Resource Type:
Polypeptide
Name:
XM_017364428.1
Identifier:
XM_017364428.1-protein
Sequence:
MSGNESGDSSIWSREQDIMFENALATYSEDLSDRWEKIAADVPGKSLEEV
RDHYELLVDDVNRIESGCVPLPRYNSSSSGSIGQAGNEGTGKKGGSFGNF
NSESNHNGKALKSEQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNF
VVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITNVNNGEMPVSPTPI
TGQTNGSSAGGSSGKPIKQTPQLVAPGVMYGGTTIGQPVGGSLVAGTPVN
LSQPAHMGYSMIAPSGQLVPGAPVNMGPMAYPLPQTSTHR
Sequence Length:
290
Sequence Checksum:
d1f82e39a9eeef1e66e86c2b375d11ae
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364428.1, derives from mRNA, XM_017364428.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V383 ((transcription factor SRM1-like {ECO:0000313|RefSeq:XP_027097519.1}))
HSP 1 Score: 428.713 bits (1101), Expect = 3.245e-150
Identity = 218/297 (73.40%), Postives = 243/297 (81.82%), Query Frame = 0
Match: A0A6P6V383 ((transcription factor SRM1-like {ECO:0000313|RefSeq:XP_027097519.1}))
HSP 1 Score: 428.713 bits (1101), Expect = 3.245e-150
Identity = 218/297 (73.40%), Postives = 243/297 (81.82%), Query Frame = 0
Query: 1 MSGNESGDSSIWSREQDIMFENALATYSEDLSDRWEKIAADVPGKSLEEVRDHYELLVDDVNRIESGCVPLPRYNSSSSGSIGQAGNEGTGKKGGSFGNFNSESNHNGKALKSEQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITNVNNGEMPVSPTPITGQTNGSSAGGSSG---KPIKQTPQLVAPGV-MYGGTTIGQPVGGSLVA--GTPVNLSQPAHMGYSMIAP-SGQLVPGAPVNMGPMAYPLPQTSTHR 290
M+ +ES S++WSREQD FENALATY ED +DRWEKIAADVPGKSLEE++ HYE+LVDDVNRIESGCVPLP Y+S GS QAG+EGTGKK G+ G+F+SESNH GKA +S+QERRKGIAWTE+EHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT+VN G++ V PITGQTNG +A GSS KP Q P APGV MYG TTIGQPVGG LV+ GTPVNL AHM Y + AP G +VPGAPV MGP+ YP+ TS HR
Sbjct: 1 MTADES-TSAVWSREQDKAFENALATYPEDSADRWEKIAADVPGKSLEEIKHHYEILVDDVNRIESGCVPLPSYSSCLDGSTSQAGDEGTGKKSGNLGHFSSESNHGGKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNTGDVSVPQGPITGQTNGPAASGSSAKSNKPPSQAP-TAAPGVGMYGTTTIGQPVGGPLVSAVGTPVNLPPAAHMAYGVRAPVPGTMVPGAPVAMGPVTYPMSHTSAHR 295
BLAST of XM_017364428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068VFI4 ((Uncharacterized protein {ECO:0000313|EMBL:CDP18453.1}))
HSP 1 Score: 428.713 bits (1101), Expect = 3.245e-150
Identity = 218/297 (73.40%), Postives = 243/297 (81.82%), Query Frame = 0
Match: A0A068VFI4 ((Uncharacterized protein {ECO:0000313|EMBL:CDP18453.1}))
HSP 1 Score: 428.713 bits (1101), Expect = 3.245e-150
Identity = 218/297 (73.40%), Postives = 243/297 (81.82%), Query Frame = 0
Query: 1 MSGNESGDSSIWSREQDIMFENALATYSEDLSDRWEKIAADVPGKSLEEVRDHYELLVDDVNRIESGCVPLPRYNSSSSGSIGQAGNEGTGKKGGSFGNFNSESNHNGKALKSEQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITNVNNGEMPVSPTPITGQTNGSSAGGSSG---KPIKQTPQLVAPGV-MYGGTTIGQPVGGSLVA--GTPVNLSQPAHMGYSMIAP-SGQLVPGAPVNMGPMAYPLPQTSTHR 290
M+ +ES S++WSREQD FENALATY ED +DRWEKIAADVPGKSLEE++ HYE+LVDDVNRIESGCVPLP Y+S GS QAG+EGTGKK G+ G+F+SESNH GKA +S+QERRKGIAWTE+EHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT+VN G++ V PITGQTNG +A GSS KP Q P APGV MYG TTIGQPVGG LV+ GTPVNL AHM Y + AP G +VPGAPV MGP+ YP+ TS HR
Sbjct: 1 MTADES-TSAVWSREQDKAFENALATYPEDSADRWEKIAADVPGKSLEEIKHHYEILVDDVNRIESGCVPLPSYSSCLDGSTSQAGDEGTGKKSGNLGHFSSESNHGGKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNTGDVSVPQGPITGQTNGPAASGSSAKSNKPPSQAP-TAAPGVGMYGTTTIGQPVGGPLVSAVGTPVNLPPAAHMAYGVRAPVPGTMVPGAPVAMGPVTYPMSHTSAHR 295
BLAST of XM_017364428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BJT3 ((Uncharacterized protein {ECO:0000313|EMBL:MPA68061.1}))
HSP 1 Score: 424.861 bits (1091), Expect = 1.091e-148
Identity = 217/295 (73.56%), Postives = 242/295 (82.03%), Query Frame = 0
Match: A0A5B7BJT3 ((Uncharacterized protein {ECO:0000313|EMBL:MPA68061.1}))
HSP 1 Score: 424.861 bits (1091), Expect = 1.091e-148
Identity = 217/295 (73.56%), Postives = 242/295 (82.03%), Query Frame = 0
Query: 1 MSGNESGDSSIWSREQDIMFENALATYSEDLSDRWEKIAADVPGKSLEEVRDHYELLVDDVNRIESGCVPLPRYNSSSSGSIGQAGNEGTGKKGGSFGNFNSESNHNGKALKSEQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITNVNNGEMPVSP-TPITGQTNGSSAGGSSGKPIKQTPQL--VAPGV-MYGGTTIGQPVGGSLVA-GTPVNLSQPAHMGYSMIAPS-GQLVPGAPVNMGPMAYPLPQTSTH 289
M +ESG+SS+WSREQD FENALATY ED SDRWE IAADVPGKSLEE++ HYELLVDDVNRIESGCVPLP YNSS G G+EGTGKKGG FG+FNS+SNH GKA +S+QERRKGIAWTE+EHRLFL+GL+KYGKGDWRSISRN+VVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT+VNN ++ V PITGQTNGS+ GGSSGK KQ PQ PGV MYG TIGQP+G + A GTPVNL PAHM Y + AP G +VPGAP+NMGP+ YP+P S H
Sbjct: 1 MMADESGNSSVWSREQDKAFENALATYPEDSSDRWENIAADVPGKSLEEIKHHYELLVDDVNRIESGCVPLPCYNSSD-GLTSHVGDEGTGKKGGHFGHFNSDSNHGGKASRSDQERRKGIAWTEDEHRLFLIGLDKYGKGDWRSISRNYVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNEDISVPQGGPITGQTNGSATGGSSGKSSKQPPQAQGTPPGVGMYGAMTIGQPIGPLVSAVGTPVNLPPPAHMAYGVRAPVLGPVVPGAPMNMGPITYPMPHKSAH 294
BLAST of XM_017364428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2KK72 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL01p000848:mrna}))
HSP 1 Score: 423.32 bits (1087), Expect = 4.851e-148
Identity = 214/296 (72.30%), Postives = 240/296 (81.08%), Query Frame = 0
Match: A0A7N2KK72 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL01p000848:mrna}))
HSP 1 Score: 423.32 bits (1087), Expect = 4.851e-148
Identity = 214/296 (72.30%), Postives = 240/296 (81.08%), Query Frame = 0
Query: 1 MSGNESGDSSIWSREQDIMFENALATYSEDLSDRWEKIAADVPGKSLEEVRDHYELLVDDVNRIESGCVPLPRYNSSSSGSIGQAGNEGTGKKGGSFGNFNSESNHNGKALKSEQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITNVNNGEMPVSPTPITGQTNGSSAGGSSGKPIKQTPQLVAPGV---MYGGTTIGQPVGGSLVA--GTPVNLSQPAHMGYSMIAP-SGQLVPGAPVNMGPMAYPLPQTSTHR 290
M+ +E+G SS W+REQD FENALATYSED SDRWEKIAADVPGK+LEE++ HYELLVDD+N+IESGCVPLP YNS+S GS G+EGTGKKGG G++NSESNH K KS+QERRKGIAWTE+EHRLFLLGL+KYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT+V NG++ PITGQTNGS AGGSSGK KQ PQ + MYG TIGQP+GG LV+ GTPVNL AHM Y + AP G +V GAP+NM MAYP+P TS HR
Sbjct: 1 MTVDEAGSSSEWTREQDKAFENALATYSEDASDRWEKIAADVPGKTLEEIKHHYELLVDDLNQIESGCVPLPAYNSTSEGSTSHGGDEGTGKKGGHLGHYNSESNHGSKVSKSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGNGDISAPQGPITGQTNGSPAGGSSGKSTKQPPQPPSGPPGVGMYGTPTIGQPIGGPLVSAVGTPVNLPTTAHMAYGVRAPVPGAMVSGAPMNMATMAYPMPHTSAHR 296
BLAST of XM_017364428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SL13 ((transcription factor SRM1 {ECO:0000313|RefSeq:XP_011070471.1, ECO:0000313|RefSeq:XP_011070472.1}))
HSP 1 Score: 421.394 bits (1082), Expect = 2.193e-147
Identity = 214/296 (72.30%), Postives = 243/296 (82.09%), Query Frame = 0
Match: A0A6I9SL13 ((transcription factor SRM1 {ECO:0000313|RefSeq:XP_011070471.1, ECO:0000313|RefSeq:XP_011070472.1}))
HSP 1 Score: 421.394 bits (1082), Expect = 2.193e-147
Identity = 214/296 (72.30%), Postives = 243/296 (82.09%), Query Frame = 0
Query: 1 MSGNESGDSSIWSREQDIMFENALATYSEDLSDRWEKIAADVPGKSLEEVRDHYELLVDDVNRIESGCVPLPRYNSSSSGSIGQAGNEGTGKKGGSFGNFNSESNHNGKALKSEQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITNVNNGEMPVSPTPITGQTNGSSAGGSSGKPIKQTPQ--LVAPGV-MYGGTTIGQPVGGSLVA--GTPVNLSQPAHMGYSMIAP-SGQLVPGAPVNMGPMAYPLPQTSTHR 290
M +ES SS+WSREQD +FE A+ATY ED SDRWEKIAADVPGKS+EEV+ HYELLVDDVNRIESG V +P YNSSS GS AG+E TG+KGG+FG+ NSESNH GK+ +S+QERRKGIAWTE+EHRLFLLGL+KYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT+VN+G++ V PITGQTNG + G SGK K PQ + APGV MYG TIGQP+GG LV+ GTPVNL P H+ Y + AP G +VPGAP+NMGPM YP+P TS HR
Sbjct: 1 MPADES-SSSMWSREQDKLFEKAIATYPEDSSDRWEKIAADVPGKSVEEVKHHYELLVDDVNRIESGFVQVPCYNSSSDGSTSHAGDEVTGRKGGNFGHLNSESNHGGKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNSGDVSVPQGPITGQTNGPAVAGPSGKSNKSLPQTPVAAPGVAMYGPPTIGQPIGGPLVSAVGTPVNLPPPPHLAYGVGAPLPGSVVPGAPLNMGPMTYPVPHTSAHR 295
BLAST of XM_017364428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7CV03 ((Transcription factor DIVARICATA {ECO:0000313|EMBL:KAF5737952.1}))
HSP 1 Score: 422.935 bits (1086), Expect = 4.251e-147
Identity = 211/301 (70.10%), Postives = 244/301 (81.06%), Query Frame = 0
Match: A0A7J7CV03 ((Transcription factor DIVARICATA {ECO:0000313|EMBL:KAF5737952.1}))
HSP 1 Score: 422.935 bits (1086), Expect = 4.251e-147
Identity = 211/301 (70.10%), Postives = 244/301 (81.06%), Query Frame = 0
Query: 1 MSGNESGDSSIWSREQDIMFENALATYSEDLSDRWEKIAADVPGKSLEEVRDHYELLVDDVNRIESGCVPLPRYNSSSSGSIGQAGNEGTGKKGGSFGNFNSESNHNGKALKSEQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITNVNNGEMPVSPTPITGQTNGSSAGGSSGKPIKQTPQLVA--PGV-MYGGTTIGQPVGGS-LVA--GTPVNLSQPAHMGYSMIAP-----SGQLVPGAPVNMGPMAYPLPQTSTHR 290
M+ +E+ SS+W+REQD FENALAT+ ED DRWEKIAADVPGK+LEE+++HYELLV+DVN+IESGCVPLP Y +SS GS AGNEGTGKKGG FG++NSESNH K +S+QERRKGIAWTE+EHRLFLLGL+KYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT+V +G++ PITGQTNG++ G SSGK KQ PQ PGV MYG +IGQP+GG LV+ GTPVNL PAHM Y + AP G +VPGAP+NMGPM YP+P T+ HR
Sbjct: 1 MTVDEADCSSVWTREQDKTFENALATHPEDSPDRWEKIAADVPGKTLEEIKEHYELLVEDVNQIESGCVPLPNYTTSSEGSPSHAGNEGTGKKGGHFGHYNSESNHGSKGSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGSGDIAAPQGPITGQTNGTAPGASSGKSTKQPPQHPTGPPGVGMYGPPSIGQPIGGGPLVSAVGTPVNLPAPAHMAYGIRAPMPGTVPGAVVPGAPMNMGPMTYPMPHTTAHR 301
BLAST of XM_017364428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3B3I3 ((Myb_DNA-binding domain-containing protein {ECO:0000313|EMBL:GAV62342.1}))
HSP 1 Score: 420.624 bits (1080), Expect = 4.998e-147
Identity = 210/296 (70.95%), Postives = 237/296 (80.07%), Query Frame = 0
Match: A0A1Q3B3I3 ((Myb_DNA-binding domain-containing protein {ECO:0000313|EMBL:GAV62342.1}))
HSP 1 Score: 420.624 bits (1080), Expect = 4.998e-147
Identity = 210/296 (70.95%), Postives = 237/296 (80.07%), Query Frame = 0
Query: 1 MSGNESGDSSIWSREQDIMFENALATYSEDLSDRWEKIAADVPGKSLEEVRDHYELLVDDVNRIESGCVPLPRYNSSSSGSIGQAGNEGTGKKGGSFGNFNSESNHNGKALKSEQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITNVNNGEMPVSPTPITGQTNGSSAGGSSGKPIK--QTPQLVAPGV-MYGGTTIGQPVGGSLVA--GTPVNLSQPAHMGYSMIAP-SGQLVPGAPVNMGPMAYPLPQTSTHR 290
M+ ++ G SS+WSREQD FENALA Y ED SDRWEKIA DVPGK++EE++ HYELLV+D+NRIESGCVPLPRYNSSS GS+ AGNEGTGKKGG G++NSESN K +S+QERRKGIAWTE+EHRLFLLGL KYGKGDWRSISRNFV+TRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT+V NG++ PITGQ NGS AGGSSGK K PGV MYG TIGQP+GG LV+ GTPVNL PA M Y + AP G +VPGAP+NM PM YP+P T+ HR
Sbjct: 1 MTEDKEGSSSVWSREQDKAFENALANYPEDSSDRWEKIAVDVPGKTMEEIKHHYELLVEDINRIESGCVPLPRYNSSSEGSVSHAGNEGTGKKGGHVGHYNSESNQGSKPSRSDQERRKGIAWTEDEHRLFLLGLNKYGKGDWRSISRNFVITRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGNGDISAPQGPITGQVNGSVAGGSSGKTAKPPPQHPAGPPGVGMYGAPTIGQPIGGPLVSAVGTPVNLPPPAQMAYGIRAPVPGAVVPGAPMNMAPMTYPMPHTTAHR 296
BLAST of XM_017364428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1VI51 ((Transcription factor DIVARICATA {ECO:0000313|EMBL:KAB1212451.1}))
HSP 1 Score: 419.468 bits (1077), Expect = 1.324e-146
Identity = 218/296 (73.65%), Postives = 243/296 (82.09%), Query Frame = 0
Match: A0A6A1VI51 ((Transcription factor DIVARICATA {ECO:0000313|EMBL:KAB1212451.1}))
HSP 1 Score: 419.468 bits (1077), Expect = 1.324e-146
Identity = 218/296 (73.65%), Postives = 243/296 (82.09%), Query Frame = 0
Query: 1 MSGNESGDSSIWSREQDIMFENALATYSEDLSDRWEKIAADVPGKSLEEVRDHYELLVDDVNRIESGCVPLPRYNSSSSGSIGQAGNEGTGKKGGSFGNFNSESNHNGKALKSEQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITNVNNGEMPVSPTPITGQTNGSSAGGSSGKPIKQTPQLVAPGV---MYGGTTIGQPVGGSLVA--GTPVNLSQPAHMGYSMIAP-SGQLVPGAPVNMGPMAYPLPQTSTHR 290
M+ E+G SSIWSREQD FENALAT+ ED SDRWEKIAADVPGK+LEE++ HYELLVDDVN+IESGCVPLP YNSS GS G+EGTGKKGG G++NSESNH KA +S+QERRKGIAWTE+EHRLFLLGL+KYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT+V NG++ PITGQTNG S+GG+SGK KQ PQ A V MYG TIGQP+GGSLV+ GTPVNLS HM Y + AP G +VPGAP+NM PMAYP+P TS HR
Sbjct: 1 MTVEEAGSSSIWSREQDKAFENALATHPEDASDRWEKIAADVPGKTLEEIKHHYELLVDDVNQIESGCVPLPSYNSSLEGSSSHTGDEGTGKKGGHSGHYNSESNHGSKASRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGNGDVSTPQGPITGQTNGGSSGGTSGKATKQPPQPPAGSVGVGMYGTPTIGQPIGGSLVSAVGTPVNLSTGPHMAYGVRAPVPGVVVPGAPMNMSPMAYPMPHTSAHR 296
BLAST of XM_017364428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3I6D4 ((Uncharacterized protein {ECO:0000313|EMBL:OMO78162.1}))
HSP 1 Score: 419.083 bits (1076), Expect = 2.047e-146
Identity = 212/297 (71.38%), Postives = 241/297 (81.14%), Query Frame = 0
Match: A0A1R3I6D4 ((Uncharacterized protein {ECO:0000313|EMBL:OMO78162.1}))
HSP 1 Score: 419.083 bits (1076), Expect = 2.047e-146
Identity = 212/297 (71.38%), Postives = 241/297 (81.14%), Query Frame = 0
Query: 1 MSGNESGDSSIWSREQDIMFENALATYSEDLSDRWEKIAADVPGKSLEEVRDHYELLVDDVNRIESGCVPLPRYNSSSSGSIGQAGNEGTGKKG-GSFGNFNSESNHNGKALKSEQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITNVNNGEMPVSPTPITGQTNGSSAGGSSGKPIKQTPQ--LVAPGV-MYGGTTIGQPVGGSLVA--GTPVNLSQPAHMGYSMIAP-SGQLVPGAPVNMGPMAYPLPQTSTHR 290
M+ +E+G S WSREQD FENALATY ED SDRWEKIAADVPGK+LEE++ HYELL DDV+RIESGCVPLP YNS GS G AG+E TGKKG G+ G++N ESNH K +S+QERRKGIAWTE+EHRLFLLGL+KYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT+V NG++ PITGQ+NG++ G S+GK KQ PQ APGV MYG TIGQP+GG LV+ GTPVNL PAHM Y + AP G +VPGAP+NMGP+ YP+P TS HR
Sbjct: 1 MTVDEAGSSLEWSREQDKAFENALATYPEDASDRWEKIAADVPGKTLEEIKKHYELLEDDVSRIESGCVPLPSYNSD--GSAGHAGDEVTGKKGSGNLGHYNGESNHGSKNSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGNGDISAPQGPITGQSNGAATGASNGKSAKQPPQHPTAAPGVGMYGAPTIGQPIGGPLVSAVGTPVNLPTPAHMAYGVRAPVPGAVVPGAPMNMGPVTYPMPHTSAHR 295
BLAST of XM_017364428.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3GW48 ((Uncharacterized protein {ECO:0000313|EMBL:OMO62355.1}))
HSP 1 Score: 419.083 bits (1076), Expect = 2.064e-146
Identity = 212/296 (71.62%), Postives = 241/296 (81.42%), Query Frame = 0
Match: A0A1R3GW48 ((Uncharacterized protein {ECO:0000313|EMBL:OMO62355.1}))
HSP 1 Score: 419.083 bits (1076), Expect = 2.064e-146
Identity = 212/296 (71.62%), Postives = 241/296 (81.42%), Query Frame = 0
Query: 1 MSGNESGDSSIWSREQDIMFENALATYSEDLSDRWEKIAADVPGKSLEEVRDHYELLVDDVNRIESGCVPLPRYNSSSSGSIGQAGNEGTGKKG-GSFGNFNSESNHNGKALKSEQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITNVNNGEMPVSPTPITGQTNGSSAGGSSGKPIKQTPQL-VAPGV-MYGGTTIGQPVGGSLVA--GTPVNLSQPAHMGYSMIAP-SGQLVPGAPVNMGPMAYPLPQTSTHR 290
M+ +E+G S WSREQD FENALATY ED SDRWEKI ADVPGK+LEE++ HYELL DDV+RIESGCVPLP YNS GS G AG+EGTGKKG G+ G++N ESNH K +S+QERRKGIAWTE+EHRLFLLGL+KYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT+V NG++ PITGQ+NG++AG S+GK KQ PQ A GV MYG TIGQP+GG LV+ GTPVNL PAHM Y + AP G +VPGAP+NMGP+ YP+P TS HR
Sbjct: 1 MTVDEAGSSLEWSREQDKAFENALATYPEDASDRWEKITADVPGKTLEEIKKHYELLEDDVSRIESGCVPLPSYNSD--GSAGHAGDEGTGKKGSGNLGHYNGESNHGSKNSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGNGDISAPQGPITGQSNGAAAGASNGKSAKQPPQHPAAAGVGMYGAPTIGQPIGGPLVSAVGTPVNLPTPAHMAYGVRAPVPGAVVPGAPMNMGPVTYPMPHTSAHR 294
| Match Name | Stats | Description |
|---|---|---|
| A0A6P6V383 | E-Value: 3.245e-150, PID: 73.40 | (transcription factor SRM1-like {ECO:0000313|RefSe... [more] |
| A0A068VFI4 | E-Value: 3.245e-150, PID: 73.40 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1845... [more] |
| A0A5B7BJT3 | E-Value: 1.091e-148, PID: 73.56 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6806... [more] |
| A0A7N2KK72 | E-Value: 4.851e-148, PID: 72.30 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A6I9SL13 | E-Value: 2.193e-147, PID: 72.30 | (transcription factor SRM1 {ECO:0000313|RefSeq:XP_... [more] |
| A0A7J7CV03 | E-Value: 4.251e-147, PID: 70.10 | (Transcription factor DIVARICATA {ECO:0000313|EMBL... [more] |
| A0A1Q3B3I3 | E-Value: 4.998e-147, PID: 70.95 | (Myb_DNA-binding domain-containing protein {ECO:00... [more] |
| A0A6A1VI51 | E-Value: 1.324e-146, PID: 73.65 | (Transcription factor DIVARICATA {ECO:0000313|EMBL... [more] |
| A0A1R3I6D4 | E-Value: 2.047e-146, PID: 71.38 | (Uncharacterized protein {ECO:0000313|EMBL:OMO7816... [more] |
| A0A1R3GW48 | E-Value: 2.064e-146, PID: 71.62 | (Uncharacterized protein {ECO:0000313|EMBL:OMO6235... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |