Resource Type:
Polypeptide
Name:
XM_017399234.1
Identifier:
XM_017399234.1-protein
Sequence:
MAGRKRKKIKSLAEALNDGQISNEDAKEAVDLWSELPMELLELIISRLTL
KDNICISAVCKKWQSAAISVRVVQKSPWIMHFPKHGELFEFYDPCQRKTY
LVELPELRSCRVCYAKENWLLLYKPMTQRLLFFNPFTRELIKLPKFELSY
QIVAFSSAPTSPNCLVFTVRHVSPTVVSISTCNPGATQWSTVNYRNRLPF
VSSIWNKLVFCNGLFYCLSLTGWLGIYDTQEHTWTVCGVPPPKCPENFYS
KNWWKGKFMTEYKGDILVIYTCENENPIVYKLERTNWTEMNTLGGVTLFA
SFLTSHARTDLLGVMRNSVYFTKVRFYGKRCVSYSLDHTRYYPRKQCHDW
GEQDPFESIWIEPPEDFTDFVKT
Sequence Length:
373
Sequence Checksum:
767bb0d01666b306f9db2857ebd003d2
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017399234.1, derives from mRNA, XM_017399234.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017399234.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017399234.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ACM4 ((Putative F-box/kelch-repeat protein isoform 1 {ECO:0000313|EMBL:MPA54419.1}) (Fragment))
HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0
Identity = 279/376 (74.20%), Postives = 330/376 (87.77%), Query Frame = 0
Match: A0A5B7ACM4 ((Putative F-box/kelch-repeat protein isoform 1 {ECO:0000313|EMBL:MPA54419.1}) (Fragment))
HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0
Identity = 279/376 (74.20%), Postives = 330/376 (87.77%), Query Frame = 0
Query: 1 MAGRKRKKIKSLAEALNDGQ-ISNEDAKEAVD--LWSELPMELLELIISRLTLKDNICISAVCKKWQSAAISVRVVQKSPWIMHFPKHGELFEFYDPCQRKTYLVELPELRSCRVCYAKENWLLLYKPMTQRLLFFNPFTRELIKLPKFELSYQIVAFSSAPTSPNCLVFTVRHVSPTVVSISTCNPGATQWSTVNYRNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGIYDTQEHTWTVCGVPPPKCPENFYSKNWWKGKFMTEYKGDILVIYTCENENPIVYKLERTN--WTEMNTLGGVTLFASFLTSHARTDLLGVMRNSVYFTKVRFYGKRCVSYSLDHTRYYPRKQCHDWGEQDPFESIWIEPPEDFTDFV 371
MAGRKR+K+K LAEA+ +G+ ++ E+ KE + WSELP ELLELI+SRLTLK+NIC SAVCK+W S AISVRVV ++PWIM+FPK G+L+EFYDP QRKTY +EL ELR RVCY K+ WLLLY+P T RL FFNPFT+ELIKLP+FE++YQIVAFSSAPTSP C+VFTV+H+SPTVV++STC+PGA +W+TVNY+NRLPFVSSIWNKLVFCNGLFYCLSLTGWLG++D QE TW + VPPPKCPENF++KNWWKGKFM E+KGDI V+YTC NENPI++KL++T W EM TL GVTLFASFL+SHARTDLLG+MRNSVYF+KVRFYGKRC+SYSLD RYYPRKQCHDWGEQDPFESIWIEPP+D + F+
Sbjct: 30 MAGRKRRKVKLLAEAIMEGKRVNTEEKKEPHEQQTWSELPTELLELIMSRLTLKENICASAVCKRWLSVAISVRVVSQAPWIMYFPKFGDLYEFYDPSQRKTYSLELLELRGSRVCYTKDGWLLLYRPRTHRLFFFNPFTQELIKLPRFEITYQIVAFSSAPTSPGCIVFTVKHISPTVVAVSTCHPGAVEWTTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPQERTWVIHVVPPPKCPENFFAKNWWKGKFMAEHKGDIFVVYTCCNENPIIFKLDQTKKVWEEMKTLSGVTLFASFLSSHARTDLLGMMRNSVYFSKVRFYGKRCISYSLDDCRYYPRKQCHDWGEQDPFESIWIEPPKDLSTFI 405
BLAST of XM_017399234.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZDI7 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646})
HSP 1 Score: 601.282 bits (1549), Expect = 0.000e+0
Identity = 275/376 (73.14%), Postives = 322/376 (85.64%), Query Frame = 0
Match: A0A5J4ZDI7 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646})
HSP 1 Score: 601.282 bits (1549), Expect = 0.000e+0
Identity = 275/376 (73.14%), Postives = 322/376 (85.64%), Query Frame = 0
Query: 1 MAGRKRKKIKSLAEALNDGQISNEDAKEAVD---LWSELPMELLELIISRLTLKDNICISAVCKKWQSAAISVRVVQKSPWIMHFPKHGELFEFYDPCQRKTYLVELPELRSCRVCYAKENWLLLYKPMTQRLLFFNPFTRELIKLPKFELSYQIVAFSSAPTSPNCLVFTVRHVSPTVVSISTCNPGATQWSTVNYRNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGIYDTQEHTWTVCGVPPPKCPENFYSKNWWKGKFMTEYKGDILVIYTCENENPIVYKLERTN--WTEMNTLGGVTLFASFLTSHARTDLLGVMRNSVYFTKVRFYGKRCVSYSLDHTRYYPRKQCHDWGEQDPFESIWIEPPEDFTDFV 371
M GRKR+K+K LAE + DG+ N + K+ D WSELP+ELLELI+SRLTLK+NIC SAVCK+W S AISVRVV + PWIM+FPK G+ +EFYDP QRKTY +E PEL CRVCY K+ WLLLY+P T + FFNPFTRELI+LP+FE++YQI AFSSAPTSP C+ FTV+H+SPTVV+ISTC+PGA +W+TVNY NRLPFVSSIWNK+VFCNGLFYCLSLTGWLG++D QEHTW + VPPPKCPENF++KNWWKGKFM E+KGDI VIYTC NENPI++KL++T W EM TL GVTLFASFL+SHARTDLLG+MRNSVYF+KVRFYGK C+SYSLD+ RYYPRKQCHDWGEQDPFESIWIEPP DF+ F+
Sbjct: 1 MPGRKRRKVKLLAETIMDGKSVNTEEKKDPDEQQTWSELPIELLELIVSRLTLKENICASAVCKRWLSVAISVRVVNQPPWIMYFPKSGDFYEFYDPSQRKTYSIEFPELLGCRVCYTKDGWLLLYRPRTDSVFFFNPFTRELIRLPRFEMTYQIAAFSSAPTSPGCIAFTVKHISPTVVAISTCHPGAMEWTTVNYHNRLPFVSSIWNKVVFCNGLFYCLSLTGWLGVFDPQEHTWIIRAVPPPKCPENFFAKNWWKGKFMAEHKGDIFVIYTCYNENPIIFKLDQTEKAWEEMKTLSGVTLFASFLSSHARTDLLGMMRNSVYFSKVRFYGKHCISYSLDNCRYYPRKQCHDWGEQDPFESIWIEPPNDFSTFI 376
BLAST of XM_017399234.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A118K1Z3 ((F-box domain, cyclin-like protein {ECO:0000313|EMBL:KVI03555.1}))
HSP 1 Score: 589.341 bits (1518), Expect = 0.000e+0
Identity = 276/375 (73.60%), Postives = 323/375 (86.13%), Query Frame = 0
Match: A0A118K1Z3 ((F-box domain, cyclin-like protein {ECO:0000313|EMBL:KVI03555.1}))
HSP 1 Score: 589.341 bits (1518), Expect = 0.000e+0
Identity = 276/375 (73.60%), Postives = 323/375 (86.13%), Query Frame = 0
Query: 1 MAGRKRKKIKSLAEAL-NDGQISNED--AKEAVDLWSELPMELLELIISRLTLKDNICISAVCKKWQSAAISVRVVQKSPWIMHFPKHGELFEFYDPCQRKTYLVELPELRSCRVCYAKENWLLLYKPMTQRLLFFNPFTRELIKLPKFELSYQIVAFSSAPTSPNCLVFTVRHVSPTVVSISTCNPGATQWSTVNYRNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGIYDTQEHTWTVCGVPPPKCPENFYSKNWWKGKFMTEYKGDILVIYTCENENPIVYKLERTN--WTEMNTLGGVTLFASFLTSHARTDLLGVMRNSVYFTKVRFYGKRCVSYSLDHTRYYPRKQCHDWGEQDPFESIWIEPPEDFTDF 370
MAGRKR+++K LA +D ++S + +E + WS LP+ELLE IIS+LTLKDNI SAVCK+W S A+SVRVV K PW+M+FPK G FEFYDP QRKTY +ELPEL CR+CY K+ WLLLYKP TQR+LFFNPFTRE+IKLP+FE++YQIVAFS++P SPNC+VFTV+HVSPTVV+ISTC+PGAT W+TVNY NRLPFVSSIWNKLVFCNGLFYCLSLTGWLG+YD QE TWT+ VPPP+CP+NF+ KNWWKGKFM E++GDI VIYTC +ENPI+YKL++ N W EM TL GVTLFASFL+SHARTDLLG+MRNSVYF+KVRFYGKRC+SYSLDH RYYPRKQCHDWGEQDPFESIW+EPPED + F
Sbjct: 1 MAGRKRRRLKLLAVTFKDDTRVSTKGNIEQEEQEAWSFLPVELLEFIISQLTLKDNIRTSAVCKQWFSVALSVRVVNKPPWLMYFPKLGHRFEFYDPSQRKTYSLELPELHGCRICYNKDGWLLLYKPRTQRVLFFNPFTREMIKLPRFEMTYQIVAFSTSPKSPNCIVFTVKHVSPTVVAISTCHPGATAWTTVNYHNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVYDPQELTWTIRIVPPPRCPDNFFVKNWWKGKFMAEHRGDIFVIYTCYSENPIIYKLDQANKEWVEMKTLEGVTLFASFLSSHARTDLLGMMRNSVYFSKVRFYGKRCISYSLDHHRYYPRKQCHDWGEQDPFESIWVEPPEDVSTF 375
BLAST of XM_017399234.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1PY57 ((F-box domain, cyclin-like protein {ECO:0000313|EMBL:PWA90637.1}))
HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 273/375 (72.80%), Postives = 321/375 (85.60%), Query Frame = 0
Match: A0A2U1PY57 ((F-box domain, cyclin-like protein {ECO:0000313|EMBL:PWA90637.1}))
HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 273/375 (72.80%), Postives = 321/375 (85.60%), Query Frame = 0
Query: 1 MAGRKRKKIKSLAEALNDG-QISNED--AKEAVDLWSELPMELLELIISRLTLKDNICISAVCKKWQSAAISVRVVQKSPWIMHFPKHGELFEFYDPCQRKTYLVELPELRSCRVCYAKENWLLLYKPMTQRLLFFNPFTRELIKLPKFELSYQIVAFSSAPTSPNCLVFTVRHVSPTVVSISTCNPGATQWSTVNYRNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGIYDTQEHTWTVCGVPPPKCPENFYSKNWWKGKFMTEYKGDILVIYTCENENPIVYKLERTN--WTEMNTLGGVTLFASFLTSHARTDLLGVMRNSVYFTKVRFYGKRCVSYSLDHTRYYPRKQCHDWGEQDPFESIWIEPPEDFTDF 370
MAGRKR+++K L+ D ++S D +E + WS LP+ELLE I+S+LTL+DNI SAVCK+W S A+SVRVV K PW+M+FPK G FEFYDP QRKTY +ELPEL CR+CY K+ WLLLYKP TQR+LFFNPFTRE+IKLP+FE++YQIVAFS++P SP+C+VFTV+HVSPTVV+ISTC+PGA+ W+TVNY NRLPFVSSIWNKLVFCNGLFYCLSLTGWLG+YD E TWT+ +PPPKCP+NF+ KNWWKGKFM E+KGDI VIYTC ENPI+YKL++TN W EM TL GVTLFASFL+SHARTDLLG+MRNSVYF+KVRFYGKRC+SYSLDH RYYPRKQCHDWGEQDPFESIW+EPPED + F
Sbjct: 1 MAGRKRRRLKLLSVTYEDNTRVSTTDNADQEEQEAWSFLPVELLEFIVSQLTLRDNIRTSAVCKRWLSVALSVRVVNKPPWLMYFPKLGNRFEFYDPSQRKTYSLELPELHGCRICYNKDGWLLLYKPRTQRVLFFNPFTREMIKLPRFEMTYQIVAFSASPKSPSCIVFTVKHVSPTVVAISTCHPGASVWTTVNYHNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVYDPLELTWTIRIIPPPKCPDNFFVKNWWKGKFMAEHKGDIYVIYTCYTENPIIYKLDQTNKEWIEMETLEGVTLFASFLSSHARTDLLGMMRNSVYFSKVRFYGKRCISYSLDHHRYYPRKQCHDWGEQDPFESIWVEPPEDASTF 375
BLAST of XM_017399234.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251VNP0 ((Putative F-box family protein {ECO:0000313|EMBL:OTG36662.1}))
HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0
Identity = 275/375 (73.33%), Postives = 319/375 (85.07%), Query Frame = 0
Match: A0A251VNP0 ((Putative F-box family protein {ECO:0000313|EMBL:OTG36662.1}))
HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0
Identity = 275/375 (73.33%), Postives = 319/375 (85.07%), Query Frame = 0
Query: 1 MAGRKRKKIKSL-AEALNDGQISNEDAKEA--VDLWSELPMELLELIISRLTLKDNICISAVCKKWQSAAISVRVVQKSPWIMHFPKHGELFEFYDPCQRKTYLVELPELRSCRVCYAKENWLLLYKPMTQRLLFFNPFTRELIKLPKFELSYQIVAFSSAPTSPNCLVFTVRHVSPTVVSISTCNPGATQWSTVNYRNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGIYDTQEHTWTVCGVPPPKCPENFYSKNWWKGKFMTEYKGDILVIYTCENENPIVYKLERTN--WTEMNTLGGVTLFASFLTSHARTDLLGVMRNSVYFTKVRFYGKRCVSYSLDHTRYYPRKQCHDWGEQDPFESIWIEPPEDFTDF 370
MAGRKR+++K L A +D +IS + E + WS LP+ELLE IIS+LTLKDNI SAVCK W S A+SVRVV K PW+M+FPK G FEFYDP +RKTY +ELPEL CR+CY K+ WLLLYKP TQR+LFFNPFTRE+IKLP+FE++YQIVAFSS+P SPNC+VFTV+HVSPTVV+ISTC PGAT W+TVNY NRLPFVSSIWNKLVFC+GLFYCLSLTGWLG+YD E TW++ VPPP+CP+NF+ KNWWKGKFM E+KGDI VIYTC +ENPI+YKL++ N W EM TL GVTLFASFL+SHARTDLLG+MRNSVYF+KVRFYGKRC+SYSLDH RYYPRKQCHDWGEQDPFESIW+EPPED + F
Sbjct: 1 MAGRKRRRLKLLTASYKDDTRISKQGDAEQNEQEAWSFLPVELLEFIISQLTLKDNIRTSAVCKTWFSVALSVRVVNKPPWLMYFPKLGNRFEFYDPSKRKTYSLELPELHGCRICYNKDGWLLLYKPRTQRVLFFNPFTREMIKLPRFEMTYQIVAFSSSPKSPNCIVFTVKHVSPTVVAISTCYPGATVWTTVNYHNRLPFVSSIWNKLVFCHGLFYCLSLTGWLGVYDPLELTWSIRVVPPPRCPDNFFVKNWWKGKFMAEHKGDIFVIYTCYSENPIIYKLDQVNKEWVEMKTLEGVTLFASFLSSHARTDLLGMMRNSVYFSKVRFYGKRCISYSLDHRRYYPRKQCHDWGEQDPFESIWVEPPEDVSTF 375
BLAST of XM_017399234.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6KUV7 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0
Identity = 273/376 (72.61%), Postives = 322/376 (85.64%), Query Frame = 0
Match: A0A2J6KUV7 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0
Identity = 273/376 (72.61%), Postives = 322/376 (85.64%), Query Frame = 0
Query: 1 MAGRKRKKIKSLAEAL-NDGQISNED---AKEAVDLWSELPMELLELIISRLTLKDNICISAVCKKWQSAAISVRVVQKSPWIMHFPKHGELFEFYDPCQRKTYLVELPELRSCRVCYAKENWLLLYKPMTQRLLFFNPFTRELIKLPKFELSYQIVAFSSAPTSPNCLVFTVRHVSPTVVSISTCNPGATQWSTVNYRNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGIYDTQEHTWTVCGVPPPKCPENFYSKNWWKGKFMTEYKGDILVIYTCENENPIVYKLERTN--WTEMNTLGGVTLFASFLTSHARTDLLGVMRNSVYFTKVRFYGKRCVSYSLDHTRYYPRKQCHDWGEQDPFESIWIEPPEDFTDF 370
MAGRKR+++K L+ ND ++S + +E + WS LP+ELLE IIS+LTLKDNI SAVCK+W S A+SVRVV K PW+M+FPK G FEFYDP QRKTY +ELPEL CR+CY K+ WLLLYKP TQR+LFFNPFTRE+IKLP+FE++YQIVAFS++P SPNC+VFTV+HVSPTVV+ISTC+PGAT W+TVNY NRLPFVSSIWNKLVFCNG+FYCLSLTGWLG+YD E TWT+ VPPP+CP+NF+ KNWWKGKFM E+KGDI VIYTC +ENPI+YKL++ N W EM +L GVTLFASFL+SHARTDL+G+MRNSVYF+KVRFYGKRC+SYSLDH RYYPRKQCHDWGEQDPFESIW+EPPED + F
Sbjct: 1 MAGRKRRRLKLLSVTFKNDTKVSTKGDIEQEEEEEAWSFLPVELLEFIISQLTLKDNIRTSAVCKRWLSVAVSVRVVNKPPWLMYFPKLGHRFEFYDPSQRKTYSLELPELHGCRICYNKDGWLLLYKPRTQRVLFFNPFTREMIKLPRFEMTYQIVAFSTSPKSPNCIVFTVKHVSPTVVAISTCHPGATVWTTVNYHNRLPFVSSIWNKLVFCNGVFYCLSLTGWLGVYDPHELTWTIRIVPPPRCPDNFFVKNWWKGKFMAEHKGDIFVIYTCYSENPIIYKLDQGNKEWIEMKSLEGVTLFASFLSSHARTDLVGMMRNSVYFSKVRFYGKRCISYSLDHCRYYPRKQCHDWGEQDPFESIWVEPPEDVSKF 376
BLAST of XM_017399234.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6JHV8 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 577.785 bits (1488), Expect = 0.000e+0
Identity = 268/373 (71.85%), Postives = 316/373 (84.72%), Query Frame = 0
Match: A0A2J6JHV8 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 577.785 bits (1488), Expect = 0.000e+0
Identity = 268/373 (71.85%), Postives = 316/373 (84.72%), Query Frame = 0
Query: 1 MAGRKRKKIKSLAEALNDGQ---ISNEDAKEAVDLWSELPMELLELIISRLTLKDNICISAVCKKWQSAAISVRVVQKSPWIMHFPKHGELFEFYDPCQRKTYLVELPELRSCRVCYAKENWLLLYKPMTQRLLFFNPFTRELIKLPKFELSYQIVAFSSAPTSPNCLVFTVRHVSPTVVSISTCNPGATQWSTVNYRNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGIYDTQEHTWTVCGVPPPKCPENFYSKNWWKGKFMTEYKGDILVIYTCENENPIVYKLERTN--WTEMNTLGGVTLFASFLTSHARTDLLGVMRNSVYFTKVRFYGKRCVSYSLDHTRYYPRKQCHDWGEQDPFESIWIEPPEDFT 368
MAGRKR+K + L+E D + D ++ + WS LP ELLELIISRLTLKDNI S+VCKKW S A+SVR V K PW+M+FPK G LFEFYDP +RKTY +ELP+L CR+CY K+ WLLLYKP TQR+LFFNPFTRE+IKLP+FE++YQIVAFS++P S NC++FTV+HVSPTVV+ISTC+P AT+W+TVNY NRLPFVSSIWNKLVFCNGLFYCLSLTGWLG+YD EHTW++ VPPP+CP+NF+ KNWWKGKFM E KGDI VIYTC +ENPI+YKL++ N W EM TL GVTLFASFL+SHARTDLLG+MRN VYF+KVRFYGKRC+SYSLDH RYYPRKQCHDWGEQDPFESIW++PP+D +
Sbjct: 1 MAGRKRRKHRLLSETFKDDKRVSTKENDEQDHHESWSILPSELLELIISRLTLKDNIRTSSVCKKWLSVALSVRKVNKPPWLMYFPKLGHLFEFYDPSKRKTYSLELPQLHGCRICYNKDGWLLLYKPRTQRVLFFNPFTREMIKLPRFEMTYQIVAFSNSPKSQNCILFTVKHVSPTVVAISTCSPNATEWTTVNYHNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVYDPIEHTWSIRIVPPPRCPDNFFVKNWWKGKFMAENKGDIFVIYTCYSENPIIYKLDQENKEWVEMKTLEGVTLFASFLSSHARTDLLGMMRNCVYFSKVRFYGKRCISYSLDHKRYYPRKQCHDWGEQDPFESIWVDPPDDVS 373
BLAST of XM_017399234.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PFL7 (F-box domain-containing protein {ECO:0000259|Pfam:PF12937})
HSP 1 Score: 577.015 bits (1486), Expect = 0.000e+0
Identity = 274/376 (72.87%), Postives = 316/376 (84.04%), Query Frame = 0
Match: A0A5N6PFL7 (F-box domain-containing protein {ECO:0000259|Pfam:PF12937})
HSP 1 Score: 577.015 bits (1486), Expect = 0.000e+0
Identity = 274/376 (72.87%), Postives = 316/376 (84.04%), Query Frame = 0
Query: 1 MAGRKRKKIKSLA----EALNDGQISNEDAKEAVDLWSELPMELLELIISRLTLKDNICISAVCKKWQSAAISVRVVQKSPWIMHFPKHGELFEFYDPCQRKTYLVELPELRSCRVCYAKENWLLLYKPMTQRLLFFNPFTRELIKLPKFELSYQIVAFSSAPTSPNCLVFTVRHVSPTVVSISTCNPGATQWSTVNYRNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGIYDTQEHTWTVCGVPPPKCPENFYSKNWWKGKFMTEYKGDILVIYTCENENPIVYKLERTN--WTEMNTLGGVTLFASFLTSHARTDLLGVMRNSVYFTKVRFYGKRCVSYSLDHTRYYPRKQCHDWGEQDPFESIWIEPPEDFTDF 370
MAGRKR+++KSL+ E D + N + +E + WS LP+ELLE IIS+LTLKDNI SAVCK W S A+SVRVV + PW+M+FPK G FEFYDP +RKTY +ELPEL CR+CY K+ WLLLYKP TQR+LFFNPFTRE+IKLP+FE++YQIV FS++P SPNC+VFTV+HVSPTVV+ISTC PGAT W+TVNY NRLPFVSSIWNKLVFCNGLFYCLSLTGWLG+YD E TWT+ VPPP+CP+NF+ KNWWKGKFM E+KGDI VIYTC ENPI+YKL++ N W EM TL GVTLFASFL+SHA TDLLGVMRNSVYF+KVRFYGKRC+SYSLDH RYYPRKQCHDWGEQDPFESIWIE PED + F
Sbjct: 1 MAGRKRRRLKSLSVTYKEVARDSKKRNTNQEEE-EAWSFLPIELLEFIISQLTLKDNIRTSAVCKSWFSVALSVRVVNRPPWLMYFPKVGNRFEFYDPSKRKTYSLELPELHGCRICYNKDGWLLLYKPRTQRVLFFNPFTREMIKLPRFEMTYQIVVFSTSPKSPNCIVFTVKHVSPTVVAISTCYPGATVWTTVNYHNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVYDPIELTWTIRVVPPPRCPDNFFVKNWWKGKFMAEHKGDIFVIYTCHCENPIIYKLDQVNKQWIEMKTLEGVTLFASFLSSHATTDLLGVMRNSVYFSKVRFYGKRCISYSLDHRRYYPRKQCHDWGEQDPFESIWIELPEDVSTF 375
BLAST of XM_017399234.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2M5U6 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 576.244 bits (1484), Expect = 0.000e+0
Identity = 263/377 (69.76%), Postives = 325/377 (86.21%), Query Frame = 0
Match: A0A7N2M5U6 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 576.244 bits (1484), Expect = 0.000e+0
Identity = 263/377 (69.76%), Postives = 325/377 (86.21%), Query Frame = 0
Query: 1 MAGRKRKKIKSLAEALN-DGQISNEDAKEAVDL--WSELPMELLELIISRLTLKDNICISAVCKKWQSAAISVRVVQKSPWIMHFPKHGELFEFYDPCQRKTYLVELPELRSCRVCYAKENWLLLYKPMTQRLLFFNPFTRELIKLPKFELSYQIVAFSSAPTSPNCLVFTVRHVSPTVVSISTCNPGATQWSTVNYRNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGIYDTQEHTWTVCGVPPPKCPENFYSKNWWKGKFMTEYKGDILVIYTCENENPIVYKLERTN--WTEMNTLGGVTLFASFLTSHARTDLLGVMRNSVYFTKVRFYGKRCVSYSLDHTRYYPRKQCHDWGEQDPFESIWIEPPEDFTDFVK 372
MAG++R+K+KSLAE ++ + +I+ ++ +E ++L WS+LP ELLE+I+SRLTL+DN+ S VCK+W S AISVRVV +SPW+M+FPK+G L+EFYDP RKT+ +ELPEL RVCY K+ WLLLY+P + R+ FFNPF+ E+IKLP+FEL+YQIVAFS APTS NC++FTV+HVSPT+V+ISTC+PGAT+W TVNY NRLPFVSSIWNKLVFCNGLFYCLSLTGWLG++D EHTW+V VPPPKCP+NF++KNWWKGKFM E+KG+ILVIYTC +ENPI++KL+RT W EM L GVTLFASFL+SH+RTDL G+MRNSVYF KVRFYGKRC+SYSLD+ RYYPRKQCHDWGEQDPFE+IWIEPP+ F F +
Sbjct: 1 MAGKRRRKLKSLAETISGNKRIATKEKREKLELQTWSDLPTELLEVIVSRLTLEDNVRASVVCKRWHSVAISVRVVNQSPWLMYFPKYGNLYEFYDPSLRKTHSIELPELNGTRVCYTKDGWLLLYRPRSHRMFFFNPFSHEVIKLPRFELTYQIVAFSCAPTSSNCMLFTVKHVSPTIVAISTCHPGATEWVTVNYPNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPLEHTWSVLSVPPPKCPDNFFAKNWWKGKFMAEHKGEILVIYTCSSENPIIFKLDRTKMIWEEMKALDGVTLFASFLSSHSRTDLSGLMRNSVYFPKVRFYGKRCISYSLDNCRYYPRKQCHDWGEQDPFENIWIEPPQGFLSFTE 377
BLAST of XM_017399234.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6N6X6 (F-box domain-containing protein {ECO:0000259|Pfam:PF12937})
HSP 1 Score: 576.244 bits (1484), Expect = 0.000e+0
Identity = 273/376 (72.61%), Postives = 316/376 (84.04%), Query Frame = 0
Match: A0A5N6N6X6 (F-box domain-containing protein {ECO:0000259|Pfam:PF12937})
HSP 1 Score: 576.244 bits (1484), Expect = 0.000e+0
Identity = 273/376 (72.61%), Postives = 316/376 (84.04%), Query Frame = 0
Query: 1 MAGRKRKKIKSLA----EALNDGQISNEDAKEAVDLWSELPMELLELIISRLTLKDNICISAVCKKWQSAAISVRVVQKSPWIMHFPKHGELFEFYDPCQRKTYLVELPELRSCRVCYAKENWLLLYKPMTQRLLFFNPFTRELIKLPKFELSYQIVAFSSAPTSPNCLVFTVRHVSPTVVSISTCNPGATQWSTVNYRNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGIYDTQEHTWTVCGVPPPKCPENFYSKNWWKGKFMTEYKGDILVIYTCENENPIVYKLERTN--WTEMNTLGGVTLFASFLTSHARTDLLGVMRNSVYFTKVRFYGKRCVSYSLDHTRYYPRKQCHDWGEQDPFESIWIEPPEDFTDF 370
MAGRKR+++KSL+ + D + N + +E + WS LP+ELLE IIS+LTLKDNI SAVCK W S A+SVRVV + PW+M+FPK G FEFYDP +RKTY +ELPEL CR+CY K+ WLLLYKP TQR+LFFNPFTRE+IKLP+FE++YQIV FS++P SPNC+VFTV+HVSPTVV+ISTC PGAT W+TVNY NRLPFVSSIWNKLVFCNGLFYCLSLTGWLG+YD E TWT+ VPPP+CP+NF+ KNWWKGKFM E+KGDI VIYTC ENPI+YKL++ N W EM TL GVTLFASFL+SHA TDLLGVMRNSVYF+KVRFYGKRC+SYSLDH RYYPRKQCHDWGEQDPFESIWIE PED + F
Sbjct: 1 MAGRKRRRLKSLSVTYKDVARDSKKRNTNQEEE-EAWSFLPIELLEFIISQLTLKDNIRTSAVCKSWFSVALSVRVVNRPPWLMYFPKVGNRFEFYDPSKRKTYSLELPELHGCRICYNKDGWLLLYKPRTQRVLFFNPFTREMIKLPRFEMTYQIVVFSTSPKSPNCIVFTVKHVSPTVVAISTCYPGATVWTTVNYHNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVYDPIELTWTIRVVPPPRCPDNFFVKNWWKGKFMAEHKGDIFVIYTCHCENPIIYKLDQVNKQWIEMKTLEGVTLFASFLSSHATTDLLGVMRNSVYFSKVRFYGKRCISYSLDHRRYYPRKQCHDWGEQDPFESIWIELPEDVSTF 375
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7ACM4 | E-Value: 0.000e+0, PID: 74.20 | (Putative F-box/kelch-repeat protein isoform 1 {EC... [more] |
| A0A5J4ZDI7 | E-Value: 0.000e+0, PID: 73.14 | F-box domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A118K1Z3 | E-Value: 0.000e+0, PID: 73.60 | (F-box domain, cyclin-like protein {ECO:0000313|EM... [more] |
| A0A2U1PY57 | E-Value: 0.000e+0, PID: 72.80 | (F-box domain, cyclin-like protein {ECO:0000313|EM... [more] |
| A0A251VNP0 | E-Value: 0.000e+0, PID: 73.33 | (Putative F-box family protein {ECO:0000313|EMBL:O... [more] |
| A0A2J6KUV7 | E-Value: 0.000e+0, PID: 72.61 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A2J6JHV8 | E-Value: 0.000e+0, PID: 71.85 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A5N6PFL7 | E-Value: 0.000e+0, PID: 72.87 | F-box domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A7N2M5U6 | E-Value: 0.000e+0, PID: 69.76 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A5N6N6X6 | E-Value: 0.000e+0, PID: 72.61 | F-box domain-containing protein {ECO:0000259|Pfam:... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |