XM_017359414.1

Resource Type: 
Polypeptide
Name: 
XM_017359414.1
Identifier: 
XM_017359414.1-protein
Sequence: 
MQKIIGYYIDLLTSSYSPPTWASTIAGAFVLLTLTLSFYLILEHLSTYKN
PEEQKFLICVILMVPCYAVESFISLVKPSISVDIGILRDCYESFAMYCFG
RYLVACLGGEERTIEFMEREGRASLKAPLLEHGSEKGILKHVFPMNLFLK
PWKLGKWVYQVIKFGIVQYMIIKALTAISAVVLEAFDLYCEGDFKLNCGY
PYTALVLNFSQSWALYCLVQFYGITKDELAHIKPLAKFLTFKSIVFLTWW
QGVAISLLSTLGLFKSPIAQQLQFKTSVQDFIICIEMGIASVVHLYVFPA
KPYELMGDLFQGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDMGV
KSGMTIRESVRDVFLGGGEYIVNDLKFTVNQAVEPMEKGINKFNKKLHNI
SENIKRHDKNKKTRDDSCINLSPPARKVIRGIDDPLLNGSFSDSGGFKKK
KHRRKAGYTSAESGGESSSDQTFGGYQVRGQRWITKE
Sequence Length: 
487
Sequence Checksum: 
309ef3b415a2e3c20d769b498b5253b0
View location in JBrowse: 
DCARv2_Chr6:24888240..24893669-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017359414.1, derives from mRNA, XM_017359414.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017359414.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017359414.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A2E9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524479.1}))

HSP 1 Score: 811.216 bits (2094), Expect = 0.000e+0
Identity = 396/484 (81.82%), Postives = 434/484 (89.67%), Query Frame = 0
 
Query:    5 IGYYIDLLTSSYSPPTWASTIAGAFVLLTLTLSFYLILEHLSTYKNPEEQKFLICVILMVPCYAVESFISLVKPSISVDIGILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASLKAPLLEHGSEKGILKHVFPMNLFLKPWKLGKWVYQVIKFGIVQYMIIKALTAISAVVLEAFDLYCEGDFKLNCGYPYTALVLNFSQSWALYCLVQFYGITKDELAHIKPLAKFLTFKSIVFLTWWQGVAISLLSTLGLFKSPIAQQLQFKTSVQDFIICIEMGIASVVHLYVFPAKPYELMGDLFQGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDMGVKSGMTIRESVRDVFLGGGEYIVNDLKFTVNQAVEPMEKGINKFNKKLHNISENIKRHDKNK-KTRDDSCINLSPPARKVIRGIDDPLLNGSFSDSGGFKKKKHRRKAGYTSAESGGESSSDQTFGGYQVRGQRWITKE 487
            I  Y+ L T SYSPPTWAS +AGAFVLLTLTLS YL+ EHLS YKNPEEQKFLI VILMVPCYAVESF+SLV PSISVDI ILRDCYESFAMYCFGRYLVACLGGEERTIEFMER+GR S K PLL++GSE+G +KH FPMN FLKPWKLG+WVYQVIKFGIVQYMIIK+ TAI AV+LEAFD+YCEGDFK  CGYPY A+VLNFSQSWALYCLVQFY ITKDELAHIKPL KFLTFKSIVFLTWWQGVAI+LL  LGLFKSPIAQ LQFK+SVQDFIICIEMGIASVVHLYVFP+KPYELMGD F GSVSVLGDY S DCPLDPDEVRDSERPTKLRLPQPD+ V+SGMTIRESVRDVF+GGGEYIVNDLKFTV QAVEP+EKG  +FN+KLH IS+N+KRHDK K +T+DDS I  S P RKVIRGIDDPLLNGS SDSG  + KK+R+K+GYTSAESGGESSSD ++GGY++RG+RW+ K+
Sbjct:    3 ITAYLSLATVSYSPPTWASLVAGAFVLLTLTLSIYLLFEHLSAYKNPEEQKFLIGVILMVPCYAVESFVSLVNPSISVDIEILRDCYESFAMYCFGRYLVACLGGEERTIEFMERQGRVSSKTPLLDYGSERGTVKHPFPMNYFLKPWKLGQWVYQVIKFGIVQYMIIKSFTAILAVILEAFDVYCEGDFKWGCGYPYMAVVLNFSQSWALYCLVQFYTITKDELAHIKPLYKFLTFKSIVFLTWWQGVAIALLYALGLFKSPIAQALQFKSSVQDFIICIEMGIASVVHLYVFPSKPYELMGDHFPGSVSVLGDYVSADCPLDPDEVRDSERPTKLRLPQPDIDVRSGMTIRESVRDVFIGGGEYIVNDLKFTVTQAVEPVEKGFTRFNEKLHKISQNMKRHDKEKRRTKDDSYIATSSPTRKVIRGIDDPLLNGSISDSGASRGKKYRKKSGYTSAESGGESSSDHSYGGYEIRGRRWVIKD 486
[Close]
BLAST of XM_017359414.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5A7QTE7 ((Uncharacterized protein {ECO:0000313|EMBL:GER48192.1}))

HSP 1 Score: 809.29 bits (2089), Expect = 0.000e+0
Identity = 382/482 (79.25%), Postives = 427/482 (88.59%), Query Frame = 0
 
Query:    7 YYIDLLTSSYSPPTWASTIAGAFVLLTLTLSFYLILEHLSTYKNPEEQKFLICVILMVPCYAVESFISLVKPSISVDIGILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASLKAPLLEHGSEKGILKHVFPMNLFLKPWKLGKWVYQVIKFGIVQYMIIKALTAISAVVLEAFDLYCEGDFKLNCGYPYTALVLNFSQSWALYCLVQFYGITKDELAHIKPLAKFLTFKSIVFLTWWQGVAISLLSTLGLFKSPIAQQLQFKTSVQDFIICIEMGIASVVHLYVFPAKPYELMGDLFQGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDMGVKSGMTIRESVRDVFLGGGEYIVNDLKFTVNQAVEPMEKGINKFNKKLHNISENIKRHDKNKKTRDDSCINLSPPARKVIRGIDDPLLNGSFSDSGGFKKKK-HRRKAGYTSAESGGESSSDQTFGGYQVRGQRWITKE 487
            YY++L++S YS P WA   AG  V++TLTLS YL+ EHLS YKNPEEQKFLI VI+MVPCYAVESF+SLVKP+ISV IGILRDCYESFAMYCFGRYLVACLGG+ERTIEFMEREGR S+KAPLL+HGSE+GI+KH FP+NLFLKPWKLG WVYQ IKFGIVQYMIIKA TAISAV+LEAFD+YCEGDFK NCGYPY A++LNFSQSWALYCL+ FY ITKDELAHIKPL KFLTFKSIVFLTWWQGVAI+LL  +GLF+SPIAQ LQFK+SVQ+FIICIEMGIA+ VHLYVFPAKPYE +GD F GSV+VLGDYASVDCPLDPDEVRDSERPTK RLPQPD   +SG  IRESVRDVFLGGGEYIVND+KFTV QAVEP+EKG+NKFN+KLH ISENIKRH+K ++TRDDSCI  S  A KVIRGIDDPLLNGS SDS   ++KK HRRK+GYTS ESG ESSSD T+ GY +RG+RW+ K+
Sbjct:   11 YYLNLVSSEYSTPIWAVLTAGFSVVVTLTLSVYLLFEHLSMYKNPEEQKFLIGVIVMVPCYAVESFVSLVKPAISVHIGILRDCYESFAMYCFGRYLVACLGGDERTIEFMEREGRTSVKAPLLDHGSERGIVKHPFPLNLFLKPWKLGGWVYQAIKFGIVQYMIIKAFTAISAVILEAFDVYCEGDFKWNCGYPYMAVILNFSQSWALYCLILFYTITKDELAHIKPLYKFLTFKSIVFLTWWQGVAIALLYAVGLFQSPIAQSLQFKSSVQNFIICIEMGIAAAVHLYVFPAKPYEYIGDHFSGSVAVLGDYASVDCPLDPDEVRDSERPTKFRLPQPDTKARSGTAIRESVRDVFLGGGEYIVNDVKFTVTQAVEPVEKGLNKFNQKLHKISENIKRHEKGRRTRDDSCIATSSSAMKVIRGIDDPLLNGSTSDSASSRRKKHHRRKSGYTS-ESGNESSSDLTYSGYMIRGRRWVVKD 491
[Close]
BLAST of XM_017359414.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A830D3T8 ((Transmembrane protein 184c {ECO:0000313|EMBL:GFQ01072.1}))

HSP 1 Score: 806.594 bits (2082), Expect = 0.000e+0
Identity = 377/472 (79.87%), Postives = 416/472 (88.14%), Query Frame = 0
 
Query:   16 YSPPTWASTIAGAFVLLTLTLSFYLILEHLSTYKNPEEQKFLICVILMVPCYAVESFISLVKPSISVDIGILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASLKAPLLEHGSEKGILKHVFPMNLFLKPWKLGKWVYQVIKFGIVQYMIIKALTAISAVVLEAFDLYCEGDFKLNCGYPYTALVLNFSQSWALYCLVQFYGITKDELAHIKPLAKFLTFKSIVFLTWWQGVAISLLSTLGLFKSPIAQQLQFKTSVQDFIICIEMGIASVVHLYVFPAKPYELMGDLFQGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDMGVKSGMTIRESVRDVFLGGGEYIVNDLKFTVNQAVEPMEKGINKFNKKLHNISENIKRHDKNKKTRDDSCINLSPPARKVIRGIDDPLLNGSFSDSGGFKKKKHRRKAGYTSAESGGESSSDQTFGGYQVRGQRWITKE 487
            YS P WA  IAG  V+LTLTLS YL+ EHLS YKNPEEQKFLI VI+MVPCYAVESF+SLV P ISVDIGILRDCYESFAMYCFGRYLVACLGG+ERT+EFMEREGRAS+K  LL+HG E+GI+KH FPMNLFLKPWKLG WV+QVIKFGIVQYMIIKA TAISAV+LEAFD+YCEGDFK NCGYPY A++LNFSQSWALYCLV FY ITKDELAHIKPL KFLTFKSIVFLTWWQGVAI+LL  +GL +SPIAQ LQFK+SVQDFIICIEMGIA+ VHLYVFPAKPYE MGD F GSV+VLGDYASVDCPLDPDEVRDSER TK RLPQPD   +SG  IRESVRD+F+GGGEYIVND+KFTV QAVEP+EKG  KFN+KLH IS+NIKRH+K ++TRDDSCI  S P RKVIRGIDDPLLNGS SDS   ++KKHRRK+GY SAESG ESSSD T+GGY +RG+RW+ K+
Sbjct:   23 YSTPIWAVLIAGCSVVLTLTLSVYLLFEHLSMYKNPEEQKFLIGVIVMVPCYAVESFVSLVNPKISVDIGILRDCYESFAMYCFGRYLVACLGGDERTVEFMEREGRASVKLSLLDHGHERGIVKHPFPMNLFLKPWKLGGWVFQVIKFGIVQYMIIKAFTAISAVILEAFDVYCEGDFKWNCGYPYMAVILNFSQSWALYCLVHFYAITKDELAHIKPLYKFLTFKSIVFLTWWQGVAIALLYAIGLVQSPIAQSLQFKSSVQDFIICIEMGIAAAVHLYVFPAKPYESMGDHFSGSVAVLGDYASVDCPLDPDEVRDSERRTKFRLPQPDTKARSGTAIRESVRDIFIGGGEYIVNDVKFTVTQAVEPVEKGFTKFNQKLHKISQNIKRHEKGRRTRDDSCIATSSPTRKVIRGIDDPLLNGSASDSATSRRKKHRRKSGYNSAESGNESSSDMTYGGYMIRGRRWVVKD 494
[Close]
BLAST of XM_017359414.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5FHG9 ((Transmembrane protein 184 {ECO:0000313|EMBL:KAB2602566.1}))

HSP 1 Score: 805.438 bits (2079), Expect = 0.000e+0
Identity = 381/482 (79.05%), Postives = 427/482 (88.59%), Query Frame = 0
 
Query:    8 YIDLLTS-SYSPPTWASTIAGAFVLLTLTLSFYLILEHLSTYKNPEEQKFLICVILMVPCYAVESFISLVKPSISVDIGILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASLKAPLLEHGSEKGILKHVFPMNLFLKPWKLGKWVYQVIKFGIVQYMIIKALTAISAVVLEAFDLYCEGDFKLNCGYPYTALVLNFSQSWALYCLVQFYGITKDELAHIKPLAKFLTFKSIVFLTWWQGVAISLLSTLGLFKSPIAQQLQFKTSVQDFIICIEMGIASVVHLYVFPAKPYELMGDLFQGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDMGVKSGMTIRESVRDVFLGGGEYIVNDLKFTVNQAVEPMEKGINKFNKKLHNISENIKRHDKNK-KTRDDSCINLSPPARKVIRGIDDPLLNGSFSDSGGFKKKKHRRKAGYTSAESGGESSSDQTFGGYQVRGQRWITKE 487
            ++DL+T  +Y+PPTWAS   G FVL+TL+LS YL+ EHLS YKNPEEQKFLI V+LMVPCYA+ES +S + PSISV   ILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRAS K PLLEH SE+G +KH FP+N  LKPWKLG+W YQV+KFGIVQYM+IK+L+AI AV+LEAFD+YCEGDFK  CGYPY A+VLNFSQSWALYCLVQFY +TKDELA IKPLAKFLTFKSIVFLTWWQGVAI+LL  LGLFKSPIAQ LQFK+SVQDFIICIEMGIASVVHLYVFPAKPYE+MGD F G+VSVLGDY S DCPLDP+EVRDSERPTKLRLP PD+ VKSGMTIRESVRDVF+GGGEYIV D+KFTV QAVEP+EKG  +FN+KLH ISENIK+HDK K KTRDDSCI+ S P RKVIRGIDDPLLNGS SDSG  +  +HRRK+GYTSAESGGES SDQ++GG+QVRG+RW+TK+
Sbjct:    6 FLDLITQLAYTPPTWASLACGVFVLITLSLSIYLVFEHLSAYKNPEEQKFLIGVVLMVPCYAIESLVSFLNPSISVYCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASSKTPLLEHSSERGTVKHPFPVNYILKPWKLGQWFYQVVKFGIVQYMLIKSLSAIVAVILEAFDVYCEGDFKWGCGYPYIAVVLNFSQSWALYCLVQFYTVTKDELARIKPLAKFLTFKSIVFLTWWQGVAIALLYALGLFKSPIAQGLQFKSSVQDFIICIEMGIASVVHLYVFPAKPYEMMGDRFPGTVSVLGDYVSADCPLDPEEVRDSERPTKLRLPTPDIDVKSGMTIRESVRDVFIGGGEYIVQDVKFTVTQAVEPVEKGFTRFNEKLHKISENIKKHDKEKRKTRDDSCISTS-PTRKVIRGIDDPLLNGSMSDSGVARANRHRRKSGYTSAESGGESGSDQSYGGFQVRGRRWVTKD 486
[Close]
BLAST of XM_017359414.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZI85 ((Uncharacterized protein {ECO:0000313|EMBL:MPA44102.1}))

HSP 1 Score: 797.734 bits (2059), Expect = 0.000e+0
Identity = 398/484 (82.23%), Postives = 435/484 (89.88%), Query Frame = 0
 
Query:    5 IGYYIDLLTSSYSPPTWASTIAGAFVLLTLTLSFYLILEHLSTYKNPEEQKFLICVILMVPCYAVESFISLVKPSISVDIGILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASLKAPLLEHGSEKGILKHVFPMNLFLKPWKLGKWVYQVIKFGIVQYMIIKALTAISAVVLEAFDLYCEGDFKLNCGYPYTALVLNFSQSWALYCLVQFYGITKDELAHIKPLAKFLTFKSIVFLTWWQGVAISLLSTLGLFKSPIAQQLQFKTSVQDFIICIEMGIASVVHLYVFPAKPYELMGDLFQGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDMGVKSGMTIRESVRDVFLGGGEYIVNDLKFTVNQAVEPMEKGINKFNKKLHNISENIKRHDKNKK-TRDDSCINLSPPARKVIRGIDDPLLNGSFSDSGGFKKKKHRRKAGYTSAESGGESSSDQTFGGYQVRGQRWITKE 487
            I  Y++L T +YSPPTWAS +AG  VLLTLTLS YL+ EHLS YKNPEEQKFLI V+LMVPCYAVESF+SLV PSISVDI ILRDCYESFAMYCFGRYLVACLGGEERTIEFMER+GR S K PLLEHG E+G +KH FPMN FLKPWKLG+WVYQVIKFGIVQYMIIK+ TAI AVVLEAF +YCEGDF+L CGYPY A+VLNFSQSWALYCLVQFY ITKDELAHIKPLAKFLTFKSIVFLTWWQGVAI+LL  LGLFKSPIAQ LQFK+SVQDFIICIEMGIASVVHLYVFPAKPYELMGD F GSVSVLGDYAS DCPLDPDEVRDSERPTKLRLPQPD+ V+SGMTIRESVRDVF+GGGEYIVND+KFTVNQAVEP+EKGI + N+KLH IS+N+KRH+K K+ T+DDSCI  S P R+VI GIDDPLLNGS SDSG  + KKHRRK+GYTSAESGGESSSD ++GGYQ+RG RW+TK+
Sbjct:    3 ITAYLNLATVTYSPPTWASLVAGVLVLLTLTLSIYLLFEHLSAYKNPEEQKFLIGVVLMVPCYAVESFVSLVNPSISVDIEILRDCYESFAMYCFGRYLVACLGGEERTIEFMERQGRVSSKTPLLEHGFERGTVKHPFPMNYFLKPWKLGQWVYQVIKFGIVQYMIIKSFTAILAVVLEAFGVYCEGDFELACGYPYMAVVLNFSQSWALYCLVQFYTITKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYALGLFKSPIAQALQFKSSVQDFIICIEMGIASVVHLYVFPAKPYELMGDRFPGSVSVLGDYASTDCPLDPDEVRDSERPTKLRLPQPDIDVRSGMTIRESVRDVFIGGGEYIVNDVKFTVNQAVEPVEKGITRLNEKLHRISQNMKRHNKEKRSTKDDSCIATS-PTRRVICGIDDPLLNGSISDSGVSRGKKHRRKSGYTSAESGGESSSDHSYGGYQIRGHRWVTKD 485
[Close]
BLAST of XM_017359414.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TPM4 ((protein LAZ1 isoform X1 {ECO:0000313|RefSeq:XP_011085372.1, ECO:0000313|RefSeq:XP_011085373.1}))

HSP 1 Score: 795.423 bits (2053), Expect = 0.000e+0
Identity = 383/493 (77.69%), Postives = 432/493 (87.63%), Query Frame = 0
 
Query:    1 MQKIIG----YYIDLLTSSYSPPTWASTIAGAFVLLTLTLSFYLILEHLSTYKNPEEQKFLICVILMVPCYAVESFISLVKPSISVDIGILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASLKAPLLEHGSEKGILKHVFPMNLFLKPWKLGKWVYQVIKFGIVQYMIIKALTAISAVVLEAFDLYCEGDFKLNCGYPYTALVLNFSQSWALYCLVQFYGITKDELAHIKPLAKFLTFKSIVFLTWWQGVAISLLSTLGLFKSPIAQQLQFKTSVQDFIICIEMGIASVVHLYVFPAKPYELMGDLFQGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDMGVKSGMTIRESVRDVFLGGGEYIVNDLKFTVNQAVEPMEKGINKFNKKLHNISENIKRHDKNKKTRDDSCINLSPPARKVIRGIDDPLLNGSFSDSGGFKKKKHRRKAGYT-SAESGGESSSDQT-FGGYQVRGQRWITKE 487
            +QKII     YY++L +S YS P WA  IAG FV+++LTLS YL+ EHLSTYKNPEEQKFLI VILMVP YAVESFISL+ P+ISV IGILRDCYESFAMYCFGRYLVACLGGEER IEFMEREGRAS K PLL+HGSE+GI+KH FP+N  LKPWKLG+WVYQVIKFGIVQYMIIKA TAISAV+LEAF +YCEGDFKLNCGYPY A++LNFSQSWALYCLV FY ITKDELAH+KPL KFLTFKSIVFLTWWQGVAI+LL  +GLFKSPIAQ LQFK++VQDFIICIEMGIAS+VHLYVFPAKPYELMGD F GSV+VLGDYASVD PLDPDEVRDSERPTKLRLPQPD   +SGMTIRESVRDVF+GGGEYIVND+KFTV QAVEP+EKGI KFN+KLH IS+NIK+H++ ++T+DDSC  L+ P R VIRGIDDPLLNGS SD+G  ++KKHRRK+GYT +   G  SSSDQ  +G YQ+RG+RW+ K+
Sbjct:    2 LQKIINSGYYYYLNLASSGYSTPIWAVLIAGVFVVISLTLSVYLLFEHLSTYKNPEEQKFLIGVILMVPTYAVESFISLMNPAISVGIGILRDCYESFAMYCFGRYLVACLGGEERAIEFMEREGRASAKTPLLDHGSERGIVKHPFPLNYILKPWKLGRWVYQVIKFGIVQYMIIKAFTAISAVILEAFHVYCEGDFKLNCGYPYMAVILNFSQSWALYCLVHFYAITKDELAHMKPLYKFLTFKSIVFLTWWQGVAIALLYAVGLFKSPIAQSLQFKSTVQDFIICIEMGIASLVHLYVFPAKPYELMGDHFSGSVAVLGDYASVDGPLDPDEVRDSERPTKLRLPQPDYNARSGMTIRESVRDVFIGGGEYIVNDVKFTVTQAVEPVEKGITKFNQKLHKISQNIKKHERGRRTKDDSC--LTSPTRNVIRGIDDPLLNGSISDTGSSRRKKHRRKSGYTSAESGGESSSSDQIPYGSYQIRGRRWLIKD 492
[Close]
BLAST of XM_017359414.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KTV4 ((Protein laz1 {ECO:0000313|EMBL:OIT32750.1}))

HSP 1 Score: 793.882 bits (2049), Expect = 0.000e+0
Identity = 382/477 (80.08%), Postives = 432/477 (90.57%), Query Frame = 0
 
Query:   12 LTSSYSPPTWASTIAGAFVLLTLTLSFYLILEHLSTYKNPEEQKFLICVILMVPCYAVESFISLVKPSISVDIGILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASLKAPLLEHGSEKGILKHVFPMNLFLKPWKLGKWVYQVIKFGIVQYMIIKALTAISAVVLEAFDLYCEGDFKLNCGYPYTALVLNFSQSWALYCLVQFYGITKDELAHIKPLAKFLTFKSIVFLTWWQGVAISLLSTLGLFKSPIAQQLQFKTSVQDFIICIEMGIASVVHLYVFPAKPYELMGDLFQGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDMGVKSGMTIRESVRDVFLGGGEYIVNDLKFTVNQAVEPMEKGINKFNKKLHNISENIKRHDKNKKTRDDSCINLSPPARKVIRGIDDPLLNGSFSDSGGFKKKKHR-RKAGYTSAESGGESSSDQTFGGYQVRGQRWITKE 487
            L SSYSPP WA+ +AG FV+++LTLS YL+ EHLS YKNPEEQKFLI VILMVPCYAVESF+SLV P++SV IGILRDCYESFAMYCFGRYL+ACLGGEER I FMEREGRA+ K PLLEHGSEKG++KH+FPMN FLKPWKLG+WVYQVIKFGIVQYMIIKALTAISAV+LEAFD+YCEGDFK NCGYPY A+VLNFSQSWALYCLVQFY ITK+ELAHIKPL KFLTFKSIVFLTWWQGVAI+LL +LGLF+SPIA+ LQFK+S+QDFIICIEMG+AS VHLYVFPAKPYELMG+ + G+V+VLGDY S D P+DP+EVRD ERPTKLRLPQPD+  KSGMTIRESV+DVF+GGGEYIVNDLKFTV QAVEP+EKGI    +KLH IS+NIK+H+K K+T+DDSCI  S PAR+VIRGIDDPLL+GS SDSG  +KKKHR RK+GYTSAESGGESSSDQ+FGG QVRG+RW+TK+
Sbjct:   21 LFSSYSPPVWATLVAGVFVVVSLTLSMYLLFEHLSAYKNPEEQKFLIGVILMVPCYAVESFVSLVHPAVSVHIGILRDCYESFAMYCFGRYLIACLGGEERAILFMEREGRAASKMPLLEHGSEKGVVKHLFPMNYFLKPWKLGQWVYQVIKFGIVQYMIIKALTAISAVILEAFDVYCEGDFKWNCGYPYVAVVLNFSQSWALYCLVQFYAITKNELAHIKPLYKFLTFKSIVFLTWWQGVAIALLCSLGLFRSPIAEALQFKSSIQDFIICIEMGVASAVHLYVFPAKPYELMGERYTGAVAVLGDYVSADLPVDPEEVRDCERPTKLRLPQPDIDAKSGMTIRESVKDVFIGGGEYIVNDLKFTVTQAVEPVEKGI----QKLHKISQNIKKHEKEKRTKDDSCIATSSPARRVIRGIDDPLLHGSISDSGTSRKKKHRSRKSGYTSAESGGESSSDQSFGGIQVRGRRWVTKD 493
[Close]
BLAST of XM_017359414.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4AV82 ((protein LAZ1 isoform X1 {ECO:0000313|RefSeq:XP_015893062.1}))

HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0
Identity = 386/486 (79.42%), Postives = 431/486 (88.68%), Query Frame = 0
 
Query:    3 KIIGYYIDLLTSSYSPPTWASTIAGAFVLLTLTLSFYLILEHLSTYKNPEEQKFLICVILMVPCYAVESFISLVKPSISVDIGILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASLKAPLLEHGSEKGILKHVFPMNLFLKPWKLGKWVYQVIKFGIVQYMIIKALTAISAVVLEAFDLYCEGDFKLNCGYPYTALVLNFSQSWALYCLVQFYGITKDELAHIKPLAKFLTFKSIVFLTWWQGVAISLLSTLGLFKSPIAQQLQFKTSVQDFIICIEMGIASVVHLYVFPAKPYELMGDLFQGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDMGVKSGMTIRESVRDVFLGGGEYIVNDLKFTVNQAVEPMEKGINKFNKKLHNISENIKRHDKN-KKTRDDSCINLSPPARKVIRGIDDPLLNGSFSDSGGFKKKKHRRKAGYTSAESGGESSSDQTFGGYQVRGQRWITKE 487
            KI  Y+  ++   YSPP WAS  AGA VL+TL LS YL+LEHL  YKNPEEQKFLI VILMVPCYAVESF+SL+ PSISVD  ILRDCYESFAMYCFGRYLVACLGGEERTIEFMER+GRAS KAPLLEHGSEKG + H FPMN F+KPWKLG+W YQ+IK GIVQYM+IKALTA+ AV+LEAFD+YCEG+FKL CGYPY A+VLNFSQSWALYCLVQFY +TKDELAHIKPL KFLTFKSIVFLTWWQGVAI+LL +LGLFKSPIAQ LQFK+SVQDFIICIEM IA+ VHLYVFPAKPYELMGD F GSVSVLGDYA+VDCPLDPDEVRDSERPTKLRLP PD+  K GMTIRESVRDVF+GGG YIVND+KFT+ QAVEP+EKGI +FN+KL  IS+NIKRHDK+ ++T+DDSCI+ S P R+VIRGIDDPLLNGS SDSG  + KK RRK+GYTSAESGGESSSDQ++GGYQ+RG+RW+TKE
Sbjct:    2 KITAYFNLVIGLGYSPPAWASLTAGALVLVTLILSVYLLLEHLQAYKNPEEQKFLIGVILMVPCYAVESFVSLINPSISVDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMERQGRASSKAPLLEHGSEKGTVNHPFPMNYFIKPWKLGQWFYQIIKIGIVQYMLIKALTALLAVILEAFDVYCEGEFKLGCGYPYMAVVLNFSQSWALYCLVQFYAVTKDELAHIKPLYKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSVQDFIICIEMAIAAAVHLYVFPAKPYELMGDRFPGSVSVLGDYAAVDCPLDPDEVRDSERPTKLRLPTPDIDSKGGMTIRESVRDVFIGGGGYIVNDVKFTMTQAVEPVEKGITRFNEKLQKISQNIKRHDKDRRRTKDDSCIS-SAPTRRVIRGIDDPLLNGSISDSGVLRGKKQRRKSGYTSAESGGESSSDQSYGGYQIRGRRWVTKE 486
[Close]
BLAST of XM_017359414.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G7V2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5936001.1}))

HSP 1 Score: 793.112 bits (2047), Expect = 0.000e+0
Identity = 385/474 (81.22%), Postives = 429/474 (90.51%), Query Frame = 0
 
Query:   15 SYSPPTWASTIAGAFVLLTLTLSFYLILEHLSTYKNPEEQKFLICVILMVPCYAVESFISLVKPSISVDIGILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASLKAPLLEHGSEKGILKHVFPMNLFLKPWKLGKWVYQVIKFGIVQYMIIKALTAISAVVLEAFDLYCEGDFKLNCGYPYTALVLNFSQSWALYCLVQFYGITKDELAHIKPLAKFLTFKSIVFLTWWQGVAISLLSTLGLFKSPIAQQLQFKTSVQDFIICIEMGIASVVHLYVFPAKPYELMGDLFQGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDMGVKSGMTIRESVRDVFLGGGEYIVNDLKFTVNQAVEPMEKGINKFNKKLHNISENIKRHDKNK-KTRDDSCINLSPPARKVIRGIDDPLLNGSFSDSGGFKKKKHRRKAGYTSAESGGESSSDQTFGGYQVRGQRWITKE 487
            SYS P+WA+ +AGAFV++TLTLS YL+ EHLS YKNPEEQKFLI VILMVPCYAVESF+SL+ P+ISVDI ILRDCYESFAMYCFGRYLVACLGGEERTIEFMER+GRA  K PLL+HG EKG +KH FPMN FLKPWKL +WVYQVIKFGIVQYMIIKA+TAI +V+LEAF +YCEGDFK  CGYPY A+VLNFSQSWALYCLVQFY ITK+ELAHIKPL KF+TFKSIVFLTWWQGVAI+LL  LGLFKSPIAQ LQF++SVQDFIICIEMGIASVVHLYVFPA PYELMG+ F GSV+VLGDYAS DCPLDPDEVRDSERPTKLRLPQPD+ V+SGMTIRESVRDVFLGGGEYIVND+KFTV QAVEPMEKG  +FN+KLH IS+NIKRHDK+K +T+DDS I  S P R+VIRGIDDPLLNGSFSDSG  + K+HRRK+GYTSAESGGESSSDQT+GGY++ G+RW+TK+
Sbjct:   17 SYSTPSWATLVAGAFVVVTLTLSIYLLFEHLSAYKNPEEQKFLIGVILMVPCYAVESFVSLMNPTISVDIEILRDCYESFAMYCFGRYLVACLGGEERTIEFMERQGRA--KIPLLDHGIEKGTIKHPFPMNYFLKPWKLNQWVYQVIKFGIVQYMIIKAVTAILSVILEAFGVYCEGDFKWGCGYPYMAVVLNFSQSWALYCLVQFYAITKEELAHIKPLYKFVTFKSIVFLTWWQGVAIALLYALGLFKSPIAQALQFQSSVQDFIICIEMGIASVVHLYVFPATPYELMGERFHGSVAVLGDYASADCPLDPDEVRDSERPTKLRLPQPDIDVRSGMTIRESVRDVFLGGGEYIVNDVKFTVTQAVEPMEKGFTRFNQKLHKISQNIKRHDKDKRRTKDDSYIASSSPVRRVIRGIDDPLLNGSFSDSGVSRAKRHRRKSGYTSAESGGESSSDQTYGGYEIGGRRWVTKD 488
[Close]
BLAST of XM_017359414.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3YE76 ((protein LAZ1-like isoform X1 {ECO:0000313|RefSeq:XP_016450505.1}))

HSP 1 Score: 791.956 bits (2044), Expect = 0.000e+0
Identity = 382/480 (79.58%), Postives = 433/480 (90.21%), Query Frame = 0
 
Query:    9 IDLLTSSYSPPTWASTIAGAFVLLTLTLSFYLILEHLSTYKNPEEQKFLICVILMVPCYAVESFISLVKPSISVDIGILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASLKAPLLEHGSEKGILKHVFPMNLFLKPWKLGKWVYQVIKFGIVQYMIIKALTAISAVVLEAFDLYCEGDFKLNCGYPYTALVLNFSQSWALYCLVQFYGITKDELAHIKPLAKFLTFKSIVFLTWWQGVAISLLSTLGLFKSPIAQQLQFKTSVQDFIICIEMGIASVVHLYVFPAKPYELMGDLFQGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDMGVKSGMTIRESVRDVFLGGGEYIVNDLKFTVNQAVEPMEKGINKFNKKLHNISENIKRHDKNKKTRDDSCINLSPPARKVIRGIDDPLLNGSFSDSGGFKKKKHR-RKAGYTSAESGGESSSDQTFGGYQVRGQRWITKE 487
            I  L S+YSPP WA+ +AG FV+++LTLS YL+ EHLS YKNPEEQKFLI VILMVPCYAVESF+SLV P++SV IGILRDCYESFAMYCFGRYLVACLGGEER I FMEREGRA+ K PLLEHGSEKG++KH+FPMN FLKPWKLG+WVYQVIKFGIVQYMIIKALTAISAV+LEAFD+YCEGDFK NCGYPY A+VLNFSQSWALYCLVQFY ITK+ELAHIKPL KFLTFKSIVFLTWWQGVAI+LL +LGLF+SPIA+ LQFK+S+QDFIIC+EMG+AS VHLYVFPAKPYELMG+ + G+V+VLGDY S D P+DP+EVRDSERPTKLRLPQPD+  KSGMTIRESV+DVF+GGGEYIVNDLKFTV QAVEP+EKGI    +KLH IS+NIK+H+K K+T+DDSCI  S P R+VIRGIDDPLL+GS SDSG  +KKKHR RK+GYTSAESGGESSSDQ+FGG QVRG+RW+TK+
Sbjct:   18 IHGLFSNYSPPVWATLVAGVFVVVSLTLSMYLLFEHLSAYKNPEEQKFLIGVILMVPCYAVESFVSLVHPAVSVHIGILRDCYESFAMYCFGRYLVACLGGEERAILFMEREGRAASKMPLLEHGSEKGVVKHLFPMNYFLKPWKLGQWVYQVIKFGIVQYMIIKALTAISAVILEAFDVYCEGDFKWNCGYPYVAVVLNFSQSWALYCLVQFYAITKNELAHIKPLYKFLTFKSIVFLTWWQGVAIALLCSLGLFRSPIAEALQFKSSIQDFIICMEMGVASAVHLYVFPAKPYELMGERYTGAVAVLGDYVSADLPVDPEEVRDSERPTKLRLPQPDIDTKSGMTIRESVKDVFIGGGEYIVNDLKFTVTQAVEPVEKGI----QKLHKISQNIKKHEKEKRTKDDSCIATSSPVRRVIRGIDDPLLHGSISDSGTARKKKHRSRKSGYTSAESGGESSSDQSFGGIQVRGRRWVTKD 493
Match NameStatsDescription
A0A5J5A2E9E-Value: 0.000e+0, PID: 81.82(Uncharacterized protein {ECO:0000313|EMBL:KAA8524... [more]
A0A5A7QTE7E-Value: 0.000e+0, PID: 79.25(Uncharacterized protein {ECO:0000313|EMBL:GER4819... [more]
A0A830D3T8E-Value: 0.000e+0, PID: 79.87(Transmembrane protein 184c {ECO:0000313|EMBL:GFQ0... [more]
A0A5N5FHG9E-Value: 0.000e+0, PID: 79.05(Transmembrane protein 184 {ECO:0000313|EMBL:KAB26... [more]
A0A5B6ZI85E-Value: 0.000e+0, PID: 82.23(Uncharacterized protein {ECO:0000313|EMBL:MPA4410... [more]
A0A6I9TPM4E-Value: 0.000e+0, PID: 77.69(protein LAZ1 isoform X1 {ECO:0000313|RefSeq:XP_01... [more]
A0A314KTV4E-Value: 0.000e+0, PID: 80.08(Protein laz1 {ECO:0000313|EMBL:OIT32750.1})[more]
A0A6P4AV82E-Value: 0.000e+0, PID: 79.42(protein LAZ1 isoform X1 {ECO:0000313|RefSeq:XP_01... [more]
A0A7J7G7V2E-Value: 0.000e+0, PID: 81.22(Uncharacterized protein {ECO:0000313|EMBL:KAF5936... [more]
A0A1S3YE76E-Value: 0.000e+0, PID: 79.58(protein LAZ1-like isoform X1 {ECO:0000313|RefSeq:... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.