Resource Type:
Polypeptide
Name:
XM_017401353.1
Identifier:
XM_017401353.1-protein
Sequence:
MPCFSACFGKQTASPLEQAIDIEEGTWLSVIAVSKVSSIQNIKIYPYKEL
QIATSYFSAANKIGEGGFGSVYKGKLKDGTLVAIKVLSAESRQGVREFLT
ELVIISDIEHENLVKIYGCCVEGVHRILVYGYLENNSLAQTLLGDGHCAI
EFSWKKRKEICIGIARGLAYLHEDIQPHIVHRDIKASNILLDENLTAKIS
DFGLAKLIPAHLTHISTQVAGTLGYLAPEYAIRGQLTRKADVYSLGMLLL
EIVCGRRNRDSRLPPKEKFLLELAWELYQEQDIVGLVDASLNGKFSLNEA
SRYIKIAFLCTQAAPRSRPLMSDVVNMLKGDIDVSEMEISKPGLLSELSR
TYKSTPYESSIGSGKPDDVFLSMNEMSCGTMTFTSIEDGRD
Sequence Length:
391
Sequence Checksum:
6b9a5ece02e55fcc7dc168e163d56644
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017401353.1, derives from mRNA, XM_017401353.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017401353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017401353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZV01 ((Putative serine/threonine-protein kinase {ECO:0000313|EMBL:MPA47805.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA47805.1}))
HSP 1 Score: 513.457 bits (1321), Expect = 1.455e-180
Identity = 255/391 (65.22%), Postives = 305/391 (78.01%), Query Frame = 0
Match: A0A5B6ZV01 ((Putative serine/threonine-protein kinase {ECO:0000313|EMBL:MPA47805.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA47805.1}))
HSP 1 Score: 513.457 bits (1321), Expect = 1.455e-180
Identity = 255/391 (65.22%), Postives = 305/391 (78.01%), Query Frame = 0
Query: 1 MPCFSACFGKQTASPLEQAIDIEEGTWLSVIAVSKVSSIQNIKIYPYKELQIATSYFSAANKIGEGGFGSVYKGKLKDGTLVAIKVLSAESRQGVREFLTELVIISDIEHENLVKIYGCCVEGVHRILVYGYLENNSLAQTLLGDGHCAIEFSWKKRKEICIGIARGLAYLHEDIQPHIVHRDIKASNILLDENLTAKISDFGLAKLIPAHLTHISTQVAGTLGYLAPEYAIRGQLTRKADVYSLGMLLLEIVCGRRNRDSRLPPKEKFLLELAWELYQEQDIVGLVDASLNGKFSLNEASRYIKIAFLCTQAAPRSRPLMSDVVNMLKGDIDVSEMEISKPGLLSELS--RTYKSTPYESSIGSGKPDD-VFLSMNEMSCGTMTFTSIED 388
M C S CF ++ ASP ++ IDIEE +VS IQN+K+Y YKELQIAT FS+ANKIGEGGFGSVYKG+LKDG + AIKVLS ESRQG+REFLTE+ +ISD+EHENLVK+YGCCVEG RILVYGYLENNSLAQTLLG GH I+FSWK R +ICIG+ARGLA+LHE++QPHIVHRDIKASN+LLD++LT KISDFGLAKL P +LTHIST+VAGT GYLAPEYAIRGQLTRKAD+YS G+LLLEIV GR N + +LP +E++LLE WEL++ +VGLVD SL G ++EA R++KI LCTQ P+ RP MS VV ML G++DV +IS+PGL+SEL ++ K+T Y S SGK D+ SC TMTFTSI D
Sbjct: 1 MTCISLCFKRKVASPTKRTIDIEE----------EVSGIQNVKLYTYKELQIATEDFSSANKIGEGGFGSVYKGQLKDGPMAAIKVLSGESRQGLREFLTEITVISDVEHENLVKLYGCCVEGSQRILVYGYLENNSLAQTLLGRGHRNIQFSWKTRCKICIGVARGLAFLHEEVQPHIVHRDIKASNVLLDKDLTPKISDFGLAKLFPPNLTHISTRVAGTFGYLAPEYAIRGQLTRKADIYSFGVLLLEIVSGRCNTNKQLPVEEQYLLERVWELHERGKLVGLVDKSLKGDCDVDEACRFLKIGLLCTQDMPKLRPSMSTVVKMLTGEMDVDGQKISRPGLMSELMGLKSKKNTSYVLSASSGKHDNSSSSEKTSASCATMTFTSIYD 381
BLAST of XM_017401353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ABS1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 505.368 bits (1300), Expect = 2.626e-177
Identity = 250/394 (63.45%), Postives = 305/394 (77.41%), Query Frame = 0
Match: A0A5J5ABS1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 505.368 bits (1300), Expect = 2.626e-177
Identity = 250/394 (63.45%), Postives = 305/394 (77.41%), Query Frame = 0
Query: 1 MPCFSACFGKQTASPLEQAIDIEEGTWLSVIAVSKVSSIQNIKIYPYKELQIATSYFSAANKIGEGGFGSVYKGKLKDGTLVAIKVLSAESRQGVREFLTELVIISDIEHENLVKIYGCCVEGVHRILVYGYLENNSLAQTLLGDGHCAIEFSWKKRKEICIGIARGLAYLHEDIQPHIVHRDIKASNILLDENLTAKISDFGLAKLIPAHLTHISTQVAGTLGYLAPEYAIRGQLTRKADVYSLGMLLLEIVCGRRNRDSRLPPKEKFLLELAWELYQEQDIVGLVDASLNGKFSLNEASRYIKIAFLCTQAAPRSRPLMSDVVNMLKG--DIDVSEMEISKPGLLSEL----SRTYKSTPYESSIGSGKPDDVFLSMNEMSCGTMTFTSIED 388
M CFS CF ++ ASP ++ IDIEE +VS IQN+K+Y YKELQIAT FS+ANKIGEGGFGSVYKGKLKDG++ AIKVLS ESRQG+REFLTE+ +ISD+EHENLVK+YGCCVE RILVYGYLENNSLA TLLG G +I+FSWK R +ICIG+ARGLA+LHE++QPHIVHRDIKASN+LLD+++T KISDFGLAKL P+++THIST+VAGT GYLAPEYAIRGQLTRKAD+YS G+LLLEIV GR N D +LP +E++LLE AWEL++ ++VGLVD + G F +NEA R++KI LCTQ P+ RP MS VV ML G D+DV + ++SKPGL+SEL + KS +S G+ + + S TMTFTSI D
Sbjct: 1 MTCFSVCFKRKVASPTQRTIDIEE----------EVSGIQNVKLYTYKELQIATEDFSSANKIGEGGFGSVYKGKLKDGSMAAIKVLSGESRQGLREFLTEITVISDVEHENLVKLYGCCVERSQRILVYGYLENNSLAHTLLGGGRSSIQFSWKTRCKICIGVARGLAFLHEEVQPHIVHRDIKASNVLLDKDVTPKISDFGLAKLFPSNVTHISTRVAGTFGYLAPEYAIRGQLTRKADIYSFGVLLLEIVSGRCNTDKQLPVEEQYLLERAWELHERGELVGLVDTFMKGDFDVNEACRFLKIGLLCTQEMPKLRPSMSTVVKMLTGEMDVDVDDQKLSKPGLMSELMGLKNNKNKSNTISASSGN-QTNSSSSENTSTSYATMTFTSIYD 383
BLAST of XM_017401353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4WEI2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 495.738 bits (1275), Expect = 1.559e-173
Identity = 251/395 (63.54%), Postives = 304/395 (76.96%), Query Frame = 0
Match: V4WEI2 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 495.738 bits (1275), Expect = 1.559e-173
Identity = 251/395 (63.54%), Postives = 304/395 (76.96%), Query Frame = 0
Query: 1 MPCFSACFGKQTASPLEQAIDIEEGTWLSVIAVSKVSSIQNIKIYPYKELQIATSYFSAANKIGEGGFGSVYKGKLKDGTLVAIKVLSAESRQGVREFLTELVIISDIEHENLVKIYGCCVEGVHRILVYGYLENNSLAQTLLGDGHCAIEFSWKKRKEICIGIARGLAYLHEDIQPHIVHRDIKASNILLDENLTAKISDFGLAKLIPAHLTHISTQVAGTLGYLAPEYAIRGQLTRKADVYSLGMLLLEIVCGRRNRDSRLPPKEKFLLELAWELYQEQDIVGLVDASLNGKFSLNEASRYIKIAFLCTQAAPRSRPLMSDVVNMLKGDIDVSEMEISKPGLLSEL--SRTYKSTPYESSIGSG---KPDDVFLSMNEM--SCGTMTFTSIED 388
M CF F ++ AS +++ + VS IQ+ +Y YK+L++AT FS ANKIG+GGFGSVYKG LKDGTL AIKVLSA+SRQGVREFLTE+ +I DI+HENLV++YGCCVEG HRILVYGYLENNSLAQTLLG GH +I+F+W+ R+ ICIG+A+GLA+LHE++QPHIVHRDIKASNILLD++LT KISDFGLAKL PA+LTHIST+VAGT GYLAPEYAIRGQLTRKAD+YS G+LLLEIV GR N + RLP +E++LLE+AW+LY+ +V LVDASLNG +S+ EA RY+KIA LCTQ P+ RP MS +VNML G+IDV++ EISKPGLLS+L R K ++S SG K D S M S TMTF SI D
Sbjct: 1 MTCFHLFFRRKRASSATHRVEVNK----------DVSEIQDTNLYGYKDLRVATENFSPANKIGQGGFGSVYKGTLKDGTLAAIKVLSADSRQGVREFLTEINVIKDIKHENLVELYGCCVEGDHRILVYGYLENNSLAQTLLGRGHSSIQFNWQTRRNICIGVAKGLAFLHEEVQPHIVHRDIKASNILLDKDLTPKISDFGLAKLFPANLTHISTRVAGTEGYLAPEYAIRGQLTRKADIYSFGVLLLEIVSGRCNTNRRLPYEEQYLLEMAWKLYERGKLVELVDASLNGDYSVEEAHRYLKIALLCTQDMPKRRPSMSTLVNMLIGEIDVNKEEISKPGLLSDLLGLRVDKGEKDKASAVSGDSSKLDHSSFSSGNMTTSYATMTFNSIFD 385
BLAST of XM_017401353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5QLI1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 496.893 bits (1278), Expect = 2.996e-173
Identity = 252/395 (63.80%), Postives = 304/395 (76.96%), Query Frame = 0
Match: A0A2H5QLI1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 496.893 bits (1278), Expect = 2.996e-173
Identity = 252/395 (63.80%), Postives = 304/395 (76.96%), Query Frame = 0
Query: 1 MPCFSACFGKQTASPLEQAIDIEEGTWLSVIAVSKVSSIQNIKIYPYKELQIATSYFSAANKIGEGGFGSVYKGKLKDGTLVAIKVLSAESRQGVREFLTELVIISDIEHENLVKIYGCCVEGVHRILVYGYLENNSLAQTLLGDGHCAIEFSWKKRKEICIGIARGLAYLHEDIQPHIVHRDIKASNILLDENLTAKISDFGLAKLIPAHLTHISTQVAGTLGYLAPEYAIRGQLTRKADVYSLGMLLLEIVCGRRNRDSRLPPKEKFLLELAWELYQEQDIVGLVDASLNGKFSLNEASRYIKIAFLCTQAAPRSRPLMSDVVNMLKGDIDVSEMEISKPGLLSEL--SRTYKSTPYESSIGSG---KPDDVFLSMNEM--SCGTMTFTSIED 388
M CF F ++ AS +++ E VS IQ+ +Y YK+L++AT FS ANKIG+GGFGSVYKG LKDGTL AIKVLSA+SRQGVREFLTE+ +I DI+HENLV++YGCCVEG HRILVYGYLENNSLAQTLLG GH +I+F+W+ R+ ICIG+A+GLA+LHE++QPHIVHRDIKASNILLD++LT KISDFGLAKL PA+LTHIST+VAGT GYLAPEYAIRGQLTRKAD+YS G+LLLEIV GR N + RLP +E++LLE+AW+LY+ +V LVDASLNG +S+ EA RY+KIA LCTQ P+ RP MS +VNML G+IDV++ EISKPGLLS+L R K ++S SG K D S M S TMTF SI D
Sbjct: 55 MTCFHLFFRRKRASSATHRVEVNE----------DVSEIQDTNLYGYKDLRVATENFSPANKIGQGGFGSVYKGTLKDGTLAAIKVLSADSRQGVREFLTEINVIKDIKHENLVELYGCCVEGDHRILVYGYLENNSLAQTLLGRGHSSIQFNWQTRRNICIGVAKGLAFLHEEVQPHIVHRDIKASNILLDKDLTPKISDFGLAKLFPANLTHISTRVAGTEGYLAPEYAIRGQLTRKADIYSFGVLLLEIVSGRCNTNRRLPYEEQYLLEMAWKLYERGKLVELVDASLNGDYSVEEAHRYLKIALLCTQDMPKRRPSMSTLVNMLIGEIDVNKEEISKPGLLSDLLGLRVDKGEKDKASAVSGDSSKLDHSSFSSGNMTTSYATMTFNSIFD 439
BLAST of XM_017401353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QCK6 ((LRR receptor-like serine/threonine-protein kinase {ECO:0000313|EMBL:PSS05857.1}))
HSP 1 Score: 494.582 bits (1272), Expect = 3.062e-173
Identity = 247/393 (62.85%), Postives = 298/393 (75.83%), Query Frame = 0
Match: A0A2R6QCK6 ((LRR receptor-like serine/threonine-protein kinase {ECO:0000313|EMBL:PSS05857.1}))
HSP 1 Score: 494.582 bits (1272), Expect = 3.062e-173
Identity = 247/393 (62.85%), Postives = 298/393 (75.83%), Query Frame = 0
Query: 1 MPCFSACFGKQTASPLEQAIDIEEGTWLSVIAVSKVSSIQNIKIYPYKELQIATSYFSAANKIGEGGFGSVYKGKLKDGTLVAIKVLSAESRQGVREFLTELVIISDIEHENLVKIYGCCVEGVHRILVYGYLENNSLAQTLLGDGHCAIEFSWKKRKEICIGIARGLAYLHEDIQPHIVHRDIKASNILLDENLTAKISDFGLAKLIPAHLTHISTQVAGTLGYLAPEYAIRGQLTRKADVYSLGMLLLEIVCGRRNRDSRLPPKEKFLLELAWELYQEQDIVGLVDASLNGKFSLNEASRYIKIAFLCTQAAPRSRPLMSDVVNMLKGDIDVSEMEISKPGLLSELS--RTYKSTPYESSIGSGKPDDVFLSMNEMSCGTMTFTSIEDGRD 391
M CFS CFGK+ ASP++ IDI E +VSS+QNIK Y Y EL IATS FS +NKIGEGGFGSVYKG+LKDGT+VAIKVLSAESRQG+REFLTE+ IISD+EHENLVK+ GCCVEG HRILVY Y+ENNSLAQTLLG GH I FSWK R +ICIG+ARGLA+LHE++QPHIVHRDIKASN+LLD++LT KISDFGLAKL P ++THIST+VAGTLGYLAPEYAIRGQLTRKADVYS G+LLLEIV GR N + RLP +E++LLE AWELY + ++ LVD + G ++EA ++++I LCTQ + RP MS VV +L G++DV E +I+KPGL+ EL + K + S S +D S TMT+ S+ D D
Sbjct: 1 MTCFSVCFGKKLASPVKHTIDINE----------EVSSVQNIKQYTYLELNIATSGFSPSNKIGEGGFGSVYKGRLKDGTMVAIKVLSAESRQGLREFLTEITIISDVEHENLVKLAGCCVEGSHRILVYEYMENNSLAQTLLGGGHSNITFSWKTRSKICIGVARGLAFLHEEVQPHIVHRDIKASNVLLDKDLTPKISDFGLAKLFPPNMTHISTRVAGTLGYLAPEYAIRGQLTRKADVYSFGVLLLEIVSGRCNTNKRLPAEEQYLLERAWELYDKGELPKLVDILMEGDVDMDEACKFLRICLLCTQDITKLRPSMSKVVKLLTGEMDVDEEKITKPGLIPELKGLKGKKDSSNLLSADSKNVNDSSSGNMSTSYATMTYASLYDRSD 383
BLAST of XM_017401353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A0E9 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 490.345 bits (1261), Expect = 1.414e-171
Identity = 236/389 (60.67%), Postives = 302/389 (77.63%), Query Frame = 0
Match: A0A5B7A0E9 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 490.345 bits (1261), Expect = 1.414e-171
Identity = 236/389 (60.67%), Postives = 302/389 (77.63%), Query Frame = 0
Query: 1 MPCFSACFGKQTASPLEQAIDIEEGTWLSVIAVSKVSSIQNIKIYPYKELQIATSYFSAANKIGEGGFGSVYKGKLKDGTLVAIKVLSAESRQGVREFLTELVIISDIEHENLVKIYGCCVEGVHRILVYGYLENNSLAQTLLGDGHCAIEFSWKKRKEICIGIARGLAYLHEDIQPHIVHRDIKASNILLDENLTAKISDFGLAKLIPAHLTHISTQVAGTLGYLAPEYAIRGQLTRKADVYSLGMLLLEIVCGRRNRDSRLPPKEKFLLELAWELYQEQDIVGLVDASLNGKFSLNEASRYIKIAFLCTQAAPRSRPLMSDVVNMLKGDIDVSEMEISKPGLLSE-LSRTYKSTPYESSIGSGKPDDVFLSMNEMSCGTMTFTSIED 388
M CFS FG++ +Q ++++E ++S I N+ +Y YKEL+IAT FS NKIGEGGFGSVYKG+LK+G + AIKVLSAESRQG REFLTE+ +ISD EHENLVK+YGCCVE HRILVY YLENNSLAQTLLG H +I+FSW+ R ICIG+ARGLA+LHE+++PHIVHRDIKASNILLD++LT KISDFGLAKLIP ++TH+ST+VAGT+GYLAPEYAIRGQLTRKAD+YS G+LL+EIV GR N ++RLP +E++LLE AW+LY+ +++VGLVD +LNG F EA +++KI LCTQ AP+ RP MS VV ML G ++V + I+KPGL+S+ + +STP ++++ S + LS SC TMTFT++ D
Sbjct: 1 MSCFSCLFGRKVDLENKQPVELDE----------ELSGIHNVNLYTYKELRIATDDFSPTNKIGEGGFGSVYKGRLKNGKIAAIKVLSAESRQGAREFLTEIKVISDTEHENLVKLYGCCVEDNHRILVYNYLENNSLAQTLLGGSHSSIQFSWRTRTRICIGVARGLAFLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPPNMTHVSTRVAGTIGYLAPEYAIRGQLTRKADLYSFGVLLIEIVSGRCNTNTRLPVEEQYLLERAWDLYERRELVGLVDTALNGDFDAEEACKFLKIGLLCTQDAPKLRPSMSTVVKMLIGKMEVDDNNITKPGLISDFMDLKVRSTP-KTNVSSDNLGNSTLSSGTSSCATMTFTAVYD 378
BLAST of XM_017401353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067K8F1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 491.115 bits (1263), Expect = 6.078e-171
Identity = 243/399 (60.90%), Postives = 302/399 (75.69%), Query Frame = 0
Match: A0A067K8F1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 491.115 bits (1263), Expect = 6.078e-171
Identity = 243/399 (60.90%), Postives = 302/399 (75.69%), Query Frame = 0
Query: 1 MPCFSACFGKQTASPLEQAIDIEEGTWLSVIAVSKVSSIQNIKIYPYKELQIATSYFSAANKIGEGGFGSVYKGKLKDGTLVAIKVLSAESRQGVREFLTELVIISDIEHENLVKIYGCCVEGVHRILVYGYLENNSLAQTLLGDGHCAIEFSWKKRKEICIGIARGLAYLHEDIQPHIVHRDIKASNILLDENLTAKISDFGLAKLIPAHLTHISTQVAGTLGYLAPEYAIRGQLTRKADVYSLGMLLLEIVCGRRNRDSRLPPKEKFLLELAWELYQEQDIVGLVDASLNGKFSLNEASRYIKIAFLCTQAAPRSRPLMSDVVNMLKGDIDVSEMEISKPGLLSEL--------SRTYKSTPYESSIGSGKPDDVFLSMNE---MSCGTMTFTSIED 388
M CF + F K+ + P ++A +++E VSS+QN +Y YKEL+IAT F+ ANK+GEGGFGSVYKG LKDG++VAIKVLSA+SRQG+REFLTE+ +I+DIEHENLVK+YGCCVE HRILVYGYL+NNSLAQTLLG GH +I+FSW R +ICIG+A+GLA+LHE++ PHIVHRDIKASNILLDENL AKISDFGLAKL P ++THIST+VAGT GYLAPEYAIRGQLTRKAD+YS G+L+LEIVCGR N + RLPP+E++LLE WEL+++ ++ L+D SL+G + EA +Y+KI LCTQ P+ RP MS VV ML G+IDV++ +ISKPGLL+E + + S GS KP D LS + S TMTF SI D
Sbjct: 47 MTCFPSFFKKKGSPPTKRATEVDE----------VVSSVQNTNLYTYKELRIATENFNPANKVGEGGFGSVYKGVLKDGSVVAIKVLSADSRQGLREFLTEIKLIADIEHENLVKLYGCCVEEDHRILVYGYLKNNSLAQTLLGGGHSSIQFSWPTRCKICIGVAQGLAFLHEEVSPHIVHRDIKASNILLDENLMAKISDFGLAKLFPPNMTHISTRVAGTAGYLAPEYAIRGQLTRKADLYSFGVLILEIVCGRSNTNRRLPPEEQYLLERVWELHEKGELATLIDPSLHGDYDTEEACKYMKIGLLCTQDIPKLRPTMSTVVKMLTGEIDVNDYKISKPGLLAEFIAFRGSDKRKKANVSSTTGSAGSTKPGDDNLSSSSGMATSYATMTFNSIYD 435
BLAST of XM_017401353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: E0CSA7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 488.804 bits (1257), Expect = 6.535e-171
Identity = 246/396 (62.12%), Postives = 300/396 (75.76%), Query Frame = 0
Match: E0CSA7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 488.804 bits (1257), Expect = 6.535e-171
Identity = 246/396 (62.12%), Postives = 300/396 (75.76%), Query Frame = 0
Query: 1 MPCFSACFGKQTASPLEQAIDIEEGTWLSVIAVSKVSSIQNIKIYPYKELQIATSYFSAANKIGEGGFGSVYKGKLKDGTLVAIKVLSAESRQGVREFLTELVIISDIEHENLVKIYGCCVEGVHRILVYGYLENNSLAQTLLGDGHCAIEFSWKKRKEICIGIARGLAYLHEDIQPHIVHRDIKASNILLDENLTAKISDFGLAKLIPAHLTHISTQVAGTLGYLAPEYAIRGQLTRKADVYSLGMLLLEIVCGRRNRDSRLPPKEKFLLELAWELYQEQDIVGLVDASLNGKFSLNEASRYIKIAFLCTQAAPRSRPLMSDVVNMLKGDIDVSEMEISKPGLLSEL-------SRTYKSTPYESSIGSGKPDDVFLSMN-EMSCGTMTFTSIED 388
M CFS CF K+ AS + + ++++ VS IQN+ Y Y+EL+IAT FS ANKIGEGGFGSVYKG L+DGT+VAIKVLSA+SRQG+REFLTEL +IS IEHENLV++YGCCV+ RILVYGYLENNSLAQTLL GH I+FSWK R +ICIG+ARGLA+LHE++ PHIVHRDIKASNILLD++LT KISDFGLAKLIP TH+ST+VAGT GYLAPEYAIRGQLTRKAD+YS G+LLLEIVCGR N+++RL E FLLE+ WEL++ +++ VD SLNG F + E R++KI LCTQ P+SRP MS VV+ML G+ DV + IS+PGL+SEL ++ YKS +++ GSGK D+ LS S TMTF SI D
Sbjct: 1 MTCFSFCFRKKVASSITRTAEVDD----------VVSGIQNVNRYSYRELRIATQDFSLANKIGEGGFGSVYKGTLRDGTVVAIKVLSAQSRQGLREFLTELSVISVIEHENLVELYGCCVDEDQRILVYGYLENNSLAQTLLDGGHSGIQFSWKTRTKICIGVARGLAFLHEEVHPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPEDQTHVSTRVAGTTGYLAPEYAIRGQLTRKADIYSFGVLLLEIVCGRSNKNTRLAYGEHFLLEMVWELHERRELADAVDTSLNGDFDIEEVCRFLKIGLLCTQDMPKSRPTMSTVVSMLTGEADVDD-NISRPGLISELMGIKVGGAQRYKS---DTASGSGKLDNSSLSSGMPTSIATMTFNSIYD 382
BLAST of XM_017401353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067EAT9 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 489.574 bits (1259), Expect = 9.986e-171
Identity = 245/360 (68.06%), Postives = 292/360 (81.11%), Query Frame = 0
Match: A0A067EAT9 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 489.574 bits (1259), Expect = 9.986e-171
Identity = 245/360 (68.06%), Postives = 292/360 (81.11%), Query Frame = 0
Query: 36 VSSIQNIKIYPYKELQIATSYFSAANKIGEGGFGSVYKGKLKDGTLVAIKVLSAESRQGVREFLTELVIISDIEHENLVKIYGCCVEGVHRILVYGYLENNSLAQTLLGDGHCAIEFSWKKRKEICIGIARGLAYLHEDIQPHIVHRDIKASNILLDENLTAKISDFGLAKLIPAHLTHISTQVAGTLGYLAPEYAIRGQLTRKADVYSLGMLLLEIVCGRRNRDSRLPPKEKFLLELAWELYQEQDIVGLVDASLNGKFSLNEASRYIKIAFLCTQAAPRSRPLMSDVVNMLKGDIDVSEMEISKPGLLSEL--SRTYKSTPYESSIGSG---KPDDVFLSMNEM--SCGTMTFTSIED 388
VS IQ+ +Y YK+L++AT FS ANKIG+GGFGSVYKG LKDGTL AIKVLSA+SRQGVREFLTE+ +I DI+HENLV++YGCCVEG HRILVYGYLENNSLAQTLLG GH +I+F+W+ R+ ICIG+A+GLA+LHE++QPHIVHRDIKASNILLD++LT KISDFGLAKL PA+LTHIST+VAGT GYLAPEYAIRGQLTRKAD+YS G+LLLEIV GR N + RLP +E++LLE+AW+LY+ +V LVDASLNG +S+ EA RY+KIA LCTQ P+ RP MS +VNML G+IDV++ EISKPGLLS+L R K ++S SG K D S M S TMTF SI D
Sbjct: 53 VSEIQDTNLYGYKDLRVATENFSPANKIGQGGFGSVYKGTLKDGTLAAIKVLSADSRQGVREFLTEINVIKDIKHENLVELYGCCVEGDHRILVYGYLENNSLAQTLLGRGHSSIQFNWQTRRNICIGVAKGLAFLHEEVQPHIVHRDIKASNILLDKDLTPKISDFGLAKLFPANLTHISTRVAGTEGYLAPEYAIRGQLTRKADIYSFGVLLLEIVSGRCNTNRRLPYEEQYLLEMAWKLYERGKLVELVDASLNGDYSVEEAHRYLKIALLCTQDMPKRRPSMSTLVNMLIGEIDVNKEEISKPGLLSDLLGLRVDKGEKDKASAVSGDSSKLDHSSFSSGNMTTSYATMTFNSIFD 412
BLAST of XM_017401353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3XAU0 ((probable LRR receptor-like serine/threonine-protein kinase At1g56140 {ECO:0000313|RefSeq:XP_016437026.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 4.795e-170
Identity = 246/393 (62.60%), Postives = 308/393 (78.37%), Query Frame = 0
Match: A0A1S3XAU0 ((probable LRR receptor-like serine/threonine-protein kinase At1g56140 {ECO:0000313|RefSeq:XP_016437026.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 4.795e-170
Identity = 246/393 (62.60%), Postives = 308/393 (78.37%), Query Frame = 0
Query: 1 MPCFSACFGKQTASPLEQAI-DIEEGTWLSVIAVSKVSSIQNIKIYPYKELQIATSYFSAANKIGEGGFGSVYKGKLKDGTLVAIKVLSAESRQGVREFLTELVIISDIEHENLVKIYGCCVEGVHRILVYGYLENNSLAQTLLGDGHCAIEFSWKKRKEICIGIARGLAYLHEDIQPHIVHRDIKASNILLDENLTAKISDFGLAKLIPAHLTHISTQVAGTLGYLAPEYAIRGQLTRKADVYSLGMLLLEIVCGRRNRDSRLPPKEKFLLELAWELYQEQDIVGLVDASLNGKFSLNEASRYIKIAFLCTQAAPRSRPLMSDVVNMLKGDIDVSEMEISKPGLLSEL--SRTYKSTPYES-SIGSGKPDDVFLSMN-EMSCGTMTFTSIED 388
M CF C + ASP + +I+E ++S+I+N ++Y YKELQ AT F NKIG+GGFGSVYKG+LKDG L AIKVLS ES+QGV+EFLTE+ +IS+IEHENLVK+YGCC EG HRILVYGYLENNSLAQTLLG H +++FSWK R +ICIG+ARGLA+LHE++QP+IVHRDIKASNILLD +LT KISDFGLAKLIPA +TH+ST+VAGTLGYLAPEYAIRGQLTRKADVYS G+LLLEIV GR N + RLP ++++LLE AW+LY++ +++ LVD SL F+++EA R++K++ LCTQ P+SRP MS VV +L G+++V EIS+PG+LS+L R+ K+T +S S GSGK D SMN M+ GTMTFTSI D
Sbjct: 60 MTCFGLCL-RGIASPTHNNLTEIDE----------EISTIENARVYHYKELQAATEDFCPVNKIGKGGFGSVYKGRLKDGRLAAIKVLSVESKQGVKEFLTEIKVISNIEHENLVKLYGCCAEGDHRILVYGYLENNSLAQTLLGGAHSSLQFSWKTRTKICIGVARGLAFLHEEVQPYIVHRDIKASNILLDRDLTPKISDFGLAKLIPADMTHVSTRVAGTLGYLAPEYAIRGQLTRKADVYSFGILLLEIVSGRCNTNKRLPIEQQYLLERAWKLYKKGELIELVDTSLGDDFNVDEACRFLKVSLLCTQVMPKSRPSMSTVVKLLIGEMEVDAEEISEPGMLSDLLSLRSNKNTSSDSLSAGSGKQVDSSSSMNTTMTHGTMTFTSIND 441
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZV01 | E-Value: 1.455e-180, PID: 65.22 | (Putative serine/threonine-protein kinase {ECO:000... [more] |
| A0A5J5ABS1 | E-Value: 2.626e-177, PID: 63.45 | Protein kinase domain-containing protein {ECO:0000... [more] |
| V4WEI2 | E-Value: 1.559e-173, PID: 63.54 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A2H5QLI1 | E-Value: 2.996e-173, PID: 63.80 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A2R6QCK6 | E-Value: 3.062e-173, PID: 62.85 | (LRR receptor-like serine/threonine-protein kinase... [more] |
| A0A5B7A0E9 | E-Value: 1.414e-171, PID: 60.67 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A067K8F1 | E-Value: 6.078e-171, PID: 60.90 | Protein kinase domain-containing protein {ECO:0000... [more] |
| E0CSA7 | E-Value: 6.535e-171, PID: 62.12 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A067EAT9 | E-Value: 9.986e-171, PID: 68.06 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A1S3XAU0 | E-Value: 4.795e-170, PID: 62.60 | (probable LRR receptor-like serine/threonine-prote... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |