XM_017360771.1

Resource Type: 
Polypeptide
Name: 
XM_017360771.1
Identifier: 
XM_017360771.1-protein
Sequence: 
MTFRTRSEMVAPEFYLSSPALRRFVIGFVFFVGVSLSAYILFRAADVADF
PIAYSVDSSSRFGSVSSVASPPPDSDEMRLERVLKNAAMPDNTVILTTTN
DAWTTPNSVLDLFLESFRIGIGTRRLLNHMVVIALDKKAFSRCKDVHSHC
FALTTEGVDFSQEAAFLSDDYLKMMWRRIDFLRHVLEIGYNFVFTDADIM
WFRDPFPHFYKDMDFQIACDHFSGNSTDIESNSPNGGFNFVKSNNRSIEF
YKFWYSSREKYPGLHDQDVFNRIKLHPFLTDIGLKMRFLDTAFFGGFCQP
SEDLNKVCTMHANCCIGLDSKIHDLRIMLEDWRQFLSLPPTLKISSTSSW
SVPQNCSLEALHHHNQTLEEDTSQAEETLQ
Sequence Length: 
380
Sequence Checksum: 
b11b9631d5bc931042f2e326508ef704
View location in JBrowse: 
DCARv2_Chr7:2424097..2427153-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017360771.1, derives from mRNA, XM_017360771.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017360771.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017360771.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RE54 (Glycosyltransferase {ECO:0000256|RuleBase:RU363055} (2.4.2.- {ECO:0000256|RuleBase:RU363055}))

HSP 1 Score: 510.375 bits (1313), Expect = 2.383e-179
Identity = 238/357 (66.67%), Postives = 290/357 (81.23%), Query Frame = 0
 
Query:   21 LRRFVIGFVFFVGVSLSAYILFRAADVADFPIAYSVDSSSRFGSVSSVASPPPDSDEMRLERVLKNAAMPDNTVILTTTNDAWTTPNSVLDLFLESFRIGIGTRRLLNHMVVIALDKKAFSRCKDVHSHCFALTTEGVDFSQEAAFLSDDYLKMMWRRIDFLRHVLEIGYNFVFTDADIMWFRDPFPHFYKDMDFQIACDHFSGNSTDIESNSPNGGFNFVKSNNRSIEFYKFWYSSREKYPGLHDQDVFNRIKLHPFLTDIGLKMRFLDTAFFGGFCQPSEDLNKVCTMHANCCIGLDSKIHDLRIMLEDWRQFLSLPPTLKISSTSSWSVPQNCSLEALHHHNQTLEEDTSQAEE 377
            LRR ++   FF+ VSLS ++LF+A+  A   IA   D  SR  +V    S    S+E +LERVL+NAAM D TVILTT N+AW  PNS++DLFLESFRIG GTR+LLNH+++IALD++AFSRC+ +H+HCFAL TEGV+FS+EA F++ DYLKMMWRRIDFLR VLE+GYNFVFTDADIMWFR+PFP FY D DFQIACDHF GNS D+E N PNGGFNFV+SNNR+IEFYKFWYSSRE YPG HDQDV N IK   F+ D+ LKMRFL+TA FGGFC+PS+DLN+VCTMHANCC GL +K+HDLR+ L+DW+++LSLPP+LK SS SSW VPQNCSL+ +HH+N T ++   QA+E
Sbjct:   45 LRRSIVLVCFFLAVSLSCFVLFKASHTAGLRIAEPFDPFSRLRNVVPSVSDTAGSEEFKLERVLQNAAMKDGTVILTTLNEAWAAPNSIIDLFLESFRIGYGTRKLLNHLMIIALDERAFSRCQVLHNHCFALLTEGVNFSKEAYFMTPDYLKMMWRRIDFLRSVLEMGYNFVFTDADIMWFRNPFPRFYLDADFQIACDHFVGNSYDLE-NKPNGGFNFVRSNNRTIEFYKFWYSSREVYPGYHDQDVLNIIKFDAFIIDLELKMRFLNTANFGGFCEPSKDLNRVCTMHANCCFGLGNKLHDLRVTLDDWKRYLSLPPSLKKSSISSWRVPQNCSLDLIHHYNST-QKSVEQAKE 399
[Close]
BLAST of XM_017360771.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B9Z2 (Nucleotid_trans domain-containing protein {ECO:0000259|Pfam:PF03407})

HSP 1 Score: 509.605 bits (1311), Expect = 3.855e-179
Identity = 250/361 (69.25%), Postives = 291/361 (80.61%), Query Frame = 0
 
Query:   17 SSPALRRFVIGFVFFVGVSLSAYILFRAADVADFPIAYSVDSSSRFGSV-SSVASPPP-DSDEMRLERVLKNAAMPDNTVILTTTNDAWTTPNSVLDLFLESFRIGIGTRRLLNHMVVIALDKKAFSRCKDVHSHCFALTTEGVDFSQEAAFLSDDYLKMMWRRIDFLRHVLEIGYNFVFTDADIMWFRDPFPHFYKDMDFQIACDHFSGNSTDIESNSPNGGFNFVKSNNRSIEFYKFWYSSREKYPGLHDQDVFNRIKLHPFLTDIGLKMRFLDTAFFGGFCQPSEDLNKVCTMHANCCIGLDSKIHDLRIMLEDWRQFLSLPPTLKISSTSSWSVPQNCSLEALHHHNQTLEEDTSQA 375
            S+  LRR +I  +FF  VSLS +IL++A++   F +  S D SSRF  V  SVA   P DSDE RLE+VLK+AAM D TVILTT N+AW  PNSV+DLFLESFRIG  TRRLLNH+V+IA+D+KAFSRC  +H HCFAL TEGVDFSQEA F++ DYLKMMWRRIDFLR VLE+GYNFVFTDADIMWFRDPFP FY D DFQIACDHFSG+S D+E N PNGGF FV+SNNRSIEFYKFWYSSRE YPG HDQDV N IK   F+TDI LKMRFL+TA+FGG C+PS+D N VCTMHANCC GLDSK+HDLRIML+DW+Q+LSLP +LK SS  SW VP NCSL++L H++ + E++  Q 
Sbjct:   38 SASILRRTLIAALFFAVVSLSCFILYKASESVGFRLPNSFDPSSRFRYVFPSVADDSPLDSDEYRLEKVLKDAAMQDRTVILTTLNEAWAAPNSVIDLFLESFRIGDRTRRLLNHLVIIAMDQKAFSRCLVIHIHCFALVTEGVDFSQEAYFMTPDYLKMMWRRIDFLRSVLEMGYNFVFTDADIMWFRDPFPRFYFDADFQIACDHFSGSSLDLE-NRPNGGFTFVRSNNRSIEFYKFWYSSRETYPGNHDQDVLNNIKYDSFITDIDLKMRFLNTAYFGGLCEPSKDFNLVCTMHANCCFGLDSKLHDLRIMLQDWKQYLSLPLSLKRSSILSWRVPWNCSLDSLRHYDYS-EKNAEQG 396
[Close]
BLAST of XM_017360771.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H1J9 (Nucleotid_trans domain-containing protein {ECO:0000259|Pfam:PF03407})

HSP 1 Score: 505.368 bits (1300), Expect = 3.685e-177
Identity = 247/376 (65.69%), Postives = 299/376 (79.52%), Query Frame = 0
 
Query:    9 MVAPEFYLSSPALRRFVIGFVFFVGVSLSAYILFRAADVADFPIAYSVDSSSRFGSVS-SVA------SPPPDSDEMRLERVLKNAAMPDNTVILTTTNDAWTTPNSVLDLFLESFRIGIGTRRLLNHMVVIALDKKAFSRCKDVHSHCFALTTEGVDFSQEAAFLSDDYLKMMWRRIDFLRHVLEIGYNFVFTDADIMWFRDPFPHFYKDMDFQIACDHFSGNSTDIESNSPNGGFNFVKSNNRSIEFYKFWYSSREKYPGLHDQDVFNRIKLHPFLTDIGLKMRFLDTAFFGGFCQPSEDLNKVCTMHANCCIGLDSKIHDLRIMLEDWRQFLSLPPTLKISSTSSWSVPQNCSLEALHHHNQTLEEDTSQAEE 377
            ++ P+F  S+  LRR +I   FF   SLS ++L++AAD A   +  S D S R   VS SVA      S    SD+ +LERVLKNAAM D TVILTT N+AW  PNS++DLFLESFRIG GTR+LLNH+V+IALD+KAFSRC  VH+HCF+L TEGV+FSQEA F++ DYLKMMWRRIDFLR VLE+GYNFVFTDADIMWFRDPFP FY D DFQIACD F G+S D+E N PNGGF+FV+SNNRSIEFYKFW+SSRE YPG HDQDV N IK   FL DI LKMRFL+TA FGGFC+PS+DLN+VCTMHANCC+G+ +K+HDL++MLEDW+Q++SLPP+LK SS SSW VPQNCS+E++ HH+++ ++   QA E
Sbjct:   35 VMLPDFS-SAAFLRRSLIVLSFFAAASLSCFVLYKAADSAGLRLPESFDPSFRLRYVSPSVANDSTAMSSTTVSDKYKLERVLKNAAMKDGTVILTTLNEAWAAPNSIIDLFLESFRIGYGTRKLLNHLVIIALDEKAFSRCLVVHNHCFSLFTEGVNFSQEAYFMTPDYLKMMWRRIDFLRSVLEMGYNFVFTDADIMWFRDPFPRFYLDADFQIACDQFLGSSYDLE-NRPNGGFSFVRSNNRSIEFYKFWHSSREVYPGYHDQDVLNIIKYDAFLIDIELKMRFLNTANFGGFCEPSKDLNQVCTMHANCCVGMGNKVHDLKVMLEDWKQYMSLPPSLKRSSISSWRVPQNCSVESI-HHSESPQKSVEQAGE 407
[Close]
BLAST of XM_017360771.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AI73 (Nucleotid_trans domain-containing protein {ECO:0000259|Pfam:PF03407})

HSP 1 Score: 503.827 bits (1296), Expect = 7.489e-177
Identity = 245/358 (68.44%), Postives = 285/358 (79.61%), Query Frame = 0
 
Query:   23 RFVIGFVFFVGVSLSAYILFRAADVADFPIAYSVDS-----SSRFGSVSSVASPPPDSDEMRLERVLKNAAMPDNTVILTTTNDAWTTPNSVLDLFLESFRIGIGTRRLLNHMVVIALDKKAFSRCKDVHSHCFALTTEGVDFSQEAAFLSDDYLKMMWRRIDFLRHVLEIGYNFVFTDADIMWFRDPFPHFYKDMDFQIACDHFSGNSTDIESNSPNGGFNFVKSNNRSIEFYKFWYSSREKYPGLHDQDVFNRIKLHPFLTDIGLKMRFLDTAFFGGFCQPSEDLNKVCTMHANCCIGLDSKIHDLRIMLEDWRQFLSLPPTLKISSTSSWSVPQNCSLEALHHHNQTLEEDTSQA 375
            R ++  +FF  VSLS +IL+RA++   F +  S DS       R+   S V   P DSDE RLERVLK+AAM D TVILTT N+AW  PNSV+DLFLESFRIG  TRRLLNH+V+IALD+KAFSRC  +H+HCFAL TEGVDFSQEA F++  YLKMMWRRIDFLR VLE+GYNF+FTDADIMWFRDPFPHFY D DFQIACDHFSG+S D+E N PNGGF FV+SNNRSIEFYKFWYSSRE YPG HDQDV N+IK   F+TDI LKMRFL+TA+FGG C+PS+D N VCTMHANCC GLDSK+HDLRIML+DW+++LSLP +LK SS SSW VP NCSL++LH ++   E D  Q 
Sbjct:   40 RTLVVALFFAAVSLSCFILYRASESVGFRLLNSFDSFDPSSGLRYVFPSVVDDSPLDSDEYRLERVLKDAAMQDRTVILTTLNEAWAAPNSVIDLFLESFRIGDRTRRLLNHLVIIALDQKAFSRCLVIHTHCFALVTEGVDFSQEAYFMTPGYLKMMWRRIDFLRSVLEMGYNFIFTDADIMWFRDPFPHFYLDADFQIACDHFSGSSLDLE-NRPNGGFKFVRSNNRSIEFYKFWYSSRETYPGNHDQDVLNKIKNDSFITDIDLKMRFLNTAYFGGLCEPSKDFNLVCTMHANCCFGLDSKLHDLRIMLQDWKRYLSLPLSLKRSSISSWRVPWNCSLDSLHRYDSA-EIDAEQG 395
[Close]
BLAST of XM_017360771.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GFC6 (Nucleotid_trans domain-containing protein {ECO:0000259|Pfam:PF03407})

HSP 1 Score: 494.967 bits (1273), Expect = 9.226e-174
Identity = 241/358 (67.32%), Postives = 284/358 (79.33%), Query Frame = 0
 
Query:   21 LRRFVIGFVFFVGVSLSAYILFRAADVADFPIAYSVDSSSRFGS-VSSVA-SPPPDSDEMRLERVLKNAAMPDNTVILTTTNDAWTTPNSVLDLFLESFRIGIGTRRLLNHMVVIALDKKAFSRCKDVHSHCFALTTEGVDFSQEAAFLSDDYLKMMWRRIDFLRHVLEIGYNFVFT--DADIMWFRDPFPHFYKDMDFQIACDHFSGNSTDIESNSPNGGFNFVKSNNRSIEFYKFWYSSREKYPGLHDQDVFNRIKLHPFLTDIGLKMRFLDTAFFGGFCQPSEDLNKVCTMHANCCIGLDSKIHDLRIMLEDWRQFLSLPPTLKISSTSSWSVPQNCSLEALHHHNQTLEEDTSQ 374
            L R ++ F FF  V LS ++LF+AAD+A  P+  S D  SRF   + S+A +    SDE  LERVLKNAAM D TVILTT N+AW  PNS+LDLFLESFRIG GTRRLLNH+V+I LD++AFSRC  VH HCF+L TEG+DFS+EA F++ +YL+MMWRRIDFLR VLE+GYNFVFT  DADIMWFRDPFP FY D DFQIACDHF G+S D+E N PNGGFNFV+SNNRSIEFYKFWYSSRE YP  HDQDV N IK   F+ DI LKMRFL+TA FGGFC+PS+DLN+VCTMHANCC GL +K+HDLR+MLEDW+Q++SLPP+LK SS S W VPQNCSL+++HH  Q   E   +
Sbjct:   13 LSRCIVVFCFFAAVFLSCFVLFKAADLAGLPLPDSFDPPSRFRYFLPSIADNSTAGSDEYNLERVLKNAAMRDGTVILTTLNEAWAAPNSILDLFLESFRIGDGTRRLLNHLVIITLDERAFSRCVAVHDHCFSLITEGIDFSREAYFMTPEYLRMMWRRIDFLRSVLEMGYNFVFTLKDADIMWFRDPFPRFYLDADFQIACDHFMGSSYDLE-NRPNGGFNFVRSNNRSIEFYKFWYSSREVYPESHDQDVLNIIKFDAFVLDIDLKMRFLNTANFGGFCEPSKDLNRVCTMHANCCFGLVNKLHDLRVMLEDWKQYMSLPPSLKRSSLSFWRVPQNCSLDSIHHSPQNNVEQLKE 369
[Close]
BLAST of XM_017360771.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RDI7 (Nucleotid_trans domain-containing protein {ECO:0000259|Pfam:PF03407})

HSP 1 Score: 488.419 bits (1256), Expect = 2.302e-171
Identity = 234/346 (67.63%), Postives = 277/346 (80.06%), Query Frame = 0
 
Query:   20 ALRRFVIGFVFFVGVSLSAYILFRAADVADFPIAYSVDSSSRFGSVSSVASPPPDSDEMRLERVLKNAAMPDNTVILTTTNDAWTTPNSVLDLFLESFRIGIGTRRLLNHMVVIALDKKAFSRCKDVHSHCFALTTEGVDFSQEAAFLSDDYLKMMWRRIDFLRHVLEIGYNFVFTDADIMWFRDPFPHFYKDMDFQIACDHFSGNSTDIESNSPNGGFNFVKSNNRSIEFYKFWYSSREKYPGLHDQDVFNRIKLHPFLTDIGLKMRFLDTAFFGGFCQPSEDLNKVCTMHANCCIGLDSKIHDLRIMLEDWRQFLSLPPTLKISSTSSWSVPQNCSLEALHHHN 365
             LRRF++       VSLS  +LFRA+D   FP  +S  S S     S+    P  S E RLE+VLK+AAM D TVILTT N+AW  PNSV+DLFLESFR+G GT RLLNH+V+IALD+KAF+RC  VH+HCF+L +EGVDF +EA F++ DYLKMMWRRIDFLR VLE+GYNFVFTDAD+MWFRDPFP FY D DFQIACDHF G+S D++ N PNGGFN+VKSNNRSIEFYKFWYSS E YP  HDQDV N IK   F+TDIGLKM+FLDTA+FGG C+PS+DLN VCTMHANCC GLDSK+HDLRIML+DW+Q++SLPP+LK  S  SW+VPQNCSL++L H++
Sbjct:   10 VLRRFLL----LAAVSLSFLVLFRASDSLGFPPRFSFPSGS-----SASDDSPLVSGENRLEKVLKDAAMGDGTVILTTLNEAWAAPNSVIDLFLESFRLGDGTLRLLNHLVIIALDQKAFARCLVVHTHCFSLVSEGVDFHREAYFMTPDYLKMMWRRIDFLRSVLEMGYNFVFTDADVMWFRDPFPQFYLDADFQIACDHFIGSSDDVQ-NRPNGGFNYVKSNNRSIEFYKFWYSSHETYPEYHDQDVLNIIKFDSFVTDIGLKMKFLDTAYFGGLCEPSKDLNLVCTMHANCCYGLDSKLHDLRIMLQDWKQYMSLPPSLKRVSILSWTVPQNCSLDSLQHYD 345
[Close]
BLAST of XM_017360771.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2Z7CDB4 (Nucleotid_trans domain-containing protein {ECO:0000259|Pfam:PF03407})

HSP 1 Score: 487.649 bits (1254), Expect = 7.891e-171
Identity = 233/352 (66.19%), Postives = 275/352 (78.12%), Query Frame = 0
 
Query:   13 EFYLSSPALRRFVIGFVFFVGVSLSAYILFRAADVADFPIAYSVDSS--SRFGSVSSVASPPPDSDEMRLERVLKNAAMPDNTVILTTTNDAWTTPNSVLDLFLESFRIGIGTRRLLNHMVVIALDKKAFSRCKDVHSHCFALTTEGVDFSQEAAFLSDDYLKMMWRRIDFLRHVLEIGYNFVFTDADIMWFRDPFPHFYKDMDFQIACDHFSGNSTDIESNSPNGGFNFVKSNNRSIEFYKFWYSSREKYPGLHDQDVFNRIKLHPFLTDIGLKMRFLDTAFFGGFCQPSEDLNKVCTMHANCCIGLDSKIHDLRIMLEDWRQFLSLPPTLKISSTSSWSVPQNCSLEALH 362
            +F+ ++  LRR     +  V ++LS + L+RAA+   F ++Y   S   +    +   AS   DS+E  LERVLK A+M D +VILTT NDAW  PNSV+DLFLESFRIG  TR LLNH+V+I LD+KAFSRC  VHSHCF L TEGVDFS EA F+  +Y+KMMWRRIDFLR VLE+GYNF FTDADIMWFRDPFPHF  D+DFQIACDHFSGNS D+E N PNGGF FV+SNNRSIEFYKFWYSSREKYP LHDQDV NRIK    + +IG K++FLDTA+FGGFC+PS DLN+VCTMHANCC GLDSK+HDLRI+LEDW+ +LSLPP+LK  S S+W VPQNCSL +LH
Sbjct:    4 DFFTNAAVLRRAATTMLLLVVMALSCFFLYRAAESVGFRVSYYKYSPIVTHVMPLFEDASHSSDSEEYSLERVLKEASMEDKSVILTTLNDAWAAPNSVIDLFLESFRIGQRTRHLLNHLVIITLDQKAFSRCLVVHSHCFGLITEGVDFSHEAYFMKPNYVKMMWRRIDFLRSVLEMGYNFAFTDADIMWFRDPFPHFQPDVDFQIACDHFSGNSDDLE-NKPNGGFKFVRSNNRSIEFYKFWYSSREKYPRLHDQDVLNRIKYDTSMLEIGFKIKFLDTAYFGGFCEPSRDLNRVCTMHANCCFGLDSKLHDLRILLEDWKHYLSLPPSLK-QSMSTWRVPQNCSLNSLH 353
[Close]
BLAST of XM_017360771.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9H350 (Nucleotid_trans domain-containing protein {ECO:0000259|Pfam:PF03407})

HSP 1 Score: 487.263 bits (1253), Expect = 5.500e-170
Identity = 242/374 (64.71%), Postives = 289/374 (77.27%), Query Frame = 0
 
Query:   16 LSSPA---LRRFVIGFVFFVGVSLSAYILFRAAD----VADFPIAYSVDSSSRFGSVSSVASPPPDSDEMRLERVLKNAAMPDNTVILTTTNDAWTTPNSVLDLFLESFRIGIGTRRLLNHMVVIALDKKAFSRCKDVHSHCFALTTEGVDFSQEAAFLSDDYLKMMWRRIDFLRHVLEIGYNFVFTDADIMWFRDPFPHFYKDMDFQIACDHFSGNSTDIESNSPNGGFNFVKSNNRSIEFYKFWYSSREKYPGLHDQDVFNRIKLHPFLTDIGLKMRFLDTAFFGGFCQPSEDLNKVCTMHANCCIGLDSKIHDLRIMLEDWRQFLSLPPTLKISSTSSWSVPQNCSLEALHH-----HNQTLEEDTSQAEE 377
            L  PA   LRRF++     V VSLS Y++ RA+D    +  FP + S      F SVS     P  SDE RLE+VLK+AAM D TVILTT N+AW   NSV+DLFLESFRIG  TR LLNH+V++ALD+KAF+RC  +H+HC +L +EGVDF +EA F++ DYLKMMWRRIDFLR VLE+GYNFVFTDADIMWFRDPF  FY D DFQIACDHF G+S D+E N PNGGFN+VKSNNRSIEFYKFWYSSRE YPG HDQDV N IK HPF+ DIGLK++FLDTA+FGG C+PS+DLN+VCTMHANCC GLDSK+HDL+IML+DW+QF+SLPP+LK  S  SW VPQNCSL++L H     HN + E+D  + ++
Sbjct:   46 LPEPAALILRRFLL----LVAVSLSCYVILRASDSLRFLPRFPSSSSSAFPYIFPSVSD--DSPTVSDEYRLEKVLKDAAMVDRTVILTTLNEAWAAQNSVIDLFLESFRIGDRTRWLLNHLVIVALDQKAFARCLVLHTHCVSLVSEGVDFHREAYFMTPDYLKMMWRRIDFLRSVLEMGYNFVFTDADIMWFRDPFQRFYLDADFQIACDHFLGSSDDLE-NRPNGGFNYVKSNNRSIEFYKFWYSSRETYPGYHDQDVLNIIKFHPFIMDIGLKIKFLDTAYFGGLCEPSKDLNQVCTMHANCCYGLDSKLHDLKIMLQDWKQFMSLPPSLKRLSILSWRVPQNCSLDSLQHYGSPQHNDSPEKDVKEWQD 412
[Close]
BLAST of XM_017360771.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6ITE1 (Nucleotid_trans domain-containing protein {ECO:0000259|Pfam:PF03407})

HSP 1 Score: 482.641 bits (1241), Expect = 1.286e-168
Identity = 232/348 (66.67%), Postives = 273/348 (78.45%), Query Frame = 0
 
Query:   17 SSPALRRFVIGFVFFVGVSLSAYILFRAADVADFPIAYSVDSSSRFGSVSSVASPPPDSDEMRLERVLKNAAMPDNTVILTTTNDAWTTPNSVLDLFLESFRIGIGTRRLLNHMVVIALDKKAFSRCKDVHSHCFALTTEGVDFSQEAAFLSDDYLKMMWRRIDFLRHVLEIGYNFVFTDADIMWFRDPFPHFYKDMDFQIACDHFSGNSTDIESNSPNGGFNFVKSNNRSIEFYKFWYSSREKYPGLHDQDVFNRIKLHPFLTDIGLKMRFLDTAFFGGFCQPSEDLNKVCTMHANCCIGLDSKIHDLRIMLEDWRQFLSLPPTLKISSTSSWSVPQNCSLEALHHH 364
            S   +RR     +     S S ++L+RA +   F I  S  +S    +VS+ +    DS+E RLE+VLKNAAM D TVILTT N+AW  PNSV+DLFLESFRIG  TRRLLNH+V+IALD+KAF+RC  +H HC+AL TEGVDFS+EA F+  DYLKMMWRRIDFLR VLE+GYNFVFTDAD+MWFRDPFPHFYKD DFQIACDHFSG   D+  N PNGGFN V+SNNRSIEFYKFWYSSRE YP LHDQDV N IK    + DIGLKMRFLDTA+FGGFC+PS++L++VCTMHANCC GL+SK+HDLRI+L+DW+ FLSLPP  KISS  SW VPQNCSL++L  +
Sbjct:   20 SGLVVRRIATVALVLAAASFSCFVLYRAGENVGFRIPDSFITSRATPNVSASS----DSEEYRLEKVLKNAAMEDKTVILTTLNEAWAVPNSVVDLFLESFRIGDHTRRLLNHLVIIALDEKAFTRCLSLHIHCYALVTEGVDFSKEAYFMFPDYLKMMWRRIDFLRVVLEMGYNFVFTDADVMWFRDPFPHFYKDADFQIACDHFSGKPDDV-GNRPNGGFNHVRSNNRSIEFYKFWYSSREMYPSLHDQDVLNNIKNDSLIRDIGLKMRFLDTAYFGGFCEPSKNLSEVCTMHANCCFGLESKLHDLRILLQDWKSFLSLPPAQKISSAVSWRVPQNCSLDSLRRY 362
[Close]
BLAST of XM_017360771.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9U7F0 (Nucleotid_trans domain-containing protein {ECO:0000259|Pfam:PF03407})

HSP 1 Score: 481.871 bits (1239), Expect = 4.481e-168
Identity = 231/344 (67.15%), Postives = 273/344 (79.36%), Query Frame = 0
 
Query:   37 SAYILFRAAD---VADFPIAYSVDSSSRFGSVSSVASPPPDSDEMRLERVLKNAAMPDNTVILTTTNDAWTTPNSVLDLFLESFRIGIGTRRLLNHMVVIALDKKAFSRCKDVHSHCFALTTEGVDFSQEAAFLSDDYLKMMWRRIDFLRHVLEIGYNFVFTDADIMWFRDPFPHFYKDMDFQIACDHFSGNSTDIESNSPNGGFNFVKSNNRSIEFYKFWYSSREKYPGLHDQDVFNRIKLHPFLTDIGLKMRFLDTAFFGGFCQPSEDLNKVCTMHANCCIGLDSKIHDLRIMLEDWRQFLSLPPTLKISSTSSWSVPQNCSLEALHHHNQTLEEDTSQAEE 377
            S  +L+ AAD      FP   SV     F S+    S P  SDE +LE+VLK+AAM   TVILTT N+AW  PNS++DLFL SFRIG  TRRLLNH+V++ALD+KA+ RCK+VHSHCFAL TEG+DF +EA F++  YLKMMWRRIDFLR VLE+GYNFVFTDADIMWFRDPFP FY D DFQIACDHF+G+S ++E N PNGGFN+VKSNNRSIEFYKFWYSS+E YPG HDQDV N IK   F+ DIGLKMRFLDTA+FGGFC+PS+DL+ VCTMHANCC GLDSK+HDLRIML+DW+ FLSLPP+LK SS  SW VPQNCSL +LHH++++ E    +  +
Sbjct:   54 SCLLLYGAADSLRFLSFPSGSSVSFPYIFPSLLDNDSVPV-SDEQKLEKVLKDAAMEGRTVILTTLNEAWAAPNSIIDLFLGSFRIGEHTRRLLNHLVIVALDEKAYLRCKEVHSHCFALVTEGIDFHKEAYFMTPAYLKMMWRRIDFLRSVLEMGYNFVFTDADIMWFRDPFPRFYTDADFQIACDHFTGSSVNLE-NRPNGGFNYVKSNNRSIEFYKFWYSSQETYPGYHDQDVLNFIKFDTFVEDIGLKMRFLDTAYFGGFCEPSKDLSLVCTMHANCCYGLDSKLHDLRIMLQDWKDFLSLPPSLKNSSVVSWRVPQNCSLHSLHHYSESPETSFQEGSQ 395
Match NameStatsDescription
A0A2R6RE54E-Value: 2.383e-179, PID: 66.67Glycosyltransferase {ECO:0000256|RuleBase:RU363055... [more]
A0A5B7B9Z2E-Value: 3.855e-179, PID: 69.25Nucleotid_trans domain-containing protein {ECO:000... [more]
A0A7J7H1J9E-Value: 3.685e-177, PID: 65.69Nucleotid_trans domain-containing protein {ECO:000... [more]
A0A5J5AI73E-Value: 7.489e-177, PID: 68.44Nucleotid_trans domain-containing protein {ECO:000... [more]
A0A7J7GFC6E-Value: 9.226e-174, PID: 67.32Nucleotid_trans domain-containing protein {ECO:000... [more]
A0A5N6RDI7E-Value: 2.302e-171, PID: 67.63Nucleotid_trans domain-containing protein {ECO:000... [more]
A0A2Z7CDB4E-Value: 7.891e-171, PID: 66.19Nucleotid_trans domain-containing protein {ECO:000... [more]
A0A2N9H350E-Value: 5.500e-170, PID: 64.71Nucleotid_trans domain-containing protein {ECO:000... [more]
A0A1J6ITE1E-Value: 1.286e-168, PID: 66.67Nucleotid_trans domain-containing protein {ECO:000... [more]
A0A2C9U7F0E-Value: 4.481e-168, PID: 67.15Nucleotid_trans domain-containing protein {ECO:000... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.