XM_017403302.1

Resource Type: 
Polypeptide
Name: 
XM_017403302.1
Identifier: 
XM_017403302.1-protein
Sequence: 
MGDSEAAVAVKTPENKEKQMFKKSTWGDFKAEAKQISMIFTPMLIVTTSQ
YLLRFVSTLMVGHVGKLYLSGAVVSMSFTNVSGFSFLFGMASALETLCGQ
AYGAKQHKKLSHYTYGAIISLLILCIPVGILWIFMEKLLILIQQDPDISR
EAGKFSIRLIPALFPYAILQPLVRYLQSQYLILPLLTSSVATLLFHVPVC
WAFVFKFNMGSDGAAYAIGLSYWFNAIFLGLYAMYSPKCADTRAPLSWEI
FGTIKDFFRFGIPSALMVCLEWWAYEIIILLAGVMRNPQLETSVLSISIT
VAVLHYFAPFSLGVAASVRVSNELGAGNPQAVRTTVWVVMVLGVIEVSVA
AVVLYSLRHVLGRAFVSDKDIIDYVRRMTPFICLTMILDAVQGILSGVAR
GTGWQRLGAYVNLGSYYLVGIPMALLLGFLVHMRAKGLWIGLVAGSLVQS
ILLAIITSFTNWKKEVEDTKERVLEMKASDEKK
Sequence Length: 
483
Sequence Checksum: 
d4ad1177bc0e3ce1c2d6e8551c107539
View location in JBrowse: 
DCARv2_Chr6:26032873..26035524-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017403302.1, derives from mRNA, XM_017403302.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017403302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017403302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8FQ10 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 588.571 bits (1516), Expect = 0.000e+0
Identity = 280/470 (59.57%), Postives = 353/470 (75.11%), Query Frame = 0
 
Query:   14 ENKEKQMFKKSTWGDFKAEAKQISMIFTPMLIVTTSQYLLRFVSTLMVGHVGKLYLSGAVVSMSFTNVSGFSFLFGMASALETLCGQAYGAKQHKKLSHYTYGAIISLLILCIPVGILWIFMEKLLILIQQDPDISREAGKFSIRLIPALFPYAILQPLVRYLQSQYLILPLLTSSVATLLFHVPVCWAFVFKFNMGSDGAAYAIGLSYWFNAIFLGLYAMYSPKCADTRAPLSWEIFGTIKDFFRFGIPSALMVCLEWWAYEIIILLAGVMRNPQLETSVLSISITVAVLHYFAPFSLGVAASVRVSNELGAGNPQAVRTTVWVVMVLGVIEVSVAAVVLYSLRHVLGRAFVSDKDIIDYVRRMTPFICLTMILDAVQGILSGVARGTGWQRLGAYVNLGSYYLVGIPMALLLGFLVHMRAKGLWIGLVAGSLVQSILLAIITSFTNWKKEVEDTKERVLEMKASDEKK 483
            E K   + ++  W  F  E K++S I  PM++VT SQ+LLR VS +M+GH+ +L LSGA ++ S TNV+GFS LFGM+SALETLCGQAYGA++++KL  YT GAIISLL++CIP+ +LW+F++K LILI QDP IS EAGK+S  LI  LFPYAILQ LVRYLQ+Q LILP+L SS+A L FHVP+CWA VFK N+GS GAA AIGLSYWFN + L LY  YS  C  TR   S E+  + K+FF   IPSA MVCLEWW  EI+ILLAG++  PQLETSVLSI + V+ LHYF PFS+G  AS RVSNELGAGNP+A R +V  V VLG+ E  VA VVL    HVLG AF ++K+++DY+R MTP +CL + +D +Q +LSGVARG GWQ LGAYVNLGSYYLV IP+A+LLGF +H++ KGLWIGL AGS+VQS+L ++IT  T+W+ +    +ER+   +A+ E  
Sbjct:    7 EEKSGSL-RRGRWDVFVKELKKVSYIAMPMVVVTVSQHLLRVVSMMMIGHLNELSLSGAAIATSLTNVTGFSLLFGMSSALETLCGQAYGAEEYRKLGIYTNGAIISLLVVCIPISVLWLFVDKFLILIGQDPLISIEAGKYSCWLISTLFPYAILQALVRYLQTQSLILPMLMSSIAALCFHVPLCWALVFKLNLGSGGAAIAIGLSYWFNVLLLSLYVKYSSSCEKTRLCFSKEVLTSTKEFFHLAIPSASMVCLEWWTSEIVILLAGLLTKPQLETSVLSICLLVSSLHYFIPFSIGAGASTRVSNELGAGNPEAARMSVLSVTVLGLAEAIVACVVLLCSCHVLGYAFSNEKEVVDYLRDMTPLLCLLIGIDCIQAVLSGVARGCGWQHLGAYVNLGSYYLVAIPIAILLGFFLHLKGKGLWIGLNAGSVVQSLLFSLITCLTDWQNQASIARERIFHARATKESD 475
[Close]
BLAST of XM_017403302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KL93 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 577.4 bits (1487), Expect = 0.000e+0
Identity = 270/455 (59.34%), Postives = 352/455 (77.36%), Query Frame = 0
 
Query:   29 FKAEAKQISMIFTPMLIVTTSQYLLRFVSTLMVGHVGKLYLSGAVVSMSFTNVSGFSFLFGMASALETLCGQAYGAKQHKKLSHYTYGAIISLLILCIPVGILWIFMEKLLILIQQDPDISREAGKFSIRLIPALFPYAILQPLVRYLQSQYLILPLLTSSVATLLFHVPVCWAFVFKFNMGSDGAAYAIGLSYWFNAIFLGLYAMYSPKCADTRAPLSWEIFGTIKDFFRFGIPSALMVCLEWWAYEIIILLAGVMRNPQLETSVLSISITVAVLHYFAPFSLGVAASVRVSNELGAGNPQAVRTTVWVVMVLGVIEVSVAAVVLYSLRHVLGRAFVSDKDIIDYVRRMTPFICLTMILDAVQGILSGVARGTGWQRLGAYVNLGSYYLVGIPMALLLGFLVHMRAKGLWIGLVAGSLVQSILLAIITSFTNWKKEVEDTKERVLEMKASDEKK 483
            F  E K++S I  PM++VT SQYLLR    +M+GH+G+L LS A ++ S +NV+GFS LFGMASALETLCGQAYGA Q++KL  +TYGAII L I+CIPV +LWIF +KLLIL+ QDP I+ EAGK++I LIP LFPYAILQ LVRYLQ+Q LILP+L S+V +L   VP+CW F+FK  +G+ GAA +IGLSYW N I L LY  YS  CA TRA  S ++F TI DFFRF IPSA+MVCLEWW++E+IILL+G++ NP LETSVLSI  T   +HY  P+S G AAS RVSNELGAG PQA +  +  V++L V EV +A++ ++++RHV G AF  +K++I YV  +TP +C+++I+D  Q +LSGVARG+GWQ +GAYVNLG+YYLVGIP+ALLLGF++H++ KGLWIGLVAG+ VQSI L++IT FTNW+K+  + ++R+   K + E +
Sbjct:   22 FGEELKEVSRIAMPMIVVTVSQYLLRVSPMIMLGHLGELQLSSASIATSLSNVTGFSLLFGMASALETLCGQAYGAGQYRKLGTFTYGAIICLFIVCIPVSVLWIFTDKLLILMGQDPAIATEAGKYAIWLIPTLFPYAILQSLVRYLQAQSLILPMLLSAVVSLCLQVPICWVFIFKLGLGNAGAAMSIGLSYWLNVILLMLYVKYSSTCAKTRASFSRDVFLTIGDFFRFAIPSAVMVCLEWWSFELIILLSGLLPNPALETSVLSICFTTTSVHYHIPYSFGAAASTRVSNELGAGRPQAAKVALGAVLILSVAEVILASISIFAVRHVWGYAFTFEKEVITYVAEITPILCISIIMDGTQAVLSGVARGSGWQHIGAYVNLGAYYLVGIPVALLLGFVLHLKGKGLWIGLVAGATVQSISLSLITGFTNWEKQAIEARQRIFSGKLAVENQ 476
[Close]
BLAST of XM_017403302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7FCL7 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 575.089 bits (1481), Expect = 0.000e+0
Identity = 273/457 (59.74%), Postives = 347/457 (75.93%), Query Frame = 0
 
Query:   21 FKKSTWGDFKAEAKQISMIFTPMLIVTTSQYLLRFVSTLMVGHVGKLYLSGAVVSMSFTNVSGFSFLFGMASALETLCGQAYGAKQHKKLSHYTYGAIISLLILCIPVGILWIFMEKLLILIQQDPDISREAGKFSIRLIPALFPYAILQPLVRYLQSQYLILPLLTSSVATLLFHVPVCWAFVFKFNMGSDGAAYAIGLSYWFNAIFLGLYAMYSPKCADTRAPLSWEIFGTIKDFFRFGIPSALMVCLEWWAYEIIILLAGVMRNPQLETSVLSISITVAVLHYFAPFSLGVAASVRVSNELGAGNPQAVRTTVWVVMVLGVIEVSVAAVVLYSLRHVLGRAFVSDKDIIDYVRRMTPFICLTMILDAVQGILSGVARGTGWQRLGAYVNLGSYYLVGIPMALLLGFLVHMRAKGLWIGLVAGSLVQSILLAIITSFTNWKKEVEDTKERVLEMK 477
             +   WG F  E K++S I  PM++VT SQ+LLR VS +M+GH+ +L LSGA +++S TNV+GFS LFGM+SALETLCGQAYGA++++KL  YT GAIISLL++CIPV +LW+F++K LILI QDP IS EAGK+S  LI  LFPYAILQ L+RYLQ+Q LILP+L SS+A L FHVP+CWA VFK N+GS GAA AIGLSYWFN   L LY  YS  C  TR   + E+  + K+FF   IPSA MVCLEWW  EI+ILLAG++  PQLETSVLSI + V+ L+YF PFS+G  AS R+SNELGAGNP+A R +V  V VLG+ E  VA+++L     +LG AF ++K+++DY+R MTP +CL +  D +Q +LSGVARG+GWQ LGAYVNLGSYYLVGIP+A+LLGF +H++ KGLWIGL AGSLVQS+L  +IT  T+W+ +    +ER+   K
Sbjct:   10 LRGRRWGVFVEELKKVSYIAIPMVVVTVSQHLLRVVSMMMIGHLSELSLSGAAIAISLTNVTGFSLLFGMSSALETLCGQAYGAEEYRKLGIYTNGAIISLLVVCIPVSVLWLFVDKFLILIGQDPLISIEAGKYSSWLIATLFPYAILQALIRYLQTQSLILPMLMSSIAALCFHVPLCWALVFKLNLGSGGAAIAIGLSYWFNVFLLCLYVKYSSSCEKTRLCFTKEVLPSTKEFFHLAIPSASMVCLEWWTSEIVILLAGLLPKPQLETSVLSICLLVSSLNYFIPFSIGAGASTRISNELGAGNPEAARMSVMSVTVLGMAEAIVASIILLCSCRILGYAFSNEKEVVDYLRDMTPLLCLLIATDCIQAVLSGVARGSGWQHLGAYVNLGSYYLVGIPVAILLGFFLHLKGKGLWIGLNAGSLVQSLLFFLITCLTDWQNQASIARERIFHSK 466
[Close]
BLAST of XM_017403302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1D0L9 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0
Identity = 274/457 (59.96%), Postives = 348/457 (76.15%), Query Frame = 0
 
Query:   21 FKKSTWGDFKAEAKQISMIFTPMLIVTTSQYLLRFVSTLMVGHVGKLYLSGAVVSMSFTNVSGFSFLFGMASALETLCGQAYGAKQHKKLSHYTYGAIISLLILCIPVGILWIFMEKLLILIQQDPDISREAGKFSIRLIPALFPYAILQPLVRYLQSQYLILPLLTSSVATLLFHVPVCWAFVFKFNMGSDGAAYAIGLSYWFNAIFLGLYAMYSPKCADTRAPLSWEIFGTIKDFFRFGIPSALMVCLEWWAYEIIILLAGVMRNPQLETSVLSISITVAVLHYFAPFSLGVAASVRVSNELGAGNPQAVRTTVWVVMVLGVIEVSVAAVVLYSLRHVLGRAFVSDKDIIDYVRRMTPFICLTMILDAVQGILSGVARGTGWQRLGAYVNLGSYYLVGIPMALLLGFLVHMRAKGLWIGLVAGSLVQSILLAIITSFTNWKKEVEDTKERVLEMK 477
             +   W  F  E K++S I  PM++VT SQ+LLR VS +M+GH+ +L LSGA ++ S TNV+GFS LFGM+SALETLCGQAYGA++++KL  YT GAIISLL++CIP+ +LW+F++K LILI QDP IS EAGK+S  LI ALFPYAILQ L+RYLQ+Q LILP+L SS+A L FHVP+CWA VFK N+GS GAA AIGLSY FN + L LY  YS  C  TR   + E+  + K+FF   IPSA MVCLEWW  EI+ILLAG++  PQLETSVLSI + V+ LHYF PFS+G  AS R+SNELGAGNP+A R +V  V VLG+ E  VA+++L    HVLG AF ++K+++ Y+R MTP +CL +  D +Q +LSGVARG+GWQ LGAYVNLGSYYLVGIP+A+LLGF +H++ KGLWIGL AGSLVQS+L ++IT  T+W+K+    +ER+   K
Sbjct:   10 LRGRRWDVFVEELKKVSNIAIPMVVVTVSQHLLRVVSMMMIGHLSELSLSGAAIATSLTNVTGFSLLFGMSSALETLCGQAYGAEEYRKLGIYTNGAIISLLLVCIPISVLWLFVDKFLILIGQDPLISIEAGKYSSWLIAALFPYAILQALIRYLQTQSLILPMLMSSIAALCFHVPLCWALVFKLNLGSGGAAIAIGLSYSFNVLLLCLYVKYSSSCEKTRLCFTKEVLPSTKEFFHLAIPSASMVCLEWWTSEIVILLAGLLPKPQLETSVLSICLLVSSLHYFIPFSIGAGASTRISNELGAGNPEAARMSVLSVTVLGMAEAIVASIILLCSCHVLGYAFSNEKEVVYYLRDMTPLLCLLIATDCIQAVLSGVARGSGWQHLGAYVNLGSYYLVGIPVAILLGFFLHLKGKGLWIGLNAGSLVQSLLFSLITCLTDWQKQASIARERIYHSK 466
[Close]
BLAST of XM_017403302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8FBE5 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 572.392 bits (1474), Expect = 0.000e+0
Identity = 268/455 (58.90%), Postives = 347/455 (76.26%), Query Frame = 0
 
Query:   29 FKAEAKQISMIFTPMLIVTTSQYLLRFVSTLMVGHVGKLYLSGAVVSMSFTNVSGFSFLFGMASALETLCGQAYGAKQHKKLSHYTYGAIISLLILCIPVGILWIFMEKLLILIQQDPDISREAGKFSIRLIPALFPYAILQPLVRYLQSQYLILPLLTSSVATLLFHVPVCWAFVFKFNMGSDGAAYAIGLSYWFNAIFLGLYAMYSPKCADTRAPLSWEIFGTIKDFFRFGIPSALMVCLEWWAYEIIILLAGVMRNPQLETSVLSISITVAVLHYFAPFSLGVAASVRVSNELGAGNPQAVRTTVWVVMVLGVIEVSVAAVVLYSLRHVLGRAFVSDKDIIDYVRRMTPFICLTMILDAVQGILSGVARGTGWQRLGAYVNLGSYYLVGIPMALLLGFLVHMRAKGLWIGLVAGSLVQSILLAIITSFTNWKKEVEDTKERVLEMKASDEKK 483
            F  E K+ S I  PM+IVT SQYLLR    +M+GH+G+L LS A ++ S +NV+G+S LFGM+SALETLCGQAYGA Q++KL  YTY AII L ++CIPV +LWIF +KLLIL+ QDP I+ EAGK++I LIP LFPYAILQ LVRYLQ+Q +ILP+L ++VA+L F V VCWAF+FK N+GS GAA +IGLSYW N I L  Y  YS  C  TRA  S ++F TI DFFRF IPSA+MVCLEWW++EIIILL+G++ NP LETSVLSI  T   +HY  P+S G AAS RVSNELGAG PQA +  +  V+VL   EV +A++ L+++RHV G AF  +K+++ YV  +TP +C+++I+D  Q +LSGVARG+GWQ +GAYVNLG+YYLVGIP ALLLGF++H+  KGLW GLVAG++VQSI L+++T FTNW+K+  + + R+   K + E +
Sbjct:   20 FVDELKEASHIAIPMIIVTVSQYLLRVSPMIMLGHLGELSLSSASIATSLSNVTGYSLLFGMSSALETLCGQAYGAGQYRKLGTYTYSAIICLFLVCIPVSVLWIFTDKLLILMGQDPSIAAEAGKYAIWLIPTLFPYAILQSLVRYLQAQSIILPMLINAVASLCFQVTVCWAFIFKLNLGSTGAALSIGLSYWLNVILLMFYVKYSSACEKTRASFSRDVFLTIGDFFRFAIPSAVMVCLEWWSFEIIILLSGLLPNPMLETSVLSICFTTTSVHYHVPYSFGAAASTRVSNELGAGRPQAAKIALAAVIVLSATEVVLASITLFAVRHVWGSAFTYEKEVVTYVAEITPILCISIIMDGTQAVLSGVARGSGWQHIGAYVNLGAYYLVGIPAALLLGFVLHLNGKGLWSGLVAGTIVQSISLSLVTGFTNWEKQAIEARGRIFNEKLAGENQ 474
[Close]
BLAST of XM_017403302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A482EW65 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 261/469 (55.65%), Postives = 359/469 (76.55%), Query Frame = 0
 
Query:    5 EAAVAVKTPENKEKQMFKKSTWGDFKAEAKQISMIFTPMLIVTTSQYLLRFVSTLMVGHVGKLYLSGAVVSMSFTNVSGFSFLFGMASALETLCGQAYGAKQHKKLSHYTYGAIISLLILCIPVGILWIFMEKLLILIQQDPDISREAGKFSIRLIPALFPYAILQPLVRYLQSQYLILPLLTSSVATLLFHVPVCWAFVFKFNMGSDGAAYAIGLSYWFNAIFLGLYAMYSPKCADTRAPLSWEIFGTIKDFFRFGIPSALMVCLEWWAYEIIILLAGVMRNPQLETSVLSISITVAVLHYFAPFSLGVAASVRVSNELGAGNPQAVRTTVWVVMVLGVIEVSVAAVVLYSLRHVLGRAFVSDKDIIDYVRRMTPFICLTMILDAVQGILSGVARGTGWQRLGAYVNLGSYYLVGIPMALLLGFLVHMRAKGLWIGLVAGSLVQSILLAIITSFTNWKKEVEDTKERV 473
            EA + +    N+E+ ++  S WG    E K+++ I  PM++VT SQYLLR     M+GH+G+L LS A ++ SF NV+GFS LFGM+SALETLCGQAYGAKQ++++  + YGAI+ L ++CIPV +LWI+ EK+LI + QDP IS  AGK++I LIP LFPYAILQ LVRYLQ+Q LILP+L SS+A++ FH+P+CWAF+FK N+GS G A +IG+SYWFN I L LY  YS  C  T A  S E+F T+++FF+F IPSA+MVCLEWW++E++ILL+GV+ NPQLE SVLSI  T+  +HY  P+S G AAS  VSNELGAG P+A R  +  V+VL V E  +A++ +Y  R +LG AF  +K++++Y++ M PF+CL++++D++Q +LSGVARG+GWQ +GAYVNLGSYYLVGIP+ALLLGF++H++ +GLW GLVAG+ VQSI L++IT  T+W+K+  + + R+
Sbjct:    2 EAEIPLLKGLNRER-IWWFSRWGTIAGELKRVNFIALPMIVVTVSQYLLRVSPMFMLGHLGQLSLSSASIATSFCNVTGFSLLFGMSSALETLCGQAYGAKQYQRVGTFAYGAILCLFLVCIPVSLLWIYTEKILIFMGQDPSISAAAGKYAILLIPTLFPYAILQSLVRYLQTQSLILPMLWSSLASICFHLPLCWAFIFKLNLGSAGGALSIGISYWFNVILLVLYVKYSQNCKKTSAKFSREVFATMREFFQFAIPSAVMVCLEWWSFELVILLSGVLPNPQLEASVLSICFTITSVHYHIPYSFGAAASTLVSNELGAGKPEAARIALCAVLVLAVTEFLIASITIYICRGILGYAFSEEKEVVNYIKEMVPFLCLSIVMDSLQSVLSGVARGSGWQHIGAYVNLGSYYLVGIPVALLLGFVLHLKGEGLWSGLVAGATVQSISLSLITGLTDWEKQAREARNRI 469
[Close]
BLAST of XM_017403302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A482ES80 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0
Identity = 261/469 (55.65%), Postives = 359/469 (76.55%), Query Frame = 0
 
Query:    5 EAAVAVKTPENKEKQMFKKSTWGDFKAEAKQISMIFTPMLIVTTSQYLLRFVSTLMVGHVGKLYLSGAVVSMSFTNVSGFSFLFGMASALETLCGQAYGAKQHKKLSHYTYGAIISLLILCIPVGILWIFMEKLLILIQQDPDISREAGKFSIRLIPALFPYAILQPLVRYLQSQYLILPLLTSSVATLLFHVPVCWAFVFKFNMGSDGAAYAIGLSYWFNAIFLGLYAMYSPKCADTRAPLSWEIFGTIKDFFRFGIPSALMVCLEWWAYEIIILLAGVMRNPQLETSVLSISITVAVLHYFAPFSLGVAASVRVSNELGAGNPQAVRTTVWVVMVLGVIEVSVAAVVLYSLRHVLGRAFVSDKDIIDYVRRMTPFICLTMILDAVQGILSGVARGTGWQRLGAYVNLGSYYLVGIPMALLLGFLVHMRAKGLWIGLVAGSLVQSILLAIITSFTNWKKEVEDTKERV 473
            EA + +    N+E+ ++  S WG    E K+++ I  PM++VT SQYLLR     M+GH+G+L LS A ++ SF NV+GFS LFGM+SALETLCGQAYGAKQ++++  + YGAI+ L ++CIPV +LWI+ EK+LI + QDP IS  AGK++I LIP LFPYAILQ LVRYLQ+Q LILP+L SS+A++ FH+P+CWAF+FK N+GS G A +IG+SYWFN I L LY  YS  C  T A  S E+F T+++FF+F IPSA+MVCLEWW++E++ILL+GV+ NPQLE SVLSI  T+  +HY  P+S G AAS  VSNELGAG P+A R  +  V+VL V E  +A++ +Y  R +LG AF  +K++++Y++ M PF+CL++++D++Q +LSGVARG+GWQ +GAYVNLGSYYLVGIP+ALLLGF++H++ +GLW GLVAG+ VQSI L++IT  T+W+K+  + + R+
Sbjct:    2 EAEIPLLKGLNRER-IWWFSRWGTIAGELKRVNFIALPMIVVTVSQYLLRVSPMFMLGHLGQLSLSSASIATSFCNVTGFSLLFGMSSALETLCGQAYGAKQYQRVGTFAYGAILCLFLVCIPVSLLWIYTEKILIFMGQDPSISAAAGKYAILLIPTLFPYAILQSLVRYLQTQSLILPMLWSSLASICFHLPLCWAFIFKLNLGSAGGALSIGISYWFNVILLVLYVKYSQNCKKTSAKFSREVFATMREFFQFAIPSAVMVCLEWWSFELVILLSGVLPNPQLEASVLSICFTITSVHYHIPYSFGAAASTLVSNELGAGKPEAARIALCAVLVLAVTEFLIASITIYICRGILGYAFSEEKEVVNYIKEMVPFLCLSIVMDSLQSVLSGVARGSGWQHIGAYVNLGSYYLVGIPVALLLGFVLHLKGEGLWSGLVAGATVQSISLSLITGLTDWEKQAREARNRI 469
[Close]
BLAST of XM_017403302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1NLL3 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 568.155 bits (1463), Expect = 0.000e+0
Identity = 273/461 (59.22%), Postives = 347/461 (75.27%), Query Frame = 0
 
Query:   22 KKSTWGDFKAEAKQISMIFTPMLIVTTSQYLLRFVSTLMVGHVGKLYLSGAVVSMSFTNVSGFSFLFGMASALETLCGQAYGAKQHKKLSHYTYGAIISLLILCIPVGILWIFMEKLLILIQQDPDISREAGKFSIRLIPALFPYAILQPLVRYLQSQYLILPLLTSSVATLLFHVPVCWAFVFKFNMGSDGAAYAIGLSYWFNAIFLGLYAMYSPKCADTRAPLSWEIFGTIKDFFRFGIPSALMVCLEWWAYEIIILLAGVMRNPQLETSVLSISITVAVLHYFAPFSLGVAASVRVSNELGAGNPQAVRTTVWVVMVLGVIEVSVAAVVLYSLRHVLGRAFVSDKDIIDYVRRMTPFICLTMILDAVQGILSGVARGTGWQRLGAYVNLGSYYLVGIPMALLLGFLVHMRAKGLWIGLVAGSLVQSILLAIITSFTNWKKEVEDTKERVLEMKASDEK 482
            +   W     E K+   I  PM++VT SQ LLR  S  MVGH+G+L L+G  V+ S TNV+GFS LFGMASALETLCGQAYGA Q+ KLS YTYGAIISL+I+C P+ ILWI+++KLLIL+ QDP IS EA KFS+ LIP LFPYAILQ + RYLQSQ LI P+L SS+A L+ HVPVCWA VFK  +G+ GAA AIG+SY  N IFLG+Y   S  C  TR   S ++  +IK+FF FGIPSA M+CLEWW+YEI+ILL+G++ NPQLETSVLSI +T+A LHYF P+SLG AAS RV+NELGAGNP A +  +  V VLGV+EV +A+  L+  R VLG AF ++K+++DYV+ +T  IC ++  D VQ ILSGVARG+GWQ +GAY+NLGSYYL GIPMAL+LGF+VH++  GLW GL+ GS+ Q ILL ++T FTNW+K+    ++R+ + + S E+
Sbjct:   11 QPQRWQVVLQEVKKTCYIALPMVVVTVSQNLLRVASMSMVGHLGELELAGTAVATSLTNVTGFSLLFGMASALETLCGQAYGAGQYTKLSTYTYGAIISLIIVCFPISILWIYVDKLLILLGQDPLISAEARKFSVWLIPTLFPYAILQLITRYLQSQSLIFPMLWSSIAVLVIHVPVCWALVFKLGLGNAGAALAIGISYTLNVIFLGIYMYRSKDCEKTRVTCSGDVLPSIKEFFHFGIPSAAMICLEWWSYEIVILLSGLLPNPQLETSVLSICLTIATLHYFIPYSLGAAASTRVANELGAGNPDAAKVALLAVFVLGVMEVIIASATLFCFRSVLGYAFGNEKELVDYVKEITLLICFSISADTVQAILSGVARGSGWQHIGAYINLGSYYLAGIPMALILGFVVHLKGVGLWCGLINGSVAQCILLTLVTYFTNWEKQAIMARQRMFKDENSLEE 471
[Close]
BLAST of XM_017403302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7FIV7 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0
Identity = 264/462 (57.14%), Postives = 348/462 (75.32%), Query Frame = 0
 
Query:   13 PENKEKQMFKKSTWGDFKAEAKQISMIFTPMLIVTTSQYLLRFVSTLMVGHVGKLYLSGAVVSMSFTNVSGFSFLFGMASALETLCGQAYGAKQHKKLSHYTYGAIISLLILCIPVGILWIFMEKLLILIQQDPDISREAGKFSIRLIPALFPYAILQPLVRYLQSQYLILPLLTSSVATLLFHVPVCWAFVFKFNMGSDGAAYAIGLSYWFNAIFLGLYAMYSPKCADTRAPLS-WEIFGTIKDFFRFGIPSALMVCLEWWAYEIIILLAGVMRNPQLETSVLSISITVAVLHYFAPFSLGVAASVRVSNELGAGNPQAVRTTVWVVMVLGVIEVSVAAVVLYSLRHVLGRAFVSDKDIIDYVRRMTPFICLTMILDAVQGILSGVARGTGWQRLGAYVNLGSYYLVGIPMALLLGFLVHMRAKGLWIGLVAGSLVQSILLAIITSFTNWKKEVEDTKERV 473
            PE +E  +   +TWG      K++  I  PM++V  +Q+L+R +S +M+GH+ +L LSGA V+ S TNV+GFS L GMAS LETLCGQAYGAKQ+KKL  YT GAIISLL++CIP+ ILW+FM+K+LI + QDP ISREAGK+SI L+ +LFP+AILQ + RYLQ+Q LILP++ SS+ATL FHVP+CW  VF  + GS GAA+AIGLSYWFN + LGLY  YS  C  TR   S  E+  +I++FF   IPSA MVCLEWW +EI+ILLAGV+ NPQLETSVLSI + +A  HYF PFSLG  AS RVSNELGAGN +A +  V   + + + +  ++  + Y  RH++G AF ++K+++DY+  M PF+C+ M+ D +QG+LSGVARG+GWQ LGAYVNLGS+YL GIP A++ GFL H++ KGLWIGL  G+++QS+LL+IITSFT+WKK+    +ER+
Sbjct:    8 PEKRES-LKTITTWGSLLEAMKKVCYIAIPMIVVNVTQHLIRVLSMMMLGHLSELSLSGASVATSLTNVTGFSLLVGMASGLETLCGQAYGAKQYKKLGIYTTGAIISLLLVCIPISILWLFMDKILIFMHQDPLISREAGKYSIWLLISLFPFAILQAVTRYLQTQSLILPMVVSSIATLCFHVPICWLCVFTLDFGSVGAAFAIGLSYWFNLLILGLYVKYSKSCEKTRLYFSKEEVLASIREFFPLAIPSACMVCLEWWTFEIVILLAGVLPNPQLETSVLSICLLIASTHYFLPFSLGAGASTRVSNELGAGNDEAAKMAVRAALTISMADAIISGTLFYCCRHIVGYAFSNEKEVVDYISEMAPFLCILMVSDCIQGVLSGVARGSGWQHLGAYVNLGSFYLAGIPTAIVCGFLFHLQGKGLWIGLNVGNVLQSLLLSIITSFTDWKKQASIARERI 468
[Close]
BLAST of XM_017403302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A830CPK4 ((Mate efflux family protein 9 {ECO:0000313|EMBL:GFP96975.1}))

HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0
Identity = 263/479 (54.91%), Postives = 360/479 (75.16%), Query Frame = 0
 
Query:    5 EAAVAVKTPENKEKQMFKKSTWGDFKAEAKQISMIFTPMLIVTTSQYLLRFVSTLMVGHVGKLYLSGAVVSMSFTNVSGFSFLFGMASALETLCGQAYGAKQHKKLSHYTYGAIISLLILCIPVGILWIFMEKLLILIQQDPDISREAGKFSIRLIPALFPYAILQPLVRYLQSQYLILPLLTSSVATLLFHVPVCWAFVFKFNMGSDGAAYAIGLSYWFNAIFLGLYAMYSPKCADTRAPLSWEIFGTIKDFFRFGIPSALMVCLEWWAYEIIILLAGVMRNPQLETSVLSISITVAVLHYFAPFSLGVAASVRVSNELGAGNPQAVRTTVWVVMVLGVIEVSVAAVVLYSLRHVLGRAFVSDKDIIDYVRRMTPFICLTMILDAVQGILSGVARGTGWQRLGAYVNLGSYYLVGIPMALLLGFLVHMRAKGLWIGLVAGSLVQSILLAIITSFTNWKKEVEDTKERVLEMKASDEKK 483
            EA V +    + E+ +++ + WG    E  +++ I  PM++VT SQYLLR     M+GH+G+L LS A ++ SF NV+G+S LFGMASALETLCGQAYG +Q++++  +TYGAI+ L ++C+PV ILW++ EKLLI + QDP IS EAGKF+I LIP LFPYAILQ LVRYLQ+Q LI P+L S++A+L   +P+CWA +FK N+GS G A ++G+SYWFN I L LY  YSP C  T A  S ++F T+++FFRF IPSA+MVCLEWW++E++ILL+GV+ NPQLETSVLSI  TV  LHY  P+S G AAS  VSNELGAG P+A R  +  V+VL V E  +A++ +Y  R +LG AF  +K+++ YV+ M PF+CL++I+D++Q +LSGVARG+GWQ +GAYVNLGSYYLVGIP+ALLLGF++H++ +GLW GLVAG+ VQS  L++IT+ T+W+K+    +ER+   K+  E +
Sbjct:    2 EAEVPLLKGSDGER-IWRFTWWGTVSKELNRVNFIALPMIVVTISQYLLRVSPMFMLGHLGELSLSSASIATSFCNVTGYSLLFGMASALETLCGQAYGGEQYQRVGTFTYGAILCLFLVCLPVSILWVYAEKLLIFMGQDPLISAEAGKFAILLIPTLFPYAILQALVRYLQTQSLIFPMLWSALASLCVQLPICWALIFKLNLGSAGGALSVGISYWFNVILLVLYVKYSPTCKKTTATFSKDVFVTMREFFRFAIPSAVMVCLEWWSFELVILLSGVLPNPQLETSVLSICFTVTSLHYHIPYSFGAAASTLVSNELGAGKPEAARVALCAVLVLSVAEFLLASITIYFCRGILGYAFSEEKEVVSYVKEMAPFLCLSIIMDSLQSVLSGVARGSGWQHIGAYVNLGSYYLVGIPVALLLGFVLHLKGEGLWTGLVAGATVQSFSLSLITALTDWEKQARQARERLFAGKSIPESQ 479
Match NameStatsDescription
A0A1U8FQ10E-Value: 0.000e+0, PID: 59.57Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A314KL93E-Value: 0.000e+0, PID: 59.34Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A3Q7FCL7E-Value: 0.000e+0, PID: 59.74Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
M1D0L9E-Value: 0.000e+0, PID: 59.96Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A1U8FBE5E-Value: 0.000e+0, PID: 58.90Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A482EW65E-Value: 0.000e+0, PID: 55.65Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A482ES80E-Value: 0.000e+0, PID: 55.65Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A2U1NLL3E-Value: 0.000e+0, PID: 59.22Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A3Q7FIV7E-Value: 0.000e+0, PID: 57.14Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A830CPK4E-Value: 0.000e+0, PID: 54.91(Mate efflux family protein 9 {ECO:0000313|EMBL:GF... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.