XM_017401349.1

Resource Type: 
Polypeptide
Name: 
XM_017401349.1
Identifier: 
XM_017401349.1-protein
Sequence: 
MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGD
DFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAI
MTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLE
RLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGAD
SGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQ
QLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVG
EDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSP
PGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDRASDSSSPVAAAVENREA
TETRVCEGEVS
Sequence Length: 
411
Sequence Checksum: 
6d3e3a0768da0eacd3024c0992f909d1
View location in JBrowse: 
DCARv2_Chr6:26547495..26551935+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017401349.1, derives from mRNA, XM_017401349.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017401349.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017401349.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9SPU2 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})

HSP 1 Score: 513.457 bits (1321), Expect = 4.653e-180
Identity = 256/384 (66.67%), Postives = 303/384 (78.91%), Query Frame = 0
 
Query:   28 TMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDRASDSSSPVAAAVENREATETRVCEGEVS 411
             +KKK++G +SRIWN +FRLHGDDFEKRLQ+ISKEEAA+++R+K+RS+  R +T++LIIFSV+ E+ AVCYAIMTTRS+DLNWKMRA RV PMFLLP LSS++YSA VSFTRM DRKDQKTLERLRAER  KI+ELKEKTNYY TQQLIQRYDPDPAAKAAAAT+LASKLGADSGLK+Y+GD++KLN  TGKS+DVE  Q+SGLRNRKQ  +RSSS  S+ +     E++    +EG + + H+Q+VVEH NP +    DGGWIAR+AALLVGEDPTQSYALICGNC MHNGLARKED+PYITYYCPHC+ALN+PKQLE       S  +SPI G LK      V  N S P  D    S SP  A  E RE TE R+  G++S
Sbjct:   19 VVKKKRKGFMSRIWNGIFRLHGDDFEKRLQNISKEEAAVLSRMKKRSLTWRKMTRHLIIFSVIFEVIAVCYAIMTTRSMDLNWKMRAFRVLPMFLLPALSSIAYSAFVSFTRMCDRKDQKTLERLRAERQAKIDELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKVYVGDEAKLNTPTGKSNDVEYAQASGLRNRKQVQTRSSSAGSSPVHHSNEEIICSPQSEGLETSEHNQLVVEHHNPQASTMHDGGWIARLAALLVGEDPTQSYALICGNCRMHNGLARKEDFPYITYYCPHCHALNQPKQLEQR----GSGSNSPILGGLKDGGNAVVVNNASNPMGDSTVPSKSPATADSEIREVTE-RLVAGDLS 397
[Close]
BLAST of XM_017401349.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DJA8 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})

HSP 1 Score: 505.368 bits (1300), Expect = 9.509e-177
Identity = 268/411 (65.21%), Postives = 316/411 (76.89%), Query Frame = 0
 
Query:    1 MATDSKKDQKEVAEIAGDLSATASEEK----TMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQH-AATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSS-LVSSPISGPLKPVDEVSVDQNVSKPTSDRASDSSSPVAAAVENREATETRV 405
            MA +S K Q    +    L   A+E+K     +KKK+RG++SRIWN +FRLHGDDFEKRLQ+ISKEEAA+VA++K+RS + R + ++LIIFSV+ E+ AV YAIMTTRS+DLNWKMRA RV PMFLLP LSS++YSA+VSFTRM DRKDQKTLERLR ER  KI+ELKEKTNYY TQQLIQRYDPDPAAKAAAAT+LASKLGADSGLKLY+GD+S LNP T KS+DVE VQSSGLRNRKQ  +RSSS  S V Q    E++ + A  EG+D +  +Q+VVEH  P S    DGGWIARIAALLVGEDPTQSYALICGNCHMHNGLAR+ED+PYITYYCPHCNALNR KQ EG     S  +VSS ++  + P+      + VS   SD    SSSP+A+ VE  E +ET V
Sbjct:    1 MAGESDKAQ----DTGKSLDVPATEKKDSVTVVKKKQRGVISRIWNRLFRLHGDDFEKRLQNISKEEAAVVAKMKKRSQSWRRMIRHLIIFSVVFEIIAVGYAIMTTRSVDLNWKMRAFRVLPMFLLPALSSVTYSALVSFTRMCDRKDQKTLERLRTERQAKIDELKEKTNYYSTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKLYVGDESNLNP-TAKSNDVELVQSSGLRNRKQLHTRSSSAGSTVSQHSNEELLHNTAGIEGADTSNCNQLVVEHHQPGST-THDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARQEDFPYITYYCPHCNALNRSKQQEGVPNSDSPRIVSSVMASNVNPI------RTVSGTMSDGTPVSSSPLASVVETMEVSETVV 399
[Close]
BLAST of XM_017401349.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GVM6 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})

HSP 1 Score: 505.368 bits (1300), Expect = 1.108e-176
Identity = 268/411 (65.21%), Postives = 316/411 (76.89%), Query Frame = 0
 
Query:    1 MATDSKKDQKEVAEIAGDLSATASEEK----TMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQH-AATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSS-LVSSPISGPLKPVDEVSVDQNVSKPTSDRASDSSSPVAAAVENREATETRV 405
            MA +S K Q    +    L   A+E+K     +KKK+RG++SRIWN +FRLHGDDFEKRLQ+ISKEEAA+VA++K+RS + R + ++LIIFSV+ E+ AV YAIMTTRS+DLNWKMRA RV PMFLLP LSS++YSA+VSFTRM DRKDQKTLERLR ER  KI+ELKEKTNYY TQQLIQRYDPDPAAKAAAAT+LASKLGADSGLKLY+GD+S LNP T KS+DVE VQSSGLRNRKQ  +RSSS  S V Q    E++ + A  EG+D +  +Q+VVEH  P S    DGGWIARIAALLVGEDPTQSYALICGNCHMHNGLAR+ED+PYITYYCPHCNALNR KQ EG     S  +VSS ++  + P+      + VS   SD    SSSP+A+ VE  E +ET V
Sbjct:    1 MAGESDKAQ----DTGKSLDVPATEKKDSVTVVKKKQRGVISRIWNRLFRLHGDDFEKRLQNISKEEAAVVAKMKKRSQSWRRMIRHLIIFSVVFEIIAVGYAIMTTRSVDLNWKMRAFRVLPMFLLPALSSVTYSALVSFTRMCDRKDQKTLERLRTERQAKIDELKEKTNYYSTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKLYVGDESNLNP-TAKSNDVELVQSSGLRNRKQLHTRSSSAGSTVSQHSNEELLHNTAGIEGADTSNCNQLVVEHHQPGST-THDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARQEDFPYITYYCPHCNALNRSKQQEGVPNSDSPRIVSSVMASNVNPI------RTVSGTMSDGTPVSSSPLASVVETVEVSETVV 399
[Close]
BLAST of XM_017401349.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2BQM9 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})

HSP 1 Score: 502.671 bits (1293), Expect = 9.290e-176
Identity = 272/402 (67.66%), Postives = 311/402 (77.36%), Query Frame = 0
 
Query:    1 MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLE----GSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDR--ASDSSSPVAAAVE 396
            MA +  K+  +VAE     S+T +EEKT KKKK+G  S IWN +FR   DDFEKRLQHISKEEAA++AR+ +RS N R +T++LI+ SV+ E+ AV YAIMTTRSLDLNWKMRALRV PMFLLP LS ++YSAI SFTRM +RKDQKTLE+LRAER  KI ELKEKTNYYITQQLIQRYDPDPAAKAAAAT+LASKLG D+GLK+Y+GDD+K N  TGKS+DVE VQS+GLRNRKQ  +RSSS  SAV+     EM+Q A  EGSDM +H Q VVEH NPT    QDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKED+PYITYYCPHC+ALNRPKQL+    G+S P     +S     L  VD V   + V   T D+  AS S SPVAA VE
Sbjct:    1 MAAEPTKEHVDVAETEPVASSTDNEEKTKKKKKKGFFSMIWNSLFRSKKDDFEKRLQHISKEEAAVIARINKRSQNWRRMTRHLIVLSVIFEVIAVGYAIMTTRSLDLNWKMRALRVLPMFLLPGLSFITYSAIGSFTRMCERKDQKTLEKLRAERQAKIEELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNDVEVVQSNGLRNRKQ--ARSSSPESAVIDHPGAEMLQQAQLEGSDMMQHQQTVVEHYNPTGSSTQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPYITYYCPHCHALNRPKQLDDRVSGTSTPNLGSTTS-----LADVDSV---KQVGGSTPDKIPASASGSPVAARVE 392
[Close]
BLAST of XM_017401349.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7G6Q7 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})

HSP 1 Score: 499.59 bits (1285), Expect = 1.646e-174
Identity = 271/402 (67.41%), Postives = 311/402 (77.36%), Query Frame = 0
 
Query:    1 MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLE----GSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDR--ASDSSSPVAAAVE 396
            MA +  K+  +VAE     S+T +EEKT KKKK+G  S IWN +FR   DDFEKRLQHISKEEAA++AR+ +RS N R +T++LI+ SV+ E+ AV YAIMTTRSL+LNWKMRALRV PMFLLP LS ++YSAI SFTRM +RKDQKTLE+LRAER  KI ELKEKTNYYITQQLIQRYDPDPAAKAAAAT+LASKLG D+GLK+Y+GDD+K N  TGKS+ VE VQS+GLRNRKQ  +RSSS  SAV+     EM+Q A  EGSDM +H Q VVEH NPT    QDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKED+PYITYYCPHC+ALNRPKQL+    G+S P     +S     L  VD V   + VS  T D+  AS S SPVAA VE
Sbjct:    1 MAAEPTKEHIDVAETEPVASSTDNEEKTKKKKKKGFFSMIWNSLFRSKKDDFEKRLQHISKEEAAVIARINKRSQNWRRMTRHLIVLSVIFEVIAVGYAIMTTRSLELNWKMRALRVLPMFLLPGLSFITYSAIGSFTRMCERKDQKTLEKLRAERQAKIEELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNGVEVVQSNGLRNRKQ--ARSSSPESAVIDHPGAEMLQQAQLEGSDMMQHQQTVVEHYNPTGSSTQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPYITYYCPHCHALNRPKQLDDRVSGTSTPNLGSTTS-----LADVDSV---KQVSGSTPDKIPASASGSPVAAPVE 392
[Close]
BLAST of XM_017401349.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3CMU7 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})

HSP 1 Score: 493.812 bits (1270), Expect = 3.680e-172
Identity = 264/398 (66.33%), Postives = 310/398 (77.89%), Query Frame = 0
 
Query:    1 MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDR--ASDSSSPVAAAVE 396
            MA +  K+  +VA+      AT +EEKT K+KK+G  SR+WN +FR   DDFEKRLQHISKEEAA++AR+ +RS N R +T++LII SVL E+ AV YAIMTTRSL+L+WKMRALRV PMFLLP LS L+YSAI SFT+M +RKDQKTLE+LRAER  KI ELKEKTNYYITQQLIQRYDPDPAAKAAAAT+LASKLG D+GLK+Y+GDD+K N  TGKS+DVE VQS+GLRNRKQ  +RSSS  SAVM     EM+Q+   EGSDM +H QMVVEH NPT   +QDGGW+ARIAALLVGEDPTQSYALICGNCHMHNGLARKED+P+ITYYCPHC+ALNRPKQL+       S   +P  G    + +V + + V   T D+  AS S SPVA  VE
Sbjct:    1 MAAEPTKEHVDVADTEPVTLATDNEEKTKKEKKKGFFSRMWNSIFRSKKDDFEKRLQHISKEEAAVIARINKRSQNWRRMTRHLIILSVLFEVIAVGYAIMTTRSLELDWKMRALRVLPMFLLPGLSFLTYSAIGSFTKMCERKDQKTLEKLRAERQAKIEELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNDVEVVQSTGLRNRKQ--ARSSSPESAVMDHPGTEMLQNTQLEGSDMTQHQQMVVEHYNPTGSSSQDGGWLARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPFITYYCPHCHALNRPKQLDDR----VSGTGTPNLGSATALADVHLVKQVGGSTPDKIPASASGSPVATPVE 392
[Close]
BLAST of XM_017401349.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IL11 ((Putative ovule protein {ECO:0000313|EMBL:JAP33333.1}))

HSP 1 Score: 493.426 bits (1269), Expect = 1.409e-171
Identity = 253/396 (63.89%), Postives = 306/396 (77.27%), Query Frame = 0
 
Query:    1 MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDRASDSSSPVAAAVE 396
            MAT+S+ D  + A  A  +++T +E KT KKKK+G+LSR+WN +F  H DDFEKRLQHISKEEAA++AR  +RS + R ++++LII SVL E+ AV YA+MTTRSL+LNWKMRALRV PMFLLP LS  +YS + SFTRM +++DQKTLERLRAER  KI+ELKEKTN+YITQQLIQRYDPDPA+KAAAAT+LASKLGAD+GLK+Y+GD+SK N   G S+DVE +Q +GLRNRKQ  +RS S  SAV+   EGEM+     EGS M +H QM+VEH NPTS+ AQDGGW+ARIAALLVGEDPTQSYALIC NCHMHNGLARKE+ PYITYYCPHCNALN PKQL   +   SSL++   +  +   D V  D   S   ++R S SSSP A   E
Sbjct:    1 MATESENDLGDTAGTA-PVTSTDNEAKTKKKKKKGLLSRMWNSLFGSHKDDFEKRLQHISKEEAAVIARTVKRSHSWRRMSRHLIILSVLFEVIAVAYAVMTTRSLELNWKMRALRVLPMFLLPGLSFFTYSTLRSFTRMXEQRDQKTLERLRAERQAKIDELKEKTNFYITQQLIQRYDPDPASKAAAATVLASKLGADTGLKVYLGDESKFNAPAGTSNDVEILQYAGLRNRKQ--ARSGSAGSAVLDHREGEMLHDVQLEGSSMNQHQQMIVEHYNPTSVSAQDGGWLARIAALLVGEDPTQSYALICSNCHMHNGLARKEELPYITYYCPHCNALNGPKQLADGA---SSLLNMASTTIVADADLVKQD---SGSIAERDSTSSSPAAETTE 387
[Close]
BLAST of XM_017401349.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2ZPK7 ((uncharacterized protein At2g24330-like {ECO:0000313|RefSeq:XP_016569583.1}))

HSP 1 Score: 489.189 bits (1258), Expect = 1.922e-170
Identity = 261/398 (65.58%), Postives = 308/398 (77.39%), Query Frame = 0
 
Query:    1 MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDR--ASDSSSPVAAAVE 396
            MA +  K+  +VA+      AT +EEK  K+KK+G  SR+WN +FR   DDFEKRLQHISKEEAA++AR+ +RS N R +T++LII SVL E+ AV YAIMTTRSL+L+WKMRALRV PMFLLP LS L+YSAI SFT+M +RKDQKTL++LRAER  KI ELKEKTNYYITQQLIQRYDPDPAAKAAAAT+LASKLG D+GLK+Y+GDD+K N  TGKS+DVE VQS+GLRNRKQ  +RSSS  SAVM     EM+Q+   EGSDM +H Q VVEH NPT   +QDGGW+ARIAALLVGEDPTQSYALICGNCHMHNGLARKED+P+ITYYCPHC+ALNRPKQL+       S   +P  G    + +V + + V   T D+  AS S SPVA  VE
Sbjct:    1 MAAEPTKEHVDVADTEPVTLATDNEEKIKKEKKKGFFSRMWNSIFRSKKDDFEKRLQHISKEEAAVIARINKRSQNWRRMTRHLIILSVLFEVIAVGYAIMTTRSLELDWKMRALRVLPMFLLPGLSFLTYSAIGSFTKMCERKDQKTLKKLRAERQAKIEELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNDVEVVQSTGLRNRKQ--ARSSSPESAVMDHPGTEMLQNTQLEGSDMTQHQQTVVEHYNPTGSSSQDGGWLARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPFITYYCPHCHALNRPKQLDDR----VSGTGTPNLGSATALADVHLVKQVGGSTPDKIPASASGSPVATPVE 392
[Close]
BLAST of XM_017401349.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8GLG0 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})

HSP 1 Score: 489.189 bits (1258), Expect = 1.922e-170
Identity = 261/398 (65.58%), Postives = 308/398 (77.39%), Query Frame = 0
 
Query:    1 MATDSKKDQKEVAEIAGDLSATASEEKTMKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDSKLNPSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVMQQLEGEMMQHAATEGSDMARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLEGSSPPGSSLVSSPISGPLKPVDEVSVDQNVSKPTSDR--ASDSSSPVAAAVE 396
            MA +  K+  +VA+      AT +EEK  K+KK+G  SR+WN +FR   DDFEKRLQHISKEEAA++AR+ +RS N R +T++LII SVL E+ AV YAIMTTRSL+L+WKMRALRV PMFLLP LS L+YSAI SFT+M +RKDQKTL++LRAER  KI ELKEKTNYYITQQLIQRYDPDPAAKAAAAT+LASKLG D+GLK+Y+GDD+K N  TGKS+DVE VQS+GLRNRKQ  +RSSS  SAVM     EM+Q+   EGSDM +H Q VVEH NPT   +QDGGW+ARIAALLVGEDPTQSYALICGNCHMHNGLARKED+P+ITYYCPHC+ALNRPKQL+       S   +P  G    + +V + + V   T D+  AS S SPVA  VE
Sbjct:    1 MAAEPTKEHVDVADTEPVTLATDNEEKIKKEKKKGFFSRMWNSIFRSKKDDFEKRLQHISKEEAAVIARINKRSQNWRRMTRHLIILSVLFEVIAVGYAIMTTRSLELDWKMRALRVLPMFLLPGLSFLTYSAIGSFTKMCERKDQKTLKKLRAERQAKIEELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNDVEVVQSTGLRNRKQ--ARSSSPESAVMDHPGTEMLQNTQLEGSDMTQHQQTVVEHYNPTGSSSQDGGWLARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPFITYYCPHCHALNRPKQLDDR----VSGTGTPNLGSATALADVHLVKQVGGSTPDKIPASASGSPVATPVE 392
[Close]
BLAST of XM_017401349.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QL55 (zinc_ribbon_10 domain-containing protein {ECO:0000259|Pfam:PF10058})

HSP 1 Score: 489.574 bits (1259), Expect = 2.097e-170
Identity = 272/415 (65.54%), Postives = 320/415 (77.11%), Query Frame = 0
 
Query:   14 EIAGDLSATASEEKT--MKKKKRGILSRIWNWVFRLHGDDFEKRLQHISKEEAAIVARLKRRSINRRGVTKYLIIFSVLLELFAVCYAIMTTRSLDLNWKMRALRVSPMFLLPVLSSLSYSAIVSFTRMRDRKDQKTLERLRAERLEKINELKEKTNYYITQQLIQRYDPDPAAKAAAATILASKLGADSGLKLYMGDDS-KLN-PSTGKSSDVENVQSSGLRNRKQQLSRSSSGSSAVM--QQLEGEMMQHAATEGSD----MARHDQMVVEHENPTSLHAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDYPYITYYCPHCNALNRPKQLE-GSSPPGSS--LVSS-PISGPLKPVDEVSVDQNVSKPTSDR--ASDSSSPV-AAAVENREATETRVCEGEVS 411
            E + D  AT ++E    +KKK+RG++SRIWN +FRLHGDDFEKRLQHISKEEA+++AR+K+RS + R + ++LIIFSV+ E+ AV YAIMTTRSL+LNWKMRA RV PMFLLP LSS++YSA VSFTRM DRKDQKTLERLRAER EKI+ELKEKTNYYITQQLIQRYDPDPAAKAAAAT+LASKLGADSGLK+Y+GD+S KLN PSTGKS+DVE VQSSGLRNRKQ   +S S + + M  Q    E   H  + GS+     + H+Q+VV+H NP S  A DGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKED+PYITYYCPHCNALNR    E G S   +S  +VSS   +G + P +  SV        +DR   + SS+PV AAAVE  EATE  V   ++S
Sbjct:    4 ESSKDAPATDNKESVTIVKKKQRGLISRIWNGLFRLHGDDFEKRLQHISKEEASVLARMKKRSQSWRRMIRHLIIFSVIFEVIAVGYAIMTTRSLELNWKMRAFRVLPMFLLPGLSSITYSAFVSFTRMCDRKDQKTLERLRAERQEKIDELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGADSGLKVYVGDESTKLNAPSTGKSNDVELVQSSGLRNRKQLHPKSCSPTESTMLLQHSAEEEALHNTSPGSEGPETSSMHNQLVVDHYNPGSA-AHDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPYITYYCPHCNALNRSNHAEDGVSDSSNSPNMVSSVTTAGNINPTNAGSVTM------TDRMIPASSSNPVAAAAVETMEATERIVASADLS 411
Match NameStatsDescription
B9SPU2E-Value: 4.653e-180, PID: 66.67zinc_ribbon_10 domain-containing protein {ECO:0000... [more]
A0A4S4DJA8E-Value: 9.509e-177, PID: 65.21zinc_ribbon_10 domain-containing protein {ECO:0000... [more]
A0A7J7GVM6E-Value: 1.108e-176, PID: 65.21zinc_ribbon_10 domain-containing protein {ECO:0000... [more]
A0A6N2BQM9E-Value: 9.290e-176, PID: 67.66zinc_ribbon_10 domain-containing protein {ECO:0000... [more]
A0A3Q7G6Q7E-Value: 1.646e-174, PID: 67.41zinc_ribbon_10 domain-containing protein {ECO:0000... [more]
A0A2G3CMU7E-Value: 3.680e-172, PID: 66.33zinc_ribbon_10 domain-containing protein {ECO:0000... [more]
A0A0V0IL11E-Value: 1.409e-171, PID: 63.89(Putative ovule protein {ECO:0000313|EMBL:JAP33333... [more]
A0A2G2ZPK7E-Value: 1.922e-170, PID: 65.58(uncharacterized protein At2g24330-like {ECO:00003... [more]
A0A1U8GLG0E-Value: 1.922e-170, PID: 65.58zinc_ribbon_10 domain-containing protein {ECO:0000... [more]
A0A2R6QL55E-Value: 2.097e-170, PID: 65.54zinc_ribbon_10 domain-containing protein {ECO:0000... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.