XM_017398761.1

Resource Type: 
Polypeptide
Name: 
XM_017398761.1
Identifier: 
XM_017398761.1-protein
Sequence: 
MAAGISAASSSTSFSLGRNPFLGPNPIWLFAPSVRKLNPSLRFKQKSLTT
VCFVVEPRNDSSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERF
TYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAA
VGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIA
LLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADV
PYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIK
SSASRASRS
Sequence Length: 
309
Sequence Checksum: 
b3a63be1c23b982b8d3e06a8e1ee5f20
View location in JBrowse: 
DCARv2_Chr6:32856360..32858738+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017398761.1, derives from mRNA, XM_017398761.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017398761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017398761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEX4 ((Putative beta-ring carotene hydroxylase {ECO:0000313|EMBL:ABB52074.1}))

HSP 1 Score: 632.098 bits (1629), Expect = 0.000e+0
Identity = 308/309 (99.68%), Postives = 308/309 (99.68%), Query Frame = 0
 
Query:    1 MAAGISAASSSTSFSLGRNPFLGPNPIWLFAPSVRKLNPSLRFKQKSLTTVCFVVEPRNDSSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIKSSASRASRS 309
            MAAGISAASSSTSFSLGRNPFLGPNPIWLFAPSVRKLNPSLRFKQKSLTTVCFVVEPRNDSSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRF VGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIKSSASRASRS
Sbjct:    1 MAAGISAASSSTSFSLGRNPFLGPNPIWLFAPSVRKLNPSLRFKQKSLTTVCFVVEPRNDSSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFAVGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIKSSASRASRS 309
[Close]
BLAST of XM_017398761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4Y5ULR6 ((Beta-carotene hydroxylase {ECO:0000313|EMBL:QDC33551.1}))

HSP 1 Score: 535.413 bits (1378), Expect = 0.000e+0
Identity = 276/313 (88.18%), Postives = 291/313 (92.97%), Query Frame = 0
 
Query:    1 MAAGISAASSSTSFSLGRNPFLGPNP------IWLFAPSVRKLNPSLRFKQKSLTTVCFVVEPRNDSSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIKSSASRAS 307
            MAAG++ ASSSTSF LGRNP   PNP      I+LF+   RKLNPS+RF +KSLTTVCFVV+PRN +S KPE+N+++DEV++  IE  S SVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALE+EINRRIKSSASRAS
Sbjct:    1 MAAGLAVASSSTSFPLGRNPNPNPNPFLRPNPIYLFS---RKLNPSIRFTKKSLTTVCFVVDPRNVNSEKPEDNSEKDEVNK--IEVVSSSVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALEMEINRRIKSSASRAS 308
[Close]
BLAST of XM_017398761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H6C8 (Fatty acid hydroxylase domain-containing protein {ECO:0000259|Pfam:PF04116})

HSP 1 Score: 444.121 bits (1141), Expect = 9.309e-156
Identity = 222/308 (72.08%), Postives = 246/308 (79.87%), Query Frame = 0
 
Query:    1 MAAGISAASSSTSFSLGRNPFLGP------NPIWLFAPSVRKLNPSLRFKQKSLTTVCFVVEPRNDSSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIKSS 302
            MA  IS A+SS S  LGRNPFLGP       P  LF PS+R+     R ++K+  TVCFVVE    S+   EN       S E + +   + RV E+ ARK+SER TYLVAAVMSS GITSMAV+AVYYRFSWQMEGGE+P SEM GTFALSVGAAVGMEFWARWAH+ALWHASLWHMHESHHKPREG FELNDVFAI NAVPAIALL+YGFFHKG  PGLCFGAGLGITVFG+AYMFVHDGLVH+RFPVGPIA+VPYFR+VAAAHQLHH +KF GVPYGLFLGPKEVE+VGG + LE EINRR + S
Sbjct:    1 MAVEISVATSSRSPRLGRNPFLGPKPTSPFTPTSLFIPSIRRHENIFRCRKKTRLTVCFVVEEEKLSTEVVENR------SEETLASQISAARVAEKLARKRSERLTYLVAAVMSSFGITSMAVMAVYYRFSWQMEGGEVPLSEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESHHKPREGPFELNDVFAITNAVPAIALLSYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPIANVPYFRRVAAAHQLHHSDKFNGVPYGLFLGPKEVEEVGGKDELEKEINRRARLS 302
[Close]
BLAST of XM_017398761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200QU52 ((Fatty acid hydroxylase {ECO:0000313|EMBL:OVA13960.1}))

HSP 1 Score: 442.58 bits (1137), Expect = 3.381e-155
Identity = 220/308 (71.43%), Postives = 247/308 (80.19%), Query Frame = 0
 
Query:    1 MAAGISAASSSTSFSLGRNPFLGP------NPIWLFAPSVRKLNPSLRFKQKSLTTVCFVVEPRNDSSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIKSS 302
            MAAG S A+S+ +F  G+NPF+G       +P  L +PS+R+ N     K+KS  TV FV+E +     K       DE S E       S RV E+ ARKKSER TYLVAAVMS+LGITSMAV AVYYRFSWQMEGGEIP SEM GTFAL+VGAAVGMEFWARWAH ALWHASLWHMHESHH+PR+G FELNDVFAI+NAVPAIALL YGFFHKG FPGLCFGAGLGITVFG+AYMFVHDGLVH+RFPVGPIA+VPYFR+VAAAH++HHM+KFKGVPYGLFLGPKE+E+VGG E LE EINRRIK S
Sbjct:    1 MAAGFSVATSARTFRFGQNPFMGSKPKTLLSPSTLLSPSIRRPNRFFTAKKKSTFTVYFVLEEQKQGISKITEEYSADESSSEGFN--QISDRVAEKLARKKSERHTYLVAAVMSTLGITSMAVAAVYYRFSWQMEGGEIPVSEMFGTFALAVGAAVGMEFWARWAHRALWHASLWHMHESHHQPRDGPFELNDVFAIINAVPAIALLNYGFFHKGLFPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPIANVPYFRRVAAAHKIHHMDKFKGVPYGLFLGPKELEEVGGMEELEKEINRRIKQS 306
[Close]
BLAST of XM_017398761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YM56 (Fatty acid hydroxylase domain-containing protein {ECO:0000259|Pfam:PF04116} (Fragment))

HSP 1 Score: 438.728 bits (1127), Expect = 3.927e-153
Identity = 228/308 (74.03%), Postives = 252/308 (81.82%), Query Frame = 0
 
Query:    1 MAAGISAASSSTSFSLGRNPFLGP------NPIWLFAPSVRKLNPSLRFKQKSLTTVCFVVEPRNDSSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIKSS 302
            MAAG+S A+SS SF  GRNPFLG        P  LF+PS+ + +  LR ++K   TVCFVVE  N ++          E S EEIE    + RV ER A+K+SERFTYLVAAVMS+ GITSMAV+AVYYRFSWQM GG++P+SEM GTFALSVGAAVGMEFWARWAH ALWHASLWHMHESHHKPREG FELNDVFAI+NAVPAIALLAYGFFHKG  PGLCFGAGLGITVFG+AYMFVHDGLVHKRFPVGPIA+VPYFR+VAAAHQLHH +KF GVPYGLFLGPKEVE+VGGHE LE EINRRIK S
Sbjct:   38 MAAGLSVAASSRSFRFGRNPFLGAKPTSILTPTSLFSPSISRFDAILRCRRKPSLTVCFVVEEENLNT----QIESCPEKSSEEIEKQISAARVAERLAKKRSERFTYLVAAVMSTCGITSMAVMAVYYRFSWQMGGGDVPFSEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHKPREGPFELNDVFAIINAVPAIALLAYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRRVAAAHQLHHSDKFNGVPYGLFLGPKEVEEVGGHEELEKEINRRIKLS 341
[Close]
BLAST of XM_017398761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YLZ9 (Fatty acid hydroxylase domain-containing protein {ECO:0000259|Pfam:PF04116} (Fragment))

HSP 1 Score: 437.958 bits (1125), Expect = 1.060e-152
Identity = 228/308 (74.03%), Postives = 252/308 (81.82%), Query Frame = 0
 
Query:    1 MAAGISAASSSTSFSLGRNPFLGP------NPIWLFAPSVRKLNPSLRFKQKSLTTVCFVVEPRNDSSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIKSS 302
            MAAG+S A+SS SF  GRNPFLG        P  LF+PS+ + +  LR ++K   TVCFVVE  N ++          E S EEIE    + RV ER A+K+SERFTYLVAAVMS+ GITSMAV+AVYYRFSWQM GG++P+SEM GTFALSVGAAVGMEFWARWAH ALWHASLWHMHESHHKPREG FELNDVFAI+NAVPAIALLAYGFFHKG  PGLCFGAGLGITVFG+AYMFVHDGLVHKRFPVGPIA+VPYFR+VAAAHQLHH +KF GVPYGLFLGPKEVE+VGG E LE EINRRIKSS
Sbjct:   46 MAAGLSVAASSRSFRFGRNPFLGAKPTSILTPTSLFSPSISRFDAILRCRRKPSLTVCFVVEEENLNT----QIESCPEKSSEEIEKQISAARVAERLAKKRSERFTYLVAAVMSTCGITSMAVMAVYYRFSWQMGGGDVPFSEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHKPREGPFELNDVFAIINAVPAIALLAYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRRVAAAHQLHHSDKFNGVPYGLFLGPKEVEEVGGLEELEKEINRRIKSS 349
[Close]
BLAST of XM_017398761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LEA0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7132137.1}))

HSP 1 Score: 435.261 bits (1118), Expect = 3.805e-152
Identity = 217/313 (69.33%), Postives = 248/313 (79.23%), Query Frame = 0
 
Query:    1 MAAGISAASSSTSFSLGRNPFLGP------NPIWLFAPSVRKLNPSLRFKQKSLTTVCFVVEPRND-SSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIKSSASRA 306
            M AGIS  ++  SF  GR+PF+ P       P +LF+  +R    +LR +++S TTVCFVV    + ++G  +    +D+   EEIE    + R+  R+ RKKSER TYLVAAVMSSLGITSMAV+AVYYRFSWQM GGEIP  EM GTFALSVGAAVGMEFWARWAH ALWHASLWHMHESHHK REG FELNDVFA++NA PAIALL+YG FHKG+FPGLCFGAGLGIT+FGIAYMFVHDGLVHKRF VGPIADVPY R+VAAAHQLHH +KFKGVPYGLFLGPKE+E+VGG+E LE EINRRIK S  R 
Sbjct:    1 MLAGISTTTTFRSF-FGRDPFIRPKPNSITTPTYLFSLPIRPHYATLRSRRRSKTTVCFVVVRDEELNNGDSQIETPKDDEQEEEIEKRITAARLAARQDRKKSERSTYLVAAVMSSLGITSMAVMAVYYRFSWQMAGGEIPPLEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHKAREGPFELNDVFAVINAAPAIALLSYGLFHKGFFPGLCFGAGLGITLFGIAYMFVHDGLVHKRFQVGPIADVPYLRRVAAAHQLHHTDKFKGVPYGLFLGPKELEEVGGNEELEKEINRRIKLSNIRC 312
[Close]
BLAST of XM_017398761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438E2J9 ((Beta-carotene 3-hydroxylase, chloroplastic {ECO:0000313|EMBL:RVW41947.1}))

HSP 1 Score: 434.106 bits (1115), Expect = 7.397e-152
Identity = 218/308 (70.78%), Postives = 243/308 (78.90%), Query Frame = 0
 
Query:    1 MAAGISAASSSTSFSLGRNPFLGP------NPIWLFAPSVRKLNPSLRFKQKSLTTVCFVVEPRNDSSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIKSS 302
            MA  IS A++S    LGRNPFLG        P  LF PS+R+     R ++K+  TVCFVVE    S+   EN       S E + +   + RV E+ ARK+SER TYLVAAVMSS GITSMAV+AVYYRFSWQMEGGE+P SEM GTFALSVGAAVGMEFWARWAH+ALWHASLWHMHESHHKPREG FELNDVFAI NAVPAIALL+YGFF KG  PGLCFGAGLGITVFG+AYMFVHDGLVH+RFPVGPIA+VPYFR+VAAAHQLHH +KF GVPYGLFLGPKEVE+VGG + LE EINRR + S
Sbjct:    1 MAVEISVATTS---RLGRNPFLGLKPTSPFTPTSLFIPSIRRQENIFRCRKKTRLTVCFVVEEEKLSTEVVENR------SEETVASQISAARVAEKLARKRSERLTYLVAAVMSSFGITSMAVMAVYYRFSWQMEGGEVPLSEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESHHKPREGPFELNDVFAITNAVPAIALLSYGFFQKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPIANVPYFRRVAAAHQLHHSDKFNGVPYGLFLGPKEVEEVGGKDELEKEINRRARLS 299
[Close]
BLAST of XM_017398761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6M9Z806 ((Beta carotene hydroxylase {ECO:0000313|EMBL:QKN89225.1}))

HSP 1 Score: 432.565 bits (1111), Expect = 3.492e-151
Identity = 228/312 (73.08%), Postives = 250/312 (80.13%), Query Frame = 0
 
Query:    1 MAAGISAASSSTSFSLGRNPFLGPNPIW--------LFAPSVRKLNPSLRFKQKSLTTVCFVVEPRNDSSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIKSSAS 304
            MAA IS A+SS  F  GRN F+ P P          LF+PS+ + +  LR ++K   TVCFVV       GK     +R E S +EIE    S RVEE+ ARKKSERFTYL+AAVMS+ GITSMAV+AVY RFSWQME GEIPY EM GTFALSVGAAVGMEFWARWAH+ALWHASLWHMHESHHKPREG FELNDVFAI+NAVPAI+LLAYGFFHKG FPG CFGAGLGITVFG+AYMFVHDGLVHKRFPVGPIA+VPYFRKVAAAHQLHH EKF+GVPYGLFLGPKE+E+VGG E LE EINRRIK S S
Sbjct:    1 MAAEISVAASSRCFRFGRNSFICPKPTISILTPTSSLFSPSITRFDAILRHRRKPSLTVCFVV-----GGGKLNQIENRGEESSDEIEKQISSARVEEKIARKKSERFTYLIAAVMSTFGITSMAVMAVYSRFSWQMESGEIPYPEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESHHKPREGPFELNDVFAIINAVPAISLLAYGFFHKGLFPGACFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRKVAAAHQLHHSEKFEGVPYGLFLGPKELEEVGGLEELEKEINRRIKLSNS 307
[Close]
BLAST of XM_017398761.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YMT9 (Fatty acid hydroxylase domain-containing protein {ECO:0000259|Pfam:PF04116} (Fragment))

HSP 1 Score: 433.335 bits (1113), Expect = 3.833e-151
Identity = 227/309 (73.46%), Postives = 250/309 (80.91%), Query Frame = 0
 
Query:    1 MAAGISAASSSTSFSLGRNPFLGPNPIW------LFAPSVRKLNPSLRFKQKSLT-TVCFVVEPRNDSSGKPENNADRDEVSREEIEAGSCSVRVEERRARKKSERFTYLVAAVMSSLGITSMAVLAVYYRFSWQMEGGEIPYSEMIGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHKPREGAFELNDVFAIMNAVPAIALLAYGFFHKGYFPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYFRKVAAAHQLHHMEKFKGVPYGLFLGPKEVEDVGGHEALELEINRRIKSS 302
            M AGI   S S  F  G NPFLGP PI       LF+PS+ + +  LR+++K  + TVCFVVE   D     +  +  +E S EEIE    + RV E+ ARK+SERFTYLVAAVMSS GITSMAV+AVYYRFSWQMEGGE+PYSEM GTFALSVGAAVGMEFWARWAH ALWHASLWHMHESHH+PREG FELNDVFAI NAVPAIALL+YG FHKG  PGLCFGAGLGITVFG+AYMFVHDGLVHKRFPVGPIA+VPYFR+VAAAHQLHH +KF GVPYGLFLGPKEVE+VGGHE LE EINRRIK S
Sbjct:   23 MTAGIYVPSRS--FRFGGNPFLGPKPISTLTPTSLFSPSISRFDAILRYRRKQPSLTVCFVVE---DEKLNTQIESPAEESSDEEIEKQISAARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFSWQMEGGEVPYSEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHRPREGPFELNDVFAITNAVPAIALLSYGLFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRRVAAAHQLHHSDKFNGVPYGLFLGPKEVEEVGGHEELEKEINRRIKLS 326
Match NameStatsDescription
Q2VEX4E-Value: 0.000e+0, PID: 99.68(Putative beta-ring carotene hydroxylase {ECO:0000... [more]
A0A4Y5ULR6E-Value: 0.000e+0, PID: 88.18(Beta-carotene hydroxylase {ECO:0000313|EMBL:QDC33... [more]
F6H6C8E-Value: 9.309e-156, PID: 72.08Fatty acid hydroxylase domain-containing protein {... [more]
A0A200QU52E-Value: 3.381e-155, PID: 71.43(Fatty acid hydroxylase {ECO:0000313|EMBL:OVA13960... [more]
A0A5B6YM56E-Value: 3.927e-153, PID: 74.03Fatty acid hydroxylase domain-containing protein {... [more]
A0A5B6YLZ9E-Value: 1.060e-152, PID: 74.03Fatty acid hydroxylase domain-containing protein {... [more]
A0A834LEA0E-Value: 3.805e-152, PID: 69.33(Uncharacterized protein {ECO:0000313|EMBL:KAF7132... [more]
A0A438E2J9E-Value: 7.397e-152, PID: 70.78(Beta-carotene 3-hydroxylase, chloroplastic {ECO:0... [more]
A0A6M9Z806E-Value: 3.492e-151, PID: 73.08(Beta carotene hydroxylase {ECO:0000313|EMBL:QKN89... [more]
A0A5B6YMT9E-Value: 3.833e-151, PID: 73.46Fatty acid hydroxylase domain-containing protein {... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.