Resource Type:
Polypeptide
Name:
XM_017363506.1
Identifier:
XM_017363506.1-protein
Sequence:
MFGFFFSALKKVYHLFRKVFGNRQQSLPSTKQDLKDPQKYHLRQQLLPST
KQDLKDPDTYHLLQQSLPSTKQDLKDPEKYHLCQQSLPSTKQDLKDPQKY
HHCQQSLPSTKQDLKDPHKYHHNAFSFSRIKSPDSFPSAQNAPTTQRQTL
PSPVYNQPKDTLPRVTLKVDSGINTRKTPYAPIETHSALPGSAKSPAVLN
KPVLCHAAPGSTSHLTKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVL
KKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGK
YKQSSGVKKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGI
IFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASAS
DMLFKKFLFPNCQPKYSSHYSTAITRIINITDSHPYLLEGSLSITRNNQL
SGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIF
RANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSS
FRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPG
NQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLEDDSGFPAT
SYFR
Sequence Length:
654
Sequence Checksum:
b7b34115b15e1d3ebf68aa886902456d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017363506.1, derives from mRNA, XM_017363506.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017363506.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017363506.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B2P6 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA63122.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA63122.1}))
HSP 1 Score: 560.451 bits (1443), Expect = 0.000e+0
Identity = 287/468 (61.32%), Postives = 343/468 (73.29%), Query Frame = 0
Match: A0A5B7B2P6 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA63122.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA63122.1}))
HSP 1 Score: 560.451 bits (1443), Expect = 0.000e+0
Identity = 287/468 (61.32%), Postives = 343/468 (73.29%), Query Frame = 0
Query: 216 TKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYKQSSGV-KKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNC---------------QPKYSSHYSTAITRIINITDSHPYLLEGSLSITRNNQ-------LSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQ-REFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLE-------DDSGFPATSY 652
TKS Y VE+G++PLY IPEDIK LI++DIVP VLKKPLSP TYKDYFAALLYAEDYYLEKWDGFEMKDVTL LHEA IY RKGKYK + KKDDKIFV F++ +IP +RPFLLSRDFASVRPSGR ++PFQG+I+RVVKSN+VLVEFG DFH+QHYS+CKYDVKFSFNRVCLKRAHQ+IA+ASD LF+ FLFP C K ++A+ +I+++ PYL+EG +S+ Q LSGTG +VR+ V+Q+ +T R+LICAP+NSTCDV M SL+ R+ +S++FRANAAFRE+ GVPDDILP C YK E F+ L +L KFKVI STFMSS RLH+ GI GHFTH+ LVDASSA EPE +V L NL + T V++TG+PGN WVRS IAR NGL+TS FERL S Y+ L P+ IT LE D FP +SY
Sbjct: 243 TKSNYIQVEKGTSPLYVIPEDIKGLIEKDIVPGVLKKPLSPSTYKDYFAALLYAEDYYLEKWDGFEMKDVTLELHEAAIYRRKGKYKDLNEFDKKDDKIFVAFKVDSIPTRRPFLLSRDFASVRPSGREVEPFQGVIYRVVKSNLVLVEFGKDFHSQHYSACKYDVKFSFNRVCLKRAHQAIAAASDSLFRNFLFPACVSRNCYTASSQLLSIDHKLDVEEASAVRQILSLQGPPPYLVEGPISVISTKQDGGFIRRLSGTGMVVREAVLQIYRTFPKCRILICAPMNSTCDVLMMSLKNRDIPESDMFRANAAFRELYGVPDDILPSCLYKG--ECFSFHLLKELKKFKVISSTFMSSVRLHNEGIMAGHFTHIFLVDASSAIEPEAIVALANLANEGTAVVITGAPGNSPFWVRSKIARQNGLKTSCFERLSDSKLYKNLGPKVITHLENTERKSDDTYWFPDSSY 708
BLAST of XM_017363506.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PGL3 ((RNA helicase SDE3 {ECO:0000313|EMBL:PSR91002.1}))
HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 271/458 (59.17%), Postives = 345/458 (75.33%), Query Frame = 0
Match: A0A2R6PGL3 ((RNA helicase SDE3 {ECO:0000313|EMBL:PSR91002.1}))
HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 271/458 (59.17%), Postives = 345/458 (75.33%), Query Frame = 0
Query: 201 KPVLCHAAPGSTSHLTKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYKQ-SSGVKKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPKYSSHYS--------------TAITRIINITDSHPYLLEGSLSITRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLED 643
KP LC A T K+ Y VE+G++P+Y IPED+K L K+D+VP VLKKPLSP TYKD+F ALL+AED+Y+EKWDGF+M++VTL LHEA IY+RKGKY + +KDDK+FV FEI +IPE+RPFLLSRDF SV+PSG+ + FQG+I+RVVKSN+VLVEFG+DFH QHYS+CKYD+KFSFNRVCLKRAHQ+I++A+D LF+ FLFP+C+P+ S + +A+ RI+ PYL+EG +S+ + QLS TG++V + V Q+ Q S +R+LICAP+NSTCDV R L+ +S++FRANAAFRE+DGVP DILP C YK+ E F+CPS+ +L F+VILSTFMSSFRLH GI GHF+H+ LVDASSATEPEIMV L NL + T V++TG P N + W+RS+IAR NGL SYFERLRKS Y L+ + IT+LED
Sbjct: 178 KPTLCLAPSTPTKSRAKNNYICVEKGASPVYAIPEDLKDLFKKDVVPRVLKKPLSPSTYKDFFDALLFAEDFYIEKWDGFKMENVTLELHEAAIYKRKGKYNNLNVNDEKDDKVFVAFEIDSIPERRPFLLSRDFVSVQPSGKKAELFQGLIYRVVKSNLVLVEFGEDFHYQHYSACKYDIKFSFNRVCLKRAHQAISAATDPLFRSFLFPDCKPENSLVAALVEFINPKLDPAQISAVRRILCHKTPPPYLVEGPISVNESKQLSRTGSVVCEAVFQIYQISPSSRILICAPINSTCDVITRILKNLIPESDMFRANAAFRELDGVPFDILPTCLYKR--ECFSCPSMQELRNFRVILSTFMSSFRLHGEGIMAGHFSHIFLVDASSATEPEIMVALANLANERTTVVMTGDPRNHTGWIRSNIARQNGLMISYFERLRKSKLYMSLDSKVITKLED 633
BLAST of XM_017363506.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZGX7 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA42918.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA42918.1}))
HSP 1 Score: 555.058 bits (1429), Expect = 0.000e+0
Identity = 277/463 (59.83%), Postives = 347/463 (74.95%), Query Frame = 0
Match: A0A5B6ZGX7 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA42918.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA42918.1}))
HSP 1 Score: 555.058 bits (1429), Expect = 0.000e+0
Identity = 277/463 (59.83%), Postives = 347/463 (74.95%), Query Frame = 0
Query: 201 KPVLCHAAPGSTSHLTKSTY-NIVEEGST-PLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYKQSSGV-KKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPKYSSHYST----------------AITRIINITDSHPYLLEGSLSI-TRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLED 643
KP L A T+H K+ Y + EEG++ P+Y IPEDIK LI++DIVP VL+KPLS TYKDYF ALLYA+DYYLEKWDGFEM++VTL LHEA IY RKGK K + +KDDK+FV FEI +IPE+RPFLLSRDFAS RPS R + FQGII+RVVKS +VLVEFG+DFH+QHY + KY VKFSFNRVCLKRAHQ+IA+ SD LF+ FLFP+C P+ S +T A+ +I+++ PY++EG LS+ T + QLS TG +VR+ ++Q+ +T R+LICAP+NSTCDV MRS++ E +S++FRANAAFRE+DGVPDDILP C YK E F+CP L +L +FKVI +TFMSSFRLH+ G+ GHF+H+ LVDASSATEPE MV L NL + T V++TG+PGN+S + S IAR NGL SYFERLR+S Y+ L+P+FITQLED
Sbjct: 143 KPTLSLAPSNLTNHHAKTNYIRVDEEGTSYPIYAIPEDIKALIEKDIVPGVLRKPLSSSTYKDYFDALLYADDYYLEKWDGFEMENVTLELHEAAIYRRKGKNKDLNKFDEKDDKVFVAFEIDSIPERRPFLLSRDFASARPSDRKAESFQGIIYRVVKSTLVLVEFGEDFHSQHYPARKYSVKFSFNRVCLKRAHQAIAAVSDSLFRNFLFPDCVPRNSLTITTSSQLSIDHKLDRVQVSAVRQILSLQGPPPYIVEGPLSVSTFSKQLSRTGMIVREAMLQIYRTFPSCRILICAPINSTCDVLMRSVKNEIRESDMFRANAAFRELDGVPDDILPSCLYKG--ECFSCPPLQELRRFKVICTTFMSSFRLHTEGMMAGHFSHIFLVDASSATEPEAMVALVNLANDKTSVVITGAPGNRSGLIHSKIARQNGLMISYFERLRESKLYKSLDPKFITQLED 603
BLAST of XM_017363506.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZEX6 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA42917.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA42917.1}))
HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 277/463 (59.83%), Postives = 347/463 (74.95%), Query Frame = 0
Match: A0A5B6ZEX6 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA42917.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA42917.1}))
HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 277/463 (59.83%), Postives = 347/463 (74.95%), Query Frame = 0
Query: 201 KPVLCHAAPGSTSHLTKSTY-NIVEEG-STPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYKQSSGV-KKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPKYSSHYST----------------AITRIINITDSHPYLLEGSLSI-TRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLED 643
KP L A T+H K+ Y + EEG S+P+Y IPEDIK LI++DIVP VL+KPLS TYKDYF ALLYA+DYYLEKWDGFE+++VTL LHEA IY RKGK K + +KDDK+FV FEI +IPE+RPFLLSRDFAS RPS R + FQGII+RVVKS +VLVEFG+DFH+QHY + KY VKFSFNRVCLKRAHQ+IA+ SD LF+ FLFP+C P+ S +T A+ +I+++ PY++EG LS+ T + QLS TG +VR+ ++Q+ +T R+LICAP+NSTCDV MRS++ E +S++FRANAAFRE+DGVPDDILP C YK E F+CP L +L +FKVI +TFMSSFRLH+ G+ GHF+H+ LVDASSATEPE MV L NL + T V++TG+PGN+S + S IAR NGL SYFERLR+S Y+ L+P+FITQLED
Sbjct: 148 KPALSLAPSNLTNHHAKTNYIRVDEEGTSSPIYAIPEDIKALIEKDIVPGVLRKPLSSSTYKDYFDALLYADDYYLEKWDGFEIENVTLELHEAAIYRRKGKNKDLNKFDEKDDKVFVAFEIDSIPERRPFLLSRDFASARPSDRKAESFQGIIYRVVKSTLVLVEFGEDFHSQHYPARKYSVKFSFNRVCLKRAHQAIAAVSDSLFRNFLFPDCVPRNSLTITTSSQLSIDHKLDRVQVSAVRQILSLQGPPPYIVEGPLSVSTFSKQLSRTGMIVREAMLQIYRTFPSCRILICAPINSTCDVLMRSVKNEIRESDMFRANAAFRELDGVPDDILPSCLYKG--ECFSCPPLQELRRFKVICTTFMSSFRLHTEGMMAGHFSHIFLVDASSATEPEAMVALVNLANDKTSVVITGAPGNRSGLIHSKIARQNGLMISYFERLRESKLYKSLDPKFITQLED 608
BLAST of XM_017363506.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LRJ3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7145093.1}))
HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0
Identity = 275/471 (58.39%), Postives = 344/471 (73.04%), Query Frame = 0
Match: A0A834LRJ3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7145093.1}))
HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0
Identity = 275/471 (58.39%), Postives = 344/471 (73.04%), Query Frame = 0
Query: 187 SALPGSAKSPAVLNKPVLCHAAPGSTSHLTKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYKQSS-GVKKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPKYS--------------SHYSTAITRIINITDSHPYLLEGSLSITRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQR-EFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQL 641
A P S K KP L A ST+ +K+ Y +VE+ ++P+Y IPED+K IK D+VP +LK+PLSP TYKDYF ALLYAED+YLEKWDGFEMK+VTL L EA IY+RKGK + +KDDK+FV FE+ +IPE+RPFLLSRDF SV PSG +P QG+I+RVVKSN VLVEFG+DFHAQHYS+CKY+VKFSFNRVCLKRAHQ+IA+ASD LF+ FLFP+ K S H +A+ I++ ++ PYL+EG ++I R+N LS TG++V + V+Q+ +TS L R+LICAP N CDV RSL R + +S IFRANAAFRE+DGVP+DILP C Y+++ E F+CPS+ +LLK+KVI STFMSSFRLH+ GI GHF+H+ LVDASS EPE MV L NL + +T V VTG+P N S W+RS IAR NGL SYFERLR+S Y L+ + IT L
Sbjct: 157 GAPPSSPKPRQPSTKPFLSLAPSNSTNPNSKTAYILVEKDASPIYAIPEDLKDSIKNDVVPGILKRPLSPSTYKDYFEALLYAEDFYLEKWDGFEMKNVTLELEEASIYKRKGKQNNKNVDDEKDDKVFVTFELDSIPERRPFLLSRDFVSVSPSGTRAEPLQGLIYRVVKSNRVLVEFGEDFHAQHYSACKYNVKFSFNRVCLKRAHQAIATASDPLFRNFLFPDSISKNSLLTAQLPSIDSNLDWHQISAVRHILSNQNAVPYLVEGPIAIDRSNVLSRTGSVVCEAVLQVYRTSPLCRILICAPTNKGCDVITRSLIRGKIPESNIFRANAAFRELDGVPEDILPSCLYRKERECFSCPSIHELLKYKVISSTFMSSFRLHNVGIMAGHFSHIFLVDASSVIEPEAMVALANLANENTVVTVTGAPENHSGWIRSHIARQNGLLISYFERLRQSKLYDSLDSKVITVL 627
BLAST of XM_017363506.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VC28 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027099522.1, ECO:0000313|RefSeq:XP_027099523.1}))
HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 264/468 (56.41%), Postives = 340/468 (72.65%), Query Frame = 0
Match: A0A6P6VC28 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027099522.1, ECO:0000313|RefSeq:XP_027099523.1}))
HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 264/468 (56.41%), Postives = 340/468 (72.65%), Query Frame = 0
Query: 192 SAKSPAVLNKPVLCHAAPGSTSHLTKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYK--QSSGVKKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPKYS--------SHYSTA---ITRIINITDSHPYLLEGSLSITRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLEDDSG 646
S KSP + KPVL A+ S S TK+ Y V++G + P+DI+ LI++DIVP VLK PLS Y DYF ALLYAED +LEKWDGFE+K+V L LHEA IY RKGK+K + S +K D+K FV FEI IPE+RPFLLSRDF SV+P R I+PFQG+I+RVVKSN+VL EFG+ F++QH S CKYDVKFSFNRVCLKRAHQ+IA+ S LF+ FLFP+ P++ + Y A + +I+ + + PYL+EG + I R++ LS TG + + +Q+ + ++L+CAP+N TCD+ MR L++E SDS++FRANAAFRE+DG+P DILP C Y+ + E F+CPSL +L KFKVILSTFMSSF+LHS G++ GHF+H+ LVDASSATEPE M+P+ N + T V+VTG+P N S WVRS IAR NGL SYFERLR+ Y++LNP I QLED+S
Sbjct: 165 SQKSPPLSTKPVLSLASTSSISPQTKTEYVWVKKGVSSTCVFPKDIRDLIEKDIVPGVLKLPLSMSRYMDYFQALLYAEDCHLEKWDGFEVKNVNLELHEASIYARKGKHKTLEESDLK-DEKTFVAFEIDKIPERRPFLLSRDFVSVQPCSRKIEPFQGVIYRVVKSNLVLAEFGESFYSQHRSECKYDVKFSFNRVCLKRAHQAIAAVSSALFRNFLFPDLAPEHEVLSTQRVDNRYQKANFVVHQILRLQGAPPYLVEGPMCIERDH-LSRTGVAIVEAALQILRRDPSKKILLCAPINRTCDLLMRGLKKEISDSDMFRANAAFRELDGIPVDILPSCLYESQTECFSCPSLKELGKFKVILSTFMSSFKLHSEGVKAGHFSHIFLVDASSATEPETMIPIANFANDKTIVVVTGAPRNSSGWVRSKIARQNGLMISYFERLRERELYKKLNPGVIMQLEDNSN 630
BLAST of XM_017363506.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V0P3 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027096408.1}))
HSP 1 Score: 533.872 bits (1374), Expect = 4.998e-180
Identity = 268/468 (57.26%), Postives = 345/468 (73.72%), Query Frame = 0
Match: A0A6P6V0P3 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027096408.1}))
HSP 1 Score: 533.872 bits (1374), Expect = 4.998e-180
Identity = 268/468 (57.26%), Postives = 345/468 (73.72%), Query Frame = 0
Query: 192 SAKSPAVLNKPVLCHAAPGSTSHLTKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKY---KQSSGVKKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPK---YSSHY--------STAITRIINITDSHPYLLEGSLSITRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLEDDS 645
S K P + KPVL A+ STS TK+ Y V++G+ Y PE+I LI++DIVP VLK PLS TY DYF ALLYAED +LEKWDGFEMK+V L HEA I+ RKGK+ K+S +KD+K FV FE IPE+RPFLLSRDF SV+P GR I+PFQG+I+RVVKSN+VL EFG+ F++QH S CKYDVKFSFNRVCLKRAHQ+IA+ S LF+ FLFP+ P+ S+ Y + + +I+ + + PYL+EG + I R++ LS TG ++ + +Q+ + ++L+CAP+N TCD+ MR L++E SDS++FRANAAFRE+DG+P DILP C Y+ + E F+CPSL +L KFK+ILSTFMSSF+LHS G++ GHF+H+ LVDASSATEPE MVPL N + T V+VTG+P N S W+RS IAR NGL TSYFERLRKS+ Y EL+P+ ITQL+D+S
Sbjct: 211 SQKPPPLSTKPVLSLASTSSTSPQTKTKYIWVDKGAPSTYVFPENISALIEKDIVPGVLKMPLSMSTYMDYFQALLYAEDCHLEKWDGFEMKNVNLEFHEASIFTRKGKHNTLKESD--QKDEKTFVAFEFDKIPERRPFLLSRDFVSVQPCGRKIEPFQGVIYRVVKSNLVLAEFGESFYSQHRSECKYDVKFSFNRVCLKRAHQAIAAVSSALFRNFLFPDLPPENVVLSTQYVDNRYQKANFVVHQILRLQGAPPYLVEGPMCIERDH-LSRTGVVIVEAALQILRLDPSKKILLCAPINRTCDLLMRGLKKEISDSDMFRANAAFRELDGIPVDILPSCLYESQTECFSCPSLEELGKFKIILSTFMSSFKLHSEGVKVGHFSHIFLVDASSATEPETMVPLANFANDKTIVVVTGAPRNHSGWIRSKIARENGLLTSYFERLRKSDLYNELDPKVITQLDDNS 675
BLAST of XM_017363506.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068U9J3 ((Uncharacterized protein {ECO:0000313|EMBL:CDP04869.1}))
HSP 1 Score: 533.102 bits (1372), Expect = 2.715e-179
Identity = 268/468 (57.26%), Postives = 345/468 (73.72%), Query Frame = 0
Match: A0A068U9J3 ((Uncharacterized protein {ECO:0000313|EMBL:CDP04869.1}))
HSP 1 Score: 533.102 bits (1372), Expect = 2.715e-179
Identity = 268/468 (57.26%), Postives = 345/468 (73.72%), Query Frame = 0
Query: 192 SAKSPAVLNKPVLCHAAPGSTSHLTKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKY---KQSSGVKKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPK---YSSHY--------STAITRIINITDSHPYLLEGSLSITRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLEDDS 645
S K P + KPVL A+ STS TK+ Y V++G+ Y PE+I LI++DIVP VLK PLS TY DYF ALLYAED +LEKWDGFEMK+V L HEA I+ RKGK+ K+S +KD+K FV FE IPE+RPFLLSRDF SV+P GR I+PFQG+I+RVVKSN+VL EFG+ F++QH S CKYDVKFSFNRVCLKRAHQ+IA+ S LF+ FLFP+ P+ S+ Y + + +I+ + + PYL+EG + I R+ +LS TG ++ + +Q+ + ++L+CAP+N TCD+ MR L++E SDS++FRANAAFRE+DG+P DILP C Y+ + E F+CPSL +L KFK+ILSTFMSSF+LHS G++ GHF+H+ LVDASSATEPE MVPL N + T V+VTG+P N S W+RS IAR NGL TSYFERLRKS+ Y EL+P+ ITQL+D+S
Sbjct: 248 SQKPPPLSTKPVLSLASTSSTSPQTKTKYIWVDKGAPSTYVFPENISALIEKDIVPGVLKMPLSMSTYMDYFQALLYAEDCHLEKWDGFEMKNVNLEFHEASIFTRKGKHNTLKESD--QKDEKTFVAFEFDKIPERRPFLLSRDFVSVQPCGRKIEPFQGVIYRVVKSNLVLAEFGESFYSQHRSECKYDVKFSFNRVCLKRAHQAIAAVSSALFRNFLFPDLPPENVVLSTQYVDNRYQKANFVVHQILRLQGAPPYLVEGPMCIERD-RLSRTGVVIVEAALQILRLDPSKKILLCAPINRTCDLLMRGLKKEISDSDMFRANAAFRELDGIPVDILPSCLYESQTECFSCPSLEELGKFKIILSTFMSSFKLHSEGVKVGHFSHIFLVDASSATEPETMVPLANFANDKTIVVVTGAPRNHSGWIRSKIARENGLLTSYFERLRKSDLYNELDPKVITQLDDNS 712
BLAST of XM_017363506.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BGT7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8541480.1}))
HSP 1 Score: 531.946 bits (1369), Expect = 3.274e-179
Identity = 268/431 (62.18%), Postives = 324/431 (75.17%), Query Frame = 0
Match: A0A5J5BGT7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8541480.1}))
HSP 1 Score: 531.946 bits (1369), Expect = 3.274e-179
Identity = 268/431 (62.18%), Postives = 324/431 (75.17%), Query Frame = 0
Query: 216 TKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYKQSSGV-KKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFP-NCQPKYSSHYS--------------TAITRIINITDSHPYLLEGSLSITRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFY 630
KS Y V++ S+PLY IPEDIK LI++DIVP VLKK LS TYKDYFAALLYAEDYY EKW+GFEMK+VTL L +A IY RKGKYK + KKD+K+FV FEI +IPE+RPFLLSRDFA VRPSGR +DPF+GII+RVVKSN+VLVEFGDDFH+QHYS+CKYDV FSFNRVCLKRAHQ+IA+ASD LF+ FLFP C + S S +A+ +I+++ PYL++G +SI +LS TG +VR+ V+Q+ +T R+LICAP+NSTCDV M SL+ + +S++FRANAAFRE VPDDILP C Y+ E F+CPSL +L KFKVI STFMSSFRLH+ GI GHF+H+ LVDAS A EPE +VPL NL T +++TG+ GN RWVRS IAR NGL TSYFERLR S Y
Sbjct: 247 AKSNYIQVDKESSPLYVIPEDIKGLIEKDIVPGVLKKSLSQSTYKDYFAALLYAEDYYFEKWNGFEMKNVTLELQDAAIYRRKGKYKNLNKFDKKDEKMFVAFEIDSIPERRPFLLSRDFAFVRPSGREVDPFKGIIYRVVKSNLVLVEFGDDFHSQHYSACKYDVNFSFNRVCLKRAHQAIAAASDPLFRNFLFPAGCVARNSCTASQLVSIDRNLDMEKASAVRQILSLQGPPPYLVDGPISII-TRELSRTGMVVREAVLQIYRTFPKCRILICAPMNSTCDVLMMSLKEDIPESDMFRANAAFREFYEVPDDILPSCLYEG--ECFSCPSLQKLKKFKVIFSTFMSSFRLHNEGIMAGHFSHIFLVDASFAMEPETIVPLANLADERTPLVITGTTGNGPRWVRSKIARQNGLTTSYFERLRGSKLY 674
BLAST of XM_017363506.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V132 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027096404.1, ECO:0000313|RefSeq:XP_027096405.1}))
HSP 1 Score: 530.406 bits (1365), Expect = 1.568e-178
Identity = 259/468 (55.34%), Postives = 334/468 (71.37%), Query Frame = 0
Match: A0A6P6V132 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027096404.1, ECO:0000313|RefSeq:XP_027096405.1}))
HSP 1 Score: 530.406 bits (1365), Expect = 1.568e-178
Identity = 259/468 (55.34%), Postives = 334/468 (71.37%), Query Frame = 0
Query: 192 SAKSPAVLNKPVLCHAAPGSTSHLTKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYK--QSSGVKKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPKYS-----------SHYSTAITRIINITDSHPYLLEGSLSITRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLEDDSG 646
S K P + KPVL + S S TK+ Y VE+G + Y P+ I+ LI++DIVP VLK+PLS TY DYF ALLYAED +LEKWDGFE+K+V L LHEA IY RK K+K + S +K D+K FV FEI IPE+RPFLLSRDF SV+P R I+PFQG+I+RVVKSN+VL EFG F++QH CKYDVKFSFNRVCLKRAHQ+IA S F+ FLFP+ P++ + A+ +I+ + + PYL+EG + I+ LS TG ++ + Q+ ++ ++L+CAP+N TCD+ +R L++E SDS+IFRANAAFREVDG+P DILP C Y+++ E F+CP L +L KFK+ILSTFMSSFRLHS G++ GHF+H+ LVDASSATEPE M+P+ N + T V+VTG+P N+S WVRS IAR NGL SYFERLR+ Y++LNP I QLED+S
Sbjct: 224 SQKPPPLSTKPVLSLVSTSSISLQTKTKYVWVEKGVSSTYVFPKGIRDLIEKDIVPGVLKQPLSMSTYMDYFQALLYAEDCHLEKWDGFEVKNVNLELHEASIYMRKRKHKTLEESDLK-DEKTFVAFEIDEIPERRPFLLSRDFVSVQPCSRKIEPFQGVIYRVVKSNLVLAEFGKSFYSQHRPECKYDVKFSFNRVCLKRAHQAIADVSSASFRNFLFPDLPPEHEVLSTQRVDNRYQKANFAVHQILRLQGAPPYLVEGPMCISEGGHLSRTGVVIVEAARQILRSDPSKKILLCAPVNKTCDLLLRGLKKEMSDSDIFRANAAFREVDGIPVDILPSCLYERQTECFSCPPLEELRKFKIILSTFMSSFRLHSEGVKAGHFSHIFLVDASSATEPETMIPIANFANDKTIVVVTGAPRNRSGWVRSKIARQNGLMISYFERLRERELYKKLNPGVIMQLEDNSN 690
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B2P6 | E-Value: 0.000e+0, PID: 61.32 | (Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA6... [more] |
| A0A2R6PGL3 | E-Value: 0.000e+0, PID: 59.17 | (RNA helicase SDE3 {ECO:0000313|EMBL:PSR91002.1})[more] |
| A0A5B6ZGX7 | E-Value: 0.000e+0, PID: 59.83 | (Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA4... [more] |
| A0A5B6ZEX6 | E-Value: 0.000e+0, PID: 59.83 | (Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA4... [more] |
| A0A834LRJ3 | E-Value: 0.000e+0, PID: 58.39 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7145... [more] |
| A0A6P6VC28 | E-Value: 0.000e+0, PID: 56.41 | (probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP... [more] |
| A0A6P6V0P3 | E-Value: 4.998e-180, PID: 57.26 | (probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP... [more] |
| A0A068U9J3 | E-Value: 2.715e-179, PID: 57.26 | (Uncharacterized protein {ECO:0000313|EMBL:CDP0486... [more] |
| A0A5J5BGT7 | E-Value: 3.274e-179, PID: 62.18 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8541... [more] |
| A0A6P6V132 | E-Value: 1.568e-178, PID: 55.34 | (probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |