Resource Type:
Polypeptide
Name:
XM_017402687.1
Identifier:
XM_017402687.1-protein
Sequence:
MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQS
VTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDV
LNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSS
FGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYV
GVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVV
MRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSER
EVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITS
CKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRK
EERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAM
IAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPA
QQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGG
MLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAA
KVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNVADQLGGL
SLNENLVS
Sequence Length:
658
Sequence Checksum:
2a53dee21154ab6049d9723188736e08
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017402687.1, derives from mRNA, XM_017402687.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017402687.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017402687.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q9AT32 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1351.65 bits (3497), Expect = 0.000e+0
Identity = 658/658 (100.00%), Postives = 658/658 (100.00%), Query Frame = 0
Match: Q9AT32 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1351.65 bits (3497), Expect = 0.000e+0
Identity = 658/658 (100.00%), Postives = 658/658 (100.00%), Query Frame = 0
Query: 1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNVADQLGGLSLNENLVS 658
MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNVADQLGGLSLNENLVS
Sbjct: 1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNVADQLGGLSLNENLVS 658
BLAST of XM_017402687.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AW99 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1065.45 bits (2754), Expect = 0.000e+0
Identity = 537/661 (81.24%), Postives = 592/661 (89.56%), Query Frame = 0
Match: A0A5B7AW99 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1065.45 bits (2754), Expect = 0.000e+0
Identity = 537/661 (81.24%), Postives = 592/661 (89.56%), Query Frame = 0
Query: 1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNV---ADQLGGLSLNENLVS 658
MAQIQVQ Q PV+G NGV+A G+NQF TSLYVGDLD +VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RA+D+LNFTPLN K+IRV S RDP+ RKSG NIFIKNLDK+ID KAL++TFSSFG I+SCKIA+D SG SKGYGFVQ+++EE+AQ AIDKLNGML+NDKQVYVG FLRKQ+R++ M+ TKFNN+YVKNLS+ST+E+DL+ FGEYGTITSVVVMRD DGKSKCFGFVNFEN +DAAKAV+ALNGKK DDKEWYVGKAQKKSERE+ELKS FEQ+ +E VDK+QGVNLYVKNLDD+IDD+KLKELFSE+GTITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGK+IVSKPLYVALAQRKEERRARLQAQFSQMRPVAM PS+ PRMPMY PGAPG+GQQLFYGQ PPA+I PQAGFGYQQQLVPGMRPGG PMPNFF+P+VQQGQQGQRPGGRRG GP QQTQQPVP+M QQ++PRGR+YR+PPGRNV DV MPGV GGML VPY+MGGMLPR+A MGQPMP+ ALA+ALANAP DQQRTMLGENLYP VDQLEH+HAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAM+VLRNV+Q V ADQL LSLN+NLVS
Sbjct: 1 MAQIQVQ-----HQSPVTGPNGVAANP-----GANQFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAMDLLNFTPLNGKSIRVMNSHRDPSIRKSGTANIFIKNLDKAIDNKALNDTFSSFGNILSCKIASDPSGLSKGYGFVQFENEESAQNAIDKLNGMLINDKQVYVGHFLRKQERETAMNYTKFNNVYVKNLSESTTEEDLKNIFGEYGTITSVVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKIDDKEWYVGKAQKKSERELELKSHFEQSAREAVDKFQGVNLYVKNLDDSIDDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKLIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMAPSIAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFLPLVQQGQQGQRPGGRRGPGPFQQTQQPVPLMQQQMLPRGRVYRYPPGRNVPDVPMPGVAGGMLSVPYDMGGMLPRDATMGQPMPVPALATALANAPPDQQRTMLGENLYPQVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNVAQQQVSSPADQLASLSLNDNLVS 651
BLAST of XM_017402687.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QY14 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1063.52 bits (2749), Expect = 0.000e+0
Identity = 525/664 (79.07%), Postives = 579/664 (87.20%), Query Frame = 0
Match: A0A2R6QY14 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1063.52 bits (2749), Expect = 0.000e+0
Identity = 525/664 (79.07%), Postives = 579/664 (87.20%), Query Frame = 0
Query: 1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMG---QPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPN---VADQLGGLSLNENLVS 658
MAQIQVQ Q VSG NG A A +NQF TTSLYVGDLD +VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RAI+VLNFTPLN K IR+ S RDP+ R+SGA NIFIKNLDK+ID KALH+TFSSFG I+SCKIATD S QSKGYGFVQ+D+EE+AQTAIDKLNGML+NDKQVYVG FLRKQ+RD+ M+KTKFNN+YVKNLS+STSE+DL K FGEYG +TSVVVMRD DGKSKCFGFVNFEN + AA AV+ALNGKK DDKEWYVGKAQKKSERE+ELKSRFEQ+ KE VDK+QG+NLYVKNLDD+IDD+KL+ELFSE+GT+TSCKVM DPSGISRGSGFVAF+TPEEASRAL EMNGKM+ +KPLYVALAQRKEERRARLQ QFSQMRPVAM P++ PRMPMY PG PG+GQQLFYGQAPPA+I PQAGFGYQQQLVPGMRPGG PMPNFFMPMVQQGQQG RPGGRRGAGP QQ QQP P+M QQ++PRGR YR+ PGRN+ DV +PGV GGML VPY+MGGML R++ M PM + ALA++LANAP DQQRTMLGENLYPLVDQLEH+HAAKVTGMLLEMDQTEVLHLLESPDAL+AKV EAMDVLRNVSQ + ADQL LSLN+NLVS
Sbjct: 1 MAQIQVQHQSHV----VSGPNGGVAAAGGG---ANQFVTTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAIEVLNFTPLNGKVIRIMYSHRDPSIRRSGAANIFIKNLDKAIDNKALHDTFSSFGNILSCKIATDHSAQSKGYGFVQFDNEESAQTAIDKLNGMLINDKQVYVGQFLRKQERDTAMNKTKFNNVYVKNLSESTSEEDLNKIFGEYGILTSVVVMRDGDGKSKCFGFVNFENTDAAANAVEALNGKKIDDKEWYVGKAQKKSERELELKSRFEQSAKEVVDKFQGLNLYVKNLDDSIDDDKLRELFSEFGTVTSCKVMCDPSGISRGSGFVAFTTPEEASRALAEMNGKMVGNKPLYVALAQRKEERRARLQVQFSQMRPVAMAPALAPRMPMYHPGTPGLGQQLFYGQAPPAII-PQAGFGYQQQLVPGMRPGGAPMPNFFMPMVQQGQQGHRPGGRRGAGPVQQGQQPSPLMQQQMLPRGRGYRYSPGRNMQDVPIPGVAGGMLSVPYDMGGMLSRDSTMVPRLPPMAVPALATSLANAPPDQQRTMLGENLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPDALRAKVNEAMDVLRNVSQQHGNSPADQLASLSLNDNLVS 656
BLAST of XM_017402687.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T2D6 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1062.75 bits (2747), Expect = 0.000e+0
Identity = 540/659 (81.94%), Postives = 595/659 (90.29%), Query Frame = 0
Match: A0A6I9T2D6 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1062.75 bits (2747), Expect = 0.000e+0
Identity = 540/659 (81.94%), Postives = 595/659 (90.29%), Query Frame = 0
Query: 1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNV-ADQLGGLSLNENLVS 658
MAQIQVQ Q + +G NGV+A + A A + QF +TSLYVGDLD +VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RA++VLNFTPLNNK+IRV S RDP+ RKSG NIFIKNLDK+ID KALH+TFSSFG I+SCKIATD +GQSKGYGFVQ+DSE+AAQ+AIDKLNGML+NDKQVYVG FLRKQ+R++ + KTKFNN+YVKNL++ST++DDL+K FGEYG ITS VVMRDADGKSKCFGFVNFEN +DAAKAV+ALNGKK DDKEWYVGKAQKK ERE ELKSRFEQT +E VDK+QG+NLY+KNLDD+IDD+KLKELF+E+G ITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGKM+VSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSM PRMPMY PGAPG+GQQLFYGQAPPA+I PQAGFGYQQQLVPGMRPGG PMPNFF+P+VQQGQQGQRPGGRRG GP QQ QQPVP+M QQ++PRGRMYRFPPGRNV DV +PGV GGML VPY+MGGMLPR+AA+ QPMPITALASALANA +QQRTMLGENLYPLVDQLEH+HAAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMDVLRNV Q N ADQL LSLN+NLVS
Sbjct: 1 MAQIQVQ----HQNVAAAGPNGVAAPSGAAAAAAGQFMSTSLYVGDLDLNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALEVLNFTPLNNKSIRVMYSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSSFGNILSCKIATDPNGQSKGYGFVQFDSEDAAQSAIDKLNGMLINDKQVYVGHFLRKQERETALHKTKFNNVYVKNLAESTTDDDLKKIFGEYGAITSSVVMRDADGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKLEREQELKSRFEQTAREAVDKFQGLNLYIKNLDDSIDDDKLKELFTEFGNITSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMAPRMPMYPPGAPGIGQQLFYGQAPPAII-PQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGGGPVQQNQQPVPLMQQQMLPRGRMYRFPPGRNVPDVPIPGVAGGMLSVPYDMGGMLPRDAAIPQPMPITALASALANATPEQQRTMLGENLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVQQANSPADQLASLSLNDNLVS 654
BLAST of XM_017402687.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SXT6 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1061.98 bits (2745), Expect = 0.000e+0
Identity = 539/659 (81.79%), Postives = 595/659 (90.29%), Query Frame = 0
Match: A0A6I9SXT6 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1061.98 bits (2745), Expect = 0.000e+0
Identity = 539/659 (81.79%), Postives = 595/659 (90.29%), Query Frame = 0
Query: 1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNV-ADQLGGLSLNENLVS 658
MAQIQVQ Q + +G NGV+A A A + QF +TSLYVGDLD +VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RA++VLNFTPLNNK+IRV S RDP+ RKSG NIFIKNLDK+ID KALH+TFSSFG I+SCKIATD +GQSKGYGFVQ+DS+EAAQ+AIDKLNGML+NDKQVYVG FLRKQ+R++ + KTKFNN+YVKNL++ST++DDL+K FGEYG ITS VVMRDADGKSKCFGFVNFEN +DAAKAV+ALNGKK DDKEWYVGKAQKKSERE ELK+RFEQT +E +DK+QG+NLY+KNLDD+IDD+KLKELF+E+GTITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGKM+VSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSM PRMPMY PGAPG+GQQLFYGQAPPA+I PQ GFGYQQQLVPGMRPGG PMPNFF+P+VQQGQQGQRPGGRRG GP QQ QQPVP+M QQ++PRGRMYRFPPGRNV DV +PGV GGML VPY+MGGMLPR+AA+ QPMPITALASALANA +QQRTMLGENLYPLVDQLEH+HAAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMDVLRNV Q N ADQL LSLN+NLVS
Sbjct: 1 MAQIQVQ----HQNVAAAGPNGVAAPGGAAAAAAGQFMSTSLYVGDLDLNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALEVLNFTPLNNKSIRVMYSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSSFGNILSCKIATDPNGQSKGYGFVQFDSDEAAQSAIDKLNGMLINDKQVYVGHFLRKQERETALHKTKFNNVYVKNLAESTTDDDLKKIFGEYGAITSSVVMRDADGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKNRFEQTAREAIDKFQGLNLYIKNLDDSIDDDKLKELFTEFGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMAPRMPMYPPGAPGIGQQLFYGQAPPAII-PQPGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGGGPVQQNQQPVPLMQQQMLPRGRMYRFPPGRNVPDVPIPGVAGGMLSVPYDMGGMLPRDAAVPQPMPITALASALANATPEQQRTMLGENLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVQQANSPADQLASLSLNDNLVS 654
BLAST of XM_017402687.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5XRJ2 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1061.21 bits (2743), Expect = 0.000e+0
Identity = 521/662 (78.70%), Postives = 580/662 (87.61%), Query Frame = 0
Match: M5XRJ2 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1061.21 bits (2743), Expect = 0.000e+0
Identity = 521/662 (78.70%), Postives = 580/662 (87.61%), Query Frame = 0
Query: 1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGS-NQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNV---ADQLGGLSLNENLVS 658
MAQIQVQ Q PV+G NGV AANAGG+ QF +TSLYVGDLDQ+VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RA+DVLNFTPLNNK+IR+ S RDP+ RKSG GNIFIKNLDK+ID KALH+TFSSFG I+SCKIATD +GQSKGYGFVQ+DSEEAAQ+AIDKLNGML+NDK V+VG FLRKQ+RD +KTKFNN+YVKN+S+ST+EDDL+K FGE+G ITSVVVMRD DGKS+CFGFVNFE+P+ AAKAVD LNGKKFD+KEWYVGKAQKK ERE+ELK RFEQ++KE DK+QGVNLY+KNLDD+I DEKLKELFSEYGT+TSCKVMRDP G SRGSGFVAFST EEASRAL EMNGKM+VSKPLYVALAQRKEERRARLQAQFSQMRPVAM PS+ PRMPMY PGAPG+GQQ YGQAPP++I PQAGFGYQQQLVPG+RPGG PMPNFF+PMVQQG QGQRPGGRRGAGP QQ QQPVPMM Q ++PRGR+YR+PPGRN+ +V GV GML VPY+MGG+ R+AA GQ +P ALA+ALANA +QQRTMLGE LYPLVDQLEH+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAM+VLRNV+Q ADQL LSLN+NLVS
Sbjct: 1 MAQIQVQ-----HQPPVTGPNGV----AANAGGAPGQFVSTSLYVGDLDQNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKAIDHKALHDTFSSFGNILSCKIATDGTGQSKGYGFVQFDSEEAAQSAIDKLNGMLINDKPVFVGHFLRKQERDGAWNKTKFNNVYVKNISESTTEDDLKKIFGEHGQITSVVVMRDGDGKSRCFGFVNFEDPDAAAKAVDNLNGKKFDEKEWYVGKAQKKYERELELKERFEQSMKEASDKFQGVNLYIKNLDDSISDEKLKELFSEYGTVTSCKVMRDPDGNSRGSGFVAFSTTEEASRALAEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVAMAPSVAPRMPMYPPGAPGLGQQFLYGQAPPSIIPPQAGFGYQQQLVPGIRPGGAPMPNFFVPMVQQGPQGQRPGGRRGAGPVQQNQQPVPMMQQHMLPRGRVYRYPPGRNMQEVPFSGVPSGMLSVPYDMGGIPMRDAAGGQGVP--ALATALANASTEQQRTMLGEALYPLVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQANSSADQLSSLSLNDNLVS 651
BLAST of XM_017402687.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AVH5 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1055.82 bits (2729), Expect = 0.000e+0
Identity = 532/661 (80.48%), Postives = 587/661 (88.80%), Query Frame = 0
Match: A0A5B7AVH5 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1055.82 bits (2729), Expect = 0.000e+0
Identity = 532/661 (80.48%), Postives = 587/661 (88.80%), Query Frame = 0
Query: 1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNV---ADQLGGLSLNENLVS 658
MAQIQVQ Q +SG NGV+A A Q +TSLYVGDLD +VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RA+D+LNFTPLN K+IRV S RDP+ RKSG NIFIKNLDK+ID KAL++TFSSFG I+SCKIA+D SG SKGYGFVQ+++EE+AQ AIDKLNGML+NDKQVYVG FLRKQ+R++ M+ TKFNN+YVKNLS+ST+E+DL+ FGEYGTITSVVVMRD DGKSKCFGFVNFEN +DAAKAV+ALNGKK DDKEWYVGKAQKKSERE+ELKS FEQ+ +E VDK+QGVNLYVKNLDD+IDD+KLKELFSE+GTITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGK+IVSKPLYVALAQRKEERRARLQAQFSQMRPVAM PS+ PRMPMY PGAPG+GQQLFYGQ PPA+I PQAGFGYQQQLVPGMRPGG PMPNFF+P+VQQGQQGQRPGGRRG GP QQTQQPVP+M QQ++PRGR+YR+PPGRNV DV MPGV GGML VPY+MGGMLPR+A MGQPMP+ ALA+ALANAP DQQRTMLGENLYP VDQLEH+HAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAM+VLRNV+Q DQL LSLN+NLVS
Sbjct: 1 MAQIQVQ-----HQSSLSGPNGVAANA--------QLVSTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAMDLLNFTPLNGKSIRVMNSHRDPSIRKSGTANIFIKNLDKAIDNKALNDTFSSFGNILSCKIASDPSGLSKGYGFVQFENEESAQNAIDKLNGMLINDKQVYVGHFLRKQERETAMNYTKFNNVYVKNLSESTTEEDLKNIFGEYGTITSVVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKIDDKEWYVGKAQKKSERELELKSHFEQSAREAVDKFQGVNLYVKNLDDSIDDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKLIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMAPSIAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFLPLVQQGQQGQRPGGRRGPGPFQQTQQPVPLMQQQMLPRGRVYRYPPGRNVPDVPMPGVAGGMLSVPYDMGGMLPRDATMGQPMPVPALATALANAPPDQQRTMLGENLYPQVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNVAQQQANSPTDQLASLSLNDNLVS 648
BLAST of XM_017402687.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5T1N8 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1053.51 bits (2723), Expect = 0.000e+0
Identity = 517/662 (78.10%), Postives = 577/662 (87.16%), Query Frame = 0
Match: A0A6P5T1N8 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1053.51 bits (2723), Expect = 0.000e+0
Identity = 517/662 (78.10%), Postives = 577/662 (87.16%), Query Frame = 0
Query: 1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANAGGS-NQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNV---ADQLGGLSLNENLVS 658
MAQIQVQ Q PV+ NGV AANAGG+ QF +TSLYVGDLDQ+VTDSQLYDLFNQVGQVVSVRVCRDLST RSLGYGYVNYSN QDA RA+DVLNFTPLNNK+IR+ S RDP+ RKSG GNIFIKNLDK+ID KALH+TFSSFG I+SCKIATD +GQSKGYGFVQ+DSEEAAQ+AIDKLNGML+NDK V+VG FLRKQ+RD +KTKFNN+YVKN+S+ST+EDDL+K FGE+G ITSVVVMRD DGKS+CFGFVNFE+P+ AAKAVD LNGKKFD+KEWYVGKAQKK ERE+ELK RFEQ++KE DK+QGVNLY+KNLDD+I DEKLKELFS+YGT+TSCKVMRDP G SRGSGFVAFST EEASRAL EMNGKM+VSKPLYVALAQRKEERRARLQAQFSQMRPV M PS+ PRMPMY PGAPG+GQQ YGQAPP++I PQAGFGYQQQLVPG+RPGG PMPNFF+PMVQQG QGQRPGGRRGAGP QQ QQPVPMM Q ++PRGR+YR+PPGRN+ +V GV GML VPY+MGG+ R+AA GQ +P ALA+ALANA +QQRTMLGE LYP VDQLEH+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAM+VLRNV+Q ADQL LSLN+NLVS
Sbjct: 1 MAQIQVQ-----HQPPVTAPNGV----AANAGGAPGQFVSTSLYVGDLDQNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKAIDHKALHDTFSSFGNILSCKIATDGTGQSKGYGFVQFDSEEAAQSAIDKLNGMLINDKPVFVGHFLRKQERDGAWNKTKFNNVYVKNISESTTEDDLKKIFGEHGQITSVVVMRDGDGKSRCFGFVNFEDPDAAAKAVDNLNGKKFDEKEWYVGKAQKKYERELELKERFEQSMKEASDKFQGVNLYIKNLDDSISDEKLKELFSDYGTVTSCKVMRDPDGNSRGSGFVAFSTTEEASRALAEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVTMAPSVAPRMPMYPPGAPGLGQQFLYGQAPPSIIPPQAGFGYQQQLVPGIRPGGAPMPNFFVPMVQQGPQGQRPGGRRGAGPVQQNQQPVPMMQQHMLPRGRVYRYPPGRNMQEVPFSGVPSGMLSVPYDMGGIPMRDAAGGQGVP--ALATALANASTEQQRTMLGEALYPQVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQANSSADQLSSLSLNDNLVS 651
BLAST of XM_017402687.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A444YWA9 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1051.58 bits (2718), Expect = 0.000e+0
Identity = 522/666 (78.38%), Postives = 571/666 (85.74%), Query Frame = 0
Match: A0A444YWA9 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1051.58 bits (2718), Expect = 0.000e+0
Identity = 522/666 (78.38%), Postives = 571/666 (85.74%), Query Frame = 0
Query: 1 MAQIQVQPQQQQQQIPVSGSNGVSAGAA-----ANAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPP-GRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQP--NVADQLGGLSLNENLVS 658
MAQIQVQ Q + NGV+A + A G+NQF TTSLYVGDLD V + LYDLFNQVGQVVSVRVC DL+T RSLGYGYVNYSN QDA RAIDVLNFTPLNNK IR+ S RDP+ RKSG GNIFIKNLDK+ID KALH+TFSSFG I+SCKIATDASGQSKGYGFVQ+D+EE+AQ AIDKLNGML+NDKQVYVG FLRKQDRD+ + KT FNN+YVKNLS+S ++DDL+K FGEYGTITS VVMRDADG+SKCFGFVNFENPEDAAKAV++LNGKK DDKEWYVGKAQKKSERE EL+ RFEQ+VKE VDKYQGVNLY+KNLDDTI+DEKL+ELFSE+G+I SCKVMRDP+GISRGSGFVAFSTPEEASRAL EMNGKMI KPLYVALAQRKEERRARLQAQFSQMRPVAM PS+ PRMP+Y PGAPG+GQQ YGQ PPAMI PQAGFGYQQQLVPGMRPGG PMP+FF+PMV QQGQRPGGRRGAGP QQ QQ VPMM QQL+PRGR R+PP GRN+ DV +PGV GGML VPY++GG LP +GQP+ I ALA+ALANAP +QQRTMLGE LYPLVDQLEHD AAKVTGMLLEMDQ EVLHL+ESPDALKAKVAEAMDVLRNVSQ ADQL LSLNENLVS
Sbjct: 1 MAQIQVQ---HQSAVSAPPQNGVAAAPSPPLPVGAANGTNQFVTTSLYVGDLDPEVDERHLYDLFNQVGQVVSVRVCSDLTTRRSLGYGYVNYSNPQDAARAIDVLNFTPLNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDASGQSKGYGFVQFDTEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRDNALGKTTFNNVYVKNLSESVTDDDLKKIFGEYGTITSAVVMRDADGRSKCFGFVNFENPEDAAKAVESLNGKKIDDKEWYVGKAQKKSERENELRRRFEQSVKESVDKYQGVNLYLKNLDDTINDEKLRELFSEFGSINSCKVMRDPNGISRGSGFVAFSTPEEASRALTEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAMTPSVAPRMPLYPPGAPGLGQQFMYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPSFFVPMV---QQGQRPGGRRGAGPVQQPQQTVPMMQQQLLPRGRYMRYPPGGRNMQDVPLPGVAGGMLSVPYDIGG-LPIRDGVGQPVGIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVSQQANTPADQLASLSLNENLVS 659
BLAST of XM_017402687.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A445CXW8 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1047.34 bits (2707), Expect = 0.000e+0
Identity = 523/666 (78.53%), Postives = 571/666 (85.74%), Query Frame = 0
Match: A0A445CXW8 (Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004} (PABP {ECO:0000256|RuleBase:RU362004}))
HSP 1 Score: 1047.34 bits (2707), Expect = 0.000e+0
Identity = 523/666 (78.53%), Postives = 571/666 (85.74%), Query Frame = 0
Query: 1 MAQIQVQPQQQQQQIPVSGSNGVSAGAAANA-----GGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPP-GRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVS-QPNV-ADQLGGLSLNENLVS 658
MAQIQVQ Q + NGV+A + G+NQF TTSLYVGDLD V + LYDLFNQVGQVVSVRVC DL+T RSLGYGYVNYSN QDA RAIDVLNFTPLNNK IR+ S RDP+ RKSG NIFIKNLDK+ID KALH+TFSSFG I+SCKIATDASGQSKGYGFVQ+D+EE+AQ AIDKLNGML+NDKQVYVG FLRKQDRD+ + KT FNN+YVKNLS+S ++DDL+K FGEYGTITS VVMRDADGKSKCFGFVNFENPEDAAKAV++LNGKK DDKEWYVGKAQKKSERE EL+ RFEQTVKE VDKYQGVNLY+KNLDDTI+DEKL+ELFSE+G+ITSCKVMRDP+GISRGSGFV+FSTPEEASRAL EMNGKMI KPLYVALAQRKEERRARLQAQFSQMRPVAM PS+ PRMP+Y PGAPG+GQQ YGQ PPAMI PQAGFGYQQQLVPGMRPGG PMP+FF+PMV QQGQRPGGRRGAGP QQ QQ VPMM QQL+PRGR R+PP GRN+ DV +PGV GGML VPY++GG LP +GQP+ I ALA+ALANAP +QQRTMLGE LYPLVDQLEHD AAKVTGMLLEMDQ EVLHL+ESPDALKAKVAEAMDVLRNVS Q N ADQL LSLNENLVS
Sbjct: 1 MAQIQVQ---HQSAVSAPPQNGVAAAPSPPLPAGAANGTNQFVTTSLYVGDLDPEVDERHLYDLFNQVGQVVSVRVCSDLTTRRSLGYGYVNYSNPQDAARAIDVLNFTPLNNKPIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDASGQSKGYGFVQFDTEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRDNALGKTTFNNVYVKNLSESVTDDDLKKIFGEYGTITSAVVMRDADGKSKCFGFVNFENPEDAAKAVESLNGKKIDDKEWYVGKAQKKSERENELRRRFEQTVKESVDKYQGVNLYLKNLDDTINDEKLRELFSEFGSITSCKVMRDPNGISRGSGFVSFSTPEEASRALTEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAMTPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPSFFVPMV---QQGQRPGGRRGAGPVQQPQQTVPMMQQQLLPRGRYMRYPPGGRNMQDVPLPGVAGGMLSVPYDIGG-LPIRDGVGQPVGIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVSQQANAPADQLASLSLNENLVS 659
| Match Name | Stats | Description |
|---|---|---|
| Q9AT32 | E-Value: 0.000e+0, PID: 100.00 | Polyadenylate-binding protein {ECO:0000256|RuleBas... [more] |
| A0A5B7AW99 | E-Value: 0.000e+0, PID: 81.24 | Polyadenylate-binding protein {ECO:0000256|RuleBas... [more] |
| A0A2R6QY14 | E-Value: 0.000e+0, PID: 79.07 | Polyadenylate-binding protein {ECO:0000256|RuleBas... [more] |
| A0A6I9T2D6 | E-Value: 0.000e+0, PID: 81.94 | Polyadenylate-binding protein {ECO:0000256|RuleBas... [more] |
| A0A6I9SXT6 | E-Value: 0.000e+0, PID: 81.79 | Polyadenylate-binding protein {ECO:0000256|RuleBas... [more] |
| M5XRJ2 | E-Value: 0.000e+0, PID: 78.70 | Polyadenylate-binding protein {ECO:0000256|RuleBas... [more] |
| A0A5B7AVH5 | E-Value: 0.000e+0, PID: 80.48 | Polyadenylate-binding protein {ECO:0000256|RuleBas... [more] |
| A0A6P5T1N8 | E-Value: 0.000e+0, PID: 78.10 | Polyadenylate-binding protein {ECO:0000256|RuleBas... [more] |
| A0A444YWA9 | E-Value: 0.000e+0, PID: 78.38 | Polyadenylate-binding protein {ECO:0000256|RuleBas... [more] |
| A0A445CXW8 | E-Value: 0.000e+0, PID: 78.53 | Polyadenylate-binding protein {ECO:0000256|RuleBas... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |