Resource Type:
Polypeptide
Name:
XM_017363507.1
Identifier:
XM_017363507.1-protein
Sequence:
MLSFLRCVLCCDDEINTGQSESESYYDESPSQPFNYRVILDNYDTFSRTQ
IDKTTRTHDICTTYRFPPKSNPPPVYNPPKQTLSRINDKVISESKKTPTG
KDTIVFPRPASSSSRVVLPPQPSPISPSLSKKPILAPAPSSSTLNQAKSQ
YNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYA
EDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKNNNQKDEKIFVEFEV
DSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFH
AQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLL
KGKILFSSHKLDSSAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIR
DAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRE
LDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGI
EGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRS
TIARQNGLKTSYFERLRQSKLYRDLNPESITQISDDSSSSLSYFRADHSP
AE
Sequence Length:
602
Sequence Checksum:
137e4778482caa6f308a22fd7961f401
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017363507.1, derives from mRNA, XM_017363507.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017363507.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017363507.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PGL3 ((RNA helicase SDE3 {ECO:0000313|EMBL:PSR91002.1}))
HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 297/460 (64.57%), Postives = 367/460 (79.78%), Query Frame = 0
Match: A0A2R6PGL3 ((RNA helicase SDE3 {ECO:0000313|EMBL:PSR91002.1}))
HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 297/460 (64.57%), Postives = 367/460 (79.78%), Query Frame = 0
Query: 130 SKKPILAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKN-NNQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFSSHKLDS---SAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISD 585
S KP L APS+ T ++AK+ Y VE+G++P++ IPED+K L +KD+VP VLKKPLSP TYKD+F+ALL+AED+Y+EKWDGF+M NVTL+L+EA I++RKGK N N N++KD+K+FV FE+DSIPERRPFLLSRDF SV+P+G K + FQG+I+RVV+SN+VLVEFGEDFH QHYS+CKYD+KFSFNRVCLKRAHQAI+A +D FR FLFPDC+PE L+ + F + KLD SA+ RI+ PP YL+EGPISV KQLSRTG V+ +AV Q+ Q+S +RILICAP NSTCDV R L+ + +SD+FRANAAFRELDGVP DILP C YK+ E FSCPS+ +L+ F+VILSTFMSSFRLH EGI GHF+HIFLVDASSA EPE++V L NL N T VV+TG P N +GW+RS IARQNGL SYFERLR+SKLY L+ + IT++ D
Sbjct: 176 STKPTLCLAPSTPTKSRAKNNYICVEKGASPVYAIPEDLKDLFKKDVVPRVLKKPLSPSTYKDFFDALLFAEDFYIEKWDGFKMENVTLELHEAAIYKRKGKYNNLNVNDEKDDKVFVAFEIDSIPERRPFLLSRDFVSVQPSGKKAELFQGLIYRVVKSNLVLVEFGEDFHYQHYSACKYDIKFSFNRVCLKRAHQAISAATDPLFRSFLFPDCKPENSLVAALVEFINPKLDPAQISAVRRILCHKTPPPYLVEGPISVNESKQLSRTGSVVCEAVFQIYQISPSSRILICAPINSTCDVITRILKNLIPESDMFRANAAFRELDGVPFDILPTCLYKR--ECFSCPSMQELRNFRVILSTFMSSFRLHGEGIMAGHFSHIFLVDASSATEPEIMVALANLANERTTVVMTGDPRNHTGWIRSNIARQNGLMISYFERLRKSKLYMSLDSKVITKLED 633
BLAST of XM_017363507.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZGX7 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA42918.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA42918.1}))
HSP 1 Score: 608.986 bits (1569), Expect = 0.000e+0
Identity = 308/474 (64.98%), Postives = 373/474 (78.69%), Query Frame = 0
Match: A0A5B6ZGX7 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA42918.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA42918.1}))
HSP 1 Score: 608.986 bits (1569), Expect = 0.000e+0
Identity = 308/474 (64.98%), Postives = 373/474 (78.69%), Query Frame = 0
Query: 121 QPSPISPSLSKKPILAPAPSSSTLNQAKSQY-NVVEQGST-PLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKNN-NQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVL--LKGKILFSSHKLDS---SAISRIINLSGPPAYLLEGPISV-TRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISD 585
QP P +P +K P L+ APS+ T + AK+ Y V E+G++ P++ IPEDIK LI KDIVPGVL+KPLS TYKDYF+ALLYA+DYYLEKWDGFEM NVTL+L+EA I+RRKGK+K+ N ++KD+K+FV FE+DSIPERRPFLLSRDFAS RP+ K + FQGII+RVV+S +VLVEFGEDFH+QHY + KY VKFSFNRVCLKRAHQAIAAVSD FR FLFPDC P L L HKLD SA+ +I++L GPP Y++EGP+SV T KQLSRTGM++R+A++Q+ + RILICAP NSTCDV MRS++ E+ +SD+FRANAAFRELDGVP DILP C YK E FSCP L +L++FKVI +TFMSSFRLH EG+ GHF+HIFLVDASSA EPE +V L NL N T+VVITGAP N+SG + S IARQNGL SYFERLR+SKLY+ L+P+ ITQ+ D
Sbjct: 134 QP-PAAPRCTK-PTLSLAPSNLTNHHAKTNYIRVDEEGTSYPIYAIPEDIKALIEKDIVPGVLRKPLSSSTYKDYFDALLYADDYYLEKWDGFEMENVTLELHEAAIYRRKGKNKDLNKFDEKDDKVFVAFEIDSIPERRPFLLSRDFASARPSDRKAESFQGIIYRVVKSTLVLVEFGEDFHSQHYPARKYSVKFSFNRVCLKRAHQAIAAVSDSLFRNFLFPDCVPRNSLTITTSSQLSIDHKLDRVQVSAVRQILSLQGPPPYIVEGPLSVSTFSKQLSRTGMIVREAMLQIYRTFPSCRILICAPINSTCDVLMRSVKNEIRESDMFRANAAFRELDGVPDDILPSCLYKG--ECFSCPPLQELRRFKVICTTFMSSFRLHTEGMMAGHFSHIFLVDASSATEPEAMVALVNLANDKTSVVITGAPGNRSGLIHSKIARQNGLMISYFERLRESKLYKSLDPKFITQLED 603
BLAST of XM_017363507.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZEX6 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA42917.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA42917.1}))
HSP 1 Score: 607.831 bits (1566), Expect = 0.000e+0
Identity = 307/476 (64.50%), Postives = 371/476 (77.94%), Query Frame = 0
Match: A0A5B6ZEX6 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA42917.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA42917.1}))
HSP 1 Score: 607.831 bits (1566), Expect = 0.000e+0
Identity = 307/476 (64.50%), Postives = 371/476 (77.94%), Query Frame = 0
Query: 119 PPQPSPISPSLSKKPILAPAPSSSTLNQAKSQY-NVVEQG-STPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKNN-NQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVL--LKGKILFSSHKLDS---SAISRIINLSGPPAYLLEGPISV-TRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISD 585
PP P + KP L+ APS+ T + AK+ Y V E+G S+P++ IPEDIK LI KDIVPGVL+KPLS TYKDYF+ALLYA+DYYLEKWDGFE+ NVTL+L+EA I+RRKGK+K+ N ++KD+K+FV FE+DSIPERRPFLLSRDFAS RP+ K + FQGII+RVV+S +VLVEFGEDFH+QHY + KY VKFSFNRVCLKRAHQAIAAVSD FR FLFPDC P L L HKLD SA+ +I++L GPP Y++EGP+SV T KQLSRTGM++R+A++Q+ + RILICAP NSTCDV MRS++ E+ +SD+FRANAAFRELDGVP DILP C YK E FSCP L +L++FKVI +TFMSSFRLH EG+ GHF+HIFLVDASSA EPE +V L NL N T+VVITGAP N+SG + S IARQNGL SYFERLR+SKLY+ L+P+ ITQ+ D
Sbjct: 140 PPAAPPCT-----KPALSLAPSNLTNHHAKTNYIRVDEEGTSSPIYAIPEDIKALIEKDIVPGVLRKPLSSSTYKDYFDALLYADDYYLEKWDGFEIENVTLELHEAAIYRRKGKNKDLNKFDEKDDKVFVAFEIDSIPERRPFLLSRDFASARPSDRKAESFQGIIYRVVKSTLVLVEFGEDFHSQHYPARKYSVKFSFNRVCLKRAHQAIAAVSDSLFRNFLFPDCVPRNSLTITTSSQLSIDHKLDRVQVSAVRQILSLQGPPPYIVEGPLSVSTFSKQLSRTGMIVREAMLQIYRTFPSCRILICAPINSTCDVLMRSVKNEIRESDMFRANAAFRELDGVPDDILPSCLYKG--ECFSCPPLQELRRFKVICTTFMSSFRLHTEGMMAGHFSHIFLVDASSATEPEAMVALVNLANDKTSVVITGAPGNRSGLIHSKIARQNGLMISYFERLRESKLYKSLDPKFITQLED 608
BLAST of XM_017363507.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B2P6 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA63122.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA63122.1}))
HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 313/479 (65.34%), Postives = 368/479 (76.83%), Query Frame = 0
Match: A0A5B7B2P6 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA63122.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA63122.1}))
HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 313/479 (65.34%), Postives = 368/479 (76.83%), Query Frame = 0
Query: 135 LAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKNN-NQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFS-SHKLD---SSAISRIINLSGPPAYLLEGPISVTRDKQ-------LSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLR-KEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISD-DSSSSLSYFRADHS 599
L+ P + + +Q KS Y VE+G++PL+VIPEDIKGLI KDIVPGVLKKPLSP TYKDYF ALLYAEDYYLEKWDGFEM +VTL+L+EA I+RRKGK K+ N ++KD+KIFV F+VDSIP RRPFLLSRDFASVRP+G +V+PFQG+I+RVV+SN+VLVEFG+DFH+QHYS+CKYDVKFSFNRVCLKRAHQAIAA SD FR FLFP C L S HKLD +SA+ +I++L GPP YL+EGPISV KQ LS TGMV+R+AV+Q+ + RILICAP NSTCDV M SL+ +++ +SD+FRANAAFREL GVP DILP C YK E FS L +L+KFKVI STFMSS RLHNEGI GHFTHIFLVDASSAIEPE +V L NL N T VVITGAP N WVRS IARQNGLKTS FERL SKLY++L P+ IT + + + S +Y+ D S
Sbjct: 231 LSLGPFNLSNDQTKSNYIQVEKGTSPLYVIPEDIKGLIEKDIVPGVLKKPLSPSTYKDYFAALLYAEDYYLEKWDGFEMKDVTLELHEAAIYRRKGKYKDLNEFDKKDDKIFVAFKVDSIPTRRPFLLSRDFASVRPSGREVEPFQGVIYRVVKSNLVLVEFGKDFHSQHYSACKYDVKFSFNRVCLKRAHQAIAAASDSLFRNFLFPACVSRNCYTASSQLLSIDHKLDVEEASAVRQILSLQGPPPYLVEGPISVISTKQDGGFIRRLSGTGMVVREAVLQIYRTFPKCRILICAPMNSTCDVLMMSLKNRDIPESDMFRANAAFRELYGVPDDILPSCLYKG--ECFSFHLLKELKKFKVISSTFMSSVRLHNEGIMAGHFTHIFLVDASSAIEPEAIVALANLANEGTAVVITGAPGNSPFWVRSKIARQNGLKTSCFERLSDSKLYKNLGPKVITHLENTERKSDDTYWFPDSS 707
BLAST of XM_017363507.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LRJ3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7145093.1}))
HSP 1 Score: 600.127 bits (1546), Expect = 0.000e+0
Identity = 297/468 (63.46%), Postives = 360/468 (76.92%), Query Frame = 0
Match: A0A834LRJ3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7145093.1}))
HSP 1 Score: 600.127 bits (1546), Expect = 0.000e+0
Identity = 297/468 (63.46%), Postives = 360/468 (76.92%), Query Frame = 0
Query: 119 PPQPSPISPSLSKKPILAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKN-NNQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFSSHKLDS---SAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSL-RKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESIT 581
P P P PS KP L+ APS+ST +K+ Y +VE+ ++P++ IPED+K I+ D+VPG+LK+PLSP TYKDYFEALLYAED+YLEKWDGFEM NVTL+L EA I++RKGK NKN +++KD+K+FV FE+DSIPERRPFLLSRDF SV P+GT+ +P QG+I+RVV+SN VLVEFGEDFHAQHYS+CKY+VKFSFNRVCLKRAHQAIA SD FR FLFPD + LL ++ LD SA+ I++ YL+EGPI++ R LSRTG V+ +AV+Q+ + S RILICAPTN CDV RSL R ++ +S+IFRANAAFRELDGVP DILP C Y+K+ E FSCPS+ +L K+KVI STFMSSFRLHN GI GHF+HIFLVDASS IEPE +V L NL N +T V +TGAPEN SGW+RS IARQNGL SYFERLRQSKLY L+ + IT
Sbjct: 160 PSSPKPRQPS--TKPFLSLAPSNSTNPNSKTAYILVEKDASPIYAIPEDLKDSIKNDVVPGILKRPLSPSTYKDYFEALLYAEDFYLEKWDGFEMKNVTLELEEASIYKRKGKQNNKNVDDEKDDKVFVTFELDSIPERRPFLLSRDFVSVSPSGTRAEPLQGLIYRVVKSNRVLVEFGEDFHAQHYSACKYNVKFSFNRVCLKRAHQAIATASDPLFRNFLFPDSISKNSLLTAQLPSIDSNLDWHQISAVRHILSNQNAVPYLVEGPIAIDRSNVLSRTGSVVCEAVLQVYRTSPLCRILICAPTNKGCDVITRSLIRGKIPESNIFRANAAFRELDGVPEDILPSCLYRKERECFSCPSIHELLKYKVISSTFMSSFRLHNVGIMAGHFSHIFLVDASSVIEPEAMVALANLANENTVVTVTGAPENHSGWIRSHIARQNGLLISYFERLRQSKLYDSLDSKVIT 625
BLAST of XM_017363507.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V0P3 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027096408.1}))
HSP 1 Score: 594.734 bits (1532), Expect = 0.000e+0
Identity = 287/463 (61.99%), Postives = 359/463 (77.54%), Query Frame = 0
Match: A0A6P6V0P3 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027096408.1}))
HSP 1 Score: 594.734 bits (1532), Expect = 0.000e+0
Identity = 287/463 (61.99%), Postives = 359/463 (77.54%), Query Frame = 0
Query: 127 PSLSKKPILAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKN-KNNNQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFSSHKLDSSAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISDDSS 588
P LS KP+L+ A +SST Q K++Y V++G+ +V PE+I LI KDIVPGVLK PLS TY DYF+ALLYAED +LEKWDGFEM NV L+ +EA I RKGK K ++QKDEK FV FE D IPERRPFLLSRDF SV+P G K++PFQG+I+RVV+SN+VL EFGE F++QH S CKYDVKFSFNRVCLKRAHQAIAAVS FR FLFPD PE V+L + + + ++ + + +I+ L G P YL+EGP+ + RD LSRTG+VI +A +Q+ ++ +IL+CAP N TCD+ MR L+KE+ DSD+FRANAAFRELDG+P+DILP C Y+ + E FSCPSL +L KFK+ILSTFMSSF+LH+EG++ GHF+HIFLVDASSA EPE +VPL N N T VV+TGAP N SGW+RS IAR+NGL TSYFERLR+S LY +L+P+ ITQ+ D+S+
Sbjct: 215 PPLSTKPVLSLASTSSTSPQTKTKYIWVDKGAPSTYVFPENISALIEKDIVPGVLKMPLSMSTYMDYFQALLYAEDCHLEKWDGFEMKNVNLEFHEASIFTRKGKHNTLKESDQKDEKTFVAFEFDKIPERRPFLLSRDFVSVQPCGRKIEPFQGVIYRVVKSNLVLAEFGESFYSQHRSECKYDVKFSFNRVCLKRAHQAIAAVSSALFRNFLFPDLPPENVVLSTQYVDNRYQKANFVVHQILRLQGAPPYLVEGPMCIERD-HLSRTGVVIVEAALQILRLDPSKKILLCAPINRTCDLLMRGLKKEISDSDMFRANAAFRELDGIPVDILPSCLYESQTECFSCPSLEELGKFKIILSTFMSSFKLHSEGVKVGHFSHIFLVDASSATEPETMVPLANFANDKTIVVVTGAPRNHSGWIRSKIARENGLLTSYFERLRKSDLYNELDPKVITQLDDNST 676
BLAST of XM_017363507.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068U9J3 ((Uncharacterized protein {ECO:0000313|EMBL:CDP04869.1}))
HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 287/463 (61.99%), Postives = 360/463 (77.75%), Query Frame = 0
Match: A0A068U9J3 ((Uncharacterized protein {ECO:0000313|EMBL:CDP04869.1}))
HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 287/463 (61.99%), Postives = 360/463 (77.75%), Query Frame = 0
Query: 127 PSLSKKPILAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKN-KNNNQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFSSHKLDSSAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISDDSS 588
P LS KP+L+ A +SST Q K++Y V++G+ +V PE+I LI KDIVPGVLK PLS TY DYF+ALLYAED +LEKWDGFEM NV L+ +EA I RKGK K ++QKDEK FV FE D IPERRPFLLSRDF SV+P G K++PFQG+I+RVV+SN+VL EFGE F++QH S CKYDVKFSFNRVCLKRAHQAIAAVS FR FLFPD PE V+L + + + ++ + + +I+ L G P YL+EGP+ + RD+ LSRTG+VI +A +Q+ ++ +IL+CAP N TCD+ MR L+KE+ DSD+FRANAAFRELDG+P+DILP C Y+ + E FSCPSL +L KFK+ILSTFMSSF+LH+EG++ GHF+HIFLVDASSA EPE +VPL N N T VV+TGAP N SGW+RS IAR+NGL TSYFERLR+S LY +L+P+ ITQ+ D+S+
Sbjct: 252 PPLSTKPVLSLASTSSTSPQTKTKYIWVDKGAPSTYVFPENISALIEKDIVPGVLKMPLSMSTYMDYFQALLYAEDCHLEKWDGFEMKNVNLEFHEASIFTRKGKHNTLKESDQKDEKTFVAFEFDKIPERRPFLLSRDFVSVQPCGRKIEPFQGVIYRVVKSNLVLAEFGESFYSQHRSECKYDVKFSFNRVCLKRAHQAIAAVSSALFRNFLFPDLPPENVVLSTQYVDNRYQKANFVVHQILRLQGAPPYLVEGPMCIERDR-LSRTGVVIVEAALQILRLDPSKKILLCAPINRTCDLLMRGLKKEISDSDMFRANAAFRELDGIPVDILPSCLYESQTECFSCPSLEELGKFKIILSTFMSSFKLHSEGVKVGHFSHIFLVDASSATEPETMVPLANFANDKTIVVVTGAPRNHSGWIRSKIARENGLLTSYFERLRKSDLYNELDPKVITQLDDNST 713
BLAST of XM_017363507.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VC28 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027099522.1, ECO:0000313|RefSeq:XP_027099523.1}))
HSP 1 Score: 588.571 bits (1516), Expect = 0.000e+0
Identity = 286/479 (59.71%), Postives = 359/479 (74.95%), Query Frame = 0
Match: A0A6P6VC28 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027099522.1, ECO:0000313|RefSeq:XP_027099523.1}))
HSP 1 Score: 588.571 bits (1516), Expect = 0.000e+0
Identity = 286/479 (59.71%), Postives = 359/479 (74.95%), Query Frame = 0
Query: 111 SSSSRVVLPPQPSPISPSLSKKPILAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKN-KNNNQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFSSHKLDSSAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISDDSS 588
S SS L S SP LS KP+L+ A +SS Q K++Y V++G + V P+DI+ LI KDIVPGVLK PLS Y DYF+ALLYAED +LEKWDGFE+ NV L+L+EA I+ RKGK K + ++ KDEK FV FE+D IPERRPFLLSRDF SV+P K++PFQG+I+RVV+SN+VL EFGE F++QH S CKYDVKFSFNRVCLKRAHQAIAAVS FR FLFPD PE +L + + + ++ + + +I+ L G P YL+EGP+ + RD LSRTG+ I +A +Q+ + +IL+CAP N TCD+ MR L+KE+ DSD+FRANAAFRELDG+P+DILP C Y+ + E FSCPSL +L KFKVILSTFMSSF+LH+EG++ GHF+HIFLVDASSA EPE ++P+ N N T VV+TGAP N SGWVRS IARQNGL SYFERLR+ +LY+ LNP I Q+ D+S+
Sbjct: 153 SPSSYTKLADSCSQKSPPLSTKPVLSLASTSSISPQTKTEYVWVKKGVSSTCVFPKDIRDLIEKDIVPGVLKLPLSMSRYMDYFQALLYAEDCHLEKWDGFEVKNVNLELHEASIYARKGKHKTLEESDLKDEKTFVAFEIDKIPERRPFLLSRDFVSVQPCSRKIEPFQGVIYRVVKSNLVLAEFGESFYSQHRSECKYDVKFSFNRVCLKRAHQAIAAVSSALFRNFLFPDLAPEHEVLSTQRVDNRYQKANFVVHQILRLQGAPPYLVEGPMCIERD-HLSRTGVAIVEAALQILRRDPSKKILLCAPINRTCDLLMRGLKKEISDSDMFRANAAFRELDGIPVDILPSCLYESQTECFSCPSLKELGKFKVILSTFMSSFKLHSEGVKAGHFSHIFLVDASSATEPETMIPIANFANDKTIVVVTGAPRNSSGWVRSKIARQNGLMISYFERLRERELYKKLNPGVIMQLEDNSN 630
BLAST of XM_017363507.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834H3A4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7145472.1}))
HSP 1 Score: 585.874 bits (1509), Expect = 0.000e+0
Identity = 286/462 (61.90%), Postives = 354/462 (76.62%), Query Frame = 0
HSP 2 Score: 570.081 bits (1468), Expect = 0.000e+0
Identity = 289/468 (61.75%), Postives = 352/468 (75.21%), Query Frame = 0
Match: A0A834H3A4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7145472.1}))
HSP 1 Score: 585.874 bits (1509), Expect = 0.000e+0
Identity = 286/462 (61.90%), Postives = 354/462 (76.62%), Query Frame = 0
Query: 119 PPQPSPISPSLSKKPILAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKN-NNQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFSSHKLDS---SAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLN 576
P P P PS KP L+ APS+ T + +K+ Y + E+ ++P++ IPED K LI+ D+VPG+LK+PLSP TYKD+FEALLYAED+YLEKWDGFEM VTL+L EA IH+RKGK KN +++KD+K+FV FE+DSIPERRPFLLSRDF SV P+GTK +PFQG+I+RVV+SN VLV+FG+DFHAQHYS+CKY+VKFSFNRVCLKRAHQA+A SD FR FLFPD + LL ++ LD SA+ I++ YL+EGPI+V + LSRTG V+ +A++Q+ + S RILICAPTN CDV R LR ++ +S+IFRANAAFRELDGVP DILP C YKK+ E F+CPS+ +LQK+KVI STFMSSFRLHN GI+ GHF+HIFLVDASS IEPE +V L NL + ST V +TGAP N SGW+ S +ARQNGL SYFERLR+SKLY L+
Sbjct: 255 PSSPKPHRPS--TKPFLSLAPSNPTNSNSKTAYILDEKDASPIYAIPEDFKDLIKNDVVPGILKRPLSPSTYKDFFEALLYAEDFYLEKWDGFEMEKVTLELEEASIHKRKGKYNKKNVDDEKDDKVFVAFELDSIPERRPFLLSRDFVSVSPSGTKAEPFQGLIYRVVKSNRVLVDFGKDFHAQHYSACKYNVKFSFNRVCLKRAHQAVATASDNLFRNFLFPDSISKNSLLTAQLPSIDSNLDWHQISAVRHILSNQNAVPYLVEGPIAVD-NFSLSRTGFVVCEAILQVYRTSPSCRILICAPTNKGCDVLTRRLRGKIPESNIFRANAAFRELDGVPEDILPSCLYKKERECFTCPSIRELQKYKVISSTFMSSFRLHNVGIKAGHFSHIFLVDASSVIEPEAMVALANLADESTVVTVTGAPRNHSGWIHSHMARQNGLLISYFERLRKSKLYDSLD 713
HSP 2 Score: 570.081 bits (1468), Expect = 0.000e+0
Identity = 289/468 (61.75%), Postives = 352/468 (75.21%), Query Frame = 0
Query: 124 PISPSL---SKKPILAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKN-NNQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGK---ILFSSHKLDSSAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSL-RKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKE--EVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESIT 581
P +P L S KPIL+ APS T +K+ YN + G++P + IPED K I+ D+VP +LK+PLSP TYKDYFEALLYAED+YLEKWDGFEM NVTL+L EA IH+R GK KN +++KD+K+FV FE+DSIPERRPFLLSRDF SV P+GT+ +PFQG+I+RVV+SN VLVEFGEDFH QH S+CKY+VKFSFNRVCLKRAHQA+A SD FR FLFPD + L + I H++ SA+ I++ YL+EGPI++ + LSRTG+V+ +AV+Q+ + S RILICAPTN CDV RSL R ++ +S+IFRANAAFRELDGVP DILP C YKK++ E FSCPS+ +LQKFKVI STFMSS RLHNEGI GHF+HIFLVDASS IEPE +V L NL N ST V +TGAP N SGW+ S +ARQNGL SYFERLR+SKLY + + IT
Sbjct: 917 PSTPQLGRPSTKPILSVAPSDPTNPNSKTTYNCI--GASPTYAIPEDFKDSIKNDVVPRILKRPLSPSTYKDYFEALLYAEDFYLEKWDGFEMKNVTLELEEASIHKRIGKYNKKNVDDEKDDKVFVAFELDSIPERRPFLLSRDFVSVSPSGTRAEPFQGLIYRVVKSNRVLVEFGEDFHVQHRSACKYNVKFSFNRVCLKRAHQAVATASDPLFRNFLFPDSISKNSFLSAQLPSIDLDWHQI--SAVRHILSNQNAVPYLVEGPIAID-NFSLSRTGLVVCEAVLQVYRTSPSCRILICAPTNKGCDVITRSLIRGKIPESNIFRANAAFRELDGVPEDILPSCFYKKEKERECFSCPSIHELQKFKVISSTFMSSHRLHNEGITAGHFSHIFLVDASSVIEPEAMVALANLANESTVVTVTGAPRNHSGWIHSNMARQNGLLVSYFERLRKSKLYDSPDSKVIT 1379
BLAST of XM_017363507.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BGT7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8541480.1}))
HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0
Identity = 292/443 (65.91%), Postives = 349/443 (78.78%), Query Frame = 0
Match: A0A5J5BGT7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8541480.1}))
HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0
Identity = 292/443 (65.91%), Postives = 349/443 (78.78%), Query Frame = 0
Query: 135 LAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKNN-NQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFP-DCRPEKVLLKGKILFSSHKLD---SSAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLY 572
L+ PS+ + +QAKS Y V++ S+PL+VIPEDIKGLI KDIVPGVLKK LS TYKDYF ALLYAEDYY EKW+GFEM NVTL+L +A I+RRKGK KN N ++KDEK+FV FE+DSIPERRPFLLSRDFA VRP+G +VDPF+GII+RVV+SN+VLVEFG+DFH+QHYS+CKYDV FSFNRVCLKRAHQAIAA SD FR FLFP C +++ LD +SA+ +I++L GPP YL++GPIS+ ++LSRTGMV+R+AV+Q+ + RILICAP NSTCDV M SL++++ +SD+FRANAAFRE VP DILP C Y+ E FSCPSL +L+KFKVI STFMSSFRLHNEGI GHF+HIFLVDAS A+EPE +VPL NL + T +VITG N WVRS IARQNGL TSYFERLR SKLY
Sbjct: 235 LSLGPSNLSNDQAKSNYIQVDKESSPLYVIPEDIKGLIEKDIVPGVLKKSLSQSTYKDYFAALLYAEDYYFEKWNGFEMKNVTLELQDAAIYRRKGKYKNLNKFDKKDEKMFVAFEIDSIPERRPFLLSRDFAFVRPSGREVDPFKGIIYRVVKSNLVLVEFGDDFHSQHYSACKYDVNFSFNRVCLKRAHQAIAAASDPLFRNFLFPAGCVARNSCTASQLVSIDRNLDMEKASAVRQILSLQGPPPYLVDGPISII-TRELSRTGMVVREAVLQIYRTFPKCRILICAPMNSTCDVLMMSLKEDIPESDMFRANAAFREFYEVPDDILPSCLYEG--ECFSCPSLQKLKKFKVIFSTFMSSFRLHNEGIMAGHFSHIFLVDASFAMEPETIVPLANLADERTPLVITGTTGNGPRWVRSKIARQNGLTTSYFERLRGSKLY 674
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6PGL3 | E-Value: 0.000e+0, PID: 64.57 | (RNA helicase SDE3 {ECO:0000313|EMBL:PSR91002.1})[more] |
| A0A5B6ZGX7 | E-Value: 0.000e+0, PID: 64.98 | (Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA4... [more] |
| A0A5B6ZEX6 | E-Value: 0.000e+0, PID: 64.50 | (Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA4... [more] |
| A0A5B7B2P6 | E-Value: 0.000e+0, PID: 65.34 | (Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA6... [more] |
| A0A834LRJ3 | E-Value: 0.000e+0, PID: 63.46 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7145... [more] |
| A0A6P6V0P3 | E-Value: 0.000e+0, PID: 61.99 | (probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP... [more] |
| A0A068U9J3 | E-Value: 0.000e+0, PID: 61.99 | (Uncharacterized protein {ECO:0000313|EMBL:CDP0486... [more] |
| A0A6P6VC28 | E-Value: 0.000e+0, PID: 59.71 | (probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP... [more] |
| A0A834H3A4 | E-Value: 0.000e+0, PID: 61.90 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7145... [more] |
| A0A5J5BGT7 | E-Value: 0.000e+0, PID: 65.91 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8541... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |