XM_017362788.1

Resource Type: 
Polypeptide
Name: 
XM_017362788.1
Identifier: 
XM_017362788.1-protein
Sequence: 
MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRR
EGLQANQFPQAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLS
IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT
KVVIDHGAIPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLASGA
LPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLV
HSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVL
IPALRTVGNIVTGDDVQTQCIINFGALPCLLSLLTHNHKKSIKKEACWTI
SNITAGNKEQIQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGS
HDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGN
SGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDET
LPTGDGNQAGFNLGGADGNLPSGGFNFG
Sequence Length: 
528
Sequence Checksum: 
b3f09ea8ee30624b6024b27d7f9ca51f
View location in JBrowse: 
DCARv2_Chr7:526724..533896-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017362788.1, derives from mRNA, XM_017362788.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017362788.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017362788.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AC24 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 986.097 bits (2548), Expect = 0.000e+0
Identity = 482/530 (90.94%), Postives = 504/530 (95.09%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFP---QAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAIPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIINFGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGFNF 527
            MSLRP+ARTEVRRNRYKVAVDADEGRRRREDNM+EIRK+KREESLLKKRREGLQA QFP       VEKKL  ES+P MVAGVWSD+SN+QLEATT FRKLLSIERSPPIEEVIQSGVVPRF+EFLMRED+PQLQFEAAWALTNIASGTSENTKVVIDHGA+PIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVL  GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQ+LVHSNDEEVLTDACWALSYLSDGTNDKIQAVI+AGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCII+ GALPCLLSLL+HNHKKSIKKEACWTISNITAGN+EQIQAVI AGL GPLVNLLQ AEFDIKKEAAWAISNATSGG+HDQIK+LV+Q CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSG+VN+YAQLID+AEGLEKIENLQSHDNNEIYEKAVKILETYWL EEDETLP+GDG+Q GFN GG D  LPSGGFNF
Sbjct:    1 MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQFPADIHTSTVEKKL--ESLPSMVAGVWSDNSNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFIEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIIDHGALPCLLSLLSHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIGPLVNLLQIAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGDVNFYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWL-EEDETLPSGDGSQPGFNFGGNDVQLPSGGFNF 527
[Close]
BLAST of XM_017362788.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EIK9 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 978.393 bits (2528), Expect = 0.000e+0
Identity = 476/531 (89.64%), Postives = 501/531 (94.35%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFP---QAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAIPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIINFGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGFNFG 528
            MSLRP+ARTEVRRNRYKVAVDA+EGRRRREDNM+EIRK+KREESLLKKRREGLQA QFP    A  VEKKL  ES+P +VAGVWS+DSN+QLEATT FRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED+PQLQFEAAWALTNIASGTSENTKVVIDHGA+PIFVKLL SPSDDVREQAVWALGNVAGDSPRCRDLVL +GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF+QT+PALPALQRL+HS+DEEVLTDACWALSYLSDGTNDKIQAVI+AGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQ II  GALPCLL+LLTHNHKKSIKKEACWTISNITAGNKEQIQAVI AGL  PLVNLLQ AEFDIKKEAAWAISNATSGG+H+QIK+LV Q CIKPLCDLLVCPDPRI+TVCLEGLENILKVGE EKNLGNSG+VNYYAQLID+AEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLP+GDG Q GFN GG D  +PSGGFNFG
Sbjct:    1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQFPSNIHASTVEKKL--ESLPSLVAGVWSNDSNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQTKPALPALQRLIHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQSIIEHGALPCLLNLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVGQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEVEKNLGNSGDVNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGPQPGFNFGGNDVQVPSGGFNFG 529
[Close]
BLAST of XM_017362788.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C9T2 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 977.237 bits (2525), Expect = 0.000e+0
Identity = 477/530 (90.00%), Postives = 503/530 (94.91%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFP---QAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAIPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIINFGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGFNF 527
            MSLRP+ARTEVRRNRYKVAVDA+EGRRRREDNM+EIRK+KREESLLKKRREGLQ  QFP    A  VEKKL  ES+P MVAGVWSD+SN+QL+ATT FRKLLSIERSPPIEEVIQSGVVPRFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGA+PIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVL  GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQ+LVHSNDEEVLTDACWALSYLSDGTNDKIQAVI+AGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCII+ GALPCLLSLLTHNHKKSIKKEACWTISNITAGN+EQIQAVI AGL  PLVNLLQ AEFDIKKEAAWAISNATSGG+++QIK+LV+Q CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSG+VN+YAQLID+AEGLEKIENLQSHDNNEIYEKAVKILETYWLEEE+ETLP+GDG+Q GFN G  D  LPSGGFNF
Sbjct:    1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLLKKRREGLQVQQFPADIHASTVEKKL--ESLPSMVAGVWSDNSNLQLDATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLNHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIIDHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQTAEFDIKKEAAWAISNATSGGTNEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGDVNFYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEENETLPSGDGSQPGFNFGRNDIQLPSGGFNF 528
[Close]
BLAST of XM_017362788.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GPX7 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 975.696 bits (2521), Expect = 0.000e+0
Identity = 475/530 (89.62%), Postives = 500/530 (94.34%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFP---QAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAIPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIINFGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGFNF 527
            MSLRP+ARTEVRRNRYKVAVDA+EGRRRREDNM+EIRK+KREESLLKKRREGLQA QFP    A  VEKKL  ES+P +VAGVWS+DSN+QLEATT FRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED+PQLQFEAAWALTNIASGTSENTKVVIDHGA+PIFVKLL SPSDDVREQAVWALGNVAGDSPRCRDLVL +GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF+QT+PALPALQRL+HS+DEEVLTDACWALSYLSDGTNDKIQAVI+AGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQ II  GALPCLL+LLTHNHKKSIKKEACWTISNITAGNKEQIQAVI AGL  PLVNLLQ AEFDIKKEAAWAISNATSGG+H+QIK+LV Q CIKPLCDLLVCPDPRI+TVCLEGLENILKVGE EKNLGNSG+VNYYAQLID+AEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLP+GDG Q GFN GG D  +PSGGFNF
Sbjct:    1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQFPSNIHASTVEKKL--ESLPSLVAGVWSNDSNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLCNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQTKPALPALQRLIHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQSIIEHGALPCLLNLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVGQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEVEKNLGNSGDVNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGPQPGFNFGGNDVQVPSGGFNF 528
[Close]
BLAST of XM_017362788.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7SY66 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 971.074 bits (2509), Expect = 0.000e+0
Identity = 471/530 (88.87%), Postives = 500/530 (94.34%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFP---QAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAIPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIINFGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGFNF 527
            MSLRP+ARTEVRRNRYKVAVDA+EGRRRREDNM+EIRK+KREESL KKRREGLQA QFP    A  VEKKL  ES+P MVAGVWSD+S++QLEATT FRKLLSIERSPPIEEVIQSGVVPRFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGA+PIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVL  GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF+Q +PALPAL+RLVHS+DEEVLTDACWALSYLSDGTNDKIQAVI+AGVC RLVELLLHPSPSVLIPALRTVGNIVTGDD+QTQ IIN GALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVI AG+  PLV+LLQ AEFDIKKEAAWAISNATSGG+H+QIK+LV+Q CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK LGNSG+VNYYAQLID+AEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLP+GDG+Q GF  GG D ++PSGGFNF
Sbjct:    1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPAAAHASTVEKKL--ESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGVIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKTLGNSGDVNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGSQPGFQFGGNDVSVPSGGFNF 528
[Close]
BLAST of XM_017362788.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835MT66 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9677962.1}))

HSP 1 Score: 970.689 bits (2508), Expect = 0.000e+0
Identity = 466/529 (88.09%), Postives = 499/529 (94.33%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFPQAPVVEKKLQ--LESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAIPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIINFGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGFNF 527
            MSLRP++RT+VRRNRYKVAVDADEGRRRREDNM+EIRKNKREESL KKRREGL A QFP A +    ++  LES+P MVAGVWSDDSN+QLEATT FRKLLSIERSPPIEEVIQ+GVVPRFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGA+PIFVKLLGSPSDDVREQAVWALGNVAGDSP+CRDLVL+ GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ RPALPAL+RLVHS DEEVLTDACWALSYLSDGTNDKIQAVI+AGVC RLVELLLHPSPSVL+PALRTVGNIVTGDD+QTQCIIN GALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQI+AVI AGL GPL+NLLQNAEFDIKKEAAWA+SNATSGG+H+QIKFLV+Q CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVN+YAQ+ID+AEGLEKIENLQSHDNNEIYEKAVKILETYWLEE+DE LP+GDG Q GF+ G  +  +PSGGFNF
Sbjct:    1 MSLRPSSRTDVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLLAQQFPAAVISSSNMENKLESLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCLRLVELLLHPSPSVLVPALRTVGNIVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIKAVIEAGLIGPLINLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNFYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDEALPSGDGAQQGFHFGENNVQVPSGGFNF 529
[Close]
BLAST of XM_017362788.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5L5H4 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 967.607 bits (2500), Expect = 0.000e+0
Identity = 463/529 (87.52%), Postives = 495/529 (93.57%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFPQAPVVEKKL--QLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAIPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIINFGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGFNF 527
            MSLRP+ARTEVRRNRYKVAVDADEGRRRREDNM+EIRKNKREESLLKKRREGLQA QFP AP+    +  +LES+P MVAGVWSDD N+QLEATT FRKLLSIERSPPIEEVIQ+GVV RFVEFL RED+PQLQFEAAWALTNIASGTSENTKVVIDHGA+PIFVKLLGSPSDDVREQAVWALGNVAGDSP+CRDLVL  GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ RPALPAL+RLVHS DEE+LTD+CWALSYLSDGT+D+IQAVI+AGVC RLVEL LHPSPSVL+PALRTVGNIVTGDD+QTQCIIN GALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVI AGL GPL+NLLQNAEFDIKKEAAWA+SNATSGG+H+QIKFLV+Q CIKPLCDLLVCPDPRIVTV LEGLENILK+GE EKNLGNSG+ N+YAQ+ID+AEGLEKIENLQSHDNNEIYEKAVKILETYWLEE+DETLP+GDG Q GF  GG D  +PSGGFNF
Sbjct:    1 MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQAQQFPAAPLSTSNVVKKLESLPSMVAGVWSDDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVSRFVEFLAREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPKCRDLVLRHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVHSTDEEILTDSCWALSYLSDGTDDQIQAVIEAGVCPRLVELFLHPSPSVLVPALRTVGNIVTGDDIQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIGPLINLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVSLEGLENILKIGEVEKNLGNSGDANFYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETLPSGDGAQQGFQFGGNDVQVPSGGFNF 529
[Close]
BLAST of XM_017362788.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836Y1V2 ((Importin {ECO:0000313|EMBL:KAG5235975.1}))

HSP 1 Score: 967.607 bits (2500), Expect = 0.000e+0
Identity = 463/529 (87.52%), Postives = 496/529 (93.76%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFPQAPVVEKKL--QLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAIPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIINFGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGFNF 527
            MSLRP+ARTEVRRNRYKVAVDADEGRRRREDNM+EIRKNKREESLLKKRREGLQA QFP AP+    +  +LES+P MVAGVWSDD N+QLEATT FRKLLSIERSPPIEEVIQ+GVV RFVEFL RED+PQLQFEAAWALTNIASGTSENTKVVIDHGA+PIFVKLLGSPSDDVREQAVWALGNVAGDSP+CRDLVL  GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ RPALPAL+RLVHS DEE+LTD+CWALSYLSDGT+D+IQAVI+AGVC RLVEL LHPSPSVL+PALRTVGNIVTGDD+QTQCIIN GALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVI AGL GPL+NLLQNAEFDIKKEAAWA+SNATSGG+H+QIKFLV+Q CIKPLCDLLVCPDPRIVTV LEGLENILK+GEAEKNLGNSG+ N+YAQ+ID+A+GLEKIENLQSHDNNEIYEKAVKILETYWLEE+DETLP+GDG Q GF  GG D  +PSGGFNF
Sbjct:    1 MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQAQQFPAAPLSTSNVVKKLESLPSMVAGVWSDDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVSRFVEFLAREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPKCRDLVLRHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVHSTDEEILTDSCWALSYLSDGTDDQIQAVIEAGVCPRLVELFLHPSPSVLVPALRTVGNIVTGDDIQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIGPLINLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVSLEGLENILKIGEAEKNLGNSGDANFYAQMIDDAKGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETLPSGDGAQQGFQFGGNDVQVPSGGFNF 529
[Close]
BLAST of XM_017362788.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834X4S6 ((Importin subunit alpha-2 {ECO:0000313|EMBL:KAF7837760.1}))

HSP 1 Score: 962.985 bits (2488), Expect = 0.000e+0
Identity = 469/532 (88.16%), Postives = 497/532 (93.42%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFPQAPV----VEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAIPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIINFGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGFNFG 528
            MSLRPNA+ EVRRNRYKVAVDADEGRRRREDNM+EIRK+KREESL KKRREGLQA Q   AP+    VEKKL  ES+P MVAGVWSDDS++QLEATT FRKLLSIERSPPIEEVIQSGVVPRFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGA+PIFVKLL SPSDDVREQAVWALGNVAGDSPRCRDLVL+ GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ +PALPAL+RLV SNDEEVLTDACWALSYLSDGTNDKIQAVI+AGVC RLV+LLLHPSPSVLIPALRTVGNIVTGDDVQTQCIIN GALPCLLSLLTHNHKKSIKKEACWTISNITAGN+EQIQAVI AGL  PLV+LLQNAEFDIKKEAAWAISNATSGG+H+QIK+LV+Q CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK+LGN+GEVN YAQ+ID+AEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDET+P GDG Q  FN GG +  +PSGGF FG
Sbjct:    1 MSLRPNAKAEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFAAPIQTSTVEKKL--ESLPSMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVKPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDDVQTQCIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLITPLVSLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVDQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGEVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETVPIGDGAQQTFNFGGNENTVPSGGFKFG 530
[Close]
BLAST of XM_017362788.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067JV78 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})

HSP 1 Score: 962.6 bits (2487), Expect = 0.000e+0
Identity = 464/530 (87.55%), Postives = 498/530 (93.96%), Query Frame = 0
 
Query:    1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFPQ---APVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAIPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIINFGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGFNF 527
            MSLRPNARTE RRNRYKVAVDADEGRRRREDNM+EIRKNKREESL KKRREGLQA QFP    +   EKKL  ES+P MVAGVWSDD+N+QLEATT FRKLLSIERSPPIEEVIQSGVVPRF+EFL+RED+PQLQFEAAWALTNIASGTSE+T+VVIDHGA+PIFVKLL SPSDDVREQAVWALGNVAGDSP+CRDLVL+ GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ RPA+PAL+RLVHS DEEVLTDACWALSYLSDGTNDKIQAVI+AGVC RLVELLLHPSPSVL+PALRTVGNIVTGDD+QTQC+I++GALP LLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVI AGL  PLVNLLQNAEFDIKKEAAWAISNATSGG+++QIK+LV+Q C+KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSG+VN YAQLID+AEGLEKIENLQSHDN EIYEKAVK+LETYWLEE+DETLPTGDG Q GF+ GG D ++PSGGFNF
Sbjct:    1 MSLRPNARTEARRNRYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQAQQFPATALSSAAEKKL--ESLPSMVAGVWSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFIEFLVREDFPQLQFEAAWALTNIASGTSEHTRVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPAIPALERLVHSADEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLVPALRTVGNIVTGDDIQTQCVISYGALPYLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTNEQIKYLVSQGCVKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGDVNMYAQLIDDAEGLEKIENLQSHDNTEIYEKAVKVLETYWLEEDDETLPTGDGFQQGFHFGGKDPSVPSGGFNF 528
Match NameStatsDescription
A0A5J5AC24E-Value: 0.000e+0, PID: 90.94Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
A0A4S4EIK9E-Value: 0.000e+0, PID: 89.64Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
A0A5B7C9T2E-Value: 0.000e+0, PID: 90.00Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
A0A7J7GPX7E-Value: 0.000e+0, PID: 89.62Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
D7SY66E-Value: 0.000e+0, PID: 88.87Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
A0A835MT66E-Value: 0.000e+0, PID: 88.09(Uncharacterized protein {ECO:0000313|EMBL:KAF9677... [more]
A0A5N5L5H4E-Value: 0.000e+0, PID: 87.52Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
A0A836Y1V2E-Value: 0.000e+0, PID: 87.52(Importin {ECO:0000313|EMBL:KAG5235975.1})[more]
A0A834X4S6E-Value: 0.000e+0, PID: 88.16(Importin subunit alpha-2 {ECO:0000313|EMBL:KAF783... [more]
A0A067JV78E-Value: 0.000e+0, PID: 87.55Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.