XM_017363281.1

Resource Type: 
Polypeptide
Name: 
XM_017363281.1
Identifier: 
XM_017363281.1-protein
Sequence: 
MANEPIDISSSSESWDLEADESIVDDSVTSAGLRRLPSWADFAGTSSAVN
GGTSYKSNSRVSTSNGNVWNPGHQNHVGTDHGRLSSKAHSRTTIPNGSSS
HGFGQHLYGQVLKRSLAPSLKPHVHGSTYSIGNLGSSQIRESYARSYPAQ
GVPNQLENQLEKDCDDDLVMYDKNGSLPMPKPFMPRTYPSTAQHSSSAGP
GLHSGAGKEQYGEYDERLIYQAALQDLNQPKAEATYPDGLLSVSLLKHQR
IALSWMLQKEKSVCCSGGFLADDQGLGKTISMIALIQIQKLLQSKSKSED
VSDKRAEALNLDDDEENDANAFEKCKQDEDSHDLILIPEASTSSRNIQPK
RPQAGTLVVCPASVLRQWDRELKEKVDDKAKLRVLIYHGSNRTKDPVELA
KYDVVLTTYAIVANEVPQTSGDDEDQNKKNMENSGLISDFSCNNKRKRKT
HAGKKSKKAKKGIEISCIDSDCGTLAKVRWLRVILDEAQTIKNHRTQVAR
ACAGFKAKSRWCLSGTPIQNSIDDLFSYFRFLKYDPYTTYKSFCSKLKNP
ISRDSVQGYKKLYAVLSAVMLRRTKGTFIDGEPIIRLPRKTINLIQAEFS
EEERDFYKELEANSLSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLL
GMGVKSDSIGRDSVQMVKNLPRDMLINLMKHLDPFSAICCVCNDPPEDAV
VTMCGHVFCYQCVSEYLRGDENTCPSYECKELLGHDVVFSKDTLRSCLHG
NDHHDFGPSSEKPLVLQKGYRSSKVKAAMEILQSHCKSNNACSQLHNIVG
HSDISSSRGKETAESVGSIVEFTNTKACSDAHTEAPKKAIVFSQWTGMLD
LVEISLNHSDLRYRRLDGTMTLSARDKAVKEFNNDPEVTVMLMSLKAGNL
GLNMVAATHVVLLDLWWNPTTEDQAIDRAHRIGQTRPVTVSRLTIKNTIE
ERILALQDDKRKMVASAFGEDQSGGSGNRLTVEDLRFLFMGKQ
Sequence Length: 
993
Sequence Checksum: 
4966e888ad7cb0d61b7e98299a5e8e04
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017363281.1, derives from mRNA, XM_017363281.1.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017363281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017363281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GFE3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5939470.1}))

HSP 1 Score: 1138.25 bits (2943), Expect = 0.000e+0
Identity = 592/990 (59.80%), Postives = 725/990 (73.23%), Query Frame = 0
 
Query:   21 ESIVDDSVTSAGLRRLPSWADFAGTSSAVNGGTSYKSN--SRVSTSNGNVWNPGHQNHV-------GTDHGRLSSKAHSRTTIPNGSSSHGFGQHLYGQVLKRSLAPSLKPHVHGSTYS--IGNLGSSQIRESYARS----YPAQGVPNQLENQLEKDCDDDLVMYDKNGSLPMPKPFMPRTYPSTAQHSSSAGPGLHSGAGKEQYGEYDERLIYQAALQDLNQPKAEATYPDGLLSVSLLKHQRIALSWMLQKE-KSVCCSGGFLADDQGLGKTISMIALIQIQKLLQSKSKSEDVSDKRAEALNLDDDEENDANAFEKCKQDEDSHDLILIPEASTSSRNIQPKRPQAGTLVVCPASVLRQWDRELKEKVDDKAKLRVLIYHGSNRTKDPVELAKYDVVLTTYAIVANEVP-QTSGDDEDQNKKNMENSGLISDFSCNNKRKRKTHAGKKSKKAKKGIEISCIDSDCGTLAKVRWLRVILDEAQTIKNHRTQVARACAGFKAKSRWCLSGTPIQNSIDDLFSYFRFLKYDPYTTYKSFCSKLKNPISRDSVQGYKKLYAVLSAVMLRRTKGTFIDGEPIIRLPRKTINLIQAEFSEEERDFYKELEANSLSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLGMGVKSDSIGRDSVQMVKNLPRDMLINLMKHLDPFSAICCVCNDPPEDAVVTMCGHVFCYQCVSEYLRGDENTCPSYECKELLGHDVVFSKDTLRSCLHGNDHHDFGPSSEKP---LVLQKGYRSSKVKAAMEILQSHCKSNNACSQLHNIVGHSDISSSRGKETAESVGSIVEFTNTKACSDAHTEAPKKAIVFSQWTGMLDLVEISLNHSDLRYRRLDGTMTLSARDKAVKEFNNDPEVTVMLMSLKAGNLGLNMVAATHVVLLDLWWNPTTEDQAIDRAHRIGQTRPVTVSRLTIKNTIEERILALQDDKRKMVASAFGEDQSGGSGNRLTVEDLRFLFM 990
            ES++ ++  SA    + S     G +S    G S +     +  TSNG+  N  H            +++ R S+    +    N S  + + +    Q LKR+L  S++     S  S  + N+ SSQIR++  +S    +P       +E+   +  DD++++Y+ NG+  +P   M     ST+Q+ SS+ P    G  +E+    DERLIYQAALQDLNQPK EAT PDGLLSVSLL+HQ+IAL+WMLQKE +S+ C GG LADDQGLGKTIS+IAL+Q+Q+ LQSKSK E  SD + EALNLDDD+EN +   EK KQ  +S D+ LIPEA+TS   +  +RP AGTLVVCPASVLRQW REL +KV D+AKL VLIYHGSNRTKDP++LAKYDVVLTTYAIV NEVP Q   D++D+++KN E  GL S+FS N KRK+  + GK+ KK + GI+ S IDSDCG LA+V W RV+LDEAQTIKNHRTQVARAC G +AK RWCLSGTPIQN+ID+L+SYFRFLKYDPY  YKSFC+ +K PISR+S+ GYKKL AVL A+MLRRTKGT IDGEPIIRLP KTI+L + +FS EER FY +LEA+S SQFKAYAAAGT+NQNYANILLMLLRLRQACDHPLL  G  S+ +  DS+ + K +PR+ LINL+  L+   AIC  C+DPPEDAVVTMCGHVFCYQCVSEY+ GD+N CP+ +CK+ +G DVVFSK  LR C+  +  ++   SSE P   ++L+  Y SSK++A +EILQ HCKS +  S+ HN+V  +  SS  GK  ++S  S V    T    D   E P KAIVFSQWT MLDLV+I+LN S LRYRRLDGTMTLSARD+AVKEFN DPEVTVMLMSLKAGNLGLNMVAA HV+LLDLWWNP TEDQAIDRAHRIGQTRPVTVSR+TIK+T+E+RILALQ++KRKMVASAFGEDQSGGSG RLTVEDL++LFM
Sbjct:  230 ESLLRETADSANHEIISSRDSAVGATSRGRVGPSQEVPFPMKAITSNGSSSNVDHHTEANLRLHPSSSEYVRASNWHTMQADNSNYSKENDYKKLSSQQALKRTLPNSIQASAQSSRSSNLVENVSSSQIRDARGKSHHYAWPNLAKKIHMEDHFGRSIDDEVIVYENNGNRILPPSLMHGKSVSTSQYISSSDPTPRPGLVEERAVGSDERLIYQAALQDLNQPKVEATLPDGLLSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISVIALVQMQRFLQSKSKPEGQSDHKPEALNLDDDDENGSATLEKGKQTGESDDVKLIPEATTSISELSRRRPAAGTLVVCPASVLRQWARELDDKVADEAKLSVLIYHGSNRTKDPLQLAKYDVVLTTYAIVTNEVPKQPLVDEDDEDQKNGEKYGLSSEFSANKKRKKTFNVGKRGKKGRNGIDSSVIDSDCGALARVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNAIDELYSYFRFLKYDPYAVYKSFCNTIKYPISRNSIHGYKKLQAVLRAIMLRRTKGTLIDGEPIIRLPPKTIHLTKVDFSPEERAFYAKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKGFSSEPVRSDSLDLAKRIPREKLINLLNLLETSLAICRYCSDPPEDAVVTMCGHVFCYQCVSEYMTGDDNMCPAPDCKKQVGVDVVFSKAILRRCISEDPDNNLSSSSEFPGKSIILKNEYSSSKIRATLEILQKHCKSKSPTSESHNLVRCNGDSSYSGKAFSDSSHSGVG-AATVVDLDTEPEGPIKAIVFSQWTSMLDLVQIALNQSCLRYRRLDGTMTLSARDRAVKEFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPATEDQAIDRAHRIGQTRPVTVSRITIKDTVEDRILALQEEKRKMVASAFGEDQSGGSGTRLTVEDLKYLFM 1218    
BLAST of XM_017363281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BEX3 ((Uncharacterized protein {ECO:0000313|EMBL:MPA66786.1}))

HSP 1 Score: 1135.94 bits (2937), Expect = 0.000e+0
Identity = 612/988 (61.94%), Postives = 736/988 (74.49%), Query Frame = 0
 
Query:   17 LEADESIVDDSVTSAGLRRLPSWADFAGTSSAVNGGTSYKSNSRVSTSNGNVWNPGHQNHVGTDHGRLSSKAHSRTTIPNGSSSHGFGQHLYGQVLKRSLAPSLKPHVHGSTYS--IGNLGSSQIRESYARSYPAQ-----GVPNQLENQLEKDCDDDLVMYDKNGSLPMPKPFMPRTYPSTAQHSSSAGPGLHSGAGKEQYGEYDERLIYQAALQDLNQPKAEATYPDGLLSVSLLKHQRIALSWMLQKEK-SVCCSGGFLADDQGLGKTISMIALIQIQKLLQSKSKSEDVSDKRAEALNLDDDEENDANAFEKCKQDEDSHDLILIPEASTSSRNIQPKRPQAGTLVVCPASVLRQWDRELKEKVDDKAKLRVLIYHGSNRTKDPVELAKYDVVLTTYAIVANEVP-QTSGDDEDQNKKNMENSGLISDFSCNNKRKRKTHAGKKSKKAKKGIEISCIDSDCGTLAKVRWLRVILDEAQTIKNHRTQVARACAGFKAKSRWCLSGTPIQNSIDDLFSYFRFLKYDPYTTYKSFCSKLKNPISRDSVQGYKKLYAVLSAVMLRRTKGTFIDGEPIIRLPRKTINLIQAEFSEEERDFYKELEANSLSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLGMGVKSDSIGRDSVQMVKNLPRDMLINLMKHLDPFSAICCVCNDPPEDAVVTMCGHVFCYQCVSEYLRGDENTCPSYECKELLGHDVVFSKDTLRSCLHGNDHHDFGPSS-----EKPLVLQKGYRSSKVKAAMEILQSHCKSNNACSQLHNIVGHSDISSSRGKETAESVGSIVEFTNTKACSDAHTEAPKKAIVFSQWTGMLDLVEISLNHSDLRYRRLDGTMTLSARDKAVKEFNNDPEVTVMLMSLKAGNLGLNMVAATHVVLLDLWWNPTTEDQAIDRAHRIGQTRPVTVSRLTIKNTIEERILALQDDKRKMVASAFGEDQSGGSGNRLTVEDLRFLFM 990
            +E D S + +S  SAG R LP WA   GT+    GG S   +S    S  N  +  + +   TD  R ++   ++  I      + +G+H   Q LKR+L  S +P V  +  S  + N GSSQIR+S+ ++Y ++        N +++ L +  DD+++MY+ N S  +P   M     ST Q+ SS+ P   SG G+E+    DERLIYQAALQDLNQPK EAT PDGLLSVSLL+HQ+IAL+WMLQKE  S+ C GG LADDQGLGKT+S IALIQ+Q+ LQSKSKSED+ +++ EALNLDDD++N + A +K KQ  +S D  LIPE +TS R  + +RP AGTLVVCPAS+LRQW REL +KV D+AKL VL+YHGSNRTKDPVELAKYDVVLTTYAIV NEVP Q   D++D ++KN E  GL S+F+ N KRK+ ++  K+ KK KKGIE S ID DCG LA+V W RV+LDEAQTIKNHRTQVARAC G +AK RWCLSGTPIQN+ID+L+SYFRFLKYDPY  YKSFC+ +K PISR+S+ GYKKL AVL A+MLRRTKGT IDGEPII LP KT++L + +FS EER FY +LEA+S SQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLL  G  SDS+G+ S +M K LPRDMLINL+  L    AIC  CNDPPEDAVVTMCGHVFCYQCVS+YL GD+NTCP+ ECKE LG DVVFSK TL+SC+  +D  D  PSS     EK +VL+  Y SSK++A +EILQSHC S    S+LH++V        R   T           +T   SD+  E P KAIVFSQWT MLDLVEISLN S L+YRRLDGTMTL++RD+AVKEFN DPEVTVMLMSLKAGNLGLNMVAA+HV+LLDLWWNPTTEDQA+DRAHRIGQTRPVTVSR+TIK+T+E+RILALQ++KRKMVASAFGEDQSGG+  RLTVEDL++LFM
Sbjct:   25 VEPDASPLRESAASAGPRILPQWASAHGTNLRGYGGLSETVSSPKRASASNGSSSNNHHARATDDVRATNWHIAQLDISKYPIENDYGKHSSQQALKRTLLTSFQPSVPSARSSNLVENAGSSQIRDSHGKAYHSEWPNLTNSKNYMKDHLGRGSDDEVIMYENNRSRILPPSLMHGKSVSTTQYISSSDPVYRSGVGEERDAGNDERLIYQAALQDLNQPKVEATLPDGLLSVSLLRHQKIALAWMLQKETASLHCLGGILADDQGLGKTVSTIALIQMQRSLQSKSKSEDLCNQKTEALNLDDDDDNGSIAPDKAKQIGESDDSKLIPEVNTSIREFRRRRPAAGTLVVCPASILRQWARELDDKVADEAKLSVLVYHGSNRTKDPVELAKYDVVLTTYAIVTNEVPKQPLVDEDDDDQKNGEKYGLSSEFT-NKKRKKTSNVSKRGKKGKKGIESSAIDCDCGALARVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNAIDELYSYFRFLKYDPYAAYKSFCNTIKIPISRNSIHGYKKLQAVLRAIMLRRTKGTLIDGEPIINLPPKTVHLTKVDFSTEERAFYSKLEADSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLVKGFNSDSVGKVSSEMAKRLPRDMLINLLNLLQNSLAICHACNDPPEDAVVTMCGHVFCYQCVSDYLTGDDNTCPAPECKEQLGVDVVFSKATLKSCI--SDDLDSNPSSSSDFAEKSIVLKNEYSSSKIRAVLEILQSHCISKGPNSELHSLV--------RCNGT----------KHTTVYSDSQNEGPVKAIVFSQWTSMLDLVEISLNQSCLQYRRLDGTMTLNSRDRAVKEFNTDPEVTVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVSRITIKDTVEDRILALQEEKRKMVASAFGEDQSGGTATRLTVEDLKYLFM 991    
BLAST of XM_017363281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834L511 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7113913.1}))

HSP 1 Score: 1100.89 bits (2846), Expect = 0.000e+0
Identity = 598/1029 (58.11%), Postives = 732/1029 (71.14%), Query Frame = 0
 
Query:    2 ANEPIDISSSSES---WDLEADESIVD------DSVTSAGLRRLPSWADFAGTSSAVNGGTSYKSNSRVSTSNGNV--------------WNPGHQNHVGTDHGRLSSKAHSRTTIPNGSSSHGFGQHLY-----GQVLKRSLAPSLKPHVHGSTYS--IGNLGSSQIRESYARS--YPAQGVPNQL--ENQLEKDCDDDLVMYDKNGSLPMPKPFMPRTYPSTAQHSSSAGPGLHSGAGKEQYGEYDERLIYQAALQDLNQPKAEATYPDGLLSVSLLKHQRIALSWMLQKEK-SVCCSGGFLADDQGLGKTISMIALIQIQKLLQSKSKSEDVSDKRAEALNLDDDEENDANAFEKCKQDEDSHDLILIPEASTSSRNIQPKRPQAGTLVVCPASVLRQWDRELKEKVDDKAKLRVLIYHGSNRTKDPVELAKYDVVLTTYAIVANEVP-QTSGDDEDQNKKNMENSGLISDFSCNNKRKRKTHAGKKSKKAKKGIEISCIDSDCGTLAKVRWLRVILDEAQTIKNHRTQVARACAGFKAKSRWCLSGTPIQNSIDDLFSYFRFLKYDPYTTYKSFCSKLKNPISRDSVQGYKKLYAVLSAVMLRRTKGTFIDGEPIIRLPRKTINLIQAEFSEEERDFYKELEANSLSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLGMGVKSDSIGRDSVQMVKNLPRDMLINLMKHLDPFSAICCVCNDPPEDAVVTMCGHVFCYQCVSEYLRGDENTCPSYECKELLGHDVVFSKDTLRSCLHGNDHHDFGPSSEKP---LVLQKGYRSSKVKAAMEILQSHCKSNNACSQLHNIVGHSDISSSRGKETAESVGSIVEFTNTKACSDAHTEAPKKAIVFSQWTGMLDLVEISLNHSDLRYRRLDGTMTLSARDKAVKEFNNDPEVTVMLMSLKAGNLGLNMVAATHVVLLDLWWNPTTEDQAIDRAHRIGQTRPVTVSRLTIKNTIEERILALQDDKRKMVASAFGEDQSGGSGNRLTVEDLRFLFMG 991
            A E I+I+SS      WDLE    I+D      DS +SA  R LP W    GT+S  + G S + +SR  +S  N                +P    +VG  +   +S  +S+           + +++Y      QVLKR+L  SL+P   GS  S  + N+   Q+ +++ +S  +P   +P     ++Q  +  DDD++ YD  G+  +P+  M     S  Q+ S   P    G G+E+    DERLIYQAALQDLNQPK EA  PDGLLSVSLL+HQ+IAL+WMLQKE  S+ C GG LADDQGLGKTIS+IALIQ+Q+ LQSKSK+E   + +AEALNLDDD++N + A +K KQ  +S D+  IPE +TS+   + +RP AGTLVVCPA+VLRQW RELK+KV D+A+L VLIYHG NRTKDP+ELAKYDVVLTTYAIV NEVP Q   D++D   KN E  G+ S+FS N KRK   +  KK KK K G +IS IDS CG LA+V W RV+LDEAQTIKNHRTQVARAC G +AK RWCLSGTPIQN+ID+L+SYFRFLKYDPY  YKSFC ++K PI+R+S+ GYKKL AVL A+MLRRTKGT IDGEPII LP KTI+L + +FS EER FY +LE++S SQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLL  G  SD + RDS++  K LPRDML+NL+  LD   AIC +C+DPPEDAV+TMCGHVFCYQCVSE L GD+N CP+++CKE +G +VVFSK TLRSC+  +       SSE P   +VL+  Y SSK++A +EILQSH KS    ++ H++V  +  SS  GK  A S  S    +     S++ TE P KAI+FSQWT MLDLVE+SLN   ++YRRLDGTMTL ARD+AVKEFN  PEVTVMLMSLKAGNLGLNMVAA HV+LLDLWWNPTTEDQAIDRAHRIGQTRPVTVSR+T+K+T+E+RILALQ++KRKMVASAFGED SGGS  RLTVEDL++LF  
Sbjct:   92 AGEAIEITSSGSDSSSWDLEEYREILDAPSPLKDSASSANHRVLPQWDSAVGTTSRGHVGPSQQVSSRKRSSTTNGSSSNVDRHAESKLQMHPSSSKYVGASNQHATSAENSKY----------YKENVYEKLPSQQVLKRTLPTSLQPFPPGSRSSNFVENVSHGQVHDTHGKSHHFPWPNLPTSKSHKDQFGRSIDDDVIAYDNRGNRILPQSLMHGKSVSNTQYVSYNDPIPRPGLGEERAVGSDERLIYQAALQDLNQPKVEANLPDGLLSVSLLRHQKIALAWMLQKEAASLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEGECNHKAEALNLDDDDDNGSIAPDKGKQPAESDDVKSIPEVTTSNSEFRRRRPAAGTLVVCPATVLRQWSRELKDKVADEAELSVLIYHGGNRTKDPLELAKYDVVLTTYAIVTNEVPKQPLVDEDDDEHKNGEKYGISSEFS-NKKRKSTANVSKKRKKGKNGYDISAIDSACGALARVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNAIDELYSYFRFLKYDPYAAYKSFCQQIKFPIARNSIHGYKKLQAVLRAIMLRRTKGTLIDGEPIISLPPKTIHLTKVDFSPEERAFYAKLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLVKGFTSDPVERDSLETAKRLPRDMLVNLLNVLDTSLAICQLCSDPPEDAVITMCGHVFCYQCVSECLTGDDNMCPAHKCKEQIGSNVVFSKATLRSCISEDPGSSALASSEFPEKSIVLKNEYSSSKIRAIIEILQSHSKSKRPKAESHDLVRCNGDSSYLGK--AHSKSSHSGGSPETIDSESETEDPIKAIIFSQWTSMLDLVELSLNQYSIKYRRLDGTMTLVARDRAVKEFNTYPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVSRMTVKDTVEDRILALQEEKRKMVASAFGEDPSGGSTTRLTVEDLKYLFFA 1107    
BLAST of XM_017363281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2KK38 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL01p000485:mrna}))

HSP 1 Score: 1097.8 bits (2838), Expect = 0.000e+0
Identity = 593/1037 (57.18%), Postives = 726/1037 (70.01%), Query Frame = 0
 
Query:    6 IDISSSSESWDLEADESIVDDSVTSAGLRRLPSWADFAGTSSAVNGGTS----YKSNSRVSTSNGNVWN------PGHQNHVGTDHGRLSSKAHSRTTIPNGSSSHGFG-----QHLYG---------QVLKRSLAPSLKPHVHGSTYS--IGNLGSSQIRESYARSYPAQG--VPN---QLENQLEKDCDDDLVMYDKNGSLPMPKPFMPRTYPSTAQHSSSAGPGLHSGAGKEQYGEYDERLIYQAALQDLNQPKAEATYPDGLLSVSLLKHQRIALSWMLQKEKSVC-CSGGFLADDQGLGKTISMIALIQIQKLLQSKSKSEDVSDKRAEALNLDDDEENDA-----------------NAFEKCKQDEDSHDLILIPEASTSSRNIQPKRPQAGTLVVCPASVLRQWDRELKEKVDDKAKLRVLIYHGSNRTKDPVELAKYDVVLTTYAIVANEVP-QTSGDDEDQNKKNMENSGLISDFSCNNKRKRKTHAGKKSKKAKKGIEISCIDSDCGTLAKVRWLRVILDEAQTIKNHRTQVARACAGFKAKSRWCLSGTPIQNSIDDLFSYFRFLKYDPYTTYKSFCSKLKNPISRDSVQGYKKLYAVLSAVMLRRTKGTFIDGEPIIRLPRKTINLIQAEFSEEERDFYKELEANSLSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLGMGVKSDSIGRDSVQMVKNLPRDMLINLMKHLDPFSAICCVCNDPPEDAVVTMCGHVFCYQCVSEYLRGDENTCPSYECKELLGHDVVFSKDTLRSCLHGN-DHHDFGPS-SEKPLVLQKGYRSSKVKAAMEILQSHCKSNNACSQLHNIVGHSDISSSRGKETAESVGSIVEFTNTKACSDAHTEAPKKAIVFSQWTGMLDLVEISLNHSDLRYRRLDGTMTLSARDKAVKEFNNDPEVTVMLMSLKAGNLGLNMVAATHVVLLDLWWNPTTEDQAIDRAHRIGQTRPVTVSRLTIKNTIEERILALQDDKRKMVASAFGEDQSGGSGNRLTVEDLRFLFM 990
            IDISSS +  DLE+ E+   D   SA  R LP WA   G +S+    +       S  R   SNG+  N      PG  ++    +  ++    S     NG+ S  +       +L G         Q LKR+L PSL+P    +  +  + N+GSSQ+R++Y  SY + G  V N    L +Q     +D+++MY+ +GS  +P   M     S+ Q +S++ P   S  G+++    DERL+YQAAL+DLNQPK EA  PDGLLSVSLL+HQ+IAL WMLQKE  +  C GG LADDQGLGKT+SMIALIQ+Q+ LQSKSKS+D+  K  EALNLD+D++N +                 N  +K K+ E+  DL    + S+S+R  + +RP AGTLVVCPASVLRQW REL EKV D+AKL VLIYHG NRTKDPVELAKYDVVLTTYAIV NEVP Q   D+ED ++KN E  GL S+FS + KRK+ ++  K+ KK +KGI+ S ID   G LA+V W RVILDEAQTIKNHRTQVARAC   +AK RWCLSGTPIQN+IDDL+SYFRFLKYDPY  YKSF + +K PIS++++ GYKKL AVL A+MLRRTKGT +DGEPII+LP KTI L + +FS EER FY  LEA+S S+FKAYAAAGT+NQNYANILLMLLRLRQACDHP L     SDS+G+ SV+M K LPRDMLINL+  L+   AIC VCNDPPED VVTMCGHVFCYQCVSEYL GD+NTCP++ CKE LG DVVFSK TL SCL  + D        +E  ++LQ  Y SSK++A +EIL+++CK       +H+ +  +  S S  KE AE+        +T   S+   E P K I+FSQWT MLDLVE SLN S ++YRRLDGTMTLSARD+AVK+FN DPEVTVMLMSLKAGNLGLNMVAA HV+LLDLWWNPTTEDQA+DRAHRIGQTRPVTV+R+TIK+T+E+RILALQ++KRKMVASAFGEDQ GG+  RLTVEDLR+LFM
Sbjct:    7 IDISSSDD--DLESWET---DGRGSANPRILPQWASTRGPNSSSTSYSVQSQKVASPKRAYASNGSSSNIDTYLVPGSSDNNRAPNQHIAEVDGSEYATVNGNESDSWTVNSRIANLSGAEYEKISSQQALKRTLPPSLQPSAPSTRLNNLVENVGSSQVRDAYGNSYHSAGPSVSNSKGHLRDQFSWGKNDEVMMYENSGSRILPPSLMHGKAISSNQFASTSDPLYRSMVGEDRNAGNDERLVYQAALEDLNQPKVEANLPDGLLSVSLLRHQKIALHWMLQKETRIFHCLGGILADDQGLGKTVSMIALIQMQRSLQSKSKSDDLCHK-TEALNLDEDDDNGSGGVDKAKEAVNLDDDDDNGVDKVKKSEEFDDL----KVSSSTREFRRQRPAAGTLVVCPASVLRQWARELDEKVADEAKLSVLIYHGGNRTKDPVELAKYDVVLTTYAIVTNEVPKQPLVDEEDADEKNGEIYGLSSEFSISKKRKKTSNVSKRGKKGRKGIDSSSIDYGSGALARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNALHGYKKLQAVLRAIMLRRTKGTLLDGEPIIKLPPKTIRLSKVDFSIEERAFYTNLEADSRSRFKAYAAAGTVNQNYANILLMLLRLRQACDHPFLVKDYNSDSVGKVSVEMAKRLPRDMLINLLNCLETSFAICRVCNDPPEDPVVTMCGHVFCYQCVSEYLTGDDNTCPAHACKEQLGSDVVFSKATLSSCLSADVDGSSMNSQFTENSMILQNVYSSSKIRAVLEILETNCK-------IHSSMECNGSSLSSEKEYAENCSGFSATKHTIVYSETPVEGPIKTIIFSQWTSMLDLVETSLNDSCIQYRRLDGTMTLSARDRAVKDFNADPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDQGGGTATRLTVEDLRYLFM 1026    
BLAST of XM_017363281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4FX82 ((helicase-like transcription factor CHR28 {ECO:0000313|RefSeq:XP_018836252.2, ECO:0000313|RefSeq:XP_018836259.2}))

HSP 1 Score: 1096.26 bits (2834), Expect = 0.000e+0
Identity = 596/1006 (59.24%), Postives = 719/1006 (71.47%), Query Frame = 0
 
Query:    6 IDISSSSESWDLEADESIVDDSVTSAGLRRLPSWADFAGTSSAVNGGTSYKSNSRVSTSNGNVWNPG---HQNHVGTDHGRLSSKAHSRTTIPNGSSSH-----GFGQHLYGQVLKRSLAPSLKPHVHGSTYS--IGNLGSSQIRESYARSYPAQG-----VPNQLENQLEKDCDDDLVMYDKNGSLPMPKPFMPRTYPSTAQHSSSAGPGLHSGAGKEQYGEYDERLIYQAALQDLNQPKAEATYPDGLLSVSLLKHQRIALSWMLQKE-KSVCCSGGFLADDQGLGKTISMIALIQIQKLLQSKSKSEDVSDKRAEALNLDDDEENDANAFEKCKQDEDSHDLILIPEASTSSRNIQPKRPQAGTLVVCPASVLRQWDRELKEKVDDKAKLRVLIYHGSNRTKDPVELAKYDVVLTTYAIVANEVPQTSGDDEDQNKKNMENSGLISDFSCNNKRKRKTHAGKKSKKAKKGIEISCIDSDCGTLAKVRWLRVILDEAQTIKNHRTQVARACAGFKAKSRWCLSGTPIQNSIDDLFSYFRFLKYDPYTTYKSFCSKLKNPISRDSVQGYKKLYAVLSAVMLRRTKGTFIDGEPIIRLPRKTINLIQAEFSEEERDFYKELEANSLSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLGMGVKSDSIGRDSVQMVKNLPRDMLINLMKHLDPFSAICCVCNDPPEDAVVTMCGHVFCYQCVSEYLRGDENTCPSYECKELLGHDVVFSKDTLRSCLHGNDHHDFGPS----SEKPLVLQKGYRSSKVKAAMEILQSHCKSNNACSQLHNIVGHSDISSSRGKETAESV-GSIVEFTNTKACSDAHTEAPKKAIVFSQWTGMLDLVEISLNHSDLRYRRLDGTMTLSARDKAVKEFNNDPEVTVMLMSLKAGNLGLNMVAATHVVLLDLWWNPTTEDQAIDRAHRIGQTRPVTVSRLTIKNTIEERILALQDDKRKMVASAFGEDQSGGSGNRLTVEDLRFLFM 990
            IDISSS E  DLE+ E+   D   S   R LP WA   GT+S   G +    N  V++ NG   + G   + N+   D       +   T  PN  S+       F  +  G  LKR+L PSL+P    +       N+G S + ++Y  SY + G         L +Q  +  +D++ +Y+ +G+  +P   M     S++Q  SS+        G+E+  E DERLIYQAAL+DLNQPK EAT PDGLLS+SLL+HQ+IAL+WMLQKE +S+ C GG LADDQGLGKTISMIALIQ+QK LQSK  SED+ + + EALNLDDD++N +    + K+ E+S  L  IPE STS+++ + +RP AGTLVVCPASVLRQW REL EKV D+AKL VL+YHG +RTKDPV LAKYDVVLTTYAIV NEVP+    +ED   +  E  GL ++F+ + KRK+ T+  K+ KK +KG++ S ID  CG LA+V W RVILDEAQTIKNHRTQVARAC   +AK RWCLSGTPIQN+IDDL+SYFRFLKYDPY  YKSF + +K PISR+S+ GYKKL AVL A+MLRRTKGT IDGEPII+LP KT++L +  FS EER FY +LEA+S SQFKAYAAAGT+NQNYANILLMLLRLRQACDHP L    KSDS+G+DS++M K LPRDMLINL+  L+   AIC VCNDPPED VVTMCGHVFCYQCVSEYL GD+NTCP+  CKE LG DVVFSK TL SCL  +D+ D  P     +E  LVLQ  Y SSK++A +EILQ+HCK N  CS   N       S S  K  AE+   S+    +T   S A  E   KAIVFSQWT MLDLVEISLN   ++YRRLDGTMTL ARD+AV++FN DPEVTVMLMSLKAGNLGLNMVAA HV+LLDLWWNPTTEDQA+DRAHRIGQTRPVTV+R+TIK+T+E+RILALQ++KRKMVASAFGEDQSGG   RLTVEDL++LFM
Sbjct:    4 IDISSSDE--DLESWET---DGRGSTASRALPLWASTQGTNSRATGYSVQSQN--VNSPNGASASNGKSSNANNYSRDKHHFHPGSSDTTGGPNHQSAQLDDYESFTNN--GNALKRTLPPSLQPITPSTRLRNLAENMGGSHVHDTYESSYHSAGPSATKSKGYLRDQFSRGKNDEVAVYENSGTRMLPPSLMHGKAISSSQFVSSSDASYRPMVGEERQTENDERLIYQAALEDLNQPKFEATLPDGLLSISLLRHQKIALAWMLQKETRSLHCMGGILADDQGLGKTISMIALIQMQKSLQSKPTSEDLCNHKTEALNLDDDDDNGSGGVVEVKKSEESDGLKPIPEVSTSTQSFRRQRPAAGTLVVCPASVLRQWARELDEKVADEAKLSVLVYHGGSRTKDPVALAKYDVVLTTYAIVTNEVPKQPLVEEDDADEKNEVYGLSAEFATDKKRKKTTNVTKRGKKGRKGMD-SSIDCGCGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIDDLYSYFRFLKYDPYAVYKSFYNTIKLPISRNSLHGYKKLQAVLRAIMLRRTKGTLIDGEPIIKLPPKTVHLTKVNFSTEERAFYTKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPFLVKDYKSDSVGKDSLEMAKKLPRDMLINLLNRLETSFAICHVCNDPPEDPVVTMCGHVFCYQCVSEYLTGDDNTCPASACKEQLGSDVVFSKATLSSCL--SDNVDGSPMNSQFTESSLVLQNEYSSSKIRAVLEILQTHCKMN--CSMECN-----GSSLSEEKAHAENFHSSVSAVKHTTVYSKAPAEGAIKAIVFSQWTSMLDLVEISLNQFCIQYRRLDGTMTLGARDRAVRDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDQSGGFATRLTVEDLKYLFM 990    
BLAST of XM_017363281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4L9I7 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9454295.1}) (Fragment))

HSP 1 Score: 1093.57 bits (2827), Expect = 0.000e+0
Identity = 600/1029 (58.31%), Postives = 732/1029 (71.14%), Query Frame = 0
 
Query:    2 ANEPIDISSSSES---WDLEADESIVD------DSVTSAGLRRLPSWADFAGTSSAVNGGTSYK--SNSRVSTSNGNVWN------------PGHQNHVGTDHGRLSSKAHSRTTIPNGSSSHGFGQHLY-----GQVLKRSLAPSLKPHVHGSTYS--IGNLGSSQIRESYARS--YPAQGVPNQL--ENQLEKDCDDDLVMYDKNGSLPMPKPFMPRTYPSTAQHSSSAGPGLHSGAGKEQYGEYDERLIYQAALQDLNQPKAEATYPDGLLSVSLLKHQRIALSWMLQKEK-SVCCSGGFLADDQGLGKTISMIALIQIQKLLQSKSKSEDVSDKRAEALNLDDDEENDANAFEKCKQDEDSHDLILIPEASTSSRNIQPKRPQAGTLVVCPASVLRQWDRELKEKVDDKAKLRVLIYHGSNRTKDPVELAKYDVVLTTYAIVANEVP-QTSGDDEDQNKKNMENSGLISDFSCNNKRKRKTHAGKKSKKAKKGIEISCIDSDCGTLAKVRWLRVILDEAQTIKNHRTQVARACAGFKAKSRWCLSGTPIQNSIDDLFSYFRFLKYDPYTTYKSFCSKLKNPISRDSVQGYKKLYAVLSAVMLRRTKGTFIDGEPIIRLPRKTINLIQAEFSEEERDFYKELEANSLSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLGMGVKSDSIGRDSVQMVKNLPRDMLINLMKHLDPFSAICCVCNDPPEDAVVTMCGHVFCYQCVSEYLRGDENTCPSYECKELLGHDVVFSKDTLRSCLHGNDHHDFGPSSEKP---LVLQKGYRSSKVKAAMEILQSHCKSNNACSQLHNIVGHSDISSSRGKETAESVGSIVEFTNTKACSDAHTEAPKKAIVFSQWTGMLDLVEISLNHSDLRYRRLDGTMTLSARDKAVKEFNNDPEVTVMLMSLKAGNLGLNMVAATHVVLLDLWWNPTTEDQAIDRAHRIGQTRPVTVSRLTIKNTIEERILALQDDKRKMVASAFGEDQSGGSGNRLTVEDLRFLFMG 991
            A E I+I+SS      WDLE    I+D      DS +SA  R LP W    GT+S    G S +  S  R S +NG+  N            P    +VG  +   +S  +S+           + +++Y      QVLKR+L  SL+P   GS  S  + N+   Q+ +++ +S  +P   +P     ++Q  +  DDD++ YD  G+  +P+  M     S   + S   P    G G+E+    DERLIYQAALQDLNQPK EA  PDGLLSVSLL+HQ+IAL+WMLQKE  S+ C GG LADDQGLGKTIS+IA+IQ+Q+ LQSKSK+E   + +AEALNLDDD++N + A +K KQ  +S D+  IPE +TS+   + +RP AGTLVVCPA+VLRQW RELK+KV D+A+L VLIYHG NRTKDP+ELAKYDVVLTTYAIV NEVP Q   D++D   KN E  G+ S+FS N KRK   +  KK KK KKG +IS IDS CG LA+V W RV+LDEAQTIKNHRTQVARAC G +AK RWCLSGTPIQNSID+L+SYFRFLKYDPY  YKSFC ++K PI+R+S+ GYKKL AVL A+MLRRTKGT IDGEPII LP KTI+L + +FS EER FY +LE++S SQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLL  G  SD + RDS++  K LPRDML+NL+  LD   AIC +C+DPPEDAV+TMCGHVFCYQCVSE L GD+N CP+++CKE +G +VVFSK TLRSC+  +       SSE P   +VL+  Y SSK++A +EILQSH KS    ++ H++V  +  SS  GK  A S  S    +     S++ TE P KAI+FSQWT MLDLVE+SLN   ++YRRLDGTMTL ARD+AVKEFN  PEVTVMLMSLKAGNLGLNMVAA HV+LLDLWWNPTTEDQAIDRAHRIGQTRPVTVSR+T+K+T+E+RILALQ++KRKMVASAFGED SGGS  RLTVEDL++LF  
Sbjct:   53 AGEAIEITSSGSDSSSWDLEEYREILDAPSPLKDSASSANHRVLPQWDSAVGTTSRGQVGPSQQVSSRKRSSATNGSSSNVDRRAESKLQMHPSSSKYVGASNRHATSAENSKY----------YKENVYEKLPSQQVLKRTLPTSLQPFPPGSRSSNFVENVSHGQVHDTHGKSHHFPWPNLPTNKSHKDQFGRSSDDDVIAYDNRGNRILPQSLMHGKSVSNTPYVSYNDPIPRPGLGEERAVGSDERLIYQAALQDLNQPKVEANLPDGLLSVSLLRHQKIALAWMLQKEAASLHCLGGILADDQGLGKTISIIAIIQMQRSLQSKSKTEGECNHKAEALNLDDDDDNGSIAPDKGKQPAESDDVKSIPEVTTSNSEFRRRRPAAGTLVVCPATVLRQWSRELKDKVADEAELSVLIYHGGNRTKDPLELAKYDVVLTTYAIVTNEVPKQPLVDEDDDEHKNGEKYGISSEFS-NKKRKSTANVSKKRKKGKKGFDISAIDSACGALARVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNSIDELYSYFRFLKYDPYAAYKSFCQQIKFPIARNSIHGYKKLQAVLRAIMLRRTKGTLIDGEPIISLPPKTIHLTKVDFSPEERAFYAKLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLVKGFTSDPVERDSLETAKRLPRDMLVNLLNVLDTSLAICQLCSDPPEDAVITMCGHVFCYQCVSECLTGDDNMCPAHKCKEQIGSNVVFSKATLRSCISEDPDSSALASSEFPEKSIVLKNEYSSSKIRAIIEILQSHSKSKRPNAESHDLVRCNGDSSYLGK--AHSKSSHSGGSPETIDSESETEDPIKAIIFSQWTSMLDLVEVSLNQYSIKYRRLDGTMTLVARDRAVKEFNTYPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVSRMTVKDTVEDRILALQEEKRKMVASAFGEDPSGGSTTRLTVEDLKYLFFA 1068    
BLAST of XM_017363281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7DU00 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5749845.1}))

HSP 1 Score: 1092.03 bits (2823), Expect = 0.000e+0
Identity = 594/1032 (57.56%), Postives = 717/1032 (69.48%), Query Frame = 0
 
Query:    4 EPIDISSSSESWDLEADESIVDDSVTSAGLRRLPSWADFAGTSSAVNGGTSYK-SNSRVSTSNGNVWN------------PGHQNHVGTDHGRLSSKAHSRTTIPNGSSSHGFGQ---------HLYG---------QVLKRSLAPSLKPH--VHGSTYSIGNLGSSQI----RESYARSYPA----QGVPNQLENQLEKDCDDDLVMYDKNGSLPMPKPFMPRTYPSTAQHSSSAGPGLHSGAGKEQYGEYDERLIYQAALQDLNQPKAEATYPDGLLSVSLLKHQRIALSWMLQKE-KSVCCSGGFLADDQGLGKTISMIALIQIQKLLQSKSKSEDVSDKRAEALNLDDDE-ENDANAFEKCKQDEDSHDLILIPEASTSSRNIQPKRPQAGTLVVCPASVLRQWDRELKEKVDDKAKLRVLIYHGSNRTKDPVELAKYDVVLTTYAIVANEVPQTSGDDEDQ-NKKNMENSGLISDFSCNNKRKRKTHAGKKSKKAKKGIEISCIDSDCGTLAKVRWLRVILDEAQTIKNHRTQVARACAGFKAKSRWCLSGTPIQNSIDDLFSYFRFLKYDPYTTYKSFCSKLKNPISRDSVQGYKKLYAVLSAVMLRRTKGTFIDGEPIIRLPRKTINLIQAEFSEEERDFYKELEANSLSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLGMGVKSDSIGRDSVQMVKNLPRDMLINLMKHLDPFSAICCVCNDPPEDAVVTMCGHVFCYQCVSEYLRGDENTCPSYECKELLGHDVVFSKDTLRSCLHGNDHHDFGPS-SEKPLVLQKGYRSSKVKAAMEILQSHCKSNNACSQLHNIVGHSDISSSRGKETAESVGSIVEFTNTKACSDAHTEAPKKAIVFSQWTGMLDLVEISLNHSDLRYRRLDGTMTLSARDKAVKEFNNDPEVTVMLMSLKAGNLGLNMVAATHVVLLDLWWNPTTEDQAIDRAHRIGQTRPVTVSRLTIKNTIEERILALQDDKRKMVASAFGEDQSGGSGNRLTVEDLRFLFM 990
            E IDISSS    ++E         +  +  R LP+W +   T+S   G  ++K   +    SNG   N            PG  + +   +  +S    S+    NGS    FGQ         ++ G         Q LKR+L  SL+P   ++ S  S+ N+ SS+I    R SY  + P+    +G  N L N    D  D+++M+D +GS  +P         S AQ + S+     S AG+E+  E DERLIYQAAL+DLNQPK E   PDGLLSVSLL+HQ+IAL+WMLQKE +S+ C GG LADDQGLGKTIS+IALIQ+QK LQSKSKSED+ D + EALNLDDD+ +N +   +K KQD +S D+  IPE STS R    KRP AGTLVVCPASVLRQW REL EKV D+AKL VL+YHG +RTKDPVELAKYDVVLTTYAIVANEVP+    DED+ ++KN E  GL S FS N KRK+ ++  K+ KK +K  + S ++ D G LAKV W RV+LDEAQTIKNHRTQVARAC   +AK RWCLSGTPIQN+IDDL+SYFRFL+YDPY  YKSF   +K PISR+S+ GYKKL AVL A+MLRRTKGT IDGEPII+LP K++ L + +FS+EER FY +LEA+S SQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLL  G  SDS  + S +M K LPRDMLI+L+  L+   A+C VCNDPPE+ VVT+CGHVFCYQCVSEYL GD+N CP+  CKE LG DVVFSK TLR+C+  +D        + K +V Q  Y SSK++A +EIL S CK  +  S LH               +AE  GS     +T   SD   E P KAIVFSQWTGMLDLVE+SL   D++YRRLDGTMTLSARD+AV+ FNND EV VMLMSLKAGNLGLNMVAA HV+LLDLWWNPTTEDQA+DRAHRIGQTRPVTV+R+TIK+T+E+RILALQ++KRKMVASAFGED SGG+  RLTVEDL++LFM
Sbjct:   52 ELIDISSSDSELEIEDVRGRHSSPIRESANRVLPAWPNTHDTNSRSTGSVAHKIPFTTAYASNGGSSNLKDHSLKKHQTLPGSSSDIRASNQLISQAEDSKYLTGNGS----FGQLRTVNSQIANVPGTNYEKLSSEQALKRTLPSSLQPSAPINKSNSSMENISSSKIGDFQRNSYHPAGPSSTSNKGYANNLYNS---DNTDEILMFDSSGSRIIPSSLTLGKSSSPAQFAGSSDHAYRSVAGEERNAESDERLIYQAALEDLNQPKVEVDLPDGLLSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISVIALIQMQKSLQSKSKSEDLCDLKTEALNLDDDDDQNGSAGMDKVKQDGESDDIKSIPEVSTSMRTFSRKRPAAGTLVVCPASVLRQWARELAEKVVDEAKLSVLLYHGGSRTKDPVELAKYDVVLTTYAIVANEVPKQPLVDEDEADEKNGEKYGLSSAFSTNKKRKKTSNVSKRGKKGRKADDSSSLEYDYGALAKVGWSRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYHTIKIPISRNSLTGYKKLQAVLRAIMLRRTKGTLIDGEPIIQLPPKSVCLSKVDFSKEERAFYTQLEADSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLVKGYNSDSDRKVSTEMAKQLPRDMLIDLLNRLETSLALCRVCNDPPEEPVVTICGHVFCYQCVSEYLTGDDNQCPARGCKEQLGEDVVFSKATLRNCISVDDVSYMDSQLAAKSIVTQNEYSSSKIRAVIEILLSQCKIKSPSSGLHG--------------SAECNGSSATI-HTTVSSDVPFEGPIKAIVFSQWTGMLDLVEMSLKQYDIQYRRLDGTMTLSARDRAVRGFNNDSEVAVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHSGGTATRLTVEDLKYLFM 1061    
BLAST of XM_017363281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RPX2 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8100825.1}))

HSP 1 Score: 1090.49 bits (2819), Expect = 0.000e+0
Identity = 594/1038 (57.23%), Postives = 731/1038 (70.42%), Query Frame = 0
 
Query:    6 IDISSSSESWDLEADESIV--DDSVTSAGLRRLPSWADFAGTSSAVNGGT--SYKSNS--RVSTSNGNVWN------------PGHQNHVG---------------TDHGRLSSKAHSRTTIPNGSSSHGFGQHLYGQVLKRSLAPSLKPHVHGSTYS--IGNLGSSQIRESYARSY--------PAQGVPNQLENQLEKDCDDDLVMYDKNGSLPMPKPFMPRTYPSTAQHSSSAGPGLHSGAGKEQYGEYDERLIYQAALQDLNQPKAEATYPDGLLSVSLLKHQRIALSWMLQKE-KSVCCSGGFLADDQGLGKTISMIALIQIQKLLQSKSKSEDVSDKRAEALNLDDDEE-NDANAFEKCKQDEDSHDLILIPEASTSSRNIQPKRPQAGTLVVCPASVLRQWDRELKEKVDDKAKLRVLIYHGSNRTKDPVELAKYDVVLTTYAIVANEVP-QTSGDDEDQNKKNMENSGLISDFSCNNKRKRKTHAGKKSKKAKKGIEISCIDSDCGTLAKVRWLRVILDEAQTIKNHRTQVARACAGFKAKSRWCLSGTPIQNSIDDLFSYFRFLKYDPYTTYKSFCSKLKNPISRDSVQGYKKLYAVLSAVMLRRTKGTFIDGEPIIRLPRKTINLIQAEFSEEERDFYKELEANSLSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLGMGVKSDSIGRDSVQMVKNLPRDMLINLMKHLDPFSAICCVCNDPPEDAVVTMCGHVFCYQCVSEYLRGDENTCPSYECKELLGHDVVFSKDTLRSCLHGNDHHDFGPSS----EKPLVLQKGYRSSKVKAAMEILQSHC--KSNNACSQLHNIVGHSDISSSRGKETAESVGSIVEFTNTKACSDAHTEAPKKAIVFSQWTGMLDLVEISLNHSDLRYRRLDGTMTLSARDKAVKEFNNDPEVTVMLMSLKAGNLGLNMVAATHVVLLDLWWNPTTEDQAIDRAHRIGQTRPVTVSRLTIKNTIEERILALQDDKRKMVASAFGEDQSGGSGNRLTVEDLRFLFMG 991
            IDI+SS        D+ +V  +D   S   R LPSWA    T+S   G +  S K NS  R   SNG+  N            PG  N++                TD+G +S      + I + S +  + +    Q L R+L PSL+P    +  +   GN GSSQ+R++Y  +Y         ++G P    +Q  +  +++++MY+ +G+  +P   M      + Q + S+ P   S AG+E+  E DERLIYQAAL+DLNQPK EAT PDGLLSV LL+HQ+IAL+WMLQKE +S+ C GG LADDQGLGKTISMIALIQ+QK L+SK KSED+ + + EALNLDDD++ N     +K K+ E+  DL  IPE S+S++    +RP AGTLVVCPASVLRQW REL EKV D+AKL VLIYHG +RTKDPVELAKYDVVLTTY+IV NEVP Q   +++D ++KN E  GL S+FS   KRK+ ++  K+ KK KK I+ S ID  CG LA+V W RVILDEAQTIKNHRTQVARAC   +AK RWCLSGTPIQN+IDDL+SYFRFLKYDPY  YKSF + +K PISR+S+ GYKKL AVL A+MLRRTKGT IDGEPII+LP KTI+L + +FS EERDFY +LEA+S S+FKAYAAAGT+NQNYANILLMLLRLRQACDHPLL    KSD +G+ S++M K LPRDML+NL+  L+   AIC VC+DPPE+ VVTMCGHVFCYQCVSEYL GD+NTCP+ ECKE LG +VVFSK TL SC   +D  +  P S    +  +V+Q  Y SSK++A ++IL++HC  +S   C+      G S  S +   E   S  S  E + +   S    E P KAIVFSQWT MLDLVE SLN + + YRRLDGTMTL ARD+AV++FN DPEVTVMLMSLKAGNLGLNMVAA HV+LLDLWWNPTTEDQA+DRAHRIGQTRPVTVSR+TIKNT+E+RILALQ++KRKMVASAFGEDQ+GGS  RLTVEDL++LF+ 
Sbjct:   67 IDITSS--------DDEVVSWEDDQRSPTSRILPSWAPTHSTNSRTTGFSVQSQKINSPKRAYASNGSSSNVNTHSQEKLHSHPGSSNNIRIPNRQIAQVEDSDYYTDNGNVSQPGTVNSRIASLSGA-DYEKISSQQALTRTLPPSLQPSAPITKLNSLAGNKGSSQVRDTYDSAYHSAGPSATSSKGYP---RDQFSRSKNEEVIMYENSGNRILPPSLMHGKATFSNQFAGSSDPSYRSMAGEERPAENDERLIYQAALEDLNQPKVEATLPDGLLSVPLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALIQMQKSLESKQKSEDLCNHKTEALNLDDDDDDNGTGGVDKVKKSEEFDDLKPIPEVSSSTQAFSRRRPAAGTLVVCPASVLRQWARELDEKVTDEAKLSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEEDDADEKNGEIYGLSSEFS-TKKRKKASNISKRGKKGKKEIDSSTIDGGCGALARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSLHGYKKLQAVLRAIMLRRTKGTLIDGEPIIKLPPKTIHLTKVDFSTEERDFYTKLEADSCSRFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYKSDFVGKVSLEMAKRLPRDMLVNLLNCLETSFAICRVCDDPPENPVVTMCGHVFCYQCVSEYLTGDDNTCPATECKERLGSEVVFSKATLSSCF--SDDVNGSPISSQLTQSSIVMQNEYSSSKIRAVLQILRTHCNMRSPIECN------GSSSYSENPCTENFHSGVSATEHSPSH--SKPPAEGPLKAIVFSQWTSMLDLVEHSLNVASIEYRRLDGTMTLGARDRAVRDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVSRITIKNTVEDRILALQEEKRKMVASAFGEDQTGGSATRLTVEDLKYLFIA 1081    
BLAST of XM_017363281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5EQD1 ((Cdk-activating kinase assembly factor {ECO:0000313|EMBL:PON87722.1}))

HSP 1 Score: 1087.79 bits (2812), Expect = 0.000e+0
Identity = 587/1032 (56.88%), Postives = 737/1032 (71.41%), Query Frame = 0
 
Query:    6 IDISSSSESWDLEADESIVDDSVTSAGLRRLPSWADFAGTSSAVNGGTSYKSNSRVSTS--------NGNVWNP-GHQN-------HVGTDHG---RLSSKAHS----------------RTTIPNGSSSHGFGQHLYGQVLKRSLAPSLKPHVHGSTYSIGNLGSSQIRESYARSYPAQGVPNQLENQLEKD-----CDDDLVMYDKNGSLPMPKPFMPRTYPSTAQHSSSAGPGLH-SGAGKEQYGEYDERLIYQAALQDLNQPKAEATYPDGLLSVSLLKHQRIALSWMLQKE-KSVCCSGGFLADDQGLGKTISMIALIQIQKLLQSKSKSEDVSDKRAEALNLDDDEENDANAFE-KCKQDEDSHDLILIPEASTSSRNIQPKRPQAGTLVVCPASVLRQWDRELKEKVDDKAKLRVLIYHGSNRTKDPVELAKYDVVLTTYAIVANEVPQTSGDDEDQNKKNMENSGLISDFSCNNKRKRKTHAGKKSKKAKKGIEISCIDSDCGTLAKVRWLRVILDEAQTIKNHRTQVARACAGFKAKSRWCLSGTPIQNSIDDLFSYFRFLKYDPYTTYKSFCSKLKNPISRDSVQGYKKLYAVLSAVMLRRTKGTFIDGEPIIRLPRKTINLIQAEFSEEERDFYKELEANSLSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLGMGVKSDSIGRDSVQMVKNLPRDMLINLMKHLDPFSAICCVCNDPPEDAVVTMCGHVFCYQCVSEYLRGDENTCPSYECKELLGHDVVFSKDTLRSCLHGNDHHDFGPSSE---KPLVLQKGYRSSKVKAAMEILQSHCKSNNACSQLHNIVGHSDISSSRGKETAESVGS-IVEFTNTKACSDAHTEAPKKAIVFSQWTGMLDLVEISLNHSDLRYRRLDGTMTLSARDKAVKEFNNDPEVTVMLMSLKAGNLGLNMVAATHVVLLDLWWNPTTEDQAIDRAHRIGQTRPVTVSRLTIKNTIEERILALQDDKRKMVASAFGEDQSGGSGNRLTVEDLRFLFM 990
            +DISSS   +++E     V D+  SA +R LP+    +GT+S+  G   Y   SR  TS        NG+  N  GH         H   D G   ++ ++AH                  + I N +S + + +    Q LKR+L  SL P +  +     N  SSQIR++Y  SY + G  + +     +D      D+D++MY+  GS  +P P M    P+     +++   +H S  G+E+  E DERLIYQAAL+DLNQPK EA  PDGLLSV LL+HQ+IAL+WMLQKE +S+ C GG LADDQGLGKT+SMIALIQ+QK +QSKSKSE+  +++A ALN+DDD++++A     +  + E+S D+  IPE STS+R    +RP AGTLVVCPASVLRQW REL++KV  +A L +L+YHG +RTKDPV+LA++DVV+TTY+IV NEVP+    DED+++KN E  GL SDF+ N ++K+ +   K+ KK +KGI+ S +D DCG LA+V W RVILDEAQTIKNHRTQVARAC   +AK RWCLSGTPIQN+IDDL+SYFRFL+YDPY  YKSF + +K PISR+S+QGYKKL AVL A+MLRRTKGTFIDGEPII+LP KT+ L + +FS EER FY +LEA+S S+FKAYAAAGT+NQNYANILLMLLRLRQACDHP L     SD +G+DSV+M K LPRDMLINL+  L+   AIC  C+DPPED VVTMCGHVFCYQCVSEYL GD+N CP+ ECKEL+G DV+FSK TLRSC+  +D  D  P  +   K +V+Q  Y SSK++A +EILQSH K N+  ++  + VG  + SSS  KE  +S  S I     T   S    E P K IVFSQWT MLDLVE++LN S ++YRRLDGTM+L++RD+ VK+FN+DPEVTVMLMSLKAGNLGLNMVAA HV+LLDLWWNPTTEDQAIDRAHRIGQTRPVTV+RLTIK+T+E+RILALQ++KRKMVASAFGED SGGS  RLTVEDL++LFM
Sbjct:    4 VDISSSDSDFEIED----VRDTTHSANVRYLPNSLSGSGTNSSSRG---YLGQSRNVTSPNYGAFSSNGSSLNVNGHTRTQLQIHPHFSDDVGPSNQIFARAHDSKYHADENVRHQPQTVNSRIAN-NSDNDYEKLSSQQALKRTLPSSLMPSLLRAEV---NGSSSQIRDTYGSSYHSAGPSSTISKGHMRDHSSMGNDNDVLMYENGGSRILP-PSMMHVKPTAGTQFATSSDSVHRSAIGEERVAESDERLIYQAALEDLNQPKVEANLPDGLLSVPLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTVSMIALIQMQKFIQSKSKSEESCNQKAVALNIDDDDDDNAKVVSNEVTKTEESDDIKSIPEVSTSTRVFSKRRPAAGTLVVCPASVLRQWARELEDKVAVEAPLSILVYHGGSRTKDPVQLARHDVVVTTYSIVTNEVPKQPLVDEDEDEKNGEKYGLSSDFTMNKRKKKTSSVSKRGKKGRKGIDSSGVDYDCGPLARVGWSRVILDEAQTIKNHRTQVARACCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTFIDGEPIIKLPPKTVCLSKVDFSSEERAFYTQLEADSRSRFKAYAAAGTVNQNYANILLMLLRLRQACDHPYLVKEYDSDCVGKDSVEMAKRLPRDMLINLLSLLEASLAICRKCDDPPEDPVVTMCGHVFCYQCVSEYLTGDDNMCPATECKELVGSDVIFSKATLRSCI--SDDLDGSPDYQFVDKAIVMQTDYSSSKIRAVLEILQSHSKPNSLDTEPCSSVG-CNGSSSLVKEIVDSCHSGISVVKRTTTYSKMPNEGPIKTIVFSQWTSMLDLVEMALNQSYIQYRRLDGTMSLASRDRGVKDFNSDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEDHSGGSATRLTVEDLKYLFM 1020    
BLAST of XM_017363281.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P9EHU8 ((helicase-like transcription factor CHR28 isoform X3 {ECO:0000313|RefSeq:XP_035547049.1}))

HSP 1 Score: 1086.25 bits (2808), Expect = 0.000e+0
Identity = 583/1005 (58.01%), Postives = 714/1005 (71.04%), Query Frame = 0
 
Query:    6 IDISSSSESWDLEADESIVDDSVTSAGLRRLPSWADFAGTSSAVNGGTSYKSNSRVSTSNGNVWNPGHQNHVGTDHGRLSSKAHSRTTIPNGSSSHGFGQHLYGQVLKRSLAPSLKPHVHGS--TYSIGNLGSSQIRESYARSYPAQG-----VPNQLENQLEKDCDDDLVMYDKNGSLPMPKPFMPRTYPSTAQHSSSAGPGLHSGAGKEQYGEYDERLIYQAALQDLNQPKAEATYPDGLLSVSLLKHQRIALSWMLQKE-KSVCCSGGFLADDQGLGKTISMIALIQIQKLLQSKSKSEDVSDKRAEALNLDDDEE-NDANAFEKCKQDEDSHDLILIPEASTSSRNIQPKRPQAGTLVVCPASVLRQWDRELKEKVDDKAKLRVLIYHGSNRTKDPVELAKYDVVLTTYAIVANEVP-QTSGDDEDQNKKNMENSGLISDFSCNNKRKRKTHAGKKSKKAKKGIEISCIDSDCGTLAKVRWLRVILDEAQTIKNHRTQVARACAGFKAKSRWCLSGTPIQNSIDDLFSYFRFLKYDPYTTYKSFCSKLKNPISRDSVQGYKKLYAVLSAVMLRRTKGTFIDGEPIIRLPRKTINLIQAEFSEEERDFYKELEANSLSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPLLGMGVKSDSIGRDSVQMVKNLPRDMLINLMKHLDPFSAICCVCNDPPEDAVVTMCGHVFCYQCVSEYLRGDENTCPSYECKELLGHDVVFSKDTLRSCLHGN-DHHDFGPSSEKPLVLQKGYRSSKVKAAMEILQSHCK-------SNNACSQLHNIV--GHSDISSSRGKETAESVGSIVEFTNTKACSDAHTEAPKKAIVFSQWTGMLDLVEISLNHSDLRYRRLDGTMTLSARDKAVKEFNNDPEVTVMLMSLKAGNLGLNMVAATHVVLLDLWWNPTTEDQAIDRAHRIGQTRPVTVSRLTIKNTIEERILALQDDKRKMVASAFGEDQSGGSGNRLTVEDLRFLFM 990
            IDISSS +  DLE+ E+   D   S   R LP WA   GT+S+  G   +    R   S    +     +    +H R   + H     P  S +     H   Q LKR+L PSL+P V  +   +   N+G+S +R +Y  S+ + G         L++   +  +D+++  + +G+  +P   M     S+ Q  +S  P      G+E+  E DERLIYQAAL+DLNQPK EAT PD LLSV LL+HQ+IAL+WMLQKE +S+ C GG LADDQGLGKTISMIALIQ+Q+ LQSK  SED+ +++ EALNLDDD++ N +   ++ K+ E++  L  IPE STS R    +RP AGTLVVCPASVLRQW REL +KV D+AKL VL+YHG +RTKDPVELAK+DVVLTTYAIV NEVP Q   D++D ++KN E  GL ++FS N KRK+ ++  K+ KK +KGI+ S ID  CG LA+V W RVILDEAQTIKNHRTQVARAC   +AK RWCLSGTPIQN+IDDL+SYFRFLKYDPY  YKSF + +K PISR+S+ GYKKL AVL A+MLRRTKGT IDGEPII+LP K INL +  FS EER FY +LEA+S +QFKAYAAAGT+NQNYANILLMLLRLRQACDHP L     SDS+G+DS++M K LPRDMLINL+  L+   AIC VC+DPPED VVT+CGHVFCYQCVSEYL GD+NTCP+  CKE LG D+VFSK +L SCL+ + D      S+E+ LVLQ  Y SSK++A +EILQ+HCK       + +  SQ    +  GHS             VG+I    +T   S    E P KAI+FSQWT MLDLVEISLN S + YRRLDGTMTL ARD+AV++FN D EVTVMLMSLKAGNLGLNMVAA HV+LLDLWWNPTTEDQA+DRAHRIGQTRPVTV+R+TIK+T+E+RIL+LQ++KRKMVASAFGEDQSGGS  RLTVEDL++LFM
Sbjct:   66 IDISSSDD--DLESWET---DGWGSTSSRVLPEWASTRGTNSSAAG---HSVQPRKVNSPKRAYASNGNSSNINNHSREKLRFH-----PGSSDNIRAPNHQSAQALKRTLPPSLQPFVPSTRLNHIAENMGNSTVRNTYDNSHHSAGPSVIKSKGNLQDHFSRGKNDEVISNENSGTRILPPSLMHGKAISSNQFVNSINPSFRPMVGEERQTENDERLIYQAALEDLNQPKVEATLPDNLLSVPLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALIQMQRSLQSKPTSEDLCNRKTEALNLDDDDDDNVSGVVDEVKKSEETDGLKPIPEVSTSMRAFSRQRPAAGTLVVCPASVLRQWARELDDKVADEAKLSVLVYHGGSRTKDPVELAKHDVVLTTYAIVTNEVPKQPLVDEDDADEKNGEVYGLSAEFSTNKKRKKTSYVSKRGKKGRKGIDNSSIDCGCGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSLHGYKKLQAVLRAIMLRRTKGTLIDGEPIIKLPEKKINLTKVNFSIEERAFYTKLEADSRTQFKAYAAAGTVNQNYANILLMLLRLRQACDHPCLVKDYNSDSVGKDSLKMAKKLPRDMLINLLNCLETSFAICRVCDDPPEDPVVTVCGHVFCYQCVSEYLTGDDNTCPAPGCKEQLGSDIVFSKASLSSCLYDDVDSPTISRSTER-LVLQNEYGSSKIRAVLEILQTHCKRPKSMECNGSPLSQEMTYIENGHS------------GVGAI---KHTTVFSKPPAEGPIKAIIFSQWTSMLDLVEISLNDSCIEYRRLDGTMTLGARDRAVRDFNTDSEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRITIKDTVEDRILSLQEEKRKMVASAFGEDQSGGSATRLTVEDLKYLFM 1041    
Match NameStatsDescription
A0A7J7GFE3E-Value: 0.000e+0, PID: 59.80(Uncharacterized protein {ECO:0000313|EMBL:KAF5939... [more]
A0A5B7BEX3E-Value: 0.000e+0, PID: 61.94(Uncharacterized protein {ECO:0000313|EMBL:MPA6678... [more]
A0A834L511E-Value: 0.000e+0, PID: 58.11(Uncharacterized protein {ECO:0000313|EMBL:KAF7113... [more]
A0A7N2KK38E-Value: 0.000e+0, PID: 57.18(Uncharacterized protein {ECO:0000313|EnsemblPlant... [more]
A0A2I4FX82E-Value: 0.000e+0, PID: 59.24(helicase-like transcription factor CHR28 {ECO:000... [more]
A0A6A4L9I7E-Value: 0.000e+0, PID: 58.31(Uncharacterized protein {ECO:0000313|EMBL:KAE9454... [more]
A0A7J7DU00E-Value: 0.000e+0, PID: 57.56(Uncharacterized protein {ECO:0000313|EMBL:KAF5749... [more]
A0A5N6RPX2E-Value: 0.000e+0, PID: 57.23(Uncharacterized protein {ECO:0000313|EMBL:KAE8100... [more]
A0A2P5EQD1E-Value: 0.000e+0, PID: 56.88(Cdk-activating kinase assembly factor {ECO:000031... [more]
A0A6P9EHU8E-Value: 0.000e+0, PID: 58.01(helicase-like transcription factor CHR28 isoform ... [more]
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
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