XM_017403373.1 | CarrotOmics

Resource Type:

Polypeptide

Name:

XM_017403373.1

Identifier:

XM_017403373.1-protein

Sequence:

MRISRLFLFRFSLWLLLFFTPKGHWAVKAFTGTYGINYGRIADNIPTPDK
VVTLLRASKIKNVRIYDADHSVLNAFSGTGLELVVGLPNGFVKEMSTNAD
HALTWVKENVQAFPKTNIVGIAIGNEILGGSDVDLWAALLGAAKNIYNAT
KELQLKGVQITTAHSQAVFADSYPPSSCIFKEGVDQYMKPLLEFFSQIGS
PFCLNAYPFLAYMGSPDTIDINYALFQSTDGIDDKKSKLHYDNMLDAQVD
AAYYALEDAGFKKMEVIITETGWASRGDDNEAAATVDNARTYNFNLRKRL
AKKKGTPLRPKMVLKVYVFAVFNENSKPGPTSERNFGLFKADGSISYDIG
YSGLKSSSAPSTVLSLKEVSTEGRSWIYTFAACASALLLFLR

Sequence Length:

392

Sequence Checksum:

ed81d95865850bedcc7fb06c419f8fd9

View location in JBrowse:

DCARv2_Chr6:27349881..27355421+

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, XM_017403373.1, derives from mRNA, XM_017403373.1.

Blast Results:

The following BLAST results are available for this feature:

BLAST of XM_017403373.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of XM_017403373.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10

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BLAST of XM_017403373.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2L126 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}))

HSP 1 Score: 600.897 bits (1548), Expect = 0.000e+0
Identity = 285/361 (78.95%), Postives = 321/361 (88.92%), Query Frame = 0

Query:    8 LFRFSLWLLLFFTPKGHWAVKAFTGTYGINYGRIADNIPTPDKVVTLLRASKIKNVRIYDADHSVLNAFSGTGLELVVGLPNGFVKEMSTNADHALTWVKENVQAF-PKTNIVGIAIGNEILGGSDVDLWAALLGAAKNIYNATKELQLKGVQITTAHSQAVFADSYPPSSCIFKEGVDQYMKPLLEFFSQIGSPFCLNAYPFLAYMGSPDTIDINYALFQSTDGIDDKKSKLHYDNMLDAQVDAAYYALEDAGFKKMEVIITETGWASRGDDNEAAATVDNARTYNFNLRKRLAKKKGTPLRPKMVLKVYVFAVFNENSKPGPTSERNFGLFKADGSISYDIGYSGLKSSSAPSTVLSLK 367
            LFRF    L+FF+      V+ FTGTYGINYGRIADNIP+PD+VVTLLRA+KIKNVRIYDADHSVL AFSGTGLELVVGLPN +VK+MS NADHA+ WVKENVQ+F P TNI GIA+GNEILGG D ++WAALLGA KNIYNAT+ L L  +QITTAHSQAVFA+SYPPSSCIFK+ + QYMKPLLEFFSQ+GSPFCLNAYPFLAYMG P+ IDINYALFQST GIDD K+ LHYDNMLDAQ+DAAY ALEDAGFKKMEVI+TETGWASRGDD+EAAATV+NA TYN+NLRKRLAK+KGTPLRPKMV+K Y+FA+FNE+ KPGPTSERNFGLFK DGSI+Y+IG+ GLKSSSA + +LSLK
Sbjct:    7 LFRFLTMFLIFFSSIVSLTVQGFTGTYGINYGRIADNIPSPDQVVTLLRAAKIKNVRIYDADHSVLKAFSGTGLELVVGLPNDYVKDMSANADHAVNWVKENVQSFLPGTNIRGIAVGNEILGGGDTEMWAALLGAVKNIYNATQTLHLTDIQITTAHSQAVFANSYPPSSCIFKDNIVQYMKPLLEFFSQMGSPFCLNAYPFLAYMGDPENIDINYALFQSTQGIDDTKTDLHYDNMLDAQIDAAYAALEDAGFKKMEVIVTETGWASRGDDSEAAATVNNAMTYNYNLRKRLAKRKGTPLRPKMVVKAYIFAIFNEDLKPGPTSERNFGLFKPDGSIAYNIGFHGLKSSSADTLLLSLK 367

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BLAST of XM_017403373.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540MEP5 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}))

HSP 1 Score: 589.726 bits (1519), Expect = 0.000e+0
Identity = 292/390 (74.87%), Postives = 328/390 (84.10%), Query Frame = 0

Query:    7 FLFRFSLWLLLFFTPKGHWAVKAFTGTYGINYGRIADNIPTPDKVVTLLRASKIKNVRIYDADHSVLNAFSGTGLELVVGLPNGFVKEMSTNADHALTWVKENVQAF-PKTNIVGIAIGNEILGGSDVDLWAALLGAAKNIYNATKELQLKGV-QITTAHSQAVFADSYPPSSCIFKEGV-DQYMKPLLEFFSQIGSPFCLNAYPFLAYMGSPDTIDINYALFQSTDGIDDKKSKLHYDNMLDAQVDAAYYALEDAGFKKMEVIITETGWASRGDDNEAAATVDNARTYNFNLRKRLAKKKGTPLRPKMVLKVYVFAVFNENSKPGPTSERNFGLFKADGSISYDIGYSGLKSSSAPSTVLSLKEVSTEG--RSWIYTFAACASALLLFL 391
            F  +F L  L+FF P    AV+AFTG YGINYGRIADNIP+PDKV TLLRA+KIKNVRIYDADHSVL AFSGTGLELVVGLPNG++K+MS N DHA+ WVKENVQAF P T+I GIA+GNE+LGG D +LWAALLGA KNIYNA K+L L  V QITTAHSQAVFA+SYPPSSCIFK+ +  QYMKPLLEFF +IGSPFCLNAYPFLAYM  P+ IDINYALFQ T GI D K+ LHYDNMLDAQ+DAAY ALEDAGFKKMEVIITETGWASRGDDNEAAATV+NARTYN+NLRKRLAKKKGTP+RPK V+K Y+FA+FNE+ KPGPTSERNFGLFK DG+I+YDIGY GL SSSA S  LS K++  +G  R      +  ++ALLLFL
Sbjct:    6 FFAQFVLVFLVFFPPIASVAVQAFTGAYGINYGRIADNIPSPDKVATLLRAAKIKNVRIYDADHSVLKAFSGTGLELVVGLPNGYLKDMSANEDHAMDWVKENVQAFLPNTHICGIAVGNEVLGGVDYELWAALLGAVKNIYNAIKKLGLTDVVQITTAHSQAVFANSYPPSSCIFKDNIKQQYMKPLLEFFLEIGSPFCLNAYPFLAYMSDPENIDINYALFQKTQGIYDPKTDLHYDNMLDAQIDAAYAALEDAGFKKMEVIITETGWASRGDDNEAAATVNNARTYNYNLRKRLAKKKGTPMRPKFVVKAYIFAIFNEDLKPGPTSERNFGLFKPDGTIAYDIGYRGLVSSSADSLRLSSKDIGAQGWPRLQFLILSISSAALLLFL 395

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BLAST of XM_017403373.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YSY3 ((Putative glucan endo-1,3-beta-glucosidase 11 {ECO:0000313|EMBL:MPA34765.1}) (3.2.1.39 {ECO:0000313|EMBL:MPA34765.1}))

HSP 1 Score: 588.571 bits (1516), Expect = 0.000e+0
Identity = 299/396 (75.51%), Postives = 335/396 (84.60%), Query Frame = 0

Query:    1 MRISRLFLFRFSLWLLLFFTPKGHWAVKAFTGTYGINYGRIADNIPTPDKVVTLLRASKIKNVRIYDADHSVLNAFSGTGLELVVGLPNGFVKEMSTNADHALTWVKENVQAF-PKTNIVGIAIGNEILGGSDVDLWAALLGAAKNIYNATKELQLKG-VQITTAHSQAVFADSYPPSSCIFKEGVDQYMKPLLEFFSQIGSPFCLNAYPFLAYMGSPDTIDINYALFQSTDGIDDKKSKLHYDNMLDAQVDAAYYALEDAGFKKMEVIITETGWASRGDDNEAAATVDNARTYNFNLRKRLAKKKGTPLRPKMVLKVYVFAVFNENSKPGPTSERNFGLFKADGSISYDIGYSGLKSSSAPSTVLSLKEVSTEG--RSWIYTFAACASALLLFLR 392
            M+ S   + RF L   +FF P     V+AFTGTYGINYGRIADNIP+PDKV TLLRA+KIKNVRIYDADHSVLNAFSGTGLEL +GLPNG++K MS NADHAL+WVKENV+AF P+T I GIAIGNE+LGG D  LW  LLGAAKNIYNATKELQL   +QI+TAHSQAVF  SYPPSSCIF+E + QYMKPLLEFFSQIGSPFCLNAYPFLAYMG+ D IDINYALFQS  GI D+K+ LHYDNMLDAQ+DAAY ALE AGFK+MEVI+TETGWAS GD NEAAATV+NARTYN+NLRKRLAK+KGTPLRPK VLKVYVFA+FNE  KPGPTSERNFGLFKADG+ISYDIG++GLKSSS  S++LSLK++  +G   S+     AC S LLLFLR
Sbjct:   26 MKFSSRSVVRFLLVFSIFFIPNELLIVQAFTGTYGINYGRIADNIPSPDKVATLLRAAKIKNVRIYDADHSVLNAFSGTGLELEIGLPNGYLKNMSANADHALSWVKENVEAFLPETRIRGIAIGNEVLGGGDQGLWGDLLGAAKNIYNATKELQLTDLIQISTAHSQAVFDHSYPPSSCIFRENIVQYMKPLLEFFSQIGSPFCLNAYPFLAYMGNTDEIDINYALFQSNQGIYDQKTDLHYDNMLDAQIDAAYAALEVAGFKEMEVIVTETGWASNGDQNEAAATVNNARTYNYNLRKRLAKRKGTPLRPKNVLKVYVFALFNEYLKPGPTSERNFGLFKADGNISYDIGFAGLKSSSEASSLLSLKDIRAQGWCGSYSVVLTACTSVLLLFLR 421

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BLAST of XM_017403373.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9VPQ7 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}))

HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0
Identity = 286/370 (77.30%), Postives = 319/370 (86.22%), Query Frame = 0

Query:   27 VKAFTGTYGINYGRIADNIPTPDKVVTLLRASKIKNVRIYDADHSVLNAFSGTGLELVVGLPNGFVKEMSTNADHALTWVKENVQAF-PKTNIVGIAIGNEILGGSDVDLWAALLGAAKNIYNATKELQLKGV-QITTAHSQAVFADSYPPSSCIFKEGVDQYMKPLLEFFSQIGSPFCLNAYPFLAYMGSPDTIDINYALFQSTDGIDDKKSKLHYDNMLDAQVDAAYYALEDAGFKKMEVIITETGWASRGDDNEAAATVDNARTYNFNLRKRLAKKKGTPLRPKMVLKVYVFAVFNENSKPGPTSERNFGLFKADGSISYDIGYSGLKSSSAPSTVLSLKEVSTEG--RSWIYTFAACASALLLFLR 392
            V+AFTG YGINYGRIADNIP+PD+VVTLLRA+KI+NVRIYD DHSVL AFSGTGLELVVGLPNG+VKEMS NA +A+TWVKENVQAF PKT+I GIAIGNE+LGGSD +LW ALLGA KNI+NA K+L L  V QITTAHSQAVFA+SYPPSSC+F++ V Q+MKPLLEFFSQIGSPFCLNAYPFLAYMG P+ IDINYALFQ T GI D K+ LHYDNMLDAQ+DAAY ALEDAG+KKMEVI+TETGWAS GDDNE AAT DNARTYN+NLRKRLAKKKGTP RPK+V+K Y+FA+FNE+ KPGPTSERN+GLFKADGSISYDIG+ GLKSSSA S   S+K V  +G  RS        A A LLFLR
Sbjct:   48 VQAFTGAYGINYGRIADNIPSPDEVVTLLRAAKIRNVRIYDFDHSVLKAFSGTGLELVVGLPNGYVKEMSANASNAITWVKENVQAFLPKTSIRGIAIGNEVLGGSDYELWGALLGAVKNIHNALKKLHLADVVQITTAHSQAVFANSYPPSSCVFRDNVAQFMKPLLEFFSQIGSPFCLNAYPFLAYMGDPENIDINYALFQKTQGIYDPKTDLHYDNMLDAQIDAAYAALEDAGYKKMEVIVTETGWASHGDDNEVAATADNARTYNYNLRKRLAKKKGTPFRPKIVVKAYIFAIFNEDMKPGPTSERNYGLFKADGSISYDIGFHGLKSSSADSLHFSMKAVQGQGSSRSCFLILTISAVASLLFLR 417

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BLAST of XM_017403373.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YST8 ((Putative glucan endo-1,3-beta-glucosidase 14-like {ECO:0000313|EMBL:MPA34767.1}) (3.2.1.39 {ECO:0000313|EMBL:MPA34767.1}) (Fragment))

HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0
Identity = 301/396 (76.01%), Postives = 336/396 (84.85%), Query Frame = 0

Query:    1 MRISRLFLFRFSLWLLLFFTPKGHWAVKAFTGTYGINYGRIADNIPTPDKVVTLLRASKIKNVRIYDADHSVLNAFSGTGLELVVGLPNGFVKEMSTNADHALTWVKENVQAF-PKTNIVGIAIGNEILGGSDVDLWAALLGAAKNIYNATKELQLKG-VQITTAHSQAVFADSYPPSSCIFKEGVDQYMKPLLEFFSQIGSPFCLNAYPFLAYMGSPDTIDINYALFQSTDGIDDKKSKLHYDNMLDAQVDAAYYALEDAGFKKMEVIITETGWASRGDDNEAAATVDNARTYNFNLRKRLAKKKGTPLRPKMVLKVYVFAVFNENSKPGPTSERNFGLFKADGSISYDIGYSGLKSSSAPSTVLSLKEVSTEGRSWIYTFA---ACASALLLFL 391
            M+ S   + RF L   +FF P     V+AFTGTYGINYGRIADNIP+PDKV TLLRA+KIKNVRIYDADHSVLNAFSGTGLEL +GLPNG++K MS NADHAL+WVKENV+AF P+T I GIAIGNE+LGG D  LW  LLGAAKNIYNATKELQL   +QI+TAHSQAVF  SYPPSSCIF+E + QYMKPLLEFFSQIGSPFCLNAYPFLAYMG+ D IDINYALFQS  GI D+K+ LHYDNMLDAQ+DAAY ALE AGFK+MEVI+TETGWAS GD NEAAATV+NARTYN+NLRKRLAK+KGTP+RPKMVLK YVFAVFNE+ KPGP SERNFGLFK DGSISYDIG++GLKSSSA S++LSLK++ T G S  Y+     ACAS LLLFL
Sbjct:   82 MKFSSRSVVRFLLVFSIFFIPNELLIVQAFTGTYGINYGRIADNIPSPDKVATLLRAAKIKNVRIYDADHSVLNAFSGTGLELEIGLPNGYLKNMSANADHALSWVKENVEAFLPETRIRGIAIGNEVLGGGDQGLWGDLLGAAKNIYNATKELQLTDLIQISTAHSQAVFDHSYPPSSCIFRENIVQYMKPLLEFFSQIGSPFCLNAYPFLAYMGNTDEIDINYALFQSNQGIYDQKTDLHYDNMLDAQIDAAYAALEVAGFKEMEVIVTETGWASNGDQNEAAATVNNARTYNYNLRKRLAKRKGTPMRPKMVLKAYVFAVFNEDLKPGPASERNFGLFKPDGSISYDIGFAGLKSSSAASSLLSLKDIQTRGWSGSYSLVLLTACASILLLFL 477

[Close]

BLAST of XM_017403373.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A498HXW8 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}))

HSP 1 Score: 587.415 bits (1513), Expect = 0.000e+0
Identity = 286/370 (77.30%), Postives = 319/370 (86.22%), Query Frame = 0

Query:    7 FLFRFSLWLLLFFTPKGHWAVKAFTGTYGINYGRIADNIPTPDKVVTLLRASKIKNVRIYDADHSVLNAFSGTGLELVVGLPNGFVKEMSTNADHALTWVKENVQAF-PKTNIVGIAIGNEILGGSDVDLWAALLGAAKNIYNATKELQLKGV-QITTAHSQAVFADSYPPSSCIFKEGV-DQYMKPLLEFFSQIGSPFCLNAYPFLAYMGSPDTIDINYALFQSTDGIDDKKSKLHYDNMLDAQVDAAYYALEDAGFKKMEVIITETGWASRGDDNEAAATVDNARTYNFNLRKRLAKKKGTPLRPKMVLKVYVFAVFNENSKPGPTSERNFGLFKADGSISYDIGYSGLKSSSAPSTVLSLKEVSTEG 373
            F  +F L  L+FF P    AV+AFTG YGINYGRIADNIP+PDKV TLLRA+KIKNVRIYDADHSVL AFSGTGLELVVGLPNG++K+MS N DHA+ WVKENVQAF P T+I GIA+GNE+LGG D +LWAALLGA KNIYNA K+L L  V QITTAHSQAVFA+SYPPSSCIFK+ +  QYMKPLLEFFS+IGSPFCLNAYPFLAYM  P+ IDINYALFQ T GI D K+ LHYDNMLDAQ+DAAY ALEDAGFKKMEVIITETGWASRGDDNEAAATV+NARTYN+NLRKRLAKKKGTP+RPK V+K Y+FA+FNE+ KPGPTSERNFGLFK DG+I+YDIGY GL SSSA S  LS K++  +G
Sbjct:    6 FFAQFVLVFLVFFPPIASVAVQAFTGAYGINYGRIADNIPSPDKVATLLRAAKIKNVRIYDADHSVLKAFSGTGLELVVGLPNGYLKDMSANEDHAMDWVKENVQAFLPDTHICGIAVGNEVLGGVDYELWAALLGAVKNIYNAIKKLGLTDVVQITTAHSQAVFANSYPPSSCIFKDNIKQQYMKPLLEFFSEIGSPFCLNAYPFLAYMSDPENIDINYALFQKTQGIYDPKTDLHYDNMLDAQIDAAYAALEDAGFKKMEVIITETGWASRGDDNEAAATVNNARTYNYNLRKRLAKKKGTPMRPKFVVKAYIFAIFNEDLKPGPTSERNFGLFKPDGTIAYDIGYRGLVSSSADSLRLSSKDIGAQG 375

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BLAST of XM_017403373.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836DH50 ((Glucan endo-1,3-beta-glucosidase {ECO:0000313|EMBL:KAG5226100.1}))

HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 293/384 (76.30%), Postives = 328/384 (85.42%), Query Frame = 0

Query:   13 LWLLLFFTPKGHWAVKAFTGTYGINYGRIADNIPTPDKVVTLLRASKIKNVRIYDADHSVLNAFSGTGLELVVGLPNGFVKEMSTNADHALTWVKENVQAF-PKTNIVGIAIGNEILGGSDVDLWAALLGAAKNIYNATKELQLKGV-QITTAHSQAVFADSYPPSSCIFKEGVDQYMKPLLEFFSQIGSPFCLNAYPFLAYMGSPDTIDINYALFQSTDGIDDKKSKLHYDNMLDAQVDAAYYALEDAGFKKMEVIITETGWASRGDDNEAAATVDNARTYNFNLRKRLAKKKGTPLRPKMVLKVYVFAVFNENSKPGPTSERNFGLFKADGSISYDIGYSGLKSSSAPSTVLSLKEVSTEG--RSWIYTFAACASALLLFLR 392
            ++L++F         KAFTGTYGINYGRIADNIP+PD+V TLLRA+KIKNVRIYDADHSVL AFSGTGL+LVVGLPNG VKEMS NA HA+TWVKENVQAF PKT+I GIA+GNEILGGSD +LW ALLGA KNIYNA  +L L GV QITT+HSQAVFA+SYPPSSCIFKE V Q+MKPLLEFFSQIGSPFCLNAYPFLAYM  P+ IDINYALFQ T GI D K+ LHYDNMLDAQ+DA Y ALEDAGFKKMEVI+TETGWAS GD NEAAATV+NARTYN+NLRKRLAKKKGTPLRPKMVLK Y+FA+FNEN KPGPTSERNFGLFK DGSISYDIG+ GL S+   S++LSLK V ++G  +S+I      A+AL+LFL+
Sbjct:   11 MFLVIFAQKIELLTAKAFTGTYGINYGRIADNIPSPDEVATLLRAAKIKNVRIYDADHSVLEAFSGTGLQLVVGLPNGLVKEMSANASHAMTWVKENVQAFLPKTSICGIAVGNEILGGSDYELWEALLGAVKNIYNALDKLGLAGVVQITTSHSQAVFANSYPPSSCIFKENVAQFMKPLLEFFSQIGSPFCLNAYPFLAYMSDPENIDINYALFQKTKGIYDMKTDLHYDNMLDAQIDATYAALEDAGFKKMEVIVTETGWASLGDSNEAAATVNNARTYNYNLRKRLAKKKGTPLRPKMVLKAYIFAIFNENLKPGPTSERNFGLFKPDGSISYDIGFHGLSSAE--SSLLSLKAVQSQGLSKSYILILTISAAALVLFLK 392

[Close]

BLAST of XM_017403373.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251NJ58 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}))

HSP 1 Score: 584.334 bits (1505), Expect = 0.000e+0
Identity = 291/398 (73.12%), Postives = 330/398 (82.91%), Query Frame = 0

Query:    1 MRISRLFLFRFSLWLLLFFTPKGHWAVKAFTGTYGINYGRIADNIPTPDKVVTLLRASKIKNVRIYDADHSVLNAFSGTGLELVVGLPNGFVKEMSTNADHALTWVKENVQAF-PKTNIVGIAIGNEILGGSDVDLWAALLGAAKNIYNATKELQLKGV-QITTAHSQAVFADSYPPSSCIFKEGV-DQYMKPLLEFFSQIGSPFCLNAYPFLAYMGSPDTIDINYALFQSTDGIDDKKSKLHYDNMLDAQVDAAYYALEDAGFKKMEVIITETGWASRGDDNEAAATVDNARTYNFNLRKRLAKKKGTPLRPKMVLKVYVFAVFNENSKPGPTSERNFGLFKADGSISYDIGYSGLKSSSAPSTVLSLKEVSTEGRS---WIYTFAACASALLLFLR 392
            M  S  F  +F    L+F TP    AV+AFTG YGINYGRIADNIP+PDKV TLLRA+KIKNVRIYDADHSVL AFSGTGL+LVVGLPNG++K+MS N DHA+ WVKENVQAF P+T I GIA+GNE+LGG+D +LW ALLGA KNIYNA KEL L  V QITTAHSQAVFA+S+PPSSCIF++ V  QYMKPLLEFFS+IGSPFCLNAYPFLAYM  P+ IDINYALFQ T GI D K+ LHYDNMLDAQ+DAAY ALED GFKKMEVIITETGWASRGDD+EAAATV+NARTYN+NLRKRLAKKKGTPLRPK V+K Y+FA+FNEN KPGPTSERNFGL+K DG+I+YDIG+ GL SSSA S  LS K++   G S   ++    + A+A LLFLR
Sbjct:    1 MMKSFWFFAQFLHVFLVFSTPIASVAVQAFTGAYGINYGRIADNIPSPDKVATLLRAAKIKNVRIYDADHSVLKAFSGTGLDLVVGLPNGYLKDMSANEDHAMDWVKENVQAFLPETRIRGIAVGNEVLGGTDYELWGALLGAVKNIYNAIKELGLTDVVQITTAHSQAVFANSFPPSSCIFRDNVKQQYMKPLLEFFSEIGSPFCLNAYPFLAYMSDPENIDINYALFQKTQGISDPKTDLHYDNMLDAQIDAAYAALEDTGFKKMEVIITETGWASRGDDSEAAATVNNARTYNYNLRKRLAKKKGTPLRPKSVVKAYIFAIFNENLKPGPTSERNFGLYKPDGTIAYDIGFHGLVSSSADSLRLSSKDIGARGWSRSQYLILPISMAAAFLLFLR 398

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BLAST of XM_017403373.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5SUE7 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}))

HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 292/398 (73.37%), Postives = 330/398 (82.91%), Query Frame = 0

Query:    1 MRISRLFLFRFSLWLLLFFTPKGHWAVKAFTGTYGINYGRIADNIPTPDKVVTLLRASKIKNVRIYDADHSVLNAFSGTGLELVVGLPNGFVKEMSTNADHALTWVKENVQAF-PKTNIVGIAIGNEILGGSDVDLWAALLGAAKNIYNATKELQLKGV-QITTAHSQAVFADSYPPSSCIFKEGV-DQYMKPLLEFFSQIGSPFCLNAYPFLAYMGSPDTIDINYALFQSTDGIDDKKSKLHYDNMLDAQVDAAYYALEDAGFKKMEVIITETGWASRGDDNEAAATVDNARTYNFNLRKRLAKKKGTPLRPKMVLKVYVFAVFNENSKPGPTSERNFGLFKADGSISYDIGYSGLKSSSAPSTVLSLKEVSTEGRS---WIYTFAACASALLLFLR 392
            M  S  F  +F    L+F T     AV+AFTG YGINYGRIADNIP+PDKV TLLRA+KIKNVRIYDADHSVL AFSGTGL+LVVGLPNG++K+MS N DHA+ WVKENVQAF P+T I GIA+GNE+LGG+D +LW ALLGA KNIYNA KEL L  V QITTAHSQAVFA+S+PPSSCIF++ V  QYMKPLLEFFS+IGSPFCLNAYPFLAYM  P+ IDINYALFQ T GI D K+ LHYDNMLDAQ+DAAY ALEDAGFKKMEVIITETGWASRGDDNEAAATV+NARTYN+NLRKRLAKKKGTPLRPK V+K Y+FA+FNEN KPGPTSERNFGL+K DG+I+YDIG+ GL SSSA S  LS K++   G S   ++    + A+A LLFLR
Sbjct:    1 MMKSFWFFAQFLHVFLVFSTLIASVAVQAFTGAYGINYGRIADNIPSPDKVATLLRAAKIKNVRIYDADHSVLKAFSGTGLDLVVGLPNGYLKDMSANEDHAMDWVKENVQAFLPETRIRGIAVGNEVLGGTDYELWGALLGAVKNIYNAIKELGLTDVVQITTAHSQAVFANSFPPSSCIFRDNVKQQYMKPLLEFFSEIGSPFCLNAYPFLAYMSDPENIDINYALFQKTQGISDPKTDLHYDNMLDAQIDAAYAALEDAGFKKMEVIITETGWASRGDDNEAAATVNNARTYNYNLRKRLAKKKGTPLRPKSVVKAYIFAIFNENLKPGPTSERNFGLYKPDGTIAYDIGFHGLVSSSADSLRLSSKDIGARGWSRSQYLILPISMAAAFLLFLR 398

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BLAST of XM_017403373.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314XU27 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}))

HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0
Identity = 292/398 (73.37%), Postives = 330/398 (82.91%), Query Frame = 0

Query:    1 MRISRLFLFRFSLWLLLFFTPKGHWAVKAFTGTYGINYGRIADNIPTPDKVVTLLRASKIKNVRIYDADHSVLNAFSGTGLELVVGLPNGFVKEMSTNADHALTWVKENVQAF-PKTNIVGIAIGNEILGGSDVDLWAALLGAAKNIYNATKELQLKGV-QITTAHSQAVFADSYPPSSCIFKEGV-DQYMKPLLEFFSQIGSPFCLNAYPFLAYMGSPDTIDINYALFQSTDGIDDKKSKLHYDNMLDAQVDAAYYALEDAGFKKMEVIITETGWASRGDDNEAAATVDNARTYNFNLRKRLAKKKGTPLRPKMVLKVYVFAVFNENSKPGPTSERNFGLFKADGSISYDIGYSGLKSSSAPSTVLSLKEVSTEGRS---WIYTFAACASALLLFLR 392
            M  S  F  +F    L+F T     AV+AFTG YGINYGRIADNIP+PDKV TLLRA+KIKNVRIYDADHSVL AFSGTGL+LVVGLPNG++K+MS N DHA+ WVKENVQAF P+T I GIA+GNE+LGG+D +LW ALLGA KNIYNA KEL L  V QITTAHSQAVFA+S+PPSSCIF++ V  QYMKPLLEFFS+IGSPFCLNAYPFLAYM  P+ IDINYALFQ T GI D K+ LHYDNMLDAQ+DAAY ALEDAGFKKMEVIITETGWASRGDDNEAAATV+NARTYN+NLRKRLAKKKGTPLRPK V+K Y+FA+FNEN KPGPTSERNFGL+K DG+I+YDIG+ GL SSSA S  LS K++   G S   ++    + A+A LLFLR
Sbjct:    1 MMKSFWFFAQFLHVFLVFSTLIASVAVQAFTGAYGINYGRIADNIPSPDKVATLLRAAKIKNVRIYDADHSVLKAFSGTGLDLVVGLPNGYLKDMSANEDHAMDWVKENVQAFLPETRIRGIAVGNEVLGGTDYELWGALLGAVKNIYNAIKELGLTDVVQITTAHSQAVFANSFPPSSCIFRDNVKQQYMKPLLEFFSEIGSPFCLNAYPFLAYMSDPENIDINYALFQKTQGISDPKTDLHYDNMLDAQIDAAYAALEDAGFKKMEVIITETGWASRGDDNEAAATVNNARTYNYNLRKRLAKKKGTPLRPKSVVKAYIFAIFNENLKPGPTSERNFGLYKPDGTIAYDIGFRGLVSSSADSLRLSSKDLGARGWSRSQYLILPISMAAAFLLFLR 398


Match Name	Stats	Description
A0A7N2L126	E-Value: 0.000e+0, PID: 78.95	(1->3)-beta-glucan endohydrolase {ECO:0000256\|ARBA... [more]
A0A540MEP5	E-Value: 0.000e+0, PID: 74.87	(1->3)-beta-glucan endohydrolase {ECO:0000256\|ARBA... [more]
A0A5B6YSY3	E-Value: 0.000e+0, PID: 75.51	(Putative glucan endo-1,3-beta-glucosidase 11 {ECO... [more]
A0A2C9VPQ7	E-Value: 0.000e+0, PID: 77.30	(1->3)-beta-glucan endohydrolase {ECO:0000256\|ARBA... [more]
A0A5B6YST8	E-Value: 0.000e+0, PID: 76.01	(Putative glucan endo-1,3-beta-glucosidase 14-like... [more]
A0A498HXW8	E-Value: 0.000e+0, PID: 77.30	(1->3)-beta-glucan endohydrolase {ECO:0000256\|ARBA... [more]
A0A836DH50	E-Value: 0.000e+0, PID: 76.30	(Glucan endo-1,3-beta-glucosidase {ECO:0000313\|EMB... [more]
A0A251NJ58	E-Value: 0.000e+0, PID: 73.12	(1->3)-beta-glucan endohydrolase {ECO:0000256\|ARBA... [more]
A0A6P5SUE7	E-Value: 0.000e+0, PID: 73.37	(1->3)-beta-glucan endohydrolase {ECO:0000256\|ARBA... [more]
A0A314XU27	E-Value: 0.000e+0, PID: 73.37	(1->3)-beta-glucan endohydrolase {ECO:0000256\|ARBA... [more]

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.