MAATFVSNASTFLPSLSSSSPTSSSLHAHSQRQLVLCRAVSSNEPPFPAL
SLSKRNMSIGLTATLLMSLAGKGLCSDANAAILEADDDIELLEKVKKDRQ
KRLEKQSVISSSDKEKGYLQDLVYKLSKVGQAIEKNDLPTAASVLGEKSD
AEWVQKTNAALNKLSSSPEEIAEADAVKSSLSTLISSVGQKDIKASTLAF
VASANALEKWTLLTGLAGQLKGL
| Relationships |
|---|
| The polypeptide, XM_017403236.1, derives from mRNA, XM_017403236.1. |

Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A2R6QRW9 ((Thylakoid lumenal protein {ECO:0000313|EMBL:PSS13863.1}))
HSP 1 Score: 265.774 bits (678), Expect = 4.852e-88
Identity = 140/224 (62.50%), Postives = 168/224 (75.00%), Query Frame = 0
Query: 1 MAATFVSNASTFLPSLSSSSPTSSSLHAHSQR-QLVLCRAVSSNEPPFPALSLSKRNMSIGLTATLLMSLAGKGLCSDANAAILEADDDIELLEKVKKDRQKRLEKQSVISSSDKEKGYLQDLVYKLSKVGQAIEKNDLPTAASVLGEKSDAEWVQKTNAALNKLSSSPEEIAEADAVKSSLSTLISSVGQKDIKASTLAFVASANALEKWTLLTGLAGQLKGL 223
MA F+S A TFLP L SS P S H H+ R QL +AVS + PP+P + +KR++S+ LT+T L S+AG+ ANAAILEADDD ELLE+VKKDR+KRLE+Q VISSS+KE+ YLQDLVY+LSKVGQAIE NDL A+SVLG +D +WVQK N A K SSS EE E D +SL++LISSV QKDI+AS LAFV+SA+A EKWT LTGL GQLKGL
Sbjct: 1 MATLFLSTAKTFLPILLSSPPPSIHDHKHNTRPQLTQYKAVSDSPPPYPPI-FTKRSLSLSLTSTFLFSIAGQLGHFAANAAILEADDDEELLERVKKDRKKRLERQGVISSSNKERAYLQDLVYRLSKVGQAIENNDLSAASSVLGHSTDTDWVQKANLAFTKFSSSSEEKTEIDTFNTSLASLISSVVQKDIEASKLAFVSSASAFEKWTALTGLVGQLKGL 223
Match: D7TC38 ((Uncharacterized protein {ECO:0000313|EMBL:CBI28223.3}))
HSP 1 Score: 259.61 bits (662), Expect = 1.995e-85
Identity = 144/236 (61.02%), Postives = 174/236 (73.73%), Query Frame = 0
Query: 1 MAATFVSNASTFLPSLSSS------------SPTSSSLHAHS-QRQLVLCRAVSSNEPPFPALSLSKRNMSIGLTATLLMSLAGKGLCSDANAAILEADDDIELLEKVKKDRQKRLEKQSVISSSDKEKGYLQDLVYKLSKVGQAIEKNDLPTAASVLGEKSDAEWVQKTNAALNKLSSSPEEIAEADAVKSSLSTLISSVGQKDIKASTLAFVASANALEKWTLLTGLAGQLKGL 223
MA TF+S A+TFLPS SSS + T H H+ +RQL L +AVS P P ++ KR++SI L +L+ SLAGKG SDANAAILEADDD ELLEKVKKDR+KR+EKQ VISSS+KE GYLQ+LVYKLSKVGQAI+ NDL A+S LG +DA+WVQK N A KLSSSPEE +E DA SSL++LISSV + D+++S +AFV+SA A EKWT LTGL G+LKGL
Sbjct: 1 MATTFLSTANTFLPSSSSSSSSSSSSSSSSLAATHIYPHRHNVKRQLTLSKAVSEPRPSSPIIT--KRSLSITLLTSLVFSLAGKGYYSDANAAILEADDDEELLEKVKKDRKKRIEKQGVISSSNKETGYLQELVYKLSKVGQAIDNNDLSAASSFLGSNTDADWVQKANIAFTKLSSSPEEKSEVDAFNSSLASLISSVVRNDMESSKIAFVSSATAFEKWTTLTGLVGRLKGL 234
Match: A0A5J4ZZ73 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8523008.1}))
HSP 1 Score: 258.455 bits (659), Expect = 5.160e-85
Identity = 145/238 (60.92%), Postives = 173/238 (72.69%), Query Frame = 0
Query: 1 MAATFVSNAST-------------FLPSLSSSSPTSSSLHAHS-QRQLVLCRAVSSNEPPFPALSLSKRNMSIGLTATLLMSLAGKG-LCSDANAAILEADDDIELLEKVKKDRQKRLEKQSVISSSDKEKGYLQDLVYKLSKVGQAIEKNDLPTAASVLGEKSDAEWVQKTNAALNKLSSSPEEIAEADAVKSSLSTLISSVGQKDIKASTLAFVASANALEKWTLLTGLAGQLKGL 223
MAA F+S A+ FLP +S TSS H S +RQL LC+ V+ + PP+P +L+KR++SI LT T L S+AG G S+ANAAILEADDD ELLE+VK+DR+KR+EKQ VI+SS+KE YLQDLVYKLSKVGQAIE NDL A+SVLG SD +WVQK N A KLSSSPEE E DA SSL++LISSV Q DI+AS +AFV+SA+A EKWT LTGL GQLKGL
Sbjct: 1 MAAVFLSTANISLPSLPSSSSSSYFLPL---TSTTSSYFHKSSVRRQLKLCKVVN-DSPPYPP-NLTKRSLSICLTTTFLFSVAGDGDGYSNANAAILEADDDEELLERVKRDRKKRIEKQGVINSSNKETAYLQDLVYKLSKVGQAIENNDLSVASSVLGPSSDTDWVQKANVAFTKLSSSPEEKTEVDAFNSSLTSLISSVIQNDIEASKIAFVSSASAFEKWTALTGLVGQLKGL 233
Match: A0A5B7BWB0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA72356.1}))
HSP 1 Score: 254.988 bits (650), Expect = 1.075e-83
Identity = 144/232 (62.07%), Postives = 176/232 (75.86%), Query Frame = 0
Query: 1 MAATFVSNASTFLPSLSSSS-------PTSSSLH-AHSQRQLVLCRAVSSNEPPFPALSLSKRNMSIGLTATLLMSLA-GKGLCSDANAAILEADDDIELLEKVKKDRQKRLEKQSVISSSDKEKGYLQDLVYKLSKVGQAIEKNDLPTAASVLGEKSDAEWVQKTNAALNKLSSSPEEIAEADAVKSSLSTLISSVGQKDIKASTLAFVASANALEKWTLLTGLAGQLKGL 223
MAA F+S A TFLPSL SS TSS H ++ ++L LC+AV + PP+P + L+KR++SI LT T L SLA GKG C +ANAAILEADDD ELLEKVKKDR+KR+E+Q VISSS+KE YLQDLVYKLSKVGQAIE NDL A+SVLG+ +D +WV+K NAA KLSSSPEE + D SS+++LISSV Q D++AS +AFV+SA+A EKWT LTGL +LKGL
Sbjct: 1 MAAVFLSTAHTFLPSLPSSYSSSLTPPATSSYFHKSNGMKKLTLCKAVD-DSPPYPPI-LTKRSLSISLTTTFLFSLAAGKG-CYNANAAILEADDDEELLEKVKKDRKKRIERQGVISSSNKETAYLQDLVYKLSKVGQAIENNDLSAASSVLGQSTDTDWVKKANAAFTKLSSSPEEKTQVDTFNSSIASLISSVVQNDVEASKIAFVSSASAFEKWTTLTGLVVRLKGL 229
Match: A0A4S4D1I2 ((Uncharacterized protein {ECO:0000313|EMBL:THF95917.1}))
HSP 1 Score: 248.44 bits (633), Expect = 4.832e-81
Identity = 129/197 (65.48%), Postives = 158/197 (80.20%), Query Frame = 0
Query: 29 HSQR-QLVLCRAVS-SNEPPFPALSLSKRNMSIGLTATLLMSLAGKGLCSDANAAILEADDDIELLEKVKKDRQKRLEKQSVISSSDKEKGYLQDLVYKLSKVGQAIEKNDLPTAASVLGEKSDAEWVQKTNAALNKLSSSPEEIAEADAVKSSLSTLISSVGQKDIKASTLAFVASANALEKWTLLTGLAGQLKGL 223
H+ R +L LC+AV+ S +PP+P + L+KR +SI LT + L ++ +G CS ANAAILEADDDIELLEKVK+DR+KRLEKQ VISSS+KE YLQDLVYKLSKVGQAIE NDL A+SVLG +D +WVQK NAA KLSSSPEE ++ D SSL++LISSV +KD++AS +AFV+SA A E+WT LTGL GQLKGL
Sbjct: 41 HNARTELSLCKAVTDSQQPPYPPI-LTKRGLSISLTTSFLSLVSSQG-CSAANAAILEADDDIELLEKVKRDRKKRLEKQGVISSSNKETAYLQDLVYKLSKVGQAIENNDLSAASSVLGPSTDTDWVQKANAAFKKLSSSPEEKSQVDTFNSSLASLISSVIRKDVEASKIAFVSSATAFEEWTALTGLVGQLKGL 235
Match: A0A7J7G4M4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5934941.1}))
HSP 1 Score: 248.44 bits (633), Expect = 4.832e-81
Identity = 129/197 (65.48%), Postives = 158/197 (80.20%), Query Frame = 0
Query: 29 HSQR-QLVLCRAVS-SNEPPFPALSLSKRNMSIGLTATLLMSLAGKGLCSDANAAILEADDDIELLEKVKKDRQKRLEKQSVISSSDKEKGYLQDLVYKLSKVGQAIEKNDLPTAASVLGEKSDAEWVQKTNAALNKLSSSPEEIAEADAVKSSLSTLISSVGQKDIKASTLAFVASANALEKWTLLTGLAGQLKGL 223
H+ R +L LC+AV+ S +PP+P + L+KR +SI LT + L ++ +G CS ANAAILEADDDIELLEKVK+DR+KRLEKQ VISSS+KE YLQDLVYKLSKVGQAIE NDL A+SVLG +D +WVQK NAA KLSSSPEE ++ D SSL++LISSV +KD++AS +AFV+SA A E+WT LTGL GQLKGL
Sbjct: 41 HNARTELSLCKAVTDSQQPPYPPI-LTKRGLSISLTTSFLSLVSSQG-CSAANAAILEADDDIELLEKVKRDRKKRLEKQGVISSSNKETAYLQDLVYKLSKVGQAIENNDLSAASSVLGPSTDTDWVQKANAAFKKLSSSPEEKSQVDTFNSSLASLISSVIRKDVEASKIAFVSSATAFEEWTALTGLVGQLKGL 235
Match: A0A4P1R2F6 ((Uncharacterized protein {ECO:0000313|EMBL:OIV99906.1}))
HSP 1 Score: 247.284 bits (630), Expect = 8.896e-81
Identity = 128/204 (62.75%), Postives = 159/204 (77.94%), Query Frame = 0
Query: 20 SPTSSSLHAHSQRQLVLCRAVSSNEPPFPALSLSKRNMSIGLTATLLMSLAGKGLCSDANAAILEADDDIELLEKVKKDRQKRLEKQSVISSSDKEKGYLQDLVYKLSKVGQAIEKNDLPTAASVLGEKSDAEWVQKTNAALNKLSSSPEEIAEADAVKSSLSTLISSVGQKDIKASTLAFVASANALEKWTLLTGLAGQLKGL 223
+PT S+ +RQL +C+ V N+P LS++KR + I + +++LAGKG C DANAAILEADDD+ELLEKVK DR+KRLE+Q VISSS KE GYLQD+VYKLSKVG+AIE NDLPTA+SVLG+ ++ +WVQKT AL KLSSSPEE E DA SSL+TLISSV + D+++S +AFV+SA+A EKWT LTGL QLKGL
Sbjct: 31 TPTYFSV----KRQLPICKTV--NQPARNPLSVTKRGLYISFLTSFVLTLAGKG-CFDANAAILEADDDVELLEKVKLDRKKRLERQGVISSSTKETGYLQDVVYKLSKVGEAIENNDLPTASSVLGKGTNTDWVQKTTIALTKLSSSPEEKTEVDAFNSSLATLISSVAKNDVESSKVAFVSSASAFEKWTSLTGLVVQLKGL 227
Match: A0A0A0LI29 ((Uncharacterized protein {ECO:0000313|EMBL:KGN60689.1}))
HSP 1 Score: 247.669 bits (631), Expect = 9.409e-81
Identity = 131/212 (61.79%), Postives = 162/212 (76.42%), Query Frame = 0
Query: 12 FLPSLSSSSPTSSSLHAHSQRQLVLCRAVSSNEPPFPALSLSKRNMSIGLTATLLMSLAGKGLCSDANAAILEADDDIELLEKVKKDRQKRLEKQSVISSSDKEKGYLQDLVYKLSKVGQAIEKNDLPTAASVLGEKSDAEWVQKTNAALNKLSSSPEEIAEADAVKSSLSTLISSVGQKDIKASTLAFVASANALEKWTLLTGLAGQLKGL 223
F P L S H +++R LV+C+ SS++PP +L+KR +SI ++ + L G+G SDANAAILEADDD ELLEKVKKDR+KRLEKQ VISS++KEKGYLQ+LVYKLSKVGQAI+ ND TA+SVLG SDA+WV+K N+A NKLSSSPEE +E DA SSL++LISSV + D+++S AFVASA+A EKWT L GL GQLKGL
Sbjct: 31 FTPPLIRSRFGCLYCHNNTKR-LVICK--SSSDPPSKIPALTKRTLSICFISSFIFPLVGQGF-SDANAAILEADDDEELLEKVKKDRKKRLEKQGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVKKANSAFNKLSSSPEEKSEVDAFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALAGLVGQLKGL 238
Match: A0A1S3C541 ((thylakoid lumenal 16.5 kDa protein, chloroplastic {ECO:0000313|RefSeq:XP_008457444.1}))
HSP 1 Score: 246.128 bits (627), Expect = 3.127e-80
Identity = 139/237 (58.65%), Postives = 173/237 (73.00%), Query Frame = 0
Query: 1 MAATFVSNASTFLPSLSSSSPTS-------------SSLHAHSQ-RQLVLCRAVSSNEPPFPALSLSKRNMSIGLTATLLMSLAGKGLCSDANAAILEADDDIELLEKVKKDRQKRLEKQSVISSSDKEKGYLQDLVYKLSKVGQAIEKNDLPTAASVLGEKSDAEWVQKTNAALNKLSSSPEEIAEADAVKSSLSTLISSVGQKDIKASTLAFVASANALEKWTLLTGLAGQLKGL 223
MA +F+S A+TF S SSS +S L+ H+ ++LV+C+ SS++PP +L+KR +SI ++ + L G+G SDANAAILEADDD ELLEKVKKDR+KRLEKQ VISS++KEKGYLQ+LVYKLSKVGQAI+ ND TA+SVLG SDA+WVQ N A NKLSSSPEE +E DA SSL++LISSV + D+++S AFVASA+A EKWT L GL GQLKGL
Sbjct: 1 MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICK--SSSDPPSKIPALTKRTLSICFISSFIFPLVGQGF-SDANAAILEADDDEELLEKVKKDRKKRLEKQGVISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPEEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234
Match: A0A5A7V8J2 ((Thylakoid lumenal 16.5 kDa protein {ECO:0000313|EMBL:KAA0063500.1}))
HSP 1 Score: 246.128 bits (627), Expect = 3.127e-80
Identity = 139/237 (58.65%), Postives = 173/237 (73.00%), Query Frame = 0
Query: 1 MAATFVSNASTFLPSLSSSSPTS-------------SSLHAHSQ-RQLVLCRAVSSNEPPFPALSLSKRNMSIGLTATLLMSLAGKGLCSDANAAILEADDDIELLEKVKKDRQKRLEKQSVISSSDKEKGYLQDLVYKLSKVGQAIEKNDLPTAASVLGEKSDAEWVQKTNAALNKLSSSPEEIAEADAVKSSLSTLISSVGQKDIKASTLAFVASANALEKWTLLTGLAGQLKGL 223
MA +F+S A+TF S SSS +S L+ H+ ++LV+C+ SS++PP +L+KR +SI ++ + L G+G SDANAAILEADDD ELLEKVKKDR+KRLEKQ VISS++KEKGYLQ+LVYKLSKVGQAI+ ND TA+SVLG SDA+WVQ N A NKLSSSPEE +E DA SSL++LISSV + D+++S AFVASA+A EKWT L GL GQLKGL
Sbjct: 1 MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICK--SSSDPPSKIPALTKRTLSICFISSFIFPLVGQGF-SDANAAILEADDDEELLEKVKKDRKKRLEKQGVISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPEEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6QRW9 | E-Value: 4.852e-88, PID: 62.50 | (Thylakoid lumenal protein {ECO:0000313|EMBL:PSS13... [more] |
| D7TC38 | E-Value: 1.995e-85, PID: 61.02 | (Uncharacterized protein {ECO:0000313|EMBL:CBI2822... [more] |
| A0A5J4ZZ73 | E-Value: 5.160e-85, PID: 60.92 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8523... [more] |
| A0A5B7BWB0 | E-Value: 1.075e-83, PID: 62.07 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7235... [more] |
| A0A4S4D1I2 | E-Value: 4.832e-81, PID: 65.48 | (Uncharacterized protein {ECO:0000313|EMBL:THF9591... [more] |
| A0A7J7G4M4 | E-Value: 4.832e-81, PID: 65.48 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5934... [more] |
| A0A4P1R2F6 | E-Value: 8.896e-81, PID: 62.75 | (Uncharacterized protein {ECO:0000313|EMBL:OIV9990... [more] |
| A0A0A0LI29 | E-Value: 9.409e-81, PID: 61.79 | (Uncharacterized protein {ECO:0000313|EMBL:KGN6068... [more] |
| A0A1S3C541 | E-Value: 3.127e-80, PID: 58.65 | (thylakoid lumenal 16.5 kDa protein, chloroplastic... [more] |
| A0A5A7V8J2 | E-Value: 3.127e-80, PID: 58.65 | (Thylakoid lumenal 16.5 kDa protein {ECO:0000313|E... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |
