Resource Type:
Polypeptide
Name:
XM_017363111.1
Identifier:
XM_017363111.1-protein
Sequence:
MASKNKRKKAKNKNQNNLQGESKPHCLPPKQDHIIKTETEKLFERVKAKV
EALKAAISTNAGSIPFHDTSASTPEKAESLEKKIENGGPDDLHDLPNVSE
RAEVTADTDPLLVSDKVQNLANIKVPQPVSNSGSDPKILKRENDDNTGLK
PKKKMKKKASNIKIQTLLKQSDDSSPIVGLGPASIDPVKESSAQELPECE
VPQPVSNSGSNPRIFSSKNEGSTVLKPKKVTMKKKKKKTTNIKIETLLEN
SSNISPIVGCDPSSFNPVKESLDQDLPDCEVPQPVSNSGSIPKILNCENN
TTNIKMQTLLEQSANTSTVVGCGPASIDPVKESLVQDLPECEVPHPMSNS
GSNPKILISENDNSTALKPKKKTTDVNIQTRLEQSANTSPIVGFGPASFD
PVTESLDQELPECKVPQPVSTSGCDPRISKCENDDSTVLKPNQKTTDIKI
QKNIEQSATASPVVAFGRGIFDPVEESLVQELPECEVPQPVSTSGCDPRI
SKCENDDSTVLKPNQKTTDNKIQTNIEQSATTSPVVAFGRGIFDPVEESV
VQELPECEVPQPVSDSGSDPKILSCENDNSSVLKPKKKTTDTEIQTYPEH
SANTSSIVGFGPDRFDPVKESLVQELPECENIKLESLRKNRDPVSKKDLE
KSIDSIPEEVKVNIVAHKAAENMNAPNIPFYDMSASTPDKAYPLEKIIEK
EEWDCLGDLLNIPRGAKLSPEAYPSFVRNRVHKLEKIQDEHEKRTVASVL
QYITHLIKYKDKHLSGCYNKFVKDHKFPSIIEEKFQAMFSESSSEALPPA
KRELLVNYVLVLSLFVDGYKSNAKDITKDLKIKTETRPREGGFRATLFVF
GLMLLDNIGFVANMASLVLYFMNVMHFSISGSANTLTNYLGTAFLLTLVG
GLISDSYMSRLNTCLLFGGIELLGYLLLIIQSHYPELQPEVCGKYSCVDG
TKALLFYASICFAALGGGGLRGSAPALGADQFDPKQTKEIASFFNWFLFS
ITVGASIGVTVVVWVSTNKGWDNGFIISMVCSFIGFCSVAVGKPYYRARV
PGESVLLRVLEVLVVTIKNLKVELPQNSRDLYEIDDMGRERIRHSYQFRV
LDKAAILPEGTTPKKWKVCTVTQVEEVKILTRMMPILLSTTLMNTCLAQL
QTFSIQQGSLMNTKLGNFNVPAASIPIIPLFFMSLLIPLYEILLVPLLRK
LTGHPNGITHLQRVGVGLVLSAICMTLAGIIELKRKNAFVDHNTRISLFW
LSFHFAVFGIADMFTLVGLLEFFYSEAPPRMRSLSTSFSFLSLSIGYYLS
SVFVEIINSVTGKLSSNNVGWLEDMDMNKNHLERFYWFLAVISVLNFGNY
IFWANWYKYKKDVPVDRQKLMDQSFSDASMRFTAKIDDLIPPSNKI
Sequence Length:
1396
Sequence Checksum:
4ebb1399f3907fbba8f467493b92b0f1
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017363111.1, derives from mRNA, XM_017363111.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017363111.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017363111.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6QZW7 ((Putative proton-dependent oligopeptide transporter family, major facilitator superfamily {ECO:0000313|EMBL:PRQ39696.1}))
HSP 1 Score: 797.734 bits (2059), Expect = 0.000e+0
Identity = 386/541 (71.35%), Postives = 451/541 (83.36%), Query Frame = 0
Match: A0A2P6QZW7 ((Putative proton-dependent oligopeptide transporter family, major facilitator superfamily {ECO:0000313|EMBL:PRQ39696.1}))
HSP 1 Score: 797.734 bits (2059), Expect = 0.000e+0
Identity = 386/541 (71.35%), Postives = 451/541 (83.36%), Query Frame = 0
Query: 837 RPREGGFRATLFVFGLMLLDNIGFVANMASLVLYFMNVMHFSISGSANTLTNYLGTAFLLTLVGGLISDSYMSRLNTCLLFGGIELLGYLLLIIQSHYPELQPEVCGKYSCVDGTKALLFYASICFAALGGGGLRGSAPALGADQFD---PKQTKEIASFFNWFLFSITVGASIGVTVVVWVSTNKGWDNGFIISMVCSFIGFCSVAVGKPYYRARVPGESVLLRVLEVLVVTIKNLKVELPQNSRDLYEIDDMGRERIRHSYQFRVLDKAAILPEGT---TPKKWKVCTVTQVEEVKILTRMMPILLSTTLMNTCLAQLQTFSIQQGSLMNTKLGNFNVPAASIPIIPLFFMSLLIPLYEILLVPLLRKLTGHPNGITHLQRVGVGLVLSAICMTLAGIIELKRKNAFVDHNTRISLFWLSFHFAVFGIADMFTLVGLLEFFYSEAPPRMRSLSTSFSFLSLSIGYYLSSVFVEIINSVTGKLSSNNVGWLEDMDMNKNHLERFYWFLAVISVLNFGNYIFWANWYKYKKDVPVDRQKLM 1371
+ REGGF+A F+F +M LDNIGFVANMASLVLYFM V+HF ISGSA T TNYLG+AFLLTLVGG ISD+YM+RLNT LLFG ELLGYLLLIIQSHY +LQP CG+ +CV GTKALLFYASI ALGGGG+RG+ PALGADQF+ P++ K IASFFNW L SITVGA +GVT VV+VST GWD F+IS+ C+ G VA+GKPYYR RV GES LLRVL+VLV ++KN +V++PQ+ +L+E RERI H+ QFR+LDKAAILP G KWKVCTVTQVEEVKILTRMMPILLSTTLMNTCLAQLQT S+QQG+LM+T++G+FNVPAA+IP+IPL FMS+LIP YE VPLLRK TGHPNGITHLQRVGVGLVLSAI MT+AG +E+KRK+ F+ +N +ISLFWLSFH+A+FGIADMFTLVGL+EFFY EAP MRSLSTSFS+LSLSIGYYLSS FVE+INS+TGK + + +GWLE +DMNKNH+E FYWFLA++SVLNF NY+FWANWY YK DV VD + L+
Sbjct: 42 QEREGGFKANYFIFAMMFLDNIGFVANMASLVLYFMLVIHFDISGSATTTTNYLGSAFLLTLVGGFISDAYMNRLNTTLLFGVAELLGYLLLIIQSHYTKLQPLPCGESTCVHGTKALLFYASISLVALGGGGIRGAIPALGADQFNYKKPEERKHIASFFNWLLLSITVGAVVGVTFVVYVSTTVGWDIAFMISLSCAGAGLVIVALGKPYYRVRVAGESPLLRVLQVLVASVKNWRVQVPQSPDELHE-STKKRERITHTDQFRLLDKAAILPNGVDAAIASKWKVCTVTQVEEVKILTRMMPILLSTTLMNTCLAQLQTLSVQQGTLMDTRIGSFNVPAATIPVIPLLFMSVLIPTYEFTFVPLLRKFTGHPNGITHLQRVGVGLVLSAISMTIAGFVEVKRKHEFIQNNHKISLFWLSFHYAIFGIADMFTLVGLMEFFYREAPAGMRSLSTSFSWLSLSIGYYLSSAFVELINSITGKYTDSKLGWLEGLDMNKNHIELFYWFLAILSVLNFANYLFWANWYTYKNDVTVDEEMLI 581
BLAST of XM_017363111.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DJ46 ((Uncharacterized protein {ECO:0000313|EMBL:THG02872.1}))
HSP 1 Score: 788.875 bits (2036), Expect = 0.000e+0
Identity = 405/571 (70.93%), Postives = 470/571 (82.31%), Query Frame = 0
Match: A0A4S4DJ46 ((Uncharacterized protein {ECO:0000313|EMBL:THG02872.1}))
HSP 1 Score: 788.875 bits (2036), Expect = 0.000e+0
Identity = 405/571 (70.93%), Postives = 470/571 (82.31%), Query Frame = 0
Query: 822 NAKDITKDLKIKTETRPREGGFRATLFVFGLMLLDNIGFVANMASLVLYFMNVMHFSISGSANTLTNYLGTAFLLTLVGGLISDSYMSRLNTCLLFGGIELLGYLLLIIQSHYPELQPEVCGKYSCVDGTKALLFYASICFAALGGGGLRGSAPALGADQFD---PKQTKEIASFFNWFLFSITVGASIGVTVVVWVSTNKGWDNGFIISMVCSFIGFCSVAVGKPYYRARVPGESVLLRVLEVLVVTIKNLKVELPQNSRDLYEIDD----MGRERIRHSYQFRVLDKAAILPEGTT-PKKWKVCTVTQVEEVKILTRMMPILLSTTLMNTCLAQLQTFSIQQGSLMNTKLGNFNVPAASIPIIPLFFMSLLIPLYEILLVPLLRKLTGHPNGITHLQRVGVGLVLSAICMTLAGIIELKRKNAFVDHNTRISLFWLSFHFAVFGIADMFTLVGLLEFFYSEAPPRMRSLSTSFSFLSLSIGYYLSSVFVEIINSVTGKLSSNNVGWLEDMDMNKNHLERFYWFLAVISVLNFGNYIFWANWYKYKKDVPVDRQKLMDQSFSDASMRFTA 1384
N + +D+ + PR+GGF+ T+F+F +M LDNIGFVANMAS+VLYF+ V+HF +SGSA T TNYLGT FLLTLVGG ISD+YM+RLNTCLLFG I+LLGYLLLI+QSH+ +LQPE CGK SCV GTK LLFYASI ALGGGG+RGS PALGADQFD K++K IA+FFNWFL SITVGAS+GVTVVVWVSTN GWD GFIISM+C+F+G C +++GK +YR R+PGES L VL+VLVVTI+N V LP+NSRDLYE RE I H+ QFR+LDKAA+LPEG PKKW+VCTVTQVEEVKILTRMMPILLST LMNTCLAQLQTFS+QQG+LMNTKLG F+VPAASIP+IPL FMSLLIP+YE VP++RK TGHPNGITHLQRVGVGLVLS I M +AG IE+KRKN + HN RISLFWLSFH+AVFGIADMFT VGLLEFFYSEAP RSLSTSFSFLSLSIGYYLSS FV +IN V+ KL S+ GWLE +DMNKN +E FYWFLA++S+LNF NY+FWA W+KYKKDVP+D QKL+ + D S+ +A
Sbjct: 25 NDEGGVEDIVYQPLKNPRQGGFKGTIFIFAMMGLDNIGFVANMASMVLYFLYVIHFDLSGSATTTTNYLGTVFLLTLVGGFISDTYMNRLNTCLLFGTIQLLGYLLLIVQSHFHKLQPEFCGKSSCVHGTKGLLFYASIFLVALGGGGIRGSVPALGADQFDQNEAKESKYIATFFNWFLLSITVGASVGVTVVVWVSTNVGWDKGFIISMICAFLGLCFISLGKAFYRIRMPGESALSSVLQVLVVTIRNWAVRLPENSRDLYETRGPESASYRECIPHTNQFRLLDKAAVLPEGIIKPKKWRVCTVTQVEEVKILTRMMPILLSTILMNTCLAQLQTFSVQQGTLMNTKLGGFDVPAASIPVIPLVFMSLLIPVYEFAFVPIVRKFTGHPNGITHLQRVGVGLVLSVISMGVAGFIEVKRKNEIIHHNHRISLFWLSFHYAVFGIADMFTFVGLLEFFYSEAPAGKRSLSTSFSFLSLSIGYYLSSAFVGLINLVSAKLCSSKRGWLEGLDMNKNRVELFYWFLAILSILNFVNYVFWAKWFKYKKDVPIDGQKLLIRPHPDESVSVSA 595
BLAST of XM_017363111.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4E2Z5 ((Uncharacterized protein {ECO:0000313|EMBL:THG10251.1}))
HSP 1 Score: 785.023 bits (2026), Expect = 0.000e+0
Identity = 402/562 (71.53%), Postives = 465/562 (82.74%), Query Frame = 0
Match: A0A4S4E2Z5 ((Uncharacterized protein {ECO:0000313|EMBL:THG10251.1}))
HSP 1 Score: 785.023 bits (2026), Expect = 0.000e+0
Identity = 402/562 (71.53%), Postives = 465/562 (82.74%), Query Frame = 0
Query: 827 TKDLKIKTETRPREGGFRATLFVFGLMLLDNIGFVANMASLVLYFMNVMHFSISGSANTLTNYLGTAFLLTLVGGLISDSYMSRLNTCLLFGGIELLGYLLLIIQSHYPELQPEVCGKYSCVDGTKALLFYASICFAALGGGGLRGSAPALGADQFD---PKQTKEIASFFNWFLFSITVGASIGVTVVVWVSTNKGWDNGFIISMVCSFIGFCSVAVGKPYYRARVPGESVLLRVLEVLVVTIKNLKVELPQNSRDLYEIDD----MGRERIRHSYQFRVLDKAAILPEGTT-PKKWKVCTVTQVEEVKILTRMMPILLSTTLMNTCLAQLQTFSIQQGSLMNTKLGNFNVPAASIPIIPLFFMSLLIPLYEILLVPLLRKLTGHPNGITHLQRVGVGLVLSAICMTLAGIIELKRKNAFVDHNTRISLFWLSFHFAVFGIADMFTLVGLLEFFYSEAPPRMRSLSTSFSFLSLSIGYYLSSVFVEIINSVTGKLSSNNVGWLEDMDMNKNHLERFYWFLAVISVLNFGNYIFWANWYKYKKDVPVDRQKLMDQSFSDASM 1380
+D+ + PR+GGF+ T+F+F +M LDNIGFVANMAS+VLYF+ V+HF +SGSA T TNYLGT FLLTLVGG ISD+YM+RLNTCLLFG I+LLGYLLLI+QSH+ +LQPE CGK SCV GTK LLFYASI ALGGGG+RGS PALGADQFD K++K IA+FFNWFL SITVGAS+GVTVVVWVSTN GWD GFIISM+C+F+G C +++GKP+YR R+PGES L VL+VLVVTI+N V LP+NSRDLYE RE I H+ QFR+LDKAA+LPEG PKKW+VCTVTQVEEVKILTRMMPILLST LM TCLAQLQTFS+QQG+LMNTKLG F+VPAASIP+IPL FMSLLIP+YE P++RK TGHPNGITHLQRVGVGLVLS I M +AG IE+KRKN + HN RISLFWLSFH+AVFGIADMFT VGLLEFFYSEAP RSLSTSFSFLSLSIGYYLSS FV +IN V+ KLSS+ GWLE +DMNKN +E FYWFLA++S+LNF NY+FWA W+KY KDVP+D QKL+ + D S+
Sbjct: 29 VEDIVYQPLKNPRQGGFKGTIFIFAMMGLDNIGFVANMASMVLYFLYVIHFDLSGSATTTTNYLGTVFLLTLVGGFISDTYMNRLNTCLLFGTIQLLGYLLLIVQSHFHKLQPEFCGKSSCVHGTKGLLFYASIFLVALGGGGIRGSVPALGADQFDQNEAKESKYIATFFNWFLLSITVGASVGVTVVVWVSTNVGWDKGFIISMICAFLGLCFISLGKPFYRIRMPGESALSSVLQVLVVTIRNWAVRLPENSRDLYETRGPESASYRECIPHTNQFRLLDKAAVLPEGIIKPKKWRVCTVTQVEEVKILTRMMPILLSTILMYTCLAQLQTFSVQQGTLMNTKLGGFDVPAASIPVIPLVFMSLLIPVYEFAFFPIVRKFTGHPNGITHLQRVGVGLVLSVISMGVAGFIEVKRKNEIIHHNHRISLFWLSFHYAVFGIADMFTFVGLLEFFYSEAPAGKRSLSTSFSFLSLSIGYYLSSAFVGLINLVSAKLSSSKRGWLEGLDMNKNRVELFYWFLAILSILNFVNYVFWAKWFKYNKDVPIDGQKLLIRPHPDESV 590
BLAST of XM_017363111.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540KA25 ((Uncharacterized protein {ECO:0000313|EMBL:TQD71063.1}))
HSP 1 Score: 784.637 bits (2025), Expect = 0.000e+0
Identity = 388/556 (69.78%), Postives = 457/556 (82.19%), Query Frame = 0
Match: A0A540KA25 ((Uncharacterized protein {ECO:0000313|EMBL:TQD71063.1}))
HSP 1 Score: 784.637 bits (2025), Expect = 0.000e+0
Identity = 388/556 (69.78%), Postives = 457/556 (82.19%), Query Frame = 0
Query: 827 TKDLKIKTETRPREGGFRATLFVFGLMLLDNIGFVANMASLVLYFMNVMHFSISGSANTLTNYLGTAFLLTLVGGLISDSYMSRLNTCLLFGGIELLGYLLLIIQSHYPELQPEVCGKYSCVDGTKALLFYASICFAALGGGGLRGSAPALGADQFD---PKQTKEIASFFNWFLFSITVGASIGVTVVVWVSTNKGWDNGFIISMVCSFIGFCSVAVGKPYYRARVPGESVLLRVLEVLVVTIKNLKVELPQNSRDLYEI---DDMGR-ERIRHSYQFRVLDKAAILPEGT-TPKKWKVCTVTQVEEVKILTRMMPILLSTTLMNTCLAQLQTFSIQQGSLMNTKLGNFNVPAASIPIIPLFFMSLLIPLYEILLVPLLRKLTGHPNGITHLQRVGVGLVLSAICMTLAGIIELKRKNAFVDHNTRISLFWLSFHFAVFGIADMFTLVGLLEFFYSEAPPRMRSLSTSFSFLSLSIGYYLSSVFVEIINSVTGKLSSNNVGWLEDMDMNKNHLERFYWFLAVISVLNFGNYIFWANWYKYKKDVPVDRQKLMDQS 1374
KDL + R + GGF+A F+F +M LDNIGFVANMASLVLYFM V+HF +SGSA T TNYLGT FLLT+VGG ISD+YM+RLNT LLFG IELLGY+LLIIQ+H LQP C + +CV GTKALLFYASI F ALGGGG+RG+ PALGADQFD PK+ + IASFFNWFL SITVGA IGVT VV+VS+N GWD GFIIS+ C+ +G VA+GKPYYR RVPGES L+RVLEVLVV++KN KVE+PQNS LYEI D + E I HS QFR+LDKAA+LP G +KWKVCTVTQVEEVK+L RMMPILLST LMNTCLAQLQT SIQQG+LMNT++G+F+VP+A+IP+IPL FM+LLIP+YE VPLLRK+TGHPNGITHLQRVGVGLVLSAI M +AG++E+KRK+ V HN +ISLFWLSFH+A+FGIADMFTLVGLLEFFY EAP MRSLSTSFS+LSLSIGYYLS+VFVE+IN++T K + N +GWLE DMNK+H + FYWFLA++SV+NFG Y++ A WYKYK DV VD + ++ S
Sbjct: 7 AKDLAYEPLKR-KAGGFKANYFIFAMMFLDNIGFVANMASLVLYFMFVIHFDLSGSATTTTNYLGTTFLLTIVGGFISDAYMNRLNTTLLFGVIELLGYMLLIIQAHDKNLQPLPCLESTCVHGTKALLFYASISFVALGGGGIRGAIPALGADQFDSKDPKEHRHIASFFNWFLLSITVGAVIGVTFVVYVSSNVGWDIGFIISLSCAAVGLLFVALGKPYYRVRVPGESPLIRVLEVLVVSVKNWKVEVPQNSDILYEIRARDSASKAELIPHSNQFRLLDKAAVLPNGANAARKWKVCTVTQVEEVKVLARMMPILLSTILMNTCLAQLQTLSIQQGTLMNTRIGDFDVPSATIPVIPLAFMTLLIPVYEFAFVPLLRKITGHPNGITHLQRVGVGLVLSAISMAIAGLVEVKRKHEMVHHNHKISLFWLSFHYAIFGIADMFTLVGLLEFFYKEAPTGMRSLSTSFSWLSLSIGYYLSTVFVELINTITSKFTKNKMGWLEGRDMNKSHADYFYWFLAILSVVNFGIYVWCAQWYKYKSDVMVDEEMMLKAS 561
BLAST of XM_017363111.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5FB10 ((Protein NRT1/ PTR FAMILY 4.5-like {ECO:0000313|EMBL:KAB2599131.1}) (Fragment))
HSP 1 Score: 783.097 bits (2021), Expect = 0.000e+0
Identity = 388/556 (69.78%), Postives = 456/556 (82.01%), Query Frame = 0
Match: A0A5N5FB10 ((Protein NRT1/ PTR FAMILY 4.5-like {ECO:0000313|EMBL:KAB2599131.1}) (Fragment))
HSP 1 Score: 783.097 bits (2021), Expect = 0.000e+0
Identity = 388/556 (69.78%), Postives = 456/556 (82.01%), Query Frame = 0
Query: 827 TKDLKIKTETRPREGGFRATLFVFGLMLLDNIGFVANMASLVLYFMNVMHFSISGSANTLTNYLGTAFLLTLVGGLISDSYMSRLNTCLLFGGIELLGYLLLIIQSHYPELQPEVCGKYSCVDGTKALLFYASICFAALGGGGLRGSAPALGADQFD---PKQTKEIASFFNWFLFSITVGASIGVTVVVWVSTNKGWDNGFIISMVCSFIGFCSVAVGKPYYRARVPGESVLLRVLEVLVVTIKNLKVELPQNSRDLYEI---DDMGR-ERIRHSYQFRVLDKAAILPEGT-TPKKWKVCTVTQVEEVKILTRMMPILLSTTLMNTCLAQLQTFSIQQGSLMNTKLGNFNVPAASIPIIPLFFMSLLIPLYEILLVPLLRKLTGHPNGITHLQRVGVGLVLSAICMTLAGIIELKRKNAFVDHNTRISLFWLSFHFAVFGIADMFTLVGLLEFFYSEAPPRMRSLSTSFSFLSLSIGYYLSSVFVEIINSVTGKLSSNNVGWLEDMDMNKNHLERFYWFLAVISVLNFGNYIFWANWYKYKKDVPVDRQKLMDQS 1374
KDL + R ++GGF+A F+F +M LDNIGFVANMASLVLYFM V+HF +SGSA T TNYLGT FLLT+VGG ISD+YM+RLNT LLFG IELLGY+LLIIQ+H LQP C + +CV GTKALLFYASI ALGGGG+RG+ PALGADQFD P + K IASFFNWFL SITVGA IGVT VV+VS+N GWD GFIIS+ C+ +G VA+GKPYYR RVPGES L+RVLEVLVV++KN KVE+PQNS LYEI D + E I HS QFR+LDKAA+LP G +KWKVCTVTQVEEVK+L RMMPILLST LMNTCLAQLQT SIQQG+LMNT++G+F+VP+A+IP+IPL FM+LLIP+YE VPLLRK+TGHPNGITHLQRVGVGLVLSAI MT+AGI+E+KRK+ V HN +ISLFWLSFH+A+FGIADMFTLVGL+EFFY EAP MRSLSTSFS+LSLSIGYY+S+VFVE+INS+T K + N +GWLE DMNK+H + FYWFLA++SV+NFG Y++ A WYKYK DV V + L+ S
Sbjct: 6 AKDLDYEPSKR-KQGGFKANYFIFAMMFLDNIGFVANMASLVLYFMFVIHFDLSGSATTTTNYLGTTFLLTIVGGFISDAYMNRLNTTLLFGVIELLGYMLLIIQAHDKNLQPLPCLESTCVHGTKALLFYASISLVALGGGGIRGAIPALGADQFDSKDPNEHKHIASFFNWFLLSITVGAVIGVTFVVYVSSNVGWDIGFIISLSCAAVGLIFVALGKPYYRVRVPGESPLIRVLEVLVVSVKNWKVEVPQNSDKLYEIHARDSASKAELIPHSNQFRLLDKAAVLPNGANAARKWKVCTVTQVEEVKVLARMMPILLSTILMNTCLAQLQTLSIQQGTLMNTRIGDFDVPSATIPVIPLVFMTLLIPVYEFAFVPLLRKITGHPNGITHLQRVGVGLVLSAISMTIAGIVEVKRKHEMVHHNHKISLFWLSFHYAIFGIADMFTLVGLMEFFYKEAPAGMRSLSTSFSWLSLSIGYYVSTVFVELINSITSKFTKNKMGWLEGRDMNKSHADYFYWFLAILSVVNFGIYVWCAQWYKYKNDVTVYEEMLLKAS 560
BLAST of XM_017363111.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RGG7 (BZIP domain-containing protein {ECO:0000259|PROSITE:PS50217})
HSP 1 Score: 781.556 bits (2017), Expect = 0.000e+0
Identity = 393/563 (69.80%), Postives = 465/563 (82.59%), Query Frame = 0
Match: A0A5N6RGG7 (BZIP domain-containing protein {ECO:0000259|PROSITE:PS50217})
HSP 1 Score: 781.556 bits (2017), Expect = 0.000e+0
Identity = 393/563 (69.80%), Postives = 465/563 (82.59%), Query Frame = 0
Query: 838 PREGGFRATLFVFGLMLLDNIGFVANMASLVLYFMNVMHFSISGSANTLTNYLGTAFLLTLVGGLISDSYMSRLNTCLLFGGIELLGYLLLIIQSHYPELQPEVCGKYSCVDGTKALLFYASICFAALGGGGLRGSAPALGADQFD---PKQTKEIASFFNWFLFSITVGASIGVTVVVWVSTNKGWDNGFIISMVCSFIGFCSVAVGKPYYRARVPGESVLLRVLEVLVVTIKNLKVELPQNSRDLYEIDD----MGRERIRHSYQFRVLDKAAILPEGTTPKKWKVCTVTQVEEVKILTRMMPILLSTTLMNTCLAQLQTFSIQQGSLMNTKLGNFNVPAASIPIIPLFFMSLLIPLYEILLVPLLRKLTGHPNGITHLQRVGVGLVLSAICMTLAGIIELKRKNAFVDHNTRISLFWLSFHFAVFGIADMFTLVGLLEFFYSEAPPRMRSLSTSFSFLSLSIGYYLSSVFVEIINSVTGKLSSNNVGWLEDMDMNKNHLERFYWFLAVISVLNFGNYIFWANWYKYKKDVPVDRQKLM--------DQSFSDASMRFTAK 1385
PR+GGFRAT F+F +M LDNIGFVANM S+VLYF+ +MHF +SGSA T TN+LGTAFLLT+VGG ISDSYM+ LNTC+LFG I+LLGY+LLIIQSHY +LQPE CG+ +CV GTKA LFYASI ALGGGG+RGS P LGADQFD P++ K IA+FFNWFL SIT+GASIGVT VV+VS+++GWD GF ISM C+F+G +A+GKP+YR RVPGES LLRVL+VLVVT+KN KV+LP NS +LYE+ D E I H+ QFR+LDKAA+LPEG +KW VC+VTQVEEVKILTRMMPIL+ST MNTCLAQLQTFS+QQG++MNT +G NVP ASIP+IPL FMSLLIP+YE VP+LRK+TGHP GITHLQRVGVGLVLSAI M +AGIIE+KRK+ F+ HN RISLFWL+FH+A+FGIADMFT VGLLEFFY EAPP MRSLSTSFSFLSLS+G++LS+VFVE+IN VTGKL + GWL +DMNKNHLERFYWFLAV+S+LNF NY+FWA WYKYK DVP+D + L+ DQS S +++ F K
Sbjct: 700 PRQGGFRATYFIFVMMGLDNIGFVANMVSMVLYFLFIMHFDLSGSATTTTNFLGTAFLLTVVGGFISDSYMTHLNTCILFGSIQLLGYVLLIIQSHYHKLQPEPCGESTCVHGTKAFLFYASIWLVALGGGGIRGSVPTLGADQFDDKDPEERKLIATFFNWFLLSITIGASIGVTFVVYVSSHRGWDKGFSISMSCAFVGLVCLALGKPFYRVRVPGESPLLRVLQVLVVTVKNWKVDLP-NSDELYELRDRKSLTNAELIPHTNQFRLLDKAAVLPEGMEARKWSVCSVTQVEEVKILTRMMPILISTIFMNTCLAQLQTFSVQQGTIMNTFIGKLNVPPASIPVIPLVFMSLLIPVYEFAFVPILRKITGHPYGITHLQRVGVGLVLSAISMGIAGIIEVKRKHEFIHHNYRISLFWLAFHYAIFGIADMFTFVGLLEFFYKEAPPSMRSLSTSFSFLSLSLGFFLSTVFVELINLVTGKLGKSKTGWLAGLDMNKNHLERFYWFLAVLSILNFANYVFWAKWYKYKTDVPIDEEMLLRSSHAGGVDQSLSASTLSFITK 1261
BLAST of XM_017363111.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835IMH6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9619969.1}))
HSP 1 Score: 780.015 bits (2013), Expect = 0.000e+0
Identity = 362/533 (67.92%), Postives = 438/533 (82.18%), Query Frame = 0
Match: A0A835IMH6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9619969.1}))
HSP 1 Score: 780.015 bits (2013), Expect = 0.000e+0
Identity = 362/533 (67.92%), Postives = 438/533 (82.18%), Query Frame = 0
Query: 839 REGGFRATLFVFGLMLLDNIGFVANMASLVLYFMNVMHFSISGSANTLTNYLGTAFLLTLVGGLISDSYMSRLNTCLLFGGIELLGYLLLIIQSHYPELQPEVCGKYSCVDGTKALLFYASICFAALGGGGLRGSAPALGADQFD---PKQTKEIASFFNWFLFSITVGASIGVTVVVWVSTNKGWDNGFIISMVCSFIGFCSVAVGKPYYRARVPGESVLLRVLEVLVVTIKNLKVELPQNSRDLYEIDD----MGRERIRHSYQFRVLDKAAILPEGTTPKKWKVCTVTQVEEVKILTRMMPILLSTTLMNTCLAQLQTFSIQQGSLMNTKLGNFNVPAASIPIIPLFFMSLLIPLYEILLVPLLRKLTGHPNGITHLQRVGVGLVLSAICMTLAGIIELKRKNAFVDHNTRISLFWLSFHFAVFGIADMFTLVGLLEFFYSEAPPRMRSLSTSFSFLSLSIGYYLSSVFVEIINSVTGKLSSNNVGWLEDMDMNKNHLERFYWFLAVISVLNFGNYIFWANWYKYKKDVP 1364
++GG + T+F+F +M L+NIGFVANMASLVLYF+ M F +SGSA T TNYLG AF+LTLVGG ISD+YM+RLNTCL+FG IELLGYLL+IIQSHY +LQP+ C +CV G +AL+ YASI ALG GG+RGS PALGADQ+D PK +A FFNWFL SIT+GA+IGVT++VWVSTNKGWD GFIISM+C+F+G +A GKP++R RVPG+S LLRV +VL V +KN +LP+NS LYE D + +E I H+ QFR+LDKAAILP G P KWKVC VTQVEEVKILTRMMPILLST LMNTCLAQLQT S+QQG LMNTK+G+F VPAASIP+IPL FMS+LIP+YE VP++RKLTGHP+GITHLQRVGVGLVLSA+ M +AGIIE+KRKN ++H RISLFWLSFH+A+FGIADMFTLVGL+EFFYSEAP MRSLSTSF++LSLS+GY+LSSV VE+ N +T K++++ GWLE DMNK+H+ FYWFLA++SVLNF NY++WA WY +KK+ P
Sbjct: 24 KQGGHKPTIFIFLMMGLENIGFVANMASLVLYFLFAMQFDLSGSATTTTNYLGAAFMLTLVGGFISDTYMTRLNTCLVFGVIELLGYLLMIIQSHYKKLQPKPCKDSACVKGLEALMLYASIFLLALGAGGIRGSIPALGADQYDQKTPKGRMYVARFFNWFLLSITIGATIGVTIIVWVSTNKGWDKGFIISMLCAFVGLIIIASGKPFFRVRVPGDSALLRVFQVLAVMVKNRNEQLPENSNALYEPYDQESVLSKEEIPHTDQFRLLDKAAILPNGVKPGKWKVCPVTQVEEVKILTRMMPILLSTILMNTCLAQLQTLSVQQGILMNTKIGSFEVPAASIPVIPLAFMSILIPIYEFGFVPIIRKLTGHPSGITHLQRVGVGLVLSAMSMGIAGIIEVKRKNELLNHGNRISLFWLSFHYAIFGIADMFTLVGLMEFFYSEAPAGMRSLSTSFAWLSLSVGYFLSSVLVEVTNLITSKITTSKRGWLEGRDMNKSHVNLFYWFLAILSVLNFANYLYWAKWYTFKKEAP 556
BLAST of XM_017363111.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5GHS3 ((Protein NRT1/ PTR FAMILY 4.5-like {ECO:0000313|EMBL:KAB2614433.1}) (Fragment))
HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 392/571 (68.65%), Postives = 467/571 (81.79%), Query Frame = 0
Match: A0A5N5GHS3 ((Protein NRT1/ PTR FAMILY 4.5-like {ECO:0000313|EMBL:KAB2614433.1}) (Fragment))
HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 392/571 (68.65%), Postives = 467/571 (81.79%), Query Frame = 0
Query: 827 TKDLKIKTETRPREGGFRATLFVFGLMLLDNIGFVANMASLVLYFMNVMHFSISGSANTLTNYLGTAFLLTLVGGLISDSYMSRLNTCLLFGGIELLGYLLLIIQSHYPELQPEVCGKYSCVDGTKALLFYASICFAALGGGGLRGSAPALGADQFD---PKQTKEIASFFNWFLFSITVGASIGVTVVVWVSTNKGWDNGFIISMVCSFIGFCSVAVGKPYYRARVPGESVLLRVLEVLVVTIKNLKVELPQNSRDLYEI---DDMGR-ERIRHSYQFRVLDKAAILPEGTT-PKKWKVCTVTQVEEVKILTRMMPILLSTTLMNTCLAQLQTFSIQQGSLMNTKLGNFNVPAASIPIIPLFFMSLLIPLYEILLVPLLRKLTGHPNGITHLQRVGVGLVLSAICMTLAGIIELKRKNAFVDHNTRISLFWLSFHFAVFGIADMFTLVGLLEFFYSEAPPRMRSLSTSFSFLSLSIGYYLSSVFVEIINSVTGKLSSNNVGWLEDMDMNKNHLERFYWFLAVISVLNFGNYIFWANWYKYKKDVPVDRQKLMD----QSFSDASMRFTAK 1385
KDL + TR ++GGF+A F+F +M LDNIGFVANMASLVLYFM V+HF +SGSA T T+YLGT FLLT+VGG ISD+YM+RLNT LLFG IELLGY+LLIIQSHY +LQP C + SCV GTKALLFYASI F ALGGGG+RG+ PALGADQFD P + K IASFFNW L SITVGA +GVT VV+VS + GWD GFIIS+ C+ +G VA+G+PYYR RVPG+S L+RVLEVLVV++KN KVE+PQ+S +LYEI D + E I HS QFR+LDKAA+LP G + KWKVCTVTQVEEVK+LTRMMPILLST LMNTCLAQLQT SIQQG+LMNT++G+FNVP+ASIP+IPL FMSLLIP+YE VPLLRK+TGHPNGITHLQRVGVGLVLSAI M +AG++E+KRK+ V HN +ISLFWLSFH+A+FGIADMFTLVGL+EFFY EAP MRSLSTSFS+LSLSIGYYLS+VFVE+IN++T K + N +GWLE DMNK+H + FYWFLA++SV+NFG Y++ A WYKYK D+ VD + L+ QSFS + + +K
Sbjct: 8 AKDLAYEPLTR-KQGGFKANYFIFAMMFLDNIGFVANMASLVLYFMFVIHFDLSGSATTTTSYLGTTFLLTIVGGFISDAYMNRLNTTLLFGVIELLGYMLLIIQSHYTKLQPLPCLESSCVHGTKALLFYASISFVALGGGGIRGAIPALGADQFDSKDPNEHKLIASFFNWLLLSITVGAVVGVTFVVYVSISVGWDIGFIISLSCAAVGLIFVALGRPYYRVRVPGDSPLIRVLEVLVVSVKNWKVEVPQSSDELYEIRAHDSASKAELIPHSSQFRLLDKAAVLPAGLSGAGKWKVCTVTQVEEVKVLTRMMPILLSTILMNTCLAQLQTLSIQQGTLMNTRIGDFNVPSASIPVIPLLFMSLLIPIYEFAFVPLLRKITGHPNGITHLQRVGVGLVLSAISMAIAGLVEVKRKHEMVHHNHKISLFWLSFHYAIFGIADMFTLVGLMEFFYKEAPAGMRSLSTSFSWLSLSIGYYLSTVFVELINTITSKFTKNKMGWLEGRDMNKSHADYFYWFLAILSVVNFGIYVWCAKWYKYKNDIAVDEEMLLKAGGPQSFSASGVSIVSK 577
BLAST of XM_017363111.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A218W552 ((protein NRT1/ PTR FAMILY 4.5-like isoform X1 {ECO:0000313|RefSeq:XP_031395751.1}))
HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 376/547 (68.74%), Postives = 447/547 (81.72%), Query Frame = 0
Match: A0A218W552 ((protein NRT1/ PTR FAMILY 4.5-like isoform X1 {ECO:0000313|RefSeq:XP_031395751.1}))
HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 376/547 (68.74%), Postives = 447/547 (81.72%), Query Frame = 0
Query: 827 TKDLKIKTETRPREGGFRATLFVFGLMLLDNIGFVANMASLVLYFMNVMHFSISGSANTLTNYLGTAFLLTLVGGLISDSYMSRLNTCLLFGGIELLGYLLLIIQSHYPELQPEVCGKY--SCVDGTKALLFYASICFAALGGGGLRGSAPALGADQFD---PKQTKEIASFFNWFLFSITVGASIGVTVVVWVSTNKGWDNGFIISMVCSFIGFCSVAVGKPYYRARVPGESVLLRVLEVLVVTIKNLKVELPQNSRDLYEIDDMGRERIR------HSYQFRVLDKAAILPEGTTPKKWKVCTVTQVEEVKILTRMMPILLSTTLMNTCLAQLQTFSIQQGSLMNTKLGNFNVPAASIPIIPLFFMSLLIPLYEILLVPLLRKLTGHPNGITHLQRVGVGLVLSAICMTLAGIIELKRKNAFVDHNTRISLFWLSFHFAVFGIADMFTLVGLLEFFYSEAPPRMRSLSTSFSFLSLSIGYYLSSVFVEIINSVTGKLSSNNVGWLEDMDMNKNHLERFYWFLAVISVLNFGNYIFWANWYKYKKD 1362
K+L + R+GGFRAT F+F +M LDNIGFVANMAS+VLYFM VM F +SGSA T TNYLG F+LTLVGG ISDSYM+RLNT L+FG IEL+GY+LLI+QSHY +LQP+ C + +CV G+KALLFY SIC ALGGGG+RGS PALGADQFD PK+ K +ASFFNWFL SIT+GA++GVT VV+VST WD GF ISM C+F+G VA+GKP+YR R+PG+S LLRVLEVLVV++KN + ELP NS +L+EI D R+ IR HS QFR LDKAAI+P+GT P++WKVCTVTQVEEVKIL RMMPILLST LMNTCLAQLQTFS+QQG+LM+ LG F VP ASIP+IPL FMSLLIP+YE + VPL+R++TGHPNGITHLQRVGVGLVLSAI M +AG++E+KRK+ + HN +ISLFWLSFH+A+FGIADMFTLVGL+EFFYSEAP MRSLSTSFS++SLSIGY+LSS FV +IN V+ L GWL+ DMN NH+ERFYWFLA++SV+NF NY+FWANWYKYK D
Sbjct: 16 AKELPYQPMKNQRQGGFRATYFIFAMMFLDNIGFVANMASMVLYFMYVMKFDLSGSATTTTNYLGATFILTLVGGFISDSYMTRLNTALVFGAIELMGYMLLIVQSHYQKLQPKPCAETESTCVHGSKALLFYTSICLVALGGGGIRGSIPALGADQFDQKDPKERKSLASFFNWFLLSITIGATLGVTFVVYVSTKVRWDIGFSISMCCAFLGLVFVALGKPFYRVRIPGDSPLLRVLEVLVVSVKNWRKELPSNSDELHEIRD--RKAIRKGELIPHSVQFRFLDKAAIVPKGTDPQRWKVCTVTQVEEVKILARMMPILLSTILMNTCLAQLQTFSVQQGTLMDVNLGGFQVPPASIPVIPLVFMSLLIPVYEFMFVPLIRRITGHPNGITHLQRVGVGLVLSAISMGIAGLVEVKRKHELLHHNHKISLFWLSFHYAIFGIADMFTLVGLMEFFYSEAPVGMRSLSTSFSWMSLSIGYFLSSAFVGLINKVSRHLGKAPKGWLQGRDMNTNHVERFYWFLAILSVVNFVNYLFWANWYKYKND 560
BLAST of XM_017363111.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P8DES6 ((protein NRT1/ PTR FAMILY 4.5-like isoform X2 {ECO:0000313|RefSeq:XP_031395752.1}))
HSP 1 Score: 768.844 bits (1984), Expect = 0.000e+0
Identity = 376/547 (68.74%), Postives = 447/547 (81.72%), Query Frame = 0
Match: A0A6P8DES6 ((protein NRT1/ PTR FAMILY 4.5-like isoform X2 {ECO:0000313|RefSeq:XP_031395752.1}))
HSP 1 Score: 768.844 bits (1984), Expect = 0.000e+0
Identity = 376/547 (68.74%), Postives = 447/547 (81.72%), Query Frame = 0
Query: 827 TKDLKIKTETRPREGGFRATLFVFGLMLLDNIGFVANMASLVLYFMNVMHFSISGSANTLTNYLGTAFLLTLVGGLISDSYMSRLNTCLLFGGIELLGYLLLIIQSHYPELQPEVCGKY--SCVDGTKALLFYASICFAALGGGGLRGSAPALGADQFD---PKQTKEIASFFNWFLFSITVGASIGVTVVVWVSTNKGWDNGFIISMVCSFIGFCSVAVGKPYYRARVPGESVLLRVLEVLVVTIKNLKVELPQNSRDLYEIDDMGRERIR------HSYQFRVLDKAAILPEGTTPKKWKVCTVTQVEEVKILTRMMPILLSTTLMNTCLAQLQTFSIQQGSLMNTKLGNFNVPAASIPIIPLFFMSLLIPLYEILLVPLLRKLTGHPNGITHLQRVGVGLVLSAICMTLAGIIELKRKNAFVDHNTRISLFWLSFHFAVFGIADMFTLVGLLEFFYSEAPPRMRSLSTSFSFLSLSIGYYLSSVFVEIINSVTGKLSSNNVGWLEDMDMNKNHLERFYWFLAVISVLNFGNYIFWANWYKYKKD 1362
K+L + R+GGFRAT F+F +M LDNIGFVANMAS+VLYFM VM F +SGSA T TNYLG F+LTLVGG ISDSYM+RLNT L+FG IEL+GY+LLI+QSHY +LQP+ C + +CV G+KALLFY SIC ALGGGG+RGS PALGADQFD PK+ K +ASFFNWFL SIT+GA++GVT VV+VST WD GF ISM C+F+G VA+GKP+YR R+PG+S LLRVLEVLVV++KN + ELP NS +L+EI D R+ IR HS QFR LDKAAI+P+GT P++WKVCTVTQVEEVKIL RMMPILLST LMNTCLAQLQTFS+QQG+LM+ LG F VP ASIP+IPL FMSLLIP+YE + VPL+R++TGHPNGITHLQRVGVGLVLSAI M +AG++E+KRK+ + HN +ISLFWLSFH+A+FGIADMFTLVGL+EFFYSEAP MRSLSTSFS++SLSIGY+LSS FV +IN V+ L GWL+ DMN NH+ERFYWFLA++SV+NF NY+FWANWYKYK D
Sbjct: 11 AKELPYQPMKNQRQGGFRATYFIFAMMFLDNIGFVANMASMVLYFMYVMKFDLSGSATTTTNYLGATFILTLVGGFISDSYMTRLNTALVFGAIELMGYMLLIVQSHYQKLQPKPCAETESTCVHGSKALLFYTSICLVALGGGGIRGSIPALGADQFDQKDPKERKSLASFFNWFLLSITIGATLGVTFVVYVSTKVRWDIGFSISMCCAFLGLVFVALGKPFYRVRIPGDSPLLRVLEVLVVSVKNWRKELPSNSDELHEIRD--RKAIRKGELIPHSVQFRFLDKAAIVPKGTDPQRWKVCTVTQVEEVKILARMMPILLSTILMNTCLAQLQTFSVQQGTLMDVNLGGFQVPPASIPVIPLVFMSLLIPVYEFMFVPLIRRITGHPNGITHLQRVGVGLVLSAISMGIAGLVEVKRKHELLHHNHKISLFWLSFHYAIFGIADMFTLVGLMEFFYSEAPVGMRSLSTSFSWMSLSIGYFLSSAFVGLINKVSRHLGKAPKGWLQGRDMNTNHVERFYWFLAILSVVNFVNYLFWANWYKYKND 555
| Match Name | Stats | Description |
|---|---|---|
| A0A2P6QZW7 | E-Value: 0.000e+0, PID: 71.35 | (Putative proton-dependent oligopeptide transporte... [more] |
| A0A4S4DJ46 | E-Value: 0.000e+0, PID: 70.93 | (Uncharacterized protein {ECO:0000313|EMBL:THG0287... [more] |
| A0A4S4E2Z5 | E-Value: 0.000e+0, PID: 71.53 | (Uncharacterized protein {ECO:0000313|EMBL:THG1025... [more] |
| A0A540KA25 | E-Value: 0.000e+0, PID: 69.78 | (Uncharacterized protein {ECO:0000313|EMBL:TQD7106... [more] |
| A0A5N5FB10 | E-Value: 0.000e+0, PID: 69.78 | (Protein NRT1/ PTR FAMILY 4.5-like {ECO:0000313|EM... [more] |
| A0A5N6RGG7 | E-Value: 0.000e+0, PID: 69.80 | BZIP domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A835IMH6 | E-Value: 0.000e+0, PID: 67.92 | (Uncharacterized protein {ECO:0000313|EMBL:KAF9619... [more] |
| A0A5N5GHS3 | E-Value: 0.000e+0, PID: 68.65 | (Protein NRT1/ PTR FAMILY 4.5-like {ECO:0000313|EM... [more] |
| A0A218W552 | E-Value: 0.000e+0, PID: 68.74 | (protein NRT1/ PTR FAMILY 4.5-like isoform X1 {ECO... [more] |
| A0A6P8DES6 | E-Value: 0.000e+0, PID: 68.74 | (protein NRT1/ PTR FAMILY 4.5-like isoform X2 {ECO... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |