XM_017403182.1

Resource Type: 
Polypeptide
Name: 
XM_017403182.1
Identifier: 
XM_017403182.1-protein
Sequence: 
MTKTPLIPLLVVLIAAVLLPSPTVGEVKTLKISNDARPMILFEKFGFTHS
GFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVV
DSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMD
VRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRN
KRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQF
IRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIG
ETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAAR
NLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASL
AFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL
Sequence Length: 
440
Sequence Checksum: 
5aa13e714cdd12c18be5bbf872dc2554
View location in JBrowse: 
DCARv2_Chr6:27731148..27732470-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017403182.1, derives from mRNA, XM_017403182.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017403182.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017403182.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1P555 ((Lung seven transmembrane receptor family protein {ECO:0000313|EMBL:PWA80879.1}))

HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 370/432 (85.65%), Postives = 404/432 (93.52%), Query Frame = 0
 
Query:    9 LLVVLIAAVLLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
            L VVL+   L  +P+  E+K+LKI +D RPMIL EKFGFTH+GFVS++++ VSVTS+LSQPDPSRLGFFLLSEES+IQVLLE+QQNPNFCVVDSH+I+LLFTFRDL+PPPHSSFNKSYPV+ PNEYSLFFANC PES V+MDVRTE+YN D+G T KDYL AGLTQLP LY  F++VY+AF+G W   C++NKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+ASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASLAFY+VMFYMFRPVE+NEYFVLDDE+EEAAE+ALRDEEFEL
Sbjct:    4 LTVVLLLFALTITPSTAEIKSLKIRSDNRPMILLEKFGFTHTGFVSVAISAVSVTSSLSQPDPSRLGFFLLSEESMIQVLLEIQQNPNFCVVDSHFITLLFTFRDLSPPPHSSFNKSYPVTYPNEYSLFFANCNPESLVTMDVRTELYNTDDGNT-KDYLSAGLTQLPGLYFVFSLVYLAFVGVWVSICLKNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSSAAEEIASLAFYLVMFYMFRPVEKNEYFVLDDEDEEAAELALRDEEFEL 434
[Close]
BLAST of XM_017403182.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251SQQ6 ((Putative lung seven transmembrane receptor family protein {ECO:0000313|EMBL:OTG01168.1}))

HSP 1 Score: 751.125 bits (1938), Expect = 0.000e+0
Identity = 369/423 (87.23%), Postives = 397/423 (93.85%), Query Frame = 0
 
Query:   18 LLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
            LL  P+  E+K+LKI +D RPMILFEKFGFTH+GF S++++ VSVTS+LSQPDP+RLGFFLLSEESLIQVLLELQQNPNFCVVDS +ISLLFTFRDL+PPPHSSFNKSYPV+ PNEYSLFFANC PES V+MDVRTE+YN DNG   KDYL AGLTQLPSLY  F+IVY+ FLGFW   C++NKRSVHRIHLLMGGLL+MKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+ASIVIGETGPFI+DWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASL FY+VMFYMFRPVE+NEYFVLDDE+EEAAEMALRDEEFEL
Sbjct:   17 LLTVPSTAEIKSLKIRSDNRPMILFEKFGFTHTGFASVAISSVSVTSSLSQPDPARLGFFLLSEESLIQVLLELQQNPNFCVVDSKFISLLFTFRDLSPPPHSSFNKSYPVTYPNEYSLFFANCNPESLVTMDVRTELYNTDNGA--KDYLSAGLTQLPSLYFIFSIVYLCFLGFWISLCLKNKRSVHRIHLLMGGLLIMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASIVIGETGPFIRDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSSAAEEIASLVFYLVMFYMFRPVEKNEYFVLDDEDEEAAEMALRDEEFEL 437
[Close]
BLAST of XM_017403182.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6K334 ((Uncharacterized protein {ECO:0000313|EMBL:PLY69482.1}))

HSP 1 Score: 751.125 bits (1938), Expect = 0.000e+0
Identity = 369/432 (85.42%), Postives = 402/432 (93.06%), Query Frame = 0
 
Query:    9 LLVVLIAAVLLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
            L+ VL+   +  +PT  E+K+LKI +D RPMILFEKFGFTH+G+VS++++ VSVTS+L+QPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDS +ISLLFTFRDL+PPP SSFNKSYPV+ PNEYSLFFANC P+S V+MDVRTE+YN D+G TTKDYL AGLTQLPSLY  F+++Y+ FLGFW   C +N+RS HRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+ASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASL FYMVMFYMFRPVE+NEYFVLDDE+EEAAEMALRDEEFEL
Sbjct:    8 LIAVLLLVFISTAPTTAEIKSLKIRSDNRPMILFEKFGFTHTGYVSVAISSVSVTSSLAQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSKFISLLFTFRDLSPPPQSSFNKSYPVTYPNEYSLFFANCNPQSIVTMDVRTELYNTDDG-TTKDYLSAGLTQLPSLYFIFSLIYLCFLGFWISICFKNQRSFHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEEIASLVFYMVMFYMFRPVEKNEYFVLDDEDEEAAEMALRDEEFEL 438
[Close]
BLAST of XM_017403182.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7NTM0 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4101540.1}))

HSP 1 Score: 749.584 bits (1934), Expect = 0.000e+0
Identity = 371/433 (85.68%), Postives = 402/433 (92.84%), Query Frame = 0
 
Query:   12 VLIAAVLL----PSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
            +LIA  LL     +PT  E+K+LKI +D RPMILFEKFGFTH+G+VS++++ VSVTS+L+QPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDS +ISLLFTFRDL+PPP SSFNKSYPV+ PNEYSLFFANC P+S V+MDVRTE+YN D+G TTKDYL AGLTQLPSLY  F+++Y+ FLGFW   C +N+RS HRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+ASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASL FYMVMFYMFRPVE+NEYFVLDDE+EEAAEMALRDEEFEL
Sbjct:    7 ILIAVFLLVFISTAPTTAEIKSLKIRSDNRPMILFEKFGFTHTGYVSVAISSVSVTSSLAQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSKFISLLFTFRDLSPPPQSSFNKSYPVTYPNEYSLFFANCNPQSIVTMDVRTELYNTDDG-TTKDYLSAGLTQLPSLYFIFSLIYLCFLGFWISICFKNQRSFHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEEIASLVFYMVMFYMFRPVEKNEYFVLDDEDEEAAEMALRDEEFEL 438
[Close]
BLAST of XM_017403182.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XH29 ((Transmembrane receptor, eukaryota {ECO:0000313|EMBL:KVH90584.1}))

HSP 1 Score: 744.577 bits (1921), Expect = 0.000e+0
Identity = 364/429 (84.85%), Postives = 401/429 (93.47%), Query Frame = 0
 
Query:   12 VLIAAVLLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
            VL+   L  +P++GE+K+LKI +D RPMILFEKFGFTH+GFVSI+++ VSVTSTLSQPDPSRLGFFLLSEES IQVLLELQQNPNFCVVDS +I+ LFTFRDL+PPP SSFN++YPV+ PNEYSLFFANC P+S V+MDV TE+YN D+G +TKDYL AGLTQLPSLY  F+++Y++FLGFW   C +N+RSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+ASIVIGETGPFI+DWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWV+ AAEE+ASL FYMVM+YMFRPVE+NEYFVLDDE+EEAAEMALRDEEFEL
Sbjct:   11 VLLFFFLFTAPSMGEIKSLKIRSDNRPMILFEKFGFTHTGFVSIAISSVSVTSTLSQPDPSRLGFFLLSEESQIQVLLELQQNPNFCVVDSKFIARLFTFRDLSPPPQSSFNRTYPVTHPNEYSLFFANCNPQSLVTMDVHTELYNTDDG-STKDYLSAGLTQLPSLYFIFSLIYLSFLGFWISICFKNQRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASIVIGETGPFIRDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVANAAEEIASLVFYMVMYYMFRPVEKNEYFVLDDEDEEAAEMALRDEEFEL 438
[Close]
BLAST of XM_017403182.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PWT5 ((Uncharacterized protein {ECO:0000313|EMBL:PSR98228.1}))

HSP 1 Score: 729.169 bits (1881), Expect = 0.000e+0
Identity = 348/426 (81.69%), Postives = 386/426 (90.61%), Query Frame = 0
 
Query:   17 VLLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTL--SQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
            ++L  PT  E+K+LKI+ DARPMILFEKFGFTH+G V+I+V+ V VTS+L  S  DP+RLGFFLLSEESLIQVL+ELQQNP+FCV+DS YI  LF FRDL+PP  +S+N SYPV+ PNEYSLFFANC PESQV+M+VRTEVYN D  G+ +DYL AGLTQLP+L+  F+I Y AFLGFW   C  NKRSVHRIHLLM GLL+MKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIR+VLLFTVIVLIGTGWSFLKPFLQ+KEKKVLMIVIPLQVLAN+AS+VIGETGPFIKDWVTWNQVFLLVDI+CCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS A EE+ASLAFY+VMFYMFRPVE+NEYFVL+D EEEAAEMALRDE+F+L
Sbjct:   13 LILALPTAAEIKSLKITADARPMILFEKFGFTHAGHVTITVSAVLVTSSLPASVADPTRLGFFLLSEESLIQVLIELQQNPSFCVLDSKYIKFLFNFRDLSPPSQTSYNHSYPVTAPNEYSLFFANCVPESQVTMNVRTEVYNLD-AGSVRDYLSAGLTQLPTLFFLFSISYFAFLGFWIYICFTNKRSVHRIHLLMAGLLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRIVLLFTVIVLIGTGWSFLKPFLQDKEKKVLMIVIPLQVLANVASVVIGETGPFIKDWVTWNQVFLLVDIVCCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNATEEIASLAFYIVMFYMFRPVEKNEYFVLNDGEEEAAEMALRDEDFDL 437
[Close]
BLAST of XM_017403182.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6N261 ((Uncharacterized protein {ECO:0000313|EMBL:KAD4384379.1}))

HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 356/419 (84.96%), Postives = 387/419 (92.36%), Query Frame = 0
 
Query:   22 PTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
            P   E+K+LKI +D RPMILFEKFGFTH+G V+IS++ VSVTS+LSQPDPS LGFFLLSEESLIQVL+ELQQNP FCVV+S +I  L TFRDL+PPPHSSFN SYPV+LPNEYSLFFANC PES V+MDVRTE+YN D+G   KDYL AG TQLPS+Y  F++VY+ FLGFW   C +N+RSVHRIHLLMGGLL+MKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQE+EKKVLMIVIPLQVLAN+ASIVIGETGPFIKDW+TWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASL FY+VMFYMFRPVE+NEYFVLDDE+EEAAEMALRDEEFEL
Sbjct:   20 PATAEIKSLKIRSDNRPMILFEKFGFTHTGVVTISISSVSVTSSLSQPDPSHLGFFLLSEESLIQVLIELQQNPTFCVVNSKFIKRLLTFRDLSPPPHSSFNNSYPVTLPNEYSLFFANCNPESLVTMDVRTELYNTDDGA--KDYLSAGQTQLPSIYFIFSLVYLCFLGFWISLCFKNQRSVHRIHLLMGGLLIMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVLMIVIPLQVLANVASIVIGETGPFIKDWMTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSSAAEEIASLVFYLVMFYMFRPVEKNEYFVLDDEDEEAAEMALRDEEFEL 436
[Close]
BLAST of XM_017403182.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AT65 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58611.1}) (Fragment))

HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 369/438 (84.25%), Postives = 406/438 (92.69%), Query Frame = 0
 
Query:    3 KTPLIPLLVVLIAAVLLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
            K P +P  VVL+   LL +P   E+K LKI+ D RPMILFEKFGFTH+G VS++V+ VSVTSTL++PDPSRLGFFLLSEESLIQVL+ELQQNP+FCV+DS YI LLFTFRDL+PPPH+SFN+SYPV+ PNEYSLFFANCAPESQV+MDVRTEV+N+D GG  KDYLPAGLT+LP+L+  F+++YIAFLGFW   C +NKRS HRIHLLM GLL+MKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+AS+VIGETGPFI+DWVTWNQVFLLVDI+CCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASLAFY+VMFYMFRPVERNEYFVLD+EEEEAAEMALRDEEFEL
Sbjct:   23 KMPKMPHAVVLLLFALLLTPITAEIKNLKITADPRPMILFEKFGFTHTGHVSVAVSSVSVTSTLARPDPSRLGFFLLSEESLIQVLIELQQNPSFCVLDSKYIKLLFTFRDLSPPPHTSFNQSYPVTAPNEYSLFFANCAPESQVTMDVRTEVFNFDAGGV-KDYLPAGLTKLPTLFFLFSLIYIAFLGFWIYICYKNKRSFHRIHLLMAGLLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASVVIGETGPFIRDWVTWNQVFLLVDIVCCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEEIASLAFYLVMFYMFRPVERNEYFVLDEEEEEAAEMALRDEEFEL 459
[Close]
BLAST of XM_017403182.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AP88 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58612.1}))

HSP 1 Score: 722.62 bits (1864), Expect = 0.000e+0
Identity = 361/420 (85.95%), Postives = 395/420 (94.05%), Query Frame = 0
 
Query:   21 SPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
             P   E+KTLKI+ D RPMILFEKFGFTH+G VS++V+ VSVTS+L++PDPS LGFFLLSEESLIQVLLE QQNP+FCV+DS YISLLFTFRDL+PPPH+SFN+SYPV+ PNEYSLFFANCAPESQV+MDVRTEV+N+D GG  KDYLPAGLT+LP+L+  F+++YIAFLGFW   C +NKRS HRIHLLM GLL+MKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+AS+VIGETGPFI+DWVTWNQVFLLVDI+CCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASLAFY+VMFYMFRPVERNEYFVLD+EEEEAAEMALRDEEFEL
Sbjct:   18 GPITAEIKTLKITADPRPMILFEKFGFTHTGHVSVAVSSVSVTSSLARPDPSHLGFFLLSEESLIQVLLEFQQNPSFCVLDSKYISLLFTFRDLSPPPHTSFNRSYPVTAPNEYSLFFANCAPESQVTMDVRTEVFNFDAGGV-KDYLPAGLTKLPTLFFLFSLIYIAFLGFWIYICYKNKRSFHRIHLLMAGLLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASVVIGETGPFIRDWVTWNQVFLLVDIVCCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEEIASLAFYLVMFYMFRPVERNEYFVLDEEEEEAAEMALRDEEFEL 436
[Close]
BLAST of XM_017403182.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7APS5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58609.1}) (Fragment))

HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 368/438 (84.02%), Postives = 406/438 (92.69%), Query Frame = 0
 
Query:    3 KTPLIPLLVVLIAAVLLPSPTVGEVKTLKISNDARPMILFEKFGFTHSGFVSISVAGVSVTSTLSQPDPSRLGFFLLSEESLIQVLLELQQNPNFCVVDSHYISLLFTFRDLAPPPHSSFNKSYPVSLPNEYSLFFANCAPESQVSMDVRTEVYNWDNGGTTKDYLPAGLTQLPSLYSFFAIVYIAFLGFWCLNCVRNKRSVHRIHLLMGGLLVMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANIASIVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIAYLYFTRIVVFALRTIAAYKYQWVSFAAEEVASLAFYMVMFYMFRPVERNEYFVLDDEEEEAAEMALRDEEFEL 440
            K P +P  VVL+   LL +P   E+K LKI+ D RPMILFEKFGFTH+G VS++V+ VSVTSTL++PDPSRLGFFLLSEESLIQVL+ELQQNP+FCV+DS YI LLFTFRDL+PPPH+SFN+SYPV+ PNEYSLFFANCAPESQV+MDVRTEV+N+D GG  KDYLPAGLT+LP+L+  F+++Y+AFLGFW   C +NKRS HRIHLLM GLL+MKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLAN+AS+VIGETGPFI+DWVTWNQVFLLVDI+CCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVI YLYFTRIVVFAL+TIAAYKYQWVS AAEE+ASLAFY+VMFYMFRPVERNEYFVLD+EEEEAAEMALRDEEFEL
Sbjct:   23 KMPKMPHAVVLLLFALLLTPITAEIKNLKITADPRPMILFEKFGFTHTGHVSVAVSSVSVTSTLARPDPSRLGFFLLSEESLIQVLIELQQNPSFCVLDSKYIKLLFTFRDLSPPPHTSFNQSYPVTAPNEYSLFFANCAPESQVTMDVRTEVFNFDAGGV-KDYLPAGLTKLPTLFFLFSLIYLAFLGFWIYICYKNKRSFHRIHLLMAGLLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEKEKKVLMIVIPLQVLANVASVVIGETGPFIRDWVTWNQVFLLVDIVCCCAIIFPIVWSIRSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTIAAYKYQWVSNAAEEIASLAFYLVMFYMFRPVERNEYFVLDEEEEEAAEMALRDEEFEL 459
Match NameStatsDescription
A0A2U1P555E-Value: 0.000e+0, PID: 85.65(Lung seven transmembrane receptor family protein ... [more]
A0A251SQQ6E-Value: 0.000e+0, PID: 87.23(Putative lung seven transmembrane receptor family... [more]
A0A2J6K334E-Value: 0.000e+0, PID: 85.42(Uncharacterized protein {ECO:0000313|EMBL:PLY6948... [more]
A0A6S7NTM0E-Value: 0.000e+0, PID: 85.68(Uncharacterized protein {ECO:0000313|EMBL:CAB4101... [more]
A0A103XH29E-Value: 0.000e+0, PID: 84.85(Transmembrane receptor, eukaryota {ECO:0000313|EM... [more]
A0A2R6PWT5E-Value: 0.000e+0, PID: 81.69(Uncharacterized protein {ECO:0000313|EMBL:PSR9822... [more]
A0A5N6N261E-Value: 0.000e+0, PID: 84.96(Uncharacterized protein {ECO:0000313|EMBL:KAD4384... [more]
A0A5B7AT65E-Value: 0.000e+0, PID: 84.25(Uncharacterized protein {ECO:0000313|EMBL:MPA5861... [more]
A0A5B7AP88E-Value: 0.000e+0, PID: 85.95(Uncharacterized protein {ECO:0000313|EMBL:MPA5861... [more]
A0A5B7APS5E-Value: 0.000e+0, PID: 84.02(Uncharacterized protein {ECO:0000313|EMBL:MPA5860... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.