++GY+P+T+ VLH V +EQKE YLFQHSEKIA+AFGLIST+K KPIRIFKNLR+CGDCH AMK+IS+A GR+I+VRDSNRFHH  DG CSC +YW
Sbjct:  149 MELEAVFTFFDMVEFGEYPNQFCFSAVIQACCSGEFGWIGLVIFGFVVKNGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACTQLGLSSFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNPAIGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSAEAFELFSQI-DSEVGVDAFTFASLLSGAASIGAVGKGEQIHARVLKAGIQFNQSVCNALISMYSRCGNIEAASQVFERMEDRNVISWTSIITGFAKHGFAHRALELFNQMLGAGIKPNEITYIAVLSACSHVGLVEEGWKYFDSMSKDHRITPRMEHYACMVDLLSRSGSLEKAVQFIKSLPLNVDALVWRTLLGACQVHGNLQLGKYAAEMILEQEPNDPAAHVLLSNLYASRGQWEEVAKIRKDMKEKRLVKEAGCSWIEAENSVHRFYVGDTNHPRAKEIYEKLDKVAVKIKEIGYVPNTDLVLHEVEDEQKEHYLFQHSEKIALAFGLISTSKSKPIRIFKNLRVCGDCHNAMKFISVAEGREIIVRDSNRFHHIKDGLCSCKDYW 849    

HSP 2 Score: 236.884 bits (603), Expect = 1.492e-64
Identity = 150/497 (30.18%), Postives = 275/497 (55.33%), Query Frame = 0
 
Query:    3 RESVCMFVDMIKSGERPNQFCFSGVIHACCSRGNVDVGLGIFGFVIKTGYFEADLCVGCALIDLFAKGLSDMKLARVVFDRMPE-RNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGC--AELGWLDVGKQLHSLVVKSG-LSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQNIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLGFSSVNCVGNSLVSMYAR---SGSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSD-EAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGYLESAVQFIESM 491
            ++++     + + G  P+   ++ ++ +C    N  +G  +    +     E D  V  +LI L+AK + + + A+ +F+ M E R+ V+W+ MI+ +A  G   +A+  F  MVE G   ++F FS+VI  C   E GW  +G  +   VVK+G   +D+CVGC+L+D++AK    L  ++ VF+RM E+N+++WT MIT +   G  DR+A+ ++++M+    +P+  TFS +L AC  L  +  G Q++   VK   SS  CVG SLV MYA+    GS+ D++K F+ + + N++S+  ++  Y ++   D EA  ++ ++ +  +  + FT++SLL    ++     GEQ++   +K G  S   + N+LISMY+K G +  A + F+ + ++N++S+  I+ G++K+  +  A E+F Q + + V  +  T+ ++LS  +  G + +G +    + K  GI         ++ +  R G +E+A Q  E M
Sbjct:   49 KQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLG-ELLHSKLNDSSLEPDTIVLNSLISLYAK-MGNWETAKKIFENMGEKRDLVSWSAMISCFAHCGMELEAVFTFFDMVEFGEYPNQFCFSAVIQACCSGEFGW--IGLVIFGFVVKNGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGA-DRDAVGLFLEMVSEGFVPDRFTFSGVLSACTQLGLSSFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNPAIGEQIYNHAVKLGLASVNCVANSLISMYAKSGRMEEARKAFELLFEKNLVSYNIIVDGYSKNLDSAEAFELFSQ-IDSEVGVDAFTFASLLSGAASIGAVGKGEQIHARVLKA-GIQFNQSVCNALISMYSRCGNIEAASQVFERM 538    

HSP 3 Score: 162.54 bits (410), Expect = 4.440e-39
Identity = 117/433 (27.02%), Postives = 223/433 (51.50%), Query Frame = 0
 
Query:   68 AKGLSDMKLARVVFDRMPERNAVTWTLMITRYAQMGFSGDALELFLSMVENGFVADRFTFSSVISGCAELGWLDVGKQLHSLVVKSGLSTDVCVGCSLLDMYAKSGGSLIDSRNVFNRMSEQ-NIMSWTAMITGYVLSGGFDREAIEMYIKMIESRVLPNEITFSSLLKACGNLADTKAGEQIYSNAVKLG-FSSVNCVGNSLVSMYARS-GSIEDAQKAFEILFEKNLISYNILVDAYAKNLNSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKC---GNIVAAYQVFDDMEDRNVISWTSIITGFAKHGLAK-RAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACI----VDLLGRLGYLESAVQFIE 489
            +K L+ +++ R    R P   A+   L+  R + +G    A+     + + G   D  +++ ++  C       +G+ LHS +  S L  D  V  SL+ +YAK G +   ++ +F  M E+ +++SW+AMI+ +    G + EA+  +  M+E    PN+  FS++++AC +      G  I+   VK G F S  CVG +L+ ++A+    +  A++ F+ + E+NL+++ +++  +++     +A  +F ++       D FT++ +LS    +G    G QLH  ++KS   S+  +  +L+ MY+KC   G++  + +VFD M D NV+SWT+IITG+ + G     A +++ +M+   VKPN  T+ ++L AC +      G + +N     H +   +    C+    + +  + G +E A +  E
Sbjct:   17 SKNLTSLQIHR----RNPNFEALKDRLI--RQSNVGNLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNDSSLEPDTIVLNSLISLYAKMG-NWETAKKIFENMGEKRDLVSWSAMISCFA-HCGMELEAVFTFFDMVEFGEYPNQFCFSAVIQACCSGEFGWIGLVIFGFVVKNGYFESDICVGCALIDLFAKGFCDLRSAKQVFDRMPERNLVTWTLMITRFSQLGADRDAVGLFLEMVSEGFVPDRFTFSGVLSACTQLGLSSFGRQLHGWVVKSRLSSDVCVGCSLVDMYAKCTMDGSMNDSRKVFDQMADHNVMSWTAIITGYVQSGCYDMEAIKLYCRMIEGPVKPNHFTFSSLLKACGNLSNPAIGEQIYN-----HAVKLGLASVNCVANSLISMYAKSGRMEEARKAFE 436    

HSP 4 Score: 77.411 bits (189), Expect = 4.855e-12
Identity = 55/188 (29.26%), Postives = 88/188 (46.81%), Query Frame = 0
 
Query:  308 NSDEAFDIFNQIEDTEIGVDAFTYASLLSGAASVGAVGKGEQLHARLLKSGFESNQFIRNALISMYSKCGNIVAAYQVFDDM-EDRNVISWTSIITGFAKHGLAKRAREMFEQMLLAGVKPNDVTYVAVLSACSHAGLMDEGWKHFNNMYKEHGINPKMEHYACIVDLLGRLGY--LESAVQFIESMP 492
            N  +A    + I    +  D  +Y  LL           GE LH++L  S  E +  + N+LIS+Y+K GN   A ++F++M E R+++SW+++I+ FA  G+   A   F  M+  G  PN   + AV+ AC        G   F  + K       +     ++DL  + G+  L SA Q  + MP
Sbjct:   47 NLKQAISTLDHISQMGLTPDLTSYTVLLKSCIRTRNFQLGELLHSKLNDSSLEPDTIVLNSLISLYAKMGNWETAKKIFENMGEKRDLVSWSAMISCFAHCGMELEAVFTFFDMVEFGEYPNQFCFSAVIQACCSGEFGWIGLVIFGFVVKNGYFESDICVGCALIDLFAK-GFCDLRSAKQVFDRMP 233    
Match NameStatsDescription
A0A7J7I2V1E-Value: 2.787e-61, PID: 70.66DYW_deaminase domain-containing protein {ECO:00002... [more]
A0A2R6Q961E-Value: 4.530e-66, PID: 70.51(Pentatricopeptide repeat-containing protein {ECO:... [more]
A0A7J0DCT2E-Value: 9.643e-66, PID: 70.37(Tetratricopeptide repeat (TPR)-like superfamily p... [more]
A0A6I9SZW0E-Value: 1.572e-60, PID: 69.42(pentatricopeptide repeat-containing protein At3g4... [more]
M1BPQ1E-Value: 2.173e-65, PID: 69.80(Pentatricopeptide repeat-containing protein, chlo... [more]
A0A022QB61E-Value: 3.591e-60, PID: 68.86DYW_deaminase domain-containing protein {ECO:00002... [more]
A0A6N2C1T5E-Value: 1.828e-59, PID: 69.66DYW_deaminase domain-containing protein {ECO:00002... [more]
A0A1S3YXQ0E-Value: 9.616e-66, PID: 69.09(pentatricopeptide repeat-containing protein At3g4... [more]
A0A1U7V352E-Value: 1.479e-66, PID: 68.80(pentatricopeptide repeat-containing protein At3g4... [more]
A0A314L350E-Value: 1.492e-64, PID: 68.95(Pentatricopeptide repeat-containing protein, chlo... [more]
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
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