MENNAGSKEISIGGALMFSEEEVRELSGFVICEDHVEITCGCTSHQYGDA
VATLRVFPNGDLQINCDCTPGCPEDKLSPAAFEKHSGRETARKWKNNIWV
IDNGEKVPVAKTVLLKYYNKTTKCGNKGSQNGRVGHRDEFVRCTVCSKRR
RFRLRNKEECQVYHNAFKDAKWKCSDTPYEKVACEDEEERKSRRVYRGCS
RSQTCKGCTSCVCFGCEVCRFSDCSCQICSDFTKNAKN
| Relationships |
|---|
| The polypeptide, XM_017399581.1, derives from mRNA, XM_017399581.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A5J5AAR4 (SAND domain-containing protein {ECO:0000259|PROSITE:PS50864})
HSP 1 Score: 355.525 bits (911), Expect = 5.220e-123
Identity = 170/240 (70.83%), Postives = 199/240 (82.92%), Query Frame = 0
Query: 1 MENNAGSKEISIGGALMFSEEEVRELSGFVICEDHVEITCGCTSHQYGDAVATLRVFPNGDLQINCDCTPGCPEDKLSPAAFEKHSGRETARKWKNNIWVIDNGEKVPVAKTVLLKYYNKTTKCGNKG--SQNGRVGHRDEFVRCTVCSKRRRFRLRNKEECQVYHNAFKDAKWKCSDTPYEKVACEDEEERKSRRVYRGCSRSQTCKGCTSCVCFGCEVCRFSDCSCQICSDFTKNAKN 238
MEN G + S A+MFS+EEVRE+SGF I +D+VE+TCGCTSH+YGDAV LRVF +GDL+I+C+CTPGC EDK++PAAFEKHSGRETARKWKNN+WVI NGEKVP+ KT LLK+YN+ +K GN S NGRV HRDEFVRCT C+K RRFRLR KEEC++YH+A D WKC+D Y+K+ CED+EER SRRVYRGCSRS TC GCTSCVCFGCE+CRFSDC CQ C DFT+NAKN
Sbjct: 1 MENGVGRE--SGAAAIMFSDEEVREISGFKIGDDYVEVTCGCTSHRYGDAVGRLRVFVSGDLEISCECTPGCQEDKMTPAAFEKHSGRETARKWKNNVWVIVNGEKVPLLKTSLLKFYNQASKNGNGSHRSHNGRVCHRDEFVRCTRCNKERRFRLRTKEECRIYHDALADVNWKCADMSYDKITCEDDEERASRRVYRGCSRSPTCIGCTSCVCFGCEICRFSDCGCQTCIDFTRNAKN 238
Match: A0A6N2M2I0 (SAND domain-containing protein {ECO:0000259|Pfam:PF01342})
HSP 1 Score: 355.525 bits (911), Expect = 8.873e-123
Identity = 165/225 (73.33%), Postives = 194/225 (86.22%), Query Frame = 0
Query: 15 ALMFSEEEVRELSGFVICEDHVEITCGCTSHQYGDAVATLRVFPNGDLQINCDCTPGCPEDKLSPAAFEKHSGRETARKWKNNIWVIDNGEKVPVAKTVLLKYYNKTTKCGNKG--SQNGRVGHRDEFVRCTVCSKRRRFRLRNKEECQVYHNAFKDAKWKCSDTPYEKVACEDEEERKSRRVYRGCSRSQTCKGCTSCVCFGCEVCRFSDCSCQICSDFTKNAK 237
L+FSEEE+RE+SG D++E+ CGCTSH+YGDAV LRVF NG+L+I C+CTPGC EDK++PAAFEKHSGRETARKWKNN+WVI NGEKVP+AKTVLLKYYN+T+K GN SQNGRV HRDEFVRC C+K RRFRLR KEECQ++H+A DA WKC+D PY+K+ C+D+EER SRRVYRGC+RS TCKGCTSCVCFGCE+CRFSDCSCQ C+DFT+NAK
Sbjct: 10 VLLFSEEELREMSGVKSGGDYIEVMCGCTSHRYGDAVGRLRVFINGELEITCECTPGCDEDKMTPAAFEKHSGRETARKWKNNVWVIVNGEKVPLAKTVLLKYYNQTSKNGNGSHRSQNGRVCHRDEFVRCNKCNKDRRFRLRTKEECQIHHDALADANWKCADMPYDKITCDDDEERASRRVYRGCTRSPTCKGCTSCVCFGCEICRFSDCSCQTCTDFTRNAK 234
Match: A0A836XZC5 ((Protein ULTRAPETALA {ECO:0000313|EMBL:KAG5233437.1}))
HSP 1 Score: 353.984 bits (907), Expect = 1.517e-122
Identity = 165/225 (73.33%), Postives = 194/225 (86.22%), Query Frame = 0
Query: 15 ALMFSEEEVRELSGFVICEDHVEITCGCTSHQYGDAVATLRVFPNGDLQINCDCTPGCPEDKLSPAAFEKHSGRETARKWKNNIWVIDNGEKVPVAKTVLLKYYNKTTKCGNKG--SQNGRVGHRDEFVRCTVCSKRRRFRLRNKEECQVYHNAFKDAKWKCSDTPYEKVACEDEEERKSRRVYRGCSRSQTCKGCTSCVCFGCEVCRFSDCSCQICSDFTKNAK 237
L+FSEEE+RE+SG D++E+ CGCTSH+YGDAV LRVF NG+L+I C+CTPGC EDK++PAAFEKHSGRETARKWKNN+WVI NGEKVP+AKTVLLKYYN+T+K GN SQNGRV HRDEFVRC C+K RRFRLR KEECQ++H+A DA WKC+D PY+K+ C+D+EER SRRVYRGC+RS TCKGCTSCVCFGCE+CRFSDCSCQ C+DFT+NAK
Sbjct: 10 VLLFSEEELREMSGVKSGGDYIEVMCGCTSHRYGDAVGRLRVFVNGELEITCECTPGCDEDKMTPAAFEKHSGRETARKWKNNVWVIVNGEKVPLAKTVLLKYYNQTSKNGNGSHRSQNGRVCHRDEFVRCNKCNKDRRFRLRTKEECQIHHDALADANWKCADMPYDKITCDDDEERASRRVYRGCTRSPTCKGCTSCVCFGCEICRFSDCSCQTCTDFTRNAK 234
Match: A0A6P3Z551 ((protein ULTRAPETALA 1-like {ECO:0000313|RefSeq:XP_015871960.1}))
HSP 1 Score: 353.214 bits (905), Expect = 4.166e-122
Identity = 163/227 (71.81%), Postives = 193/227 (85.02%), Query Frame = 0
Query: 14 GALMFSEEEVRELSGFVICEDHVEITCGCTSHQYGDAVATLRVFPNGDLQINCDCTPGCPEDKLSPAAFEKHSGRETARKWKNNIWVIDNGEKVPVAKTVLLKYYNKTTKCGNKG--SQNGRVGHRDEFVRCTVCSKRRRFRLRNKEECQVYHNAFKDAKWKCSDTPYEKVACEDEEERKSRRVYRGCSRSQTCKGCTSCVCFGCEVCRFSDCSCQICSDFTKNAKN 238
G ++FS+EE+RE+SG DH+E+ CGCTSH+YGDAV LRVF NGDL+I C+CTPGC EDKL+PAAFEKHSGRETARKWKNN+WVI NGEK+P+ KTVLLKYYN+ +K N S NGRV HRDEFVRCT C+K RRFRLR KEEC+++H+AF D WKC+D PY+K+ C+DEEER SRRVYRGC+RS TCKGCTSCVCFGCE+CRFSDC+CQ C+DFT+NAKN
Sbjct: 10 GLVIFSDEELREMSGVKRSGDHIEVMCGCTSHRYGDAVGRLRVFINGDLEITCECTPGCQEDKLTPAAFEKHSGRETARKWKNNVWVIVNGEKIPLCKTVLLKYYNQASKSANGSHRSHNGRVCHRDEFVRCTRCNKERRFRLRTKEECRIHHDAFADVNWKCADLPYDKITCDDEEERASRRVYRGCTRSPTCKGCTSCVCFGCEICRFSDCNCQTCTDFTRNAKN 236
Match: A0A072TI70 ((Putative transcription factor ULT family {ECO:0000313|EMBL:RHN60164.1}) (Ultrapetala developmental regulator {ECO:0000313|EMBL:KEH16896.1}))
HSP 1 Score: 352.829 bits (904), Expect = 4.889e-122
Identity = 166/226 (73.45%), Postives = 193/226 (85.40%), Query Frame = 0
Query: 14 GALMFSEEEVRELSGFVICEDHVEITCGCTSHQYGDAVATLRVFPNGDLQINCDCTPGCPEDKLSPAAFEKHSGRETARKWKNNIWVIDNGEKVPVAKTVLLKYYNKTTKC--GNKGSQNGRVGHRDEFVRCTVCSKRRRFRLRNKEECQVYHNAFKDAKWKCSDTPYEKVACEDEEERKSRRVYRGCSRSQTCKGCTSCVCFGCEVCRFSDCSCQICSDFTKNAK 237
G MFSEEE+RE+SG + +++VE+TCGCTSH+YGDAV LRVF +G LQI C+CTPGC EDKL+PAAFEKHSGRETARKWKNNIWVI NG+KVP+ KTVLLKYYN+ K G++ SQNGRVGHRDEFVRCT C+K RRFRLR+KEEC+++H+A DA WKCSD PYEK+ C+DEEER SRRVYRGC RS TCKGCTSCVCFGC++CRFSDC CQ C+DFT N K
Sbjct: 13 GLSMFSEEELREMSGVSVFDEYVEVTCGCTSHRYGDAVGRLRVFLSGYLQIICECTPGCDEDKLTPAAFEKHSGRETARKWKNNIWVIINGDKVPLGKTVLLKYYNQVAKAANGSQRSQNGRVGHRDEFVRCTRCNKERRFRLRSKEECRIHHDAVSDANWKCSDLPYEKITCDDEEERGSRRVYRGCGRSPTCKGCTSCVCFGCDICRFSDCDCQTCTDFTSNVK 238
Match: W9QZY1 ((Uncharacterized protein {ECO:0000313|EMBL:EXB62285.1}))
HSP 1 Score: 352.058 bits (902), Expect = 1.182e-121
Identity = 167/235 (71.06%), Postives = 193/235 (82.13%), Query Frame = 0
Query: 5 AGSKEISIGGALMFSEEEVRELSGFVICEDHVEITCGCTSHQYGDAVATLRVFPNGDLQINCDCTPGCPEDKLSPAAFEKHSGRETARKWKNNIWVIDNGEKVPVAKTVLLKYYNKTTKCGNKG--SQNGRVGHRDEFVRCTVCSKRRRFRLRNKEECQVYHNAFKDAKWKCSDTPYEKVACEDEEERKSRRVYRGCSRSQTCKGCTSCVCFGCEVCRFSDCSCQICSDFTKNAK 237
A E G ++FS++E+ E+SG DH+E+TCGCTSH+YGDAV LRVF NGDLQI C+CTPGC E KLSPAAFEKHSGRETARKWKNN+WVI NGEKVP+ KTVLLKYYN+T+K N S NGRV HRDEF+RCT C+K RRFRLR KEECQV+H+A D WKC+D PY+K+ C+DEEER SRRVYRGC+RS TCKGCTSCVCFGCE+CRFSDCSCQ C+DFT+NAK
Sbjct: 2 ANGLERESGLVVIFSDDELSEMSGVKKSGDHIEVTCGCTSHRYGDAVGRLRVFLNGDLQITCECTPGCQEGKLSPAAFEKHSGRETARKWKNNVWVIVNGEKVPLCKTVLLKYYNQTSKTANGSHRSNNGRVCHRDEFIRCTRCNKERRFRLRTKEECQVHHDALADVNWKCADLPYDKITCDDEEERASRRVYRGCTRSPTCKGCTSCVCFGCEICRFSDCSCQTCTDFTRNAK 236
Match: A0A371GVL6 ((Protein ULTRAPETALA 1 {ECO:0000313|EMBL:RDX94585.1}))
HSP 1 Score: 350.132 bits (897), Expect = 6.513e-121
Identity = 164/226 (72.57%), Postives = 193/226 (85.40%), Query Frame = 0
Query: 14 GALMFSEEEVRELSGFVICEDHVEITCGCTSHQYGDAVATLRVFPNGDLQINCDCTPGCPEDKLSPAAFEKHSGRETARKWKNNIWVIDNGEKVPVAKTVLLKYYNKTTKC--GNKGSQNGRVGHRDEFVRCTVCSKRRRFRLRNKEECQVYHNAFKDAKWKCSDTPYEKVACEDEEERKSRRVYRGCSRSQTCKGCTSCVCFGCEVCRFSDCSCQICSDFTKNAK 237
G +FSEEE+RE+SG D++E+TCGCTSH+YGDAV LRVF NG L+I C+CTPGC EDKL+P+AFEKHSGRETARKWKNN+WVI NGEKVP+ KTVLLKYYN+ +K G++ SQNGR HRDEFVRCT C+K RRFRLR KEEC+++H+A DA WKCSD PY+K+AC+DEEER SRRVYRGC+RS TCKGCTSCVCFGC++CRFSDCSCQ C+DFT NAK
Sbjct: 10 GLTLFSEEELREVSGLKRVGDYIEVTCGCTSHRYGDAVGRLRVFVNGYLEITCECTPGCQEDKLTPSAFEKHSGRETARKWKNNVWVIVNGEKVPLCKTVLLKYYNQVSKAANGSQRSQNGRACHRDEFVRCTRCNKERRFRLRTKEECRIHHDALADANWKCSDLPYDKIACDDEEERASRRVYRGCTRSPTCKGCTSCVCFGCDICRFSDCSCQTCADFTNNAK 235
Match: A0A2P5E4U1 ((Developmental regulator, ULTRAPETALA {ECO:0000313|EMBL:PON80575.1}))
HSP 1 Score: 349.362 bits (895), Expect = 1.134e-120
Identity = 162/225 (72.00%), Postives = 190/225 (84.44%), Query Frame = 0
Query: 15 ALMFSEEEVRELSGFVICEDHVEITCGCTSHQYGDAVATLRVFPNGDLQINCDCTPGCPEDKLSPAAFEKHSGRETARKWKNNIWVIDNGEKVPVAKTVLLKYYNKTTKCGNKG--SQNGRVGHRDEFVRCTVCSKRRRFRLRNKEECQVYHNAFKDAKWKCSDTPYEKVACEDEEERKSRRVYRGCSRSQTCKGCTSCVCFGCEVCRFSDCSCQICSDFTKNAK 237
+MFS+EE+ E+SG DH+E+TCGCTSH+YGDAV LRVF NG+L+I C+CTPGC EDKL+PAAFEKHSGRETARKWKNN+WVI NGEKVP+ KTVLLKYYN+ +K N SQNGRV HRDEF+RCT C+K RRFRLR KEEC+++H+A D WKC+D PY+K+ C+DEEER SRRVYRGCSRS TCKGCTSCVCFGC +CRFSDCSCQ C+DFT+NAK
Sbjct: 13 VMMFSDEELSEMSGVKRSGDHIEVTCGCTSHRYGDAVGRLRVFINGELEITCECTPGCQEDKLTPAAFEKHSGRETARKWKNNVWVIVNGEKVPLFKTVLLKYYNQASKSANGSHRSQNGRVCHRDEFIRCTRCNKERRFRLRTKEECRMHHDALADVNWKCADLPYDKITCDDEEERASRRVYRGCSRSPTCKGCTSCVCFGCNICRFSDCSCQTCTDFTRNAK 237
Match: A0A151TP49 ((Protein ULTRAPETALA 1 {ECO:0000313|EMBL:KYP68829.1}))
HSP 1 Score: 349.362 bits (895), Expect = 1.243e-120
Identity = 165/226 (73.01%), Postives = 191/226 (84.51%), Query Frame = 0
Query: 14 GALMFSEEEVRELSGFVICEDHVEITCGCTSHQYGDAVATLRVFPNGDLQINCDCTPGCPEDKLSPAAFEKHSGRETARKWKNNIWVIDNGEKVPVAKTVLLKYYNKTTKCGNKG--SQNGRVGHRDEFVRCTVCSKRRRFRLRNKEECQVYHNAFKDAKWKCSDTPYEKVACEDEEERKSRRVYRGCSRSQTCKGCTSCVCFGCEVCRFSDCSCQICSDFTKNAK 237
G +FSEEE+RE+SG D+VE+TCGCTSH+YGDAV LRVF NG L+I C+CTPGC EDKL+P+AFEKHSGRETARKWKNN+WVI NGEKVP+ KTVLLKYYN+ +K N SQNGR HRDEFVRCT C+K RRFRLR KEEC+++H+A DA WKCSD PY+K+AC+DEEER SRRVYRGC+RS TCKGCTSCVCFGC++CRFSDCSCQ C+DFT NAK
Sbjct: 10 GLTLFSEEELREVSGVKRVGDYVEVTCGCTSHRYGDAVGRLRVFVNGYLEITCECTPGCQEDKLTPSAFEKHSGRETARKWKNNVWVIVNGEKVPLCKTVLLKYYNQVSKAANGSHRSQNGRACHRDEFVRCTRCNKERRFRLRTKEECRIHHDALADANWKCSDLPYDKIACDDEEERASRRVYRGCTRSPTCKGCTSCVCFGCDICRFSDCSCQTCADFTNNAK 235
Match: A0A7J6GHY8 (SAND domain-containing protein {ECO:0000259|PROSITE:PS50864})
HSP 1 Score: 349.362 bits (895), Expect = 2.052e-120
Identity = 164/235 (69.79%), Postives = 194/235 (82.55%), Query Frame = 0
Query: 5 AGSKEISIGGALMFSEEEVRELSGFVICEDHVEITCGCTSHQYGDAVATLRVFPNGDLQINCDCTPGCPEDKLSPAAFEKHSGRETARKWKNNIWVIDNGEKVPVAKTVLLKYYNKTTKCGNKG--SQNGRVGHRDEFVRCTVCSKRRRFRLRNKEECQVYHNAFKDAKWKCSDTPYEKVACEDEEERKSRRVYRGCSRSQTCKGCTSCVCFGCEVCRFSDCSCQICSDFTKNAK 237
A E G ++FS+EE+ E+SG DH+E+TCGCTSH+YGDAV LRVF NGDL+I C+CTPGC EDKL+PAAFEKHSGRETARKWKNNIWVI NGEKVP+ KTVLLKYYN+++K N S NGR HRDEF+RCT C+K RRFRLR KEEC+++H+AF D WKC+D PY+K+ C+DEEER SRRVYRGC+RS TCKGCTSCVCFGCE+CRFS+CSCQ C+DFT+NAK
Sbjct: 14 ANGVERESGLVVLFSDEELSEMSGVKKTGDHIEVTCGCTSHRYGDAVGRLRVFINGDLEITCECTPGCQEDKLTPAAFEKHSGRETARKWKNNIWVIVNGEKVPLFKTVLLKYYNQSSKTANGSHRSHNGRACHRDEFIRCTRCNKERRFRLRTKEECRMHHDAFADVNWKCADLPYDKITCDDEEERASRRVYRGCTRSPTCKGCTSCVCFGCEICRFSECSCQTCTDFTRNAK 248
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5AAR4 | E-Value: 5.220e-123, PID: 70.83 | SAND domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A6N2M2I0 | E-Value: 8.873e-123, PID: 73.33 | SAND domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A836XZC5 | E-Value: 1.517e-122, PID: 73.33 | (Protein ULTRAPETALA {ECO:0000313|EMBL:KAG5233437.... [more] |
| A0A6P3Z551 | E-Value: 4.166e-122, PID: 71.81 | (protein ULTRAPETALA 1-like {ECO:0000313|RefSeq:XP... [more] |
| A0A072TI70 | E-Value: 4.889e-122, PID: 73.45 | (Putative transcription factor ULT family {ECO:000... [more] |
| W9QZY1 | E-Value: 1.182e-121, PID: 71.06 | (Uncharacterized protein {ECO:0000313|EMBL:EXB6228... [more] |
| A0A371GVL6 | E-Value: 6.513e-121, PID: 72.57 | (Protein ULTRAPETALA 1 {ECO:0000313|EMBL:RDX94585.... [more] |
| A0A2P5E4U1 | E-Value: 1.134e-120, PID: 72.00 | (Developmental regulator, ULTRAPETALA {ECO:0000313... [more] |
| A0A151TP49 | E-Value: 1.243e-120, PID: 73.01 | (Protein ULTRAPETALA 1 {ECO:0000313|EMBL:KYP68829.... [more] |
| A0A7J6GHY8 | E-Value: 2.052e-120, PID: 69.79 | SAND domain-containing protein {ECO:0000259|PROSIT... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |