Resource Type:
Polypeptide
Name:
XM_017402631.1
Identifier:
XM_017402631.1-protein
Sequence:
MDLTKKRKLEDNGLLQPIFDLPTADVRKIISSFTTDQLLDIVQNAAVRHL
DVLDAVRSIADQDLSQRKLFIRGLGWDTTNENLAAIFSAYGELDEAVVIL
DKATGKSKGFGFLTYKHIDGAIRALKEPSKKIDGRMTVTNLASAGPGGGP
VMQQPVDVSNRKIYVANVPFEMPADRLLGFFLSYGEIEEGPLGFDKLTGK
SKGFALFVYKSEDGAKAALVEPIKNIDGVQLNCKLAIEGKKGKGGGGVQG
EVHGIGVGVGLQQGGVVQGSGVVGQYGGAGGVTGYGGVVYPGGLQGPSPQ
VQHSQNPSFAGVGGPGYSSLPSQVPTSIGYNGSYGSVAGVGAPYGSSQYG
GPGATGYGGLGGSATRMGAGVGGLGGAGLGAGGLGGAATGLGRSGAASGL
GGSASALGGSAAGLGGPGRMSSLYGLQPNSAGIAAGTYSDSAHYSLSGGS
AYQNQNNPTAGASPAARGPYSGMYPPRY
Sequence Length:
478
Sequence Checksum:
ebb2c30d0f8bb38067176be4c1fcb5c6
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017402631.1, derives from mRNA, XM_017402631.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017402631.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017402631.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5ADJ5 ((Uncharacterized protein {ECO:0000313|EMBL:CAN66609.1}))
HSP 1 Score: 403.675 bits (1036), Expect = 5.432e-135
Identity = 234/373 (62.73%), Postives = 270/373 (72.39%), Query Frame = 0
Match: A5ADJ5 ((Uncharacterized protein {ECO:0000313|EMBL:CAN66609.1}))
HSP 1 Score: 403.675 bits (1036), Expect = 5.432e-135
Identity = 234/373 (62.73%), Postives = 270/373 (72.39%), Query Frame = 0
Query: 1 MDLTKKRKLEDNGLL----QPIFDLPTADVRKIISSFTTDQLLDIVQNAAVRHLDVLDAVRSIADQDLSQRKLFIRGLGWDTTNENLAAIFSAYGELDEAVVILDKATGKSKGFGFLTYKHIDGAIRALKEPSKKIDGRMTVTNLASAGPGGGPVMQQPVDVSNRKIYVANVPFEMPADRLLGFFLSYGEIEEGPLGFDKLTGKSKGFALFVYKSEDGAKAALVEPIKNIDGVQLNCKLAIEGKKGKGGG------GVQGEV-HGIGVGVGLQQGGVVQGSGVVGQY-GGAGGVTGYGGVVYPGGLQGPSPQVQH----SQNPSFAGVGGPGYSSLPSQVPTSIGYNGSYGSVAGVGAPYGSSQYGGPGATGY 357
MD TKKRK+++NGL+ + L D RKII F DQLL+I+QNAAVRHLDVLDA+RSIAD+DL+QRKLFIRGLGWDTT E L +FSAYGEL+EAVVILDK T KSKG+GF+T+KH+DGA+ ALKEPSKKIDGRMTVT LA++G G VDVS RKIYVANVP +MPADRLL F SYGEIEEGPLGFDK TGKS+GFALFVYK+ + A+AALV+P K IDG QL CKLAIEGKKGK GG GV GE HG G+GV Q G + GS + QY GG GG++ YGG GP P H S PS G GGPG S SQVP+S+G + YG AG+G PYGS+ YGGP + GY
Sbjct: 1 MDATKKRKMDENGLVSTDGDSLTKLAPEDARKIIEPFGHDQLLEILQNAAVRHLDVLDAIRSIADRDLTQRKLFIRGLGWDTTTEGLRQLFSAYGELEEAVVILDKVTAKSKGYGFVTFKHVDGALLALKEPSKKIDGRMTVTQLAASGLSGPASNASAVDVSMRKIYVANVPVDMPADRLLAHFSSYGEIEEGPLGFDKQTGKSRGFALFVYKTAEAAQAALVDPTKMIDGRQLVCKLAIEGKKGKTGGPAQAPTGVPGEAGHGDGLGVPPQ--GSMPGS-LGSQYPGGPGGISAYGGFS-----GGPPPLGHHHPLNSSLPSSLG-GGPGLS---SQVPSSLGGSAGYG--AGLGGPYGSAHYGGPNSAGY 359
BLAST of XM_017402631.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438J4E7 ((UBP1-associated protein 2C {ECO:0000313|EMBL:RVX03832.1}))
HSP 1 Score: 403.675 bits (1036), Expect = 7.386e-135
Identity = 234/373 (62.73%), Postives = 270/373 (72.39%), Query Frame = 0
Match: A0A438J4E7 ((UBP1-associated protein 2C {ECO:0000313|EMBL:RVX03832.1}))
HSP 1 Score: 403.675 bits (1036), Expect = 7.386e-135
Identity = 234/373 (62.73%), Postives = 270/373 (72.39%), Query Frame = 0
Query: 1 MDLTKKRKLEDNGLL----QPIFDLPTADVRKIISSFTTDQLLDIVQNAAVRHLDVLDAVRSIADQDLSQRKLFIRGLGWDTTNENLAAIFSAYGELDEAVVILDKATGKSKGFGFLTYKHIDGAIRALKEPSKKIDGRMTVTNLASAGPGGGPVMQQPVDVSNRKIYVANVPFEMPADRLLGFFLSYGEIEEGPLGFDKLTGKSKGFALFVYKSEDGAKAALVEPIKNIDGVQLNCKLAIEGKKGKGGG------GVQGEV-HGIGVGVGLQQGGVVQGSGVVGQY-GGAGGVTGYGGVVYPGGLQGPSPQVQH----SQNPSFAGVGGPGYSSLPSQVPTSIGYNGSYGSVAGVGAPYGSSQYGGPGATGY 357
MD TKKRK+++NGL+ + L D RKII F DQLL+I+QNAAVRHLDVLDA+RSIAD+DL+QRKLFIRGLGWDTT E L +FSAYGEL+EAVVILDK T KSKG+GF+T+KH+DGA+ ALKEPSKKIDGRMTVT LA++G G VDVS RKIYVANVP +MPADRLL F SYGEIEEGPLGFDK TGKS+GFALFVYK+ + A+AALV+P K IDG QL CKLAIEGKKGK GG GV GE HG G+GV Q G + GS + QY GG GG++ YGG GP P H S PS G GGPG S SQVP+S+G + YG AG+G PYGS+ YGGP + GY
Sbjct: 1 MDATKKRKMDENGLVSTDGDSLTKLAPEDARKIIEPFGHDQLLEILQNAAVRHLDVLDAIRSIADRDLTQRKLFIRGLGWDTTTEGLRQLFSAYGELEEAVVILDKVTAKSKGYGFVTFKHVDGALLALKEPSKKIDGRMTVTQLAASGLSGPASNASAVDVSMRKIYVANVPVDMPADRLLAHFSSYGEIEEGPLGFDKQTGKSRGFALFVYKTAEAAQAALVDPTKMIDGRQLVCKLAIEGKKGKTGGPAQAPTGVPGEAGHGDGLGVPPQ--GSMPGS-LGSQYPGGPGGISAYGGFS-----GGPPPLGHHHPLNSSLPSSLG-GGPGLS---SQVPSSLGGSAGYG--AGLGGPYGSAHYGGPNSAGY 359
BLAST of XM_017402631.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8BKL7 ((UBP1-associated protein 2C {ECO:0000313|RefSeq:XP_010277758.1, ECO:0000313|RefSeq:XP_010277759.1}))
HSP 1 Score: 397.512 bits (1020), Expect = 8.276e-133
Identity = 260/503 (51.69%), Postives = 312/503 (62.03%), Query Frame = 0
Match: A0A1U8BKL7 ((UBP1-associated protein 2C {ECO:0000313|RefSeq:XP_010277758.1, ECO:0000313|RefSeq:XP_010277759.1}))
HSP 1 Score: 397.512 bits (1020), Expect = 8.276e-133
Identity = 260/503 (51.69%), Postives = 312/503 (62.03%), Query Frame = 0
Query: 1 MDLT-KKRKLEDNGLLQPIF----DLPTADVRKIISSFTTDQLLDIVQNAAVRHLDVLDAVRSIADQDLSQRKLFIRGLGWDTTNENLAAIFSAYGELDEAVVILDKATGKSKGFGFLTYKHIDGAIRALKEPSKKIDGRMTVTNLASAGPGGGPVMQQP-VDVSNRKIYVANVPFEMPADRLLGFFLSYGEIEEGPLGFDKLTGKSKGFALFVYKSEDGAKAALVEPIKNIDGVQLNCKLAIEGKKGKGG-------------GGVQGEVHGIGVGVGLQQGGVVQGSGVVGQYGGA-GGVTGYGGVVYPGGLQGPSP--QVQHSQNPSFAGVGGPGYSSLPSQVPTSIGYNGSYGSVAGVGAPYGSSQYGGPGATGYGGLGGSATRMGAGVGGLGGAGLGAGGLGGAATGLGRSGAASGLGGSASALGGSAAGLGGPGRMSSLYGLQPNSAGIAAGTYSDSAHYSLSGGSAYQNQNNPTAGASPAARGPYSGMY---PPRY 478
MDL+ KKRK ++NG + L D R+II FT +QLLDI+Q+AAVRHLDVLDAVR+IAD+DL+QRKLFIRGLGWDTT E L +FS YG+L+EAVVILDKATGKSKG+GF+T+KHIDGA+ ALKEPSKKIDGRMTVT LA+AG GP P VDVS RKIYV NVPF+MPADRLL F SYGEIEEGPLGFDK TGKS+GFALFVYK+ + AKA+LV+P K IDG Q+ CKLAIEGKK K G GV GEV G G+G + + GS + QYGGA G++ YGG + GG QGP H +P + +G PG SS+ +QVP+S+G +G YG+ G G+SQYGGP + GYGG L AGG SSLY L P+S G+ +G Y + HY L+ SAY Q++ +G SP R P GMY PP Y
Sbjct: 1 MDLSAKKRKADENGTVAADAALGSKLTLEDARRIIEPFTQEQLLDILQDAAVRHLDVLDAVRAIADRDLTQRKLFIRGLGWDTTTEGLRTLFSTYGDLEEAVVILDKATGKSKGYGFVTFKHIDGALLALKEPSKKIDGRMTVTQLAAAG-TSGPTANAPAVDVSLRKIYVGNVPFDMPADRLLAHFSSYGEIEEGPLGFDKQTGKSRGFALFVYKTAEAAKASLVDPTKTIDGHQMVCKLAIEGKKAKPGQPAPVGAQGVQAPTGVPGEVPGDGLG--MPPPSSMPGS-LTSQYGGAPAGLSSYGG--FSGGPQGPPALGHHHHLNSPLQSSIGAPGLSSVGTQVPSSLGGSGGYGAGLGGPY--GTSQYGGPASAGYGG-------------------LSAGG-------------------------------------SSLYRLPPSSVGMPSGGYPEGGHYGLT-SSAYPGQHHQPSGTSPVPRVPPGGMYQSMPPYY 438
BLAST of XM_017402631.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H9W7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5948644.1}))
HSP 1 Score: 382.104 bits (980), Expect = 2.067e-126
Identity = 229/389 (58.87%), Postives = 266/389 (68.38%), Query Frame = 0
Match: A0A7J7H9W7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5948644.1}))
HSP 1 Score: 382.104 bits (980), Expect = 2.067e-126
Identity = 229/389 (58.87%), Postives = 266/389 (68.38%), Query Frame = 0
Query: 1 MDLTKKRKLEDNGLLQPIFD-----LPTADVRKIISSFTTDQLLDIVQNAAVRHLDVLDAVRSIADQDLSQRKLFIRGLGWDTTNENLAAIFSAYGELDEAVVILDKATGKSKGFGFLTYKHIDGAIRALKEPSKKIDGRMTVTNLASAG--PGGGPVMQQPVDVSNRKIYVANVPFEMPADRLLGFFLSYGEIEEGPLGFDKLTGKSKGFALFVYKSEDGAKAALVEPIKNIDGVQLNCKLAIEGKKGK--------GGGGVQ------GEVHGIGVGVGLQQGGVVQGSGVVGQYGGAGGVTGYGGVVYPGGLQGPSPQVQHSQNPSFAGV-----------GGPGYSSLPSQVPTSIGYNGSYGSVAGVGAPYGSSQYGGPGATGY 357
MD KKRKL++NG+ P D L D RKII FT +QLL+IV+NAAVRHLDVLDAVRSIAD+D +QRKLFIRGLGWDTT E L ++FSAYG+LDE VVILDKATGKSKG+GF+T+KH+DGA+ ALKEPSKKIDGRMTVT LA+AG P P VDVS RKIYVANVP +MP DRLL FLSYGEIEEGPLGFDK TGKS+G+ALFVYK+ + A+A+LV+PIK IDG QLNCKLAI+GKKGK G GGVQ GE H G G+G+ + QYG V YGG + GGLQG H N S GV GP SS+ +Q P+S+G +G+YGS G G S YGGPG+T Y
Sbjct: 1 MDPIKKRKLDENGVALPDSDAGPNQLTVDDARKIIEPFTHEQLLEIVKNAAVRHLDVLDAVRSIADRDPAQRKLFIRGLGWDTTTEKLRSLFSAYGDLDEGVVILDKATGKSKGYGFVTFKHVDGALLALKEPSKKIDGRMTVTQLAAAGIQPTVNP--HSGVDVSARKIYVANVPHDMPGDRLLAHFLSYGEIEEGPLGFDKATGKSRGYALFVYKTVEAARASLVDPIKTIDGHQLNCKLAIDGKKGKPEMPVAAPGAGGVQGPTGVPGEAH--GNGLGMHHPPSSMPGSLAAQYGVP--VGSYGG--FSGGLQG-----HHPLNSSMVGVPGLSSVGGAAAAGPVLSSMGNQAPSSLGASGAYGSGLGGPY--GGSHYGGPGSTLY 374
BLAST of XM_017402631.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6VTU8 ((Ubp1-associated protein 2c {ECO:0000313|EMBL:KAF5187822.1}))
HSP 1 Score: 379.022 bits (972), Expect = 1.314e-125
Identity = 245/492 (49.80%), Postives = 294/492 (59.76%), Query Frame = 0
Match: A0A7J6VTU8 ((Ubp1-associated protein 2c {ECO:0000313|EMBL:KAF5187822.1}))
HSP 1 Score: 379.022 bits (972), Expect = 1.314e-125
Identity = 245/492 (49.80%), Postives = 294/492 (59.76%), Query Frame = 0
Query: 5 KKRKLEDNG---------LLQPIFDLPTADVRKIISSFTTDQLLDIVQNAAVRHLDVLDAVRSIADQDLSQRKLFIRGLGWDTTNENLAAIFSAYGELDEAVVILDKATGKSKGFGFLTYKHIDGAIRALKEPSKKIDGRMTVTNLASAGPGGGPVMQQPVDVSNRKIYVANVPFEMPADRLLGFFLSYGEIEEGPLGFDKLTGKSKGFALFVYKSEDGAKAALVEPIKNIDGVQLNCKLAIEGKKGKGGGGVQGEV----HGIGVGVGLQQGGVVQGSGVVGQYGGAGGV------TGYGGVVYPGGLQGPSPQVQHSQNPSF-AGVGGPGYSSLPSQVPTSIGYNGSYGSVAGVGAPYGSSQYGGPGATGYGGLGGSATRMGAGVGGLGGAGLGAGGLGGAATGLGRSGAASGLGGSASA-LGGSAAGLGGPGRMSSLYGLQPNSAGIAAGTYSDSAHYSLSGGSAYQNQNNPTAGASPAARGPYSGMYP 475
KKRK ++NG LL PI DV KII SFT +QL+DI+Q AA RHLDVL+++RSIAD+D +QRKLFIRGLGWDTT E L ++FSAYGEL+EAVVILDK TGKSKG+GF+T+KHIDGA+ ALKEPSKKIDGRMTVT +A+AG G + DVS RKIYV NVPFEMPADRLL FLSYGEIEEGPLG+DK TGKS+GFALFVYK+ + A+A+LV+P K IDG Q+ CKLAIEGKKGK GG G+ G G G + + S + QY GG+ + YGG Y G GP+ H S + +G G SS SQVP+S+ GV G G GLGG +GL +GG ASA GG A+ GG G SSLY L P S G+ + Y + HY LS SA+ Q + + +SPA R P MYP
Sbjct: 6 KKRKADENGTVITDGTTGLLTPI------DVGKIIESFTQEQLVDILQIAATRHLDVLESIRSIADRDPAQRKLFIRGLGWDTTTEGLRSLFSAYGELEEAVVILDKTTGKSKGYGFITFKHIDGALLALKEPSKKIDGRMTVTQIAAAGVSGPTAIPPSGDVSMRKIYVGNVPFEMPADRLLAHFLSYGEIEEGPLGYDKQTGKSRGFALFVYKTVEAARASLVDPQKTIDGHQMVCKLAIEGKKGKTGGAPAGQTAASGEGAGDGTAMHPPSSMPNS-LTSQYTAPGGLGVPGGLSSYGG--YNSGHPGPAGMAHHHLTSSLQSSIGATGLSSGGSQVPSSL-----------------------------------------GVSG------GYVGLGGPYSGL--------VGGPASAAYGGPASAYGGLGGASSLYRLPPGSVGLPSSGYPEGGHYGLS-SSAFPGQLHQQSASSPAPRVPTGAMYP 432
BLAST of XM_017402631.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4AU64 ((UBP1-associated protein 2C {ECO:0000313|RefSeq:XP_015899190.1}))
HSP 1 Score: 375.17 bits (962), Expect = 6.589e-124
Identity = 206/336 (61.31%), Postives = 245/336 (72.92%), Query Frame = 0
Match: A0A6P4AU64 ((UBP1-associated protein 2C {ECO:0000313|RefSeq:XP_015899190.1}))
HSP 1 Score: 375.17 bits (962), Expect = 6.589e-124
Identity = 206/336 (61.31%), Postives = 245/336 (72.92%), Query Frame = 0
Query: 1 MDLTKKRKLEDNGL--LQP-IFDLPTADVRKIISSFTTDQLLDIVQNAAVRHLDVLDAVRSIADQDLSQRKLFIRGLGWDTTNENLAAIFSAYGELDEAVVILDKATGKSKGFGFLTYKHIDGAIRALKEPSKKIDGRMTVTNLASAGPGGGPVMQQ-PVDVSNRKIYVANVPFEMPADRLLGFFLSYGEIEEGPLGFDKLTGKSKGFALFVYKSEDGAKAALVEPIKNIDGVQLNCKLAIEGKKGK---GGGGVQGEV----HGIGVGVGLQQGGVVQGSGVVGQYGGAGGVTGYGGVVYPGGLQGPSPQVQHSQNPSFAGVGGPGYSSLPSQVP 325
MDLTKKRK+E+NG P + L D RKII FT DQL++I+Q A H DVL+AVRS+AD D SQRKLFIRGLGWDTT E L A+FSAYGEL+EAVVILDK TGKSKG+GF+T++H+DGA+ ALKEPSKKIDGRMTVT LA+AG G VDVS RKIYVANVP++MPAD+LL F YGEIEEGPLGFDK TGK +G+ALFVYK+ +GA+AALV+P+K I+G QL CKLAI+GKKGK G G+Q V + G G+GL + GS + GQYGG G+ YGG + GGLQGP P H N S +GGPG SS+ +Q P
Sbjct: 1 MDLTKKRKMEENGAGDADPSVLKLTPEDARKIIERFTPDQLIEILQEAVAHHADVLEAVRSVADPDTSQRKLFIRGLGWDTTTEGLRALFSAYGELEEAVVILDKTTGKSKGYGFVTFRHVDGALLALKEPSKKIDGRMTVTQLAAAGNSGANTNSNAAVDVSLRKIYVANVPYDMPADKLLAHFSLYGEIEEGPLGFDKQTGKCRGYALFVYKTPEGAQAALVDPVKTIEGRQLTCKLAIDGKKGKQGSGADGIQAPVGGPGNAHGDGMGLAPPSSMPGS-IGGQYGGPAGIGSYGG--FSGGLQGP-PMGHHPLNSS---IGGPGLSSVGNQAP 329
BLAST of XM_017402631.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FG03 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFY97630.1}))
HSP 1 Score: 375.555 bits (963), Expect = 9.850e-124
Identity = 225/375 (60.00%), Postives = 267/375 (71.20%), Query Frame = 0
Match: A0A7J0FG03 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFY97630.1}))
HSP 1 Score: 375.555 bits (963), Expect = 9.850e-124
Identity = 225/375 (60.00%), Postives = 267/375 (71.20%), Query Frame = 0
Query: 1 MDLTKKRKLEDNGLLQPIF---DLPTADVRKIISSFTTDQLLDIVQNAAVRHLDVLDAVRSIADQDLSQRKLFIRGLGWDTTNENLAAIFSAYGELDEAVVILDKATGKSKGFGFLTYKHIDGAIRALKEPSKKIDGRMTVTNLASAGPGGGPVM--QQP-VDVSNRKIYVANVPFEMPADRLLGFFLSYGEIEEGPLGFDKLTGKSKGFALFVYKSEDGAKAALVEPIKNIDGVQLNCKLAIEGKKGK-----GGGGVQGEV----HGIGVGVGLQQGGVVQGSGVVGQYGGAGGVTGYGGVVYPGGLQGPSPQVQHS--QNPSFAGV-GGPGYSSLPSQVPTSIGYNGSYGSVAGVGAPYGSSQYGGPGATGY 357
MD TKKRKL++NG L D RKII SFT DQLL+IVQNAAVRH DVL++VRS+AD+D ++RKLFIRGLGWDTT E L A+F+AYG+L+EA+VILDKATGKSKG+GF+T +H+DGA+ ALKEPSKKIDGRMTVT LA+AG G PV QQP +D SNRKIYVANVP++MPADRLL FL+YGEIEEGPLGFDK TGKS+G+ALFVYK+ + AKA+LV+PIK IDG Q+NCKLA +GKKGK GGVQG V G G+G+ Q +QGS + GQYGG GV Y GG GP P H P + V GGPG S++ SQ G G +G+G Y S YGGPG+T Y
Sbjct: 1 MDPTKKRKLDENGQADSDCGPSQLTADDARKIIDSFTHDQLLEIVQNAAVRHHDVLESVRSVADRDPARRKLFIRGLGWDTTTEKLRALFAAYGDLEEAIVILDKATGKSKGYGFVTMEHVDGALLALKEPSKKIDGRMTVTQLAAAGIQGVPVANSQQPLLDASNRKIYVANVPYDMPADRLLAHFLAYGEIEEGPLGFDKATGKSRGYALFVYKTAEAAKASLVDPIKTIDGHQMNCKLASDGKKGKPEMGAAPGGVQGPVGVPGEAQGNGIGMHQPLAIQGS-LGGQYGGP-GVASY------GGFSGP-PMGHHPLGSGPGLSTVGGGPGLSTVGSQ--PQSSLGGGGGYGSGLGGSYSGSHYGGPGSTVY 364
BLAST of XM_017402631.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QCJ1 ((UBP1-associated protein like {ECO:0000313|EMBL:PSS05854.1}))
HSP 1 Score: 373.629 bits (958), Expect = 2.197e-123
Identity = 204/314 (64.97%), Postives = 240/314 (76.43%), Query Frame = 0
Match: A0A2R6QCJ1 ((UBP1-associated protein like {ECO:0000313|EMBL:PSS05854.1}))
HSP 1 Score: 373.629 bits (958), Expect = 2.197e-123
Identity = 204/314 (64.97%), Postives = 240/314 (76.43%), Query Frame = 0
Query: 1 MDLTKKRKLEDNGLLQPIFD-----LPTADVRKIISSFTTDQLLDIVQNAAVRHLDVLDAVRSIADQDLSQRKLFIRGLGWDTTNENLAAIFSAYGELDEAVVILDKATGKSKGFGFLTYKHIDGAIRALKEPSKKIDGRMTVTNLASAGPGGGPVM--QQPV-DVSNRKIYVANVPFEMPADRLLGFFLSYGEIEEGPLGFDKLTGKSKGFALFVYKSEDGAKAALVEPIKNIDGVQLNCKLAIEGKKGK-----GGGGVQGEV----HGIGVGVGLQQGGVVQGSGVVGQYGGAGGVTGYGGVVYPGGLQGP 297
MD KKRKL++NG Q D L D RKII SFT DQLL+IVQNA VRH DVL+AVRS+AD+D +QRKLFIRGLGWDTT E L A+F+AYG+++EA+VILDKATGKSKG+GF+T KH+DGA+ ALK+PSKKIDGRMTVT LA+AG GGPV QQPV D SNRKIYVANVP++MPADRLL FL+YGEIEEGPLGFDK TGK +G+ALFVYK+ + AKA+LV+PIK IDG Q+NCKLA +GKKGK GGVQG V G G+G+ Q + GS + GQ+GG GV YGG + GLQGP
Sbjct: 1 MDSIKKRKLDENG--QADSDGGPSQLTADDTRKIIDSFTHDQLLEIVQNATVRHHDVLEAVRSVADRDPAQRKLFIRGLGWDTTTEKLRALFAAYGDIEEAIVILDKATGKSKGYGFVTMKHVDGALLALKDPSKKIDGRMTVTQLAAAGIQGGPVANSQQPVADASNRKIYVANVPYDMPADRLLAHFLAYGEIEEGPLGFDKATGKLRGYALFVYKTAEAAKASLVDPIKTIDGHQMNCKLANDGKKGKTEMGAAPGGVQGPVGVPGEAQGNGIGMHQPPAMPGS-LGGQHGGP-GVASYGG--FSSGLQGP 308
BLAST of XM_017402631.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0G2X8 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFZ05131.1}))
HSP 1 Score: 373.244 bits (957), Expect = 7.173e-123
Identity = 204/314 (64.97%), Postives = 240/314 (76.43%), Query Frame = 0
Match: A0A7J0G2X8 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFZ05131.1}))
HSP 1 Score: 373.244 bits (957), Expect = 7.173e-123
Identity = 204/314 (64.97%), Postives = 240/314 (76.43%), Query Frame = 0
Query: 1 MDLTKKRKLEDNGLLQPIFD-----LPTADVRKIISSFTTDQLLDIVQNAAVRHLDVLDAVRSIADQDLSQRKLFIRGLGWDTTNENLAAIFSAYGELDEAVVILDKATGKSKGFGFLTYKHIDGAIRALKEPSKKIDGRMTVTNLASAGPGGGPVM--QQPV-DVSNRKIYVANVPFEMPADRLLGFFLSYGEIEEGPLGFDKLTGKSKGFALFVYKSEDGAKAALVEPIKNIDGVQLNCKLAIEGKKGK-----GGGGVQGEV----HGIGVGVGLQQGGVVQGSGVVGQYGGAGGVTGYGGVVYPGGLQGP 297
MD KKRKL++NG Q D L D RKII SFT DQLL+IVQNA VRH DVL+AVRS+AD+D +QRKLFIRGLGWDTT E L A+F+AYG+++EA+VILDKATGKSKG+GF+T KH+DGA+ ALK+PSKKIDGRMTVT LA+AG GGPV QQPV D SNRKIYVANVP++MPADRLL FL+YGEIEEGPLGFDK TGK +G+ALFVYK+ + AKA+LV+PIK IDG Q+NCKLA +GKKGK GGVQG V G G+G+ Q + GS + GQ+GG GV YGG + GLQGP
Sbjct: 1 MDPIKKRKLDENG--QADSDGGPSQLTADDTRKIIDSFTHDQLLEIVQNATVRHHDVLEAVRSVADRDPAQRKLFIRGLGWDTTTEKLRALFAAYGDIEEAIVILDKATGKSKGYGFVTMKHVDGALLALKDPSKKIDGRMTVTQLAAAGIQGGPVANSQQPVADASNRKIYVANVPYDMPADRLLAHFLAYGEIEEGPLGFDKATGKLRGYALFVYKTAEAAKASLVDPIKTIDGHQMNCKLANDGKKGKTEMGAAPGGVQGPVGVPGEAQGNGIGMHQPPAMPGS-LGGQHGGP-GVASYGG--FSSGLQGP 308
BLAST of XM_017402631.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835DM31 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8409018.1}))
HSP 1 Score: 370.548 bits (950), Expect = 3.418e-122
Identity = 205/344 (59.59%), Postives = 240/344 (69.77%), Query Frame = 0
Match: A0A835DM31 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8409018.1}))
HSP 1 Score: 370.548 bits (950), Expect = 3.418e-122
Identity = 205/344 (59.59%), Postives = 240/344 (69.77%), Query Frame = 0
Query: 1 MDLTKKRKLEDNGLLQ----PIFDLPTADVRKIISSFTTDQLLDIVQNAAVRHLDVLDAVRSIADQDLSQRKLFIRGLGWDTTNENLAAIFSAYGELDEAVVILDKATGKSKGFGFLTYKHIDGAIRALKEPSKKIDGRMTVTNLASAGPGGGPVMQQPVDVSNRKIYVANVPFEMPADRLLGFFLSYGEIEEGPLGFDKLTGKSKGFALFVYKSEDGAKAALVEPIKNIDGVQLNCKLAIEGKKGK------GGGGVQGEVHGI-----GVGVGLQQGGVVQGSGVVGQYGGAGGVTGYGGVVYPGGLQGPSPQVQHSQNPSF-----AGVGGPGYSSLPSQV 324
MD +KKRK E+NG + +L D RKII T +QLLDI+Q AAVRHLDVLDAVRSIAD+D +QRKLFIRGLGWDTT E L +FS+YG+L+EA+VILDK TGKSKGFGF+T+KHIDGA+ ALKEPSKKIDGRMTV+ LA+ G G +D S RKIYV NVPF+MPADRLL F SYGEIEEGPLGFDK TGKS+GFALFVYK+ + AKA+LV+P K IDG QL CKLAIEGKKGK G GG Q G+ G G+GL V S + QYG G++ YGG + GG QGP P + H NP + +G G SS+ SQV
Sbjct: 1 MDPSKKRKAEENGTVSIDAASSPNLTPEDARKIIEPLTQEQLLDILQAAAVRHLDVLDAVRSIADRDPAQRKLFIRGLGWDTTTEGLRTLFSSYGDLEEAIVILDKVTGKSKGFGFVTFKHIDGALLALKEPSKKIDGRMTVSQLAATGNTGATANAPAIDASMRKIYVGNVPFDMPADRLLAHFSSYGEIEEGPLGFDKQTGKSRGFALFVYKNAEAAKASLVDPTKTIDGHQLVCKLAIEGKKGKFGVPAVGAGGFQAPT-GVPGDIAGDGIGLPPPSSVP-SALTSQYGAPTGISSYGG--FSGGHQGP-PALGHHHNPHMNSSLPSSIGAQGLSSVGSQV 339
| Match Name | Stats | Description |
|---|---|---|
| A5ADJ5 | E-Value: 5.432e-135, PID: 62.73 | (Uncharacterized protein {ECO:0000313|EMBL:CAN6660... [more] |
| A0A438J4E7 | E-Value: 7.386e-135, PID: 62.73 | (UBP1-associated protein 2C {ECO:0000313|EMBL:RVX0... [more] |
| A0A1U8BKL7 | E-Value: 8.276e-133, PID: 51.69 | (UBP1-associated protein 2C {ECO:0000313|RefSeq:XP... [more] |
| A0A7J7H9W7 | E-Value: 2.067e-126, PID: 58.87 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5948... [more] |
| A0A7J6VTU8 | E-Value: 1.314e-125, PID: 49.80 | (Ubp1-associated protein 2c {ECO:0000313|EMBL:KAF5... [more] |
| A0A6P4AU64 | E-Value: 6.589e-124, PID: 61.31 | (UBP1-associated protein 2C {ECO:0000313|RefSeq:XP... [more] |
| A0A7J0FG03 | E-Value: 9.850e-124, PID: 60.00 | (RNA-binding (RRM/RBD/RNP motifs) family protein {... [more] |
| A0A2R6QCJ1 | E-Value: 2.197e-123, PID: 64.97 | (UBP1-associated protein like {ECO:0000313|EMBL:PS... [more] |
| A0A7J0G2X8 | E-Value: 7.173e-123, PID: 64.97 | (RNA-binding (RRM/RBD/RNP motifs) family protein {... [more] |
| A0A835DM31 | E-Value: 3.418e-122, PID: 59.59 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8409... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |