Resource Type:
Polypeptide
Name:
XM_017400353.1
Identifier:
XM_017400353.1-protein
Sequence:
MFGGQFDGSAAFAGGGFMPSQATQSVSDHSFSSPAKNRESQQLLPLTVKQ
ISLALLSSDEKSNFSIDGVEVNSVKLVGMVTNKAERVTDVSLEIDDGTGR
IDCTKWVNESADMKEMEGITDGMYVCVHGHLKGFQGKKQLVIFCIRPLKD
FNEITYHFVECAYVHHYNTKLRVLGGGPVAGHMPTPAASMPFQGHQATPS
NQFPGVQYSSGDFGGVDKMVLEFLQQPSCVSLETGVHQDVIAKGLRIPRE
AVIKSIDVLVQEGLVYSSVDEFHFKSTTNG
Sequence Length:
280
Sequence Checksum:
e2644c9e6f94359f8ca6a2802b89ee4e
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017400353.1, derives from mRNA, XM_017400353.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017400353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017400353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AML7 ((Putative replication protein A subunit A isoform X1 {ECO:0000313|EMBL:MPA57315.1}))
HSP 1 Score: 378.252 bits (970), Expect = 9.423e-131
Identity = 182/280 (65.00%), Postives = 223/280 (79.64%), Query Frame = 0
Match: A0A5B7AML7 ((Putative replication protein A subunit A isoform X1 {ECO:0000313|EMBL:MPA57315.1}))
HSP 1 Score: 378.252 bits (970), Expect = 9.423e-131
Identity = 182/280 (65.00%), Postives = 223/280 (79.64%), Query Frame = 0
Query: 1 MFGGQFDGSAAFAGGGFMPSQATQSVSDHSFSSPAKNRESQQLLPLTVKQISLALLSSDEKSNFSIDGVEVNSVKLVGMVTNKAERVTDVSLEIDDGTGRIDCTKWVNESADMKEMEGITDGMYVCVHGHLKGFQGKKQLVIFCIRPLKDFNEITYHFVECAYVHHYNTKLRVLGGGPVAGHMPTPAASMPFQGHQATPSNQFPGVQYSSGDFGGVDKMVLEFLQQPSCVSLETGVHQDVIAKGLRIPREAVIKSIDVLVQEGLVYSSVDEFHFKSTTNG 280
M+G QFDG+AAF+GGGFMPSQATQ+ +D SFS PAKNR++Q LLPLTVKQI A SSD+KSNF IDGV+VN+V LVGMV NKAERVTDVS IDDGTGRIDC +WVNE+ D KEMEGI +GMYV VHGHLKGFQGK+QLV+F IRP+ D+NEI YHFVEC +VH +NT+LR+ G P HMP A S P +G+Q P NQF G QYS G+D+MV+++LQQPSC++ E GVH+D +A+ L+IP E +++SI L EGL+YS++DE H+KST NG
Sbjct: 1 MYGSQFDGNAAFSGGGFMPSQATQT-ADPSFS-PAKNRDTQPLLPLTVKQIREAFQSSDDKSNFLIDGVDVNNVTLVGMVFNKAERVTDVSFVIDDGTGRIDCNRWVNEAVDTKEMEGILNGMYVRVHGHLKGFQGKRQLVVFSIRPVTDYNEIAYHFVECIHVHFHNTRLRLQSGVPTPAHMPNSALSTPSKGYQGAPPNQFSG-QYSFDGLKGIDQMVIDYLQQPSCLAREKGVHRDELAQQLKIPVEKIMESIKSLEDEGLIYSTIDECHYKSTGNG 277
BLAST of XM_017400353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7W776 ((replication protein A 32 kDa subunit B-like isoform X2 {ECO:0000313|RefSeq:XP_009770105.1}))
HSP 1 Score: 369.392 bits (947), Expect = 3.519e-127
Identity = 173/283 (61.13%), Postives = 225/283 (79.51%), Query Frame = 0
Match: A0A1U7W776 ((replication protein A 32 kDa subunit B-like isoform X2 {ECO:0000313|RefSeq:XP_009770105.1}))
HSP 1 Score: 369.392 bits (947), Expect = 3.519e-127
Identity = 173/283 (61.13%), Postives = 225/283 (79.51%), Query Frame = 0
Query: 1 MFGG--QFDGSAAFAGGGFMPSQATQSVSDHSFSSPAKNRESQQLLPLTVKQISLALLSSDEKSNFSIDGVEVNSVKLVGMVTNKAERVTDVSLEIDDGTGRIDCTKWVNESADMKEMEGITDGMYVCVHGHLKGFQGKKQLVIFCIRPLKDFNEITYHFVECAYVHHYNTKLRV-LGGGPVAGHMPTPAASMPFQGHQATPSNQFPGVQYSSGDFGGVDKMVLEFLQQPSCVSLETGVHQDVIAKGLRIPREAVIKSIDVLVQEGLVYSSVDEFHFKSTTNG 280
M+GG QFDG+AAFAGGGFMPSQATQ+ DHSFS PAKNR+SQ LLPL+VKQIS A SSD+K+NF IDGV+VN+VK+VG++ NKAERVT+VS +DDGTGRIDC++WVNE+ D KEME +TDGMYV VHGHLKG GK+QLV + +RP+ D+NEI HF E YVH YN+KLR ++ +P+ AA+ P +G+QA+PS QFPG Y+ GVDKMVL++LQQPSC++ E GVH++ +A+ L++P E ++++I+ L EGLVYS++DE+H+KST NG
Sbjct: 1 MYGGNSQFDGNAAFAGGGFMPSQATQTAGDHSFS-PAKNRDSQTLLPLSVKQISEAFQSSDDKTNFLIDGVDVNNVKVVGILFNKAERVTEVSFVVDDGTGRIDCSRWVNEAVDAKEMEAVTDGMYVRVHGHLKGLLGKRQLVAYSVRPVDDYNEIASHFAEVIYVHSYNSKLRKQQDSSTMSAQVPSSAANTPLKGYQASPSTQFPG--YNMDGIRGVDKMVLDYLQQPSCLAREKGVHRNELAQQLKVPSEKILEAIESLESEGLVYSTIDEYHYKSTANG 280
BLAST of XM_017400353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6HZV5 ((Replication protein a 32 kDa subunit b {ECO:0000313|EMBL:OIS97857.1}))
HSP 1 Score: 367.466 bits (942), Expect = 1.919e-126
Identity = 172/283 (60.78%), Postives = 226/283 (79.86%), Query Frame = 0
Match: A0A1J6HZV5 ((Replication protein a 32 kDa subunit b {ECO:0000313|EMBL:OIS97857.1}))
HSP 1 Score: 367.466 bits (942), Expect = 1.919e-126
Identity = 172/283 (60.78%), Postives = 226/283 (79.86%), Query Frame = 0
Query: 1 MFGG--QFDGSAAFAGGGFMPSQATQSVSDHSFSSPAKNRESQQLLPLTVKQISLALLSSDEKSNFSIDGVEVNSVKLVGMVTNKAERVTDVSLEIDDGTGRIDCTKWVNESADMKEMEGITDGMYVCVHGHLKGFQGKKQLVIFCIRPLKDFNEITYHFVECAYVHHYNTKLRV-LGGGPVAGHMPTPAASMPFQGHQATPSNQFPGVQYSSGDFGGVDKMVLEFLQQPSCVSLETGVHQDVIAKGLRIPREAVIKSIDVLVQEGLVYSSVDEFHFKSTTNG 280
M+GG QFDG+AAFAGGGFMPSQATQ+ DHSFS PAKNR+SQ LLPL+VKQIS A SSD+K+NF IDGV+VN+VK+VG++ NKAERVT+VS +DDGTGRIDC++WVNE+ D KEME +T+GMYV VHGHLKG GK+QLV + +RP+ D+NEI HF E +VH YN+KLR ++G +P+ AA+ P +G+QA+PS QFPG Y+ GVDKMVL++LQQPSC++ E GVH++ +A+ L++P E ++++I+ L EGLVYS++DE+H+KST NG
Sbjct: 1 MYGGNSQFDGNAAFAGGGFMPSQATQTAGDHSFS-PAKNRDSQTLLPLSVKQISEAFQSSDDKTNFLIDGVDVNNVKVVGILFNKAERVTEVSFVVDDGTGRIDCSRWVNEAVDAKEMEAVTNGMYVRVHGHLKGLLGKRQLVAYSVRPVDDYNEIASHFAEVIFVHSYNSKLRRQQDSSSMSGQVPSSAANTPLKGYQASPSTQFPG--YNMDGIRGVDKMVLDYLQQPSCLAREKGVHRNELAQQLKVPSEKILEAIESLESEGLVYSTIDEYHYKSTANG 280
BLAST of XM_017400353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AQD9 ((Putative replication protein A subunit A isoform X1 {ECO:0000313|EMBL:MPA57313.1}))
HSP 1 Score: 367.081 bits (941), Expect = 2.276e-126
Identity = 181/281 (64.41%), Postives = 219/281 (77.94%), Query Frame = 0
Match: A0A5B7AQD9 ((Putative replication protein A subunit A isoform X1 {ECO:0000313|EMBL:MPA57313.1}))
HSP 1 Score: 367.081 bits (941), Expect = 2.276e-126
Identity = 181/281 (64.41%), Postives = 219/281 (77.94%), Query Frame = 0
Query: 1 MFGGQFDGSAAFAGGGFMPSQATQSVSDHSFSSPAKNRESQQLLPLTVKQISLALLSSDEKSNFSIDGVEVNSVKLVGMVTNKAERVTDVSLEIDDGTGRIDCTKWVNESADMKEMEGITDGMYVCVHGHLKGFQGKKQLVIFCIRPLKDFNEITYHFVECAYVHHYNTKLRVL-GGGPVAGHMPTPAASMPFQGHQATPSNQFPGVQYSSGDFGGVDKMVLEFLQQPSCVSLETGVHQDVIAKGLRIPREAVIKSIDVLVQEGLVYSSVDEFHFKSTTNG 280
M+G QFDG+AAF+GGGFMPSQATQ+ D SFS PAKNR++Q LLPLTVKQIS A SSD+KSNF IDGV+VN+V LVGMV NKAERVTDV IDDGTGRIDC +WVNE+ D KEMEGI DGMYV VHGHLKGFQGK+QLV+F IRP+ D+NEI HFVEC YVH +NT+L+ L G P H+P A + P +G+Q P NQF VQYS G+D+MV+++LQQPSC++ E GVH D +A+ L IP E + +SI L +EGL+YS++DE H+KST NG
Sbjct: 1 MYGSQFDGNAAFSGGGFMPSQATQAY-DPSFS-PAKNRDTQPLLPLTVKQISEAFQSSDDKSNFLIDGVDVNNVTLVGMVFNKAERVTDVFFVIDDGTGRIDCNRWVNEAIDTKEMEGILDGMYVRVHGHLKGFQGKRQLVVFSIRPVADYNEIACHFVECIYVHFHNTRLQKLQSGAPTPAHIPNSALTTPSKGYQGAPPNQF-SVQYSIDGLKGIDQMVIDYLQQPSCLAREKGVHLDELAQQLNIPLEKIKESIKSLEEEGLIYSTIDECHYKSTGNG 278
BLAST of XM_017400353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7W633 ((replication protein A 32 kDa subunit B-like isoform X1 {ECO:0000313|RefSeq:XP_009770104.1}))
HSP 1 Score: 365.155 bits (936), Expect = 2.025e-125
Identity = 171/283 (60.42%), Postives = 223/283 (78.80%), Query Frame = 0
Match: A0A1U7W633 ((replication protein A 32 kDa subunit B-like isoform X1 {ECO:0000313|RefSeq:XP_009770104.1}))
HSP 1 Score: 365.155 bits (936), Expect = 2.025e-125
Identity = 171/283 (60.42%), Postives = 223/283 (78.80%), Query Frame = 0
Query: 1 MFGG--QFDGSAAFAGGGFMPSQATQSVSDHSFSSPAKNRESQQLLPLTVKQISLALLSSDEKSNFSIDGVEVNSVKLVGMVTNKAERVTDVSLEIDDGTGRIDCTKWVNESADMKEMEGITDGMYVCVHGHLKGFQGKKQLVIFCIRPLKDFNEITYHFVECAYVHHYNTKLRV-LGGGPVAGHMPTPAASMPFQGHQATPSNQFPGVQYSSGDFGGVDKMVLEFLQQPSCVSLETGVHQDVIAKGLRIPREAVIKSIDVLVQEGLVYSSVDEFHFKSTTNG 280
M+GG QFDG+AAFAGGGFMPSQATQ+ DHSFS PAKNR+SQ LLPL+VKQIS A SSD+K+NF IDGV+VN+VK+VG++ NKAERVT+VS +DDGTGRIDC++WVNE+ D KEME +TDGMYV VHGHLKG GK+QLV + +RP+ D+NEI HF E YVH YN+KLR ++ +P+ AA+ P +G+QA+PS QF Y+ GVDKMVL++LQQPSC++ E GVH++ +A+ L++P E ++++I+ L EGLVYS++DE+H+KST NG
Sbjct: 1 MYGGNSQFDGNAAFAGGGFMPSQATQTAGDHSFS-PAKNRDSQTLLPLSVKQISEAFQSSDDKTNFLIDGVDVNNVKVVGILFNKAERVTEVSFVVDDGTGRIDCSRWVNEAVDAKEMEAVTDGMYVRVHGHLKGLLGKRQLVAYSVRPVDDYNEIASHFAEVIYVHSYNSKLRKQQDSSTMSAQVPSSAANTPLKGYQASPSTQFQFPGYNMDGIRGVDKMVLDYLQQPSCLAREKGVHRNELAQQLKVPSEKILEAIESLESEGLVYSTIDEYHYKSTANG 282
BLAST of XM_017400353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1CQ28 ((Replication factor A {ECO:0000313|EnsemblPlants:PGSC0003DMT400072321}))
HSP 1 Score: 361.688 bits (927), Expect = 4.509e-124
Identity = 171/283 (60.42%), Postives = 221/283 (78.09%), Query Frame = 0
Match: M1CQ28 ((Replication factor A {ECO:0000313|EnsemblPlants:PGSC0003DMT400072321}))
HSP 1 Score: 361.688 bits (927), Expect = 4.509e-124
Identity = 171/283 (60.42%), Postives = 221/283 (78.09%), Query Frame = 0
Query: 1 MFGG--QFDGSAAFAGGGFMPSQATQSVSDHSFSSPAKNRESQQLLPLTVKQISLALLSSDEKSNFSIDGVEVNSVKLVGMVTNKAERVTDVSLEIDDGTGRIDCTKWVNESADMKEMEGITDGMYVCVHGHLKGFQGKKQLVIFCIRPLKDFNEITYHFVECAYVHHYNTKLRVL-GGGPVAGHMPTPAASMPFQGHQATPSNQFPGVQYSSGDFGGVDKMVLEFLQQPSCVSLETGVHQDVIAKGLRIPREAVIKSIDVLVQEGLVYSSVDEFHFKSTTNG 280
M+GG QFDG+AAF+GGGFMPSQATQ+ DHSFS PAKNR+SQ L+PLTVKQIS A SSD+K+NF IDGV+VN+VKLVG++ NK ERVTDVS +DDGTGR+DC +WVNE+ D KEME +T+GMYV VHGHLKGF GKKQL+ + +RP+ D+NEI YHF + YVH YN+ LR + +P+ A + P +G+QA+ SNQFPG YS GVDKMVL+FLQQPSC++LE GVH++ + + L++P E + +++D L EGL+Y+++DEFH+KST NG
Sbjct: 1 MYGGNNQFDGNAAFSGGGFMPSQATQTAGDHSFS-PAKNRDSQTLIPLTVKQISEAFQSSDDKTNFLIDGVDVNNVKLVGILCNKMERVTDVSFVVDDGTGRLDCFRWVNEAVDTKEMEAVTNGMYVRVHGHLKGFHGKKQLMAYSVRPVDDYNEIAYHFAQVIYVHSYNSSLRKQHDSSSMPAQVPSSAFNTPLKGYQASASNQFPG--YSMDGIRGVDKMVLDFLQQPSCLALEKGVHRNELVQQLQLPSEKISEALDSLESEGLIYTTIDEFHYKSTGNG 280
BLAST of XM_017400353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2AUC6 ((Uncharacterized protein {ECO:0000313|EMBL:TMW85320.1}))
HSP 1 Score: 360.533 bits (924), Expect = 1.275e-123
Identity = 169/283 (59.72%), Postives = 221/283 (78.09%), Query Frame = 0
Match: A0A6N2AUC6 ((Uncharacterized protein {ECO:0000313|EMBL:TMW85320.1}))
HSP 1 Score: 360.533 bits (924), Expect = 1.275e-123
Identity = 169/283 (59.72%), Postives = 221/283 (78.09%), Query Frame = 0
Query: 1 MFGG--QFDGSAAFAGGGFMPSQATQSVSDHSFSSPAKNRESQQLLPLTVKQISLALLSSDEKSNFSIDGVEVNSVKLVGMVTNKAERVTDVSLEIDDGTGRIDCTKWVNESADMKEMEGITDGMYVCVHGHLKGFQGKKQLVIFCIRPLKDFNEITYHFVECAYVHHYNTKLRVL-GGGPVAGHMPTPAASMPFQGHQATPSNQFPGVQYSSGDFGGVDKMVLEFLQQPSCVSLETGVHQDVIAKGLRIPREAVIKSIDVLVQEGLVYSSVDEFHFKSTTNG 280
M+GG QFDG+AAF+GGGFMPSQATQ+ DHSFS PAKNR+SQ L+PLTVKQIS A SSD+K+NF +DGV+VN+VKLVG++ NK ERVTDVS +DDGTGR+DC +WVNE+ D KEME +T+GMYV VHGHLKGF GKKQL+ + +RP+ D+NEI YHF + YVH YN+ LR + +P+ A + P +G+QA+ SNQFPG YS GVDKMVL++LQQPSC++LE GVH++ + + L++P E + +++D L EGL+Y+++DEFH+KST NG
Sbjct: 1 MYGGNNQFDGNAAFSGGGFMPSQATQTAGDHSFS-PAKNRDSQNLIPLTVKQISEAFQSSDDKTNFLVDGVDVNNVKLVGILCNKVERVTDVSFGVDDGTGRLDCFRWVNEAVDTKEMEAVTNGMYVRVHGHLKGFHGKKQLMAYSVRPVDDYNEIAYHFAQVIYVHSYNSSLRKQHDSSSMPSQVPSSAFNTPLKGYQASASNQFPG--YSMDGIRGVDKMVLDYLQQPSCLALEKGVHRNQLVQQLQLPSEKISEALDSLESEGLIYTTIDEFHYKSTGNG 280
BLAST of XM_017400353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8FH46 ((replication protein A 32 kDa subunit B-like {ECO:0000313|RefSeq:XP_016555085.1}))
HSP 1 Score: 357.066 bits (915), Expect = 2.471e-122
Identity = 167/283 (59.01%), Postives = 224/283 (79.15%), Query Frame = 0
Match: A0A1U8FH46 ((replication protein A 32 kDa subunit B-like {ECO:0000313|RefSeq:XP_016555085.1}))
HSP 1 Score: 357.066 bits (915), Expect = 2.471e-122
Identity = 167/283 (59.01%), Postives = 224/283 (79.15%), Query Frame = 0
Query: 1 MFGG--QFDGSAAFAGGGFMPSQATQSVSDHSFSSPAKNRESQQLLPLTVKQISLALLSSDEKSNFSIDGVEVNSVKLVGMVTNKAERVTDVSLEIDDGTGRIDCTKWVNESADMKEMEGITDGMYVCVHGHLKGFQGKKQLVIFCIRPLKDFNEITYHFVECAYVHHYNTKLRVLGGGP-VAGHMPTPAASMPFQGHQATPSNQFPGVQYSSGDFGGVDKMVLEFLQQPSCVSLETGVHQDVIAKGLRIPREAVIKSIDVLVQEGLVYSSVDEFHFKSTTNG 280
M+GG QFDG+AAF+GGGFMPSQATQ+ SDHSFS PAKNR+SQ L+PLTVKQIS A SSD+K+NF IDGV+VN+VKLVG++ NKAE +T VS +DDGTGR+DC +WVNE+ D KEME +T+G+YV VHGHLKGFQGKKQL+ + +RP+ D+NEI HF E YVH YN++LR ++ +P+ + + P +G+QA+ SNQFPG ++ GGV KMVL++LQQPSC++LE GVH++ +A+ LR+P E ++++++ L EGLVYS++D+FH+KST N
Sbjct: 1 MYGGNNQFDGNAAFSGGGFMPSQATQTASDHSFS-PAKNRDSQTLIPLTVKQISEAFQSSDDKTNFLIDGVDVNNVKLVGILFNKAEMLTAVSFVVDDGTGRLDCFRWVNEAVDTKEMEALTNGIYVRVHGHLKGFQGKKQLMAYSVRPVDDYNEIASHFAEVIYVHSYNSRLRKQQDSSFMSAQVPSSSFNTPLKGYQASASNQFPG--FNMDGIGGVHKMVLDYLQQPSCLALEKGVHRNELAQQLRVPSEKIMEAMEALESEGLVYSTIDDFHYKSTANA 280
BLAST of XM_017400353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: K4D369 ((RPA32b {ECO:0000313|EMBL:ALP75899.1}))
HSP 1 Score: 357.066 bits (915), Expect = 2.944e-122
Identity = 167/283 (59.01%), Postives = 221/283 (78.09%), Query Frame = 0
Match: K4D369 ((RPA32b {ECO:0000313|EMBL:ALP75899.1}))
HSP 1 Score: 357.066 bits (915), Expect = 2.944e-122
Identity = 167/283 (59.01%), Postives = 221/283 (78.09%), Query Frame = 0
Query: 1 MFGG--QFDGSAAFAGGGFMPSQATQSVSDHSFSSPAKNRESQQLLPLTVKQISLALLSSDEKSNFSIDGVEVNSVKLVGMVTNKAERVTDVSLEIDDGTGRIDCTKWVNESADMKEMEGITDGMYVCVHGHLKGFQGKKQLVIFCIRPLKDFNEITYHFVECAYVHHYNTKLRVL-GGGPVAGHMPTPAASMPFQGHQATPSNQFPGVQYSSGDFGGVDKMVLEFLQQPSCVSLETGVHQDVIAKGLRIPREAVIKSIDVLVQEGLVYSSVDEFHFKSTTNG 280
M+GG QFDG+AAF+GGGFMPSQATQ+ DHSFS PAKNR+SQ L+PLTVKQIS A SSD+K+NF +DGV+VN+VKLVG++ NK ERVTDVS +DDGTGR+DC +WVNE+ D KEME +T+GMYV VHGHLKGF GKKQL+ + +RP+ D+NEI YHF + YVH YN+ LR + +P+ + + P +G+QA+ SNQFPG YS GVDKMVL++LQQPSC++LE GVH++ + + L++P E + ++++ L EGL+Y+++DEFH+KST NG
Sbjct: 1 MYGGNNQFDGNAAFSGGGFMPSQATQTAGDHSFS-PAKNRDSQTLIPLTVKQISEAFQSSDDKTNFLVDGVDVNNVKLVGILCNKVERVTDVSFGVDDGTGRLDCFRWVNEAVDTKEMEAVTNGMYVRVHGHLKGFHGKKQLMAYSVRPVDDYNEIAYHFAQVIYVHSYNSSLRKQHDSSSMPSQVPSSSFNTPLKGYQASASNQFPG--YSMDGIRGVDKMVLDYLQQPSCLALEKGVHRNQLVQQLQLPSEKISEALESLESEGLIYTTIDEFHYKSTGNG 280
BLAST of XM_017400353.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7SQB0 ((Uncharacterized protein {ECO:0000313|EMBL:CBI17841.3}))
HSP 1 Score: 356.295 bits (913), Expect = 4.484e-122
Identity = 172/276 (62.32%), Postives = 216/276 (78.26%), Query Frame = 0
Match: D7SQB0 ((Uncharacterized protein {ECO:0000313|EMBL:CBI17841.3}))
HSP 1 Score: 356.295 bits (913), Expect = 4.484e-122
Identity = 172/276 (62.32%), Postives = 216/276 (78.26%), Query Frame = 0
Query: 5 QFDGSAAFAGGGFMPSQATQSVSDHSFSSPAKNRESQQLLPLTVKQISLALLSSDEKSNFSIDGVEVNSVKLVGMVTNKAERVTDVSLEIDDGTGRIDCTKWVNESADMKEMEGITDGMYVCVHGHLKGFQGKKQLVIFCIRPLKDFNEITYHFVECAYVHHYNTKLRVLGGGPVAGHMPTPAASMPFQGHQATPSNQFPGVQYSSGDFGGVDKMVLEFLQQPSCVSLETGVHQDVIAKGLRIPREAVIKSIDVLVQEGLVYSSVDEFHFKSTTNG 280
QFDG+AAF+GGGFMPSQATQ+ ++ FS PA+NR++Q LLPLTVKQIS A LSSD+KSNF IDGVEVN+V LVGMV NKAERVTDV +DDGTGRIDC +WVNE+ D KEMEGI DGMYV VHGHLKGFQGK+ L +F IRP+ DFNEI HF+EC YVH YNTK RV GGP H+ PA P +G+QA+ NQF G QY +G GVD++V+++LQQP ++ + GV +D +A+ L +P + +++SI L +EGL+YS++DE+H+KST NG
Sbjct: 6 QFDGNAAFSGGGFMPSQATQA-AEPGFS-PARNRDTQALLPLTVKQISEAFLSSDDKSNFLIDGVEVNNVTLVGMVFNKAERVTDVGFMLDDGTGRIDCNRWVNEAVDTKEMEGILDGMYVRVHGHLKGFQGKRHLNVFSIRPVTDFNEIASHFIECIYVHIYNTKSRVQAGGPTQSHVTNPAIGTPLKGYQASQPNQFSG-QYGAG-LKGVDQLVIDYLQQPQSLARDQGVGRDELAQQLNVPVDKIMESIRSLEEEGLIYSTIDEWHYKSTGNG 277
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AML7 | E-Value: 9.423e-131, PID: 65.00 | (Putative replication protein A subunit A isoform ... [more] |
| A0A1U7W776 | E-Value: 3.519e-127, PID: 61.13 | (replication protein A 32 kDa subunit B-like isofo... [more] |
| A0A1J6HZV5 | E-Value: 1.919e-126, PID: 60.78 | (Replication protein a 32 kDa subunit b {ECO:00003... [more] |
| A0A5B7AQD9 | E-Value: 2.276e-126, PID: 64.41 | (Putative replication protein A subunit A isoform ... [more] |
| A0A1U7W633 | E-Value: 2.025e-125, PID: 60.42 | (replication protein A 32 kDa subunit B-like isofo... [more] |
| M1CQ28 | E-Value: 4.509e-124, PID: 60.42 | (Replication factor A {ECO:0000313|EnsemblPlants:P... [more] |
| A0A6N2AUC6 | E-Value: 1.275e-123, PID: 59.72 | (Uncharacterized protein {ECO:0000313|EMBL:TMW8532... [more] |
| A0A1U8FH46 | E-Value: 2.471e-122, PID: 59.01 | (replication protein A 32 kDa subunit B-like {ECO:... [more] |
| K4D369 | E-Value: 2.944e-122, PID: 59.01 | (RPA32b {ECO:0000313|EMBL:ALP75899.1})[more] |
| D7SQB0 | E-Value: 4.484e-122, PID: 62.32 | (Uncharacterized protein {ECO:0000313|EMBL:CBI1784... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |