Resource Type:
Polypeptide
Name:
XM_017363586.1
Identifier:
XM_017363586.1-protein
Sequence:
MEDKKALMELDLRNEFMPLDECTDMEIDENENGSMKNEGGEASDGDVVFS
REGPLASDGHIGMLENTCTCGASKKMKSTLATSDSETGSTDNGVPAKKLS
RQDRIELGRMFQAAVSCRDWELAESLILLADPQTLNDSLCISLDSVWFLS
TEEELFGITGIIKKVIANGAYDFTRAALRTSFLASCVSACQSRTMSLADT
VSVMAERLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNG
DDIYQNSPVQIQLQLSAFKIFLDLAGNNLSGKDFTEAFDAACFPLTLFSS
SFDPGWASGISATAIQGLLSMLVDGGADNVNQCFLEASRFGSTELVRILL
QIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMTFLGPLMRAAER
GCLLVVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVPHHVLSAL
SVEILKAAGERSSGSLDGVAFLLKSDFLGDPAATYAVAESISKSDDDGVA
PQLRDFLREHWSEGAFLDGLREGEDNYLNLVRILKWGESPICLGDLPSAL
KVAIAYLPLYRECVEAGGCLLSQRLRGQLVEAARRLGGKKLDEAGQEKEL
LAVLEHHLPQFFLYEAKCA
Sequence Length:
619
Sequence Checksum:
95074ee9d86dd615e4acc058d73e2753
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017363586.1, derives from mRNA, XM_017363586.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017363586.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017363586.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9STR5 ((ankyrin repeat protein SKIP35 {ECO:0000313|RefSeq:XP_011074020.1, ECO:0000313|RefSeq:XP_011074021.1}))
HSP 1 Score: 982.245 bits (2538), Expect = 0.000e+0
Identity = 485/582 (83.33%), Postives = 530/582 (91.07%), Query Frame = 0
Match: A0A6I9STR5 ((ankyrin repeat protein SKIP35 {ECO:0000313|RefSeq:XP_011074020.1, ECO:0000313|RefSeq:XP_011074021.1}))
HSP 1 Score: 982.245 bits (2538), Expect = 0.000e+0
Identity = 485/582 (83.33%), Postives = 530/582 (91.07%), Query Frame = 0
Query: 34 SMKNEGGEASDGDVVFSREGPLA--SDGHIGMLENTCTCGASKKMKSTLATSDSETGSTDNGVPAKKLSRQDRIELGRMFQAAVSCRDWELAESLILLADPQTLNDSLCISLDSVWFLSTEEELFGITGIIKKVIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVSVMAERLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNGDDIYQNSPVQIQLQLSAFKIFLDLAGNNLSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLSMLVDGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMTFLGPLMRAAERGCLLVVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVPHHVLSALSVEILKAAGERSSGSLDGVAFLLKSDFLGDPAATYAVAESISKSDDDGVAPQLRDFLREHWSEGAFLDGLREGEDNYLNLVRILKWGESPICLGDLPSALKVAIAYLPLYRECVEAGGCLLSQRLRGQLVEAARRLGGKKLDEAGQEKELLAVLEHHLPQFFL 613
S K EGG SDG+VVFSRE PL D I ++C+CGA +K+KS LA S+SE G NG +KLSRQDRIELGR+FQ AVS DWELAESLILLADPQTLND+LCISLDS+WFLST++EL+GITG+IKK+IANGAYDFTRAALRTSFLASCVSACQSRTMSLADTV+VMA+RLHERLQECNGDEVLKAEAGAKVQKFTEWALKCI FHSRCQGN D + NSPV+IQLQLSAFK FLDLAGN+L+GKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLL MLV+GGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAM FLGPLMRAAERGC+ VVQWFV+RGCRDMELCLALTAATSSSQVE+AAYLLPHVPHHVL+ALS+EILKAAGERS GSL+GVAFLL SDFLGDPAATYAVA+SI++SDD+ VAP+L+ FLREHWSE AFLDGLREGE ++ NLVRILKWG SPICL DLP+ L+VA+AYLPLYRECV+AGG LLSQR RGQLVEAARRLGG+ LDE GQ++ELLAVLEHHLP FF+
Sbjct: 67 SEKGEGG--SDGNVVFSREAPLVIKEDSTI----SSCSCGA-EKLKSRLAASNSEPGK--NG---RKLSRQDRIELGRLFQGAVSSHDWELAESLILLADPQTLNDALCISLDSIWFLSTQQELYGITGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCISFHSRCQGNRDRVGHNSPVEIQLQLSAFKTFLDLAGNHLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMAFLGPLMRAAERGCMPVVQWFVQRGCRDMELCLALTAATSSSQVEVAAYLLPHVPHHVLAALSIEILKAAGERSGGSLNGVAFLLHSDFLGDPAATYAVADSIARSDDEAVAPELKSFLREHWSEAAFLDGLREGEAHFSNLVRILKWGNSPICLRDLPAPLRVAVAYLPLYRECVKAGGRLLSQRHRGQLVEAARRLGGQVLDEPGQKRELLAVLEHHLPPFFI 636
BLAST of XM_017363586.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B711 ((Putative ankyrin repeat protein SKIP35-like {ECO:0000313|EMBL:MPA64058.1}))
HSP 1 Score: 974.156 bits (2517), Expect = 0.000e+0
Identity = 488/614 (79.48%), Postives = 529/614 (86.16%), Query Frame = 0
Match: A0A5B7B711 ((Putative ankyrin repeat protein SKIP35-like {ECO:0000313|EMBL:MPA64058.1}))
HSP 1 Score: 974.156 bits (2517), Expect = 0.000e+0
Identity = 488/614 (79.48%), Postives = 529/614 (86.16%), Query Frame = 0
Query: 14 NEFMPLDECTDMEIDENENGSMKNE-------GGEASDGDVVFSREGPLAS-DGHIGMLENTCTCGASKKMKSTLATSDSETGSTDNGVPAKKLSRQDRIELGRMFQAAVSCRDWELAESLILLADPQTLNDSLCISLDSVWFLSTEEELFGITGIIKKVIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVSVMAERLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNGDDIYQNSPVQIQLQLSAFKIFLDLAGNNLSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLSMLVDGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMTFLGPLMRAAERGCLLVVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVPHHVLSALSVEILKAAGERSSGSLDGVAFLLKSDFLGDPAATYAVAESISKSDDDGVAPQLRDFLREHWSEGAFLDGLREGEDNYLNLVRILKWGESPICLGDLPSALKVAIAYLPLYRECVEAGGCLLSQRLRGQLVEAARRLGGKKLDEAGQEKELLAVLEHHLPQFFLYEAKCA 619
NE P C ME DE NGS NE GE S+ VVFSRE PL S D I T C +KK+KS +AT+ ETG + KKLSRQDRIELGR+FQ AVS DWELAESLILLADPQTLND+LCISLDS+WFLST++EL GITG+IKK+IANGAYDFTRAALRTSFLASCVSACQSRTMSLADTV+VMA+RLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGN D + NS V+IQLQLSAFK FLDLAGN+L+GKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLL +LV+GGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNA+ FLGPLMRAAERGC+ VVQWFV RGCRDMELCLALTAATSSSQVE AAYLLPHVP HVL+ALS+EILKAAGERS GSLDGVAFLL+SDFLGD AATYAVA+ I++SDD+ VAP+LR FL +HWSE AFLDGLREG+++YLN+V+ILKWG SPICL DLP+ L+VAIAYLPLYRECV+AGGCLLSQRLRGQLVEA RRLG L+EA Q KELLAVLEHHLP F LY A
Sbjct: 22 NETNP--SCAQMETDETGNGSPNNEIAVFTSENGEGSN--VVFSREAPLVSKDPRI-----TGGCSCAKKLKSRMATAIPETGKNEKIGHEKKLSRQDRIELGRLFQGAVSSHDWELAESLILLADPQTLNDALCISLDSIWFLSTQQELCGITGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNRDKVNHNSAVEIQLQLSAFKTFLDLAGNHLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLGILVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAIAFLGPLMRAAERGCMQVVQWFVNRGCRDMELCLALTAATSSSQVETAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLRSDFLGDSAATYAVADCIARSDDEAVAPELRAFLWDHWSEAAFLDGLREGQEHYLNIVKILKWGGSPICLRDLPAPLRVAIAYLPLYRECVKAGGCLLSQRLRGQLVEAVRRLGSGALEEARQGKELLAVLEHHLPPFLLYAPSVA 626
BLAST of XM_017363586.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9FWE2 ((Uncharacterized protein {ECO:0000313|EMBL:PIM97372.1}))
HSP 1 Score: 971.074 bits (2509), Expect = 0.000e+0
Identity = 484/601 (80.53%), Postives = 528/601 (87.85%), Query Frame = 0
Match: A0A2G9FWE2 ((Uncharacterized protein {ECO:0000313|EMBL:PIM97372.1}))
HSP 1 Score: 971.074 bits (2509), Expect = 0.000e+0
Identity = 484/601 (80.53%), Postives = 528/601 (87.85%), Query Frame = 0
Query: 21 ECTDMEIDENEN---------GSMKNEGGEASDGDVVFSREGPLASDGHIGMLENTCTCGASKKMKSTLATSDSETGSTDNGVPAKKLSRQDRIELGRMFQAAVSCRDWELAESLILLADPQTLNDSLCISLDSVWFLSTEEELFGITGIIKKVIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVSVMAERLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNGDDIYQNSPVQIQLQLSAFKIFLDLAGNNLSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLSMLVDGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMTFLGPLMRAAERGCLLVVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVPHHVLSALSVEILKAAGERSSGSLDGVAFLLKSDFLGDPAATYAVAESISKSDDDGVAPQLRDFLREHWSEGAFLDGLREGEDNYLNLVRILKWGESPICLGDLPSALKVAIAYLPLYRECVEAGGCLLSQRLRGQLVEAARRLGGKKLDEAGQEKELLAVLEHHLPQFF 612
E EI NE+ S K EGG S G+VVFSRE PL + + ++C+CGA +K+KS LA SDSE G A+KLSRQDRIELGR+FQ AVS DWELAESLILLADPQTLND+LCISLDS+WFLST++EL GITG+IKK+IANGAYDFTRAALRTSFLASCVSACQSRTMSLADTV+VMA+RLHERLQECNGDEVLKAEAGAKVQKFTEWALKCI FHSRCQGN D + NSPV+IQLQLSAFK FLDLAGN+L+GKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLL MLV+GGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAM FLGPLMRAAERGC+ VVQWFV+RGCRDMELCLALTAATSSSQVE+AAYLLPHVP HVL+ALS+EILKAAGERS GSLDGVAFLL+S+FLGDPAATYAVA+SI++SDD+ VAP+L+ FL+ HWSE AFLDGLREGE ++ NLVRILKWG SPICL DLP+ L+VAIAYLPLYRECV+AGG LLSQR RGQLVEAAR LGG LDE GQ+ ELLAVLEHHLP FF
Sbjct: 46 ESAKTEIPSNESKHGTEVVVFSSEKGEGG--SHGNVVFSREAPLVIKDDLSI--SSCSCGA-EKLKSRLAASDSEPGKN-----ARKLSRQDRIELGRLFQGAVSSHDWELAESLILLADPQTLNDALCISLDSIWFLSTQQELHGITGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCISFHSRCQGNRDRVGHNSPVEIQLQLSAFKTFLDLAGNHLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMAFLGPLMRAAERGCMPVVQWFVQRGCRDMELCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLRSNFLGDPAATYAVADSIARSDDEAVAPELKAFLKAHWSEAAFLDGLREGEIHFRNLVRILKWGNSPICLRDLPAPLRVAIAYLPLYRECVKAGGFLLSQRHRGQLVEAARWLGGVVLDEPGQKNELLAVLEHHLPPFF 636
BLAST of XM_017363586.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q53HY3 ((Uncharacterized protein mc307 {ECO:0000313|EMBL:CAI84657.1}) (ankyrin repeat protein SKIP35-like {ECO:0000313|RefSeq:XP_016492313.1, ECO:0000313|RefSeq:XP_016492314.1}))
HSP 1 Score: 968.378 bits (2502), Expect = 0.000e+0
Identity = 471/598 (78.76%), Postives = 524/598 (87.63%), Query Frame = 0
Match: Q53HY3 ((Uncharacterized protein mc307 {ECO:0000313|EMBL:CAI84657.1}) (ankyrin repeat protein SKIP35-like {ECO:0000313|RefSeq:XP_016492313.1, ECO:0000313|RefSeq:XP_016492314.1}))
HSP 1 Score: 968.378 bits (2502), Expect = 0.000e+0
Identity = 471/598 (78.76%), Postives = 524/598 (87.63%), Query Frame = 0
Query: 21 ECTDMEIDENENG--SMKNEGGEASDGDVVFSREGPLASDGHIG---MLENTCTCGASKKMKSTLATSDSETGSTDNGVPAKKLSRQDRIELGRMFQAAVSCRDWELAESLILLADPQTLNDSLCISLDSVWFLSTEEELFGITGIIKKVIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVSVMAERLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNGDDIYQNSPVQIQLQLSAFKIFLDLAGNNLSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLSMLVDGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMTFLGPLMRAAERGCLLVVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVPHHVLSALSVEILKAAGERSSGSLDGVAFLLKSDFLGDPAATYAVAESISKSDDDGVAPQLRDFLREHWSEGAFLDGLREGEDNYLNLVRILKWGESPICLGDLPSALKVAIAYLPLYRECVEAGGCLLSQRLRGQLVEAARRLGGKKLDEAGQEKELLAVLEHHLPQFFL 613
+C +ME++ E G + NE GE S G+VVFSRE PL S + K+K+ L++SD E G + KKL+RQ+RIELGR+FQ AVSC DWELAESLILLADP TLND+LCI+LDS+WFLST+EEL+GITG+IKK+I+NGA+DFTRAALRTSFLASCVSACQSRTMSLADTV+VMA+RLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGN D + N+ V+IQLQLSAFK FLDLAGN+L+GKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLL MLV+GGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAM FLGPLMRAAERGC+ VV WFVKRGCRDMELCLALTAATSSSQVE+A YLLPHVP HVL+ALS+EILKAAGERS GSLDGVAFLL SDFLGDPAATYAVA+SI+KSDD+ VAP+LR FLREHWSE AF DGLR+G+++YLN+VRILKWGESP+CL DLP L+VAIAYLPLYRECV+AGGCLLSQRLRGQLVEAA+RL G L+E Q +ELLAVLEHH+P F +
Sbjct: 18 QCFEMEVESCETGIPGLSNENGEGSHGNVVFSRESPLVSKDFRSSAIVGGGGGCNCGVNKLKARLSSSDCEVGKNEKSGHEKKLNRQERIELGRLFQGAVSCHDWELAESLILLADPLTLNDALCIALDSIWFLSTQEELYGITGLIKKIISNGAFDFTRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNRDKVGHNAAVEIQLQLSAFKTFLDLAGNHLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMAFLGPLMRAAERGCIQVVDWFVKRGCRDMELCLALTAATSSSQVEVAEYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLSSDFLGDPAATYAVADSIAKSDDEAVAPELRSFLREHWSEAAFSDGLRQGQEHYLNIVRILKWGESPVCLADLPGPLRVAIAYLPLYRECVKAGGCLLSQRLRGQLVEAAKRLDGVVLEEVNQGRELLAVLEHHIPPFLV 615
BLAST of XM_017363586.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ADF9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8527221.1}))
HSP 1 Score: 966.837 bits (2498), Expect = 0.000e+0
Identity = 488/628 (77.71%), Postives = 536/628 (85.35%), Query Frame = 0
Match: A0A5J5ADF9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8527221.1}))
HSP 1 Score: 966.837 bits (2498), Expect = 0.000e+0
Identity = 488/628 (77.71%), Postives = 536/628 (85.35%), Query Frame = 0
Query: 1 MEDKKALMELDLR-NEFMPLD-ECTDMEIDENENGSMKNE-------GGEASDGDVVFSREGPLASDGHIGMLENTCTCGASKKMKSTLATSDSETGSTDNGVPAKKLSRQDRIELGRMFQAAVSCRDWELAESLILLADPQTLNDSLCISLDSVWFLSTEEELFGITGIIKKVIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVSVMAERLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNGDDIYQNSPVQIQLQLSAFKIFLDLAGNNLSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLSMLVDGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMTFLGPLMRAAERGCLLVVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVPHHVLSALSVEILKAAGERSSGSLDGVAFLLKSDFLGDPAATYAVAESISKSDDDGVAPQLRDFLREHWSEGAFLDGLREGEDNYLNLVRILKWGESPICLGDLPSALKVAIAYLPLYRECVEAGGCLLSQRLRGQLVEAARRLGGKKLDEAGQEKELLAVLEHHLPQFFLYEAKCA 619
MED+K L L NE P D C M+ DE NGS NE GE S+ V+FSRE PL G + + GA KK+KS + ++DSE G + KKL+RQDRIELGR+FQ AVS DWELAESLILLADPQTLND+LCISLDS+WFLST++EL+GITG+IKK+IANGAYDFTRAALRTSFLA+CVSACQSRTMSLADTV+VMA+RLHERLQECNGDEVLKAEA AKVQKFTEWALKCIGFHSRCQGN D + NS V+IQLQLSAFK FLDLAGN+LSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLL MLVDGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNA+ FLGPLMRAAERGC+ VVQWFVKRGCRDMELCLALTAATSSSQVE AAYLLPHVP HVL+ALS+EILKAAGERS GSLDGVAFLL+SDFLGDPAATYAVA+ I++SDD+ +AP+LR FL +HWSE AFLDGLREG+++YLN+V+ILKWG PICL DLP+ L+VA+AYLPLYRECV+AGGCLLSQRLRGQLVEAARRLG L E Q KELLAVLEH+LP F LY A
Sbjct: 1 MEDEKIYNGLPLVVNETNPRDPSCAQMDTDETANGSPNNEIAVFTSEKGEGSN--VLFSRETPLV--GKDPRMSGGSSWGA-KKLKSRMVSADSEIGKNEIIGHEKKLNRQDRIELGRLFQGAVSSHDWELAESLILLADPQTLNDALCISLDSIWFLSTKQELYGITGLIKKIIANGAYDFTRAALRTSFLAACVSACQSRTMSLADTVTVMAQRLHERLQECNGDEVLKAEASAKVQKFTEWALKCIGFHSRCQGNRDKVSHNSAVEIQLQLSAFKTFLDLAGNHLSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLGMLVDGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAIAFLGPLMRAAERGCMEVVQWFVKRGCRDMELCLALTAATSSSQVETAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLRSDFLGDPAATYAVADCIARSDDETIAPELRAFLWDHWSEAAFLDGLREGQEHYLNVVKILKWGGCPICLRDLPAPLRVAVAYLPLYRECVKAGGCLLSQRLRGQLVEAARRLGSGALKEVRQGKELLAVLEHYLPPFLLYAPSVA 623
BLAST of XM_017363586.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4D9G0 ((ankyrin repeat protein SKIP35-like {ECO:0000313|RefSeq:XP_016510021.1}))
HSP 1 Score: 966.452 bits (2497), Expect = 0.000e+0
Identity = 471/604 (77.98%), Postives = 526/604 (87.09%), Query Frame = 0
Match: A0A1S4D9G0 ((ankyrin repeat protein SKIP35-like {ECO:0000313|RefSeq:XP_016510021.1}))
HSP 1 Score: 966.452 bits (2497), Expect = 0.000e+0
Identity = 471/604 (77.98%), Postives = 526/604 (87.09%), Query Frame = 0
Query: 21 ECTDMEIDENENG--SMKNEGGEASDGDVVFSREGPLASDGHIG---MLENTCTCGASKKMKSTLATSDSETGSTDNGVPAKKLSRQDRIELGRMFQAAVSCRDWELAESLILLADPQTLNDSLCISLDSVWFLSTEEELFGITGIIKKVIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVSVMAERLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNGDDIYQNSPVQIQLQLSAFKIFLDLAGNNLSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLSMLVDGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMTFLGPLMRAAERGCLLVVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVPHHVLSALSVEILKAAGERSSGSLDGVAFLLKSDFLGDPAATYAVAESISKSDDDGVAPQLRDFLREHWSEGAFLDGLREGEDNYLNLVRILKWGESPICLGDLPSALKVAIAYLPLYRECVEAGGCLLSQRLRGQLVEAARRLGGKKLDEAGQEKELLAVLEHHLPQFFLYEAKCA 619
+C +ME++ E G + NE GE S+G+VVFSRE PL S + K+K+ L++SD E G + KKL+RQ+RIELGR+FQ AVSC DWELAESLILLADP TLND+LCI+LDS+WFLST+EEL+GITG+IKK+I+NGA+DFTRAALRTSFLASCVSACQSRTMSLADTV+VMA+RL ERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGN D + N+ V+IQLQLSAFK FLDLAGN+L+GKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLL MLV+GGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAM FLGPLMRAAERGC+ VV WFVKRGCRDMELCLALTAATSSSQVE+A YLLPHVP HVL+ALS+EILKAAGERS GSLDGVAFLL SDFLGDPAATYAVA+SI+K DD+ VAP+LR FLREHWSE AF DGLR+G+++YLN+VRILKWGESP+CLGDLP L+VAIAYLPLYRECV+AGGCLLSQRLRGQLVEAA+RL G L+E Q +ELLAVLEHH+P F + + A
Sbjct: 18 QCFEMEVESCETGIPGLNNENGEGSNGNVVFSRESPLVSKDFRSSAIVGGGGGCNCGVNKLKARLSSSDCEVGKNEKSGHEKKLNRQERIELGRLFQGAVSCHDWELAESLILLADPLTLNDALCIALDSIWFLSTQEELYGITGLIKKIISNGAFDFTRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLRERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNRDKVGHNAAVEIQLQLSAFKTFLDLAGNHLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMAFLGPLMRAAERGCIQVVDWFVKRGCRDMELCLALTAATSSSQVEVAEYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLSSDFLGDPAATYAVADSIAKLDDEAVAPELRSFLREHWSEAAFSDGLRQGQEHYLNIVRILKWGESPVCLGDLPGPLRVAIAYLPLYRECVKAGGCLLSQRLRGQLVEAAKRLDGVVLEEVNQGRELLAVLEHHIPPFLVNASSAA 621
BLAST of XM_017363586.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7VET5 ((ankyrin repeat protein SKIP35-like {ECO:0000313|RefSeq:XP_009760838.1, ECO:0000313|RefSeq:XP_009760839.1}))
HSP 1 Score: 966.452 bits (2497), Expect = 0.000e+0
Identity = 471/604 (77.98%), Postives = 526/604 (87.09%), Query Frame = 0
Match: A0A1U7VET5 ((ankyrin repeat protein SKIP35-like {ECO:0000313|RefSeq:XP_009760838.1, ECO:0000313|RefSeq:XP_009760839.1}))
HSP 1 Score: 966.452 bits (2497), Expect = 0.000e+0
Identity = 471/604 (77.98%), Postives = 526/604 (87.09%), Query Frame = 0
Query: 21 ECTDMEIDENENG--SMKNEGGEASDGDVVFSREGPLASDGHIG---MLENTCTCGASKKMKSTLATSDSETGSTDNGVPAKKLSRQDRIELGRMFQAAVSCRDWELAESLILLADPQTLNDSLCISLDSVWFLSTEEELFGITGIIKKVIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVSVMAERLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNGDDIYQNSPVQIQLQLSAFKIFLDLAGNNLSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLSMLVDGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMTFLGPLMRAAERGCLLVVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVPHHVLSALSVEILKAAGERSSGSLDGVAFLLKSDFLGDPAATYAVAESISKSDDDGVAPQLRDFLREHWSEGAFLDGLREGEDNYLNLVRILKWGESPICLGDLPSALKVAIAYLPLYRECVEAGGCLLSQRLRGQLVEAARRLGGKKLDEAGQEKELLAVLEHHLPQFFLYEAKCA 619
+C +ME++ E G + NE GE S+G+VVFSRE PL S + K+K+ L++SD E G + KKL+RQ+RIELGR+FQ AVSC DWELAESLILLADP TLND+LCI+LDS+WFLST+EEL+GITG+IKK+I+NGA+DFTRAALRTSFLASCVSACQSRTMSLADTV+VMA+RL ERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGN D + N+ V+IQLQLSAFK FLDLAGN+L+GKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLL MLV+GGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAM FLGPLMRAAERGC+ VV WFVKRGCRDMELCLALTAATSSSQVE+A YLLPHVP HVL+ALS+EILKAAGERS GSLDGVAFLL SDFLGDPAATYAVA+SI+K DD+ VAP+LR FLREHWSE AF DGLR+G+++YLN+VRILKWGESP+CLGDLP L+VAIAYLPLYRECV+AGGCLLSQRLRGQLVEAA+RL G L+E Q +ELLAVLEHH+P F + + A
Sbjct: 18 QCFEMEVESCETGIPGLNNENGEGSNGNVVFSRESPLVSKDFRSSAIVGGGGGCNCGVNKLKARLSSSDCEVGKNEKSGHEKKLNRQERIELGRLFQGAVSCHDWELAESLILLADPLTLNDALCIALDSIWFLSTQEELYGITGLIKKIISNGAFDFTRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLRERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNRDKVGHNAAVEIQLQLSAFKTFLDLAGNHLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMAFLGPLMRAAERGCIQVVDWFVKRGCRDMELCLALTAATSSSQVEVAEYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLSSDFLGDPAATYAVADSIAKLDDEAVAPELRSFLREHWSEAAFSDGLRQGQEHYLNIVRILKWGESPVCLGDLPGPLRVAIAYLPLYRECVKAGGCLLSQRLRGQLVEAAKRLDGVVLEEVNQGRELLAVLEHHIPPFLVNASSAA 621
BLAST of XM_017363586.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1B2N0 ((F-box/ankyrin repeat protein SKIP35 {ECO:0000313|EnsemblPlants:PGSC0003DMT400035669}))
HSP 1 Score: 965.296 bits (2494), Expect = 0.000e+0
Identity = 470/609 (77.18%), Postives = 527/609 (86.54%), Query Frame = 0
Match: M1B2N0 ((F-box/ankyrin repeat protein SKIP35 {ECO:0000313|EnsemblPlants:PGSC0003DMT400035669}))
HSP 1 Score: 965.296 bits (2494), Expect = 0.000e+0
Identity = 470/609 (77.18%), Postives = 527/609 (86.54%), Query Frame = 0
Query: 21 ECTDMEIDENENGSM---------KNEGGEASDGDVVFSREGPLASDG-HIGMLENTCTCGASKKMKSTLATSDSETGSTDNGVPAKKLSRQDRIELGRMFQAAVSCRDWELAESLILLADPQTLNDSLCISLDSVWFLSTEEELFGITGIIKKVIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVSVMAERLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNGDDIYQNSPVQIQLQLSAFKIFLDLAGNNLSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLSMLVDGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMTFLGPLMRAAERGCLLVVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVPHHVLSALSVEILKAAGERSSGSLDGVAFLLKSDFLGDPAATYAVAESISKSDDDGVAPQLRDFLREHWSEGAFLDGLREGEDNYLNLVRILKWGESPICLGDLPSALKVAIAYLPLYRECVEAGGCLLSQRLRGQLVEAARRLGGKKLDEAGQEKELLAVLEHHLPQFFLYEAKCA 619
+C +ME++ E G++ +E GE S+G++VFSRE PL G + C CG +K +K+ +A+SD E G + KKL+RQ+RIELGR+FQ AVSC DWELAESLILLADPQTLND+LCI+LDSVWFLST++EL+GITG+IKK+I+NGA+DFTRAALRTSFLASCVSACQSRTMSL DTV+VMA+RLHERLQECNGDE+LKAEAGAKVQKFTEWALKCIGFHSRCQGN D + N V+IQLQLSAFK FLDLAGN+LSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLL MLV+GGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAM FLGPLMRAAERG + VV WFVKRGCRDMELCLALTAATSSSQVE+A YLLPHVP HVL+ALS+EILKAAGERSSGSLDGVAFLL SDFLGDP ATYAVA+SI+KSDD+ VAP LR FLREHWSE AF DGLR+G+++Y NLVRI+KWGESP+CL D+P L++AIAYLPLYRECV+AGGCLLSQRL+GQLVEAA+RL G L+E Q +ELLAVLEHHLP F A A
Sbjct: 27 QCFEMEVESCETGTLGVSNESVVFPSENGEGSNGNMVFSRESPLVRKGFRSSAVVGGCNCGVNK-LKARMASSDGEIGKNEKSGAEKKLNRQERIELGRLFQGAVSCHDWELAESLILLADPQTLNDALCIALDSVWFLSTQQELYGITGLIKKIISNGAFDFTRAALRTSFLASCVSACQSRTMSLTDTVTVMAQRLHERLQECNGDEILKAEAGAKVQKFTEWALKCIGFHSRCQGNRDRVGHNPAVEIQLQLSAFKTFLDLAGNHLSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMAFLGPLMRAAERGSMQVVDWFVKRGCRDMELCLALTAATSSSQVEVARYLLPHVPQHVLTALSIEILKAAGERSSGSLDGVAFLLSSDFLGDPIATYAVADSIAKSDDEAVAPALRSFLREHWSEAAFSDGLRQGQEHYCNLVRIIKWGESPVCLRDIPGPLRIAIAYLPLYRECVKAGGCLLSQRLKGQLVEAAKRLDGVVLEEVKQGRELLAVLEHHLPPFLHSNASNA 634
BLAST of XM_017363586.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AR37 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8532192.1}))
HSP 1 Score: 963.755 bits (2490), Expect = 0.000e+0
Identity = 486/628 (77.39%), Postives = 535/628 (85.19%), Query Frame = 0
Match: A0A5J5AR37 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8532192.1}))
HSP 1 Score: 963.755 bits (2490), Expect = 0.000e+0
Identity = 486/628 (77.39%), Postives = 535/628 (85.19%), Query Frame = 0
Query: 1 MEDKKALMELD--LR---NEFMPLDECTDMEIDENENGSMKNE----GGEASDGDVVFSREGPLASDGHIGMLENTCTCGASKKMKSTLATSDSETGSTDNGVPAKKLSRQDRIELGRMFQAAVSCRDWELAESLILLADPQTLNDSLCISLDSVWFLSTEEELFGITGIIKKVIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVSVMAERLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNGDDIYQNSPVQIQLQLSAFKIFLDLAGNNLSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLSMLVDGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMTFLGPLMRAAERGCLLVVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVPHHVLSALSVEILKAAGERSSGSLDGVAFLLKSDFLGDPAATYAVAESISKSDDDGVAPQLRDFLREHWSEGAFLDGLREGEDNYLNLVRILKWGESPICLGDLPSALKVAIAYLPLYRECVEAGGCLLSQRLRGQLVEAARRLGGKKLDEAGQEKELLAVLEHHLPQFFLYEAKCA 619
MED+K + + LR NE P CT ME + NGS NE E G+VVFSRE PL S + C+CGA KK+KS + T+ SETG + AKKLSRQDRIELGR+FQ AVS RDWELAESLILLADPQTLND+LCISLDS+WFL TE+EL+GITG+IKK++ANGAYDFTRAALRTSFLAS VSACQSRTM+LADTV+VMA+RLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSR QGN + NS V+IQLQLSAFK FLDLAGN+L+GKDFTEAFDAACFPLTLFSSSFDPGWA ISATAIQGLL MLV+GGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNA+ FLGPLMRA+ERGC+ VVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVP HVL+ALS+EILKAAGERS GSLDGVAFLL+SDFLGD AATYAVA+SI++SDDD V +LR FL+EHWSE A+LDG+REG+++YLN+VRILKWG SPICL DLP L+VAIAYLPLYRECV+AGGCLLSQRLRGQLVEA RRLG ++E Q KE+LAVLEHHLP F LY A
Sbjct: 1 MEDEKISIPRNNGLRMVLNETNP--SCTQMETCDTGNGSPNNEISVFPSENGGGNVVFSREAPLVSKDP--RISRGCSCGA-KKLKSRMVTAVSETGKNEKIGHAKKLSRQDRIELGRLFQGAVSSRDWELAESLILLADPQTLNDALCISLDSIWFLCTEQELYGITGLIKKIVANGAYDFTRAALRTSFLASFVSACQSRTMNLADTVNVMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRYQGNRNKANHNSAVEIQLQLSAFKTFLDLAGNHLTGKDFTEAFDAACFPLTLFSSSFDPGWAFEISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAIAFLGPLMRASERGCMQVVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLRSDFLGDAAATYAVADSIARSDDDAVTHELRAFLQEHWSEAAYLDGVREGQEHYLNMVRILKWGGSPICLRDLPGPLRVAIAYLPLYRECVKAGGCLLSQRLRGQLVEAVRRLGSGAMEEKSQGKEVLAVLEHHLPPFLLYAPNAA 623
BLAST of XM_017363586.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B8M3 ((Putative ankyrin repeat protein SKIP35-like {ECO:0000313|EMBL:MPA64061.1}))
HSP 1 Score: 963.755 bits (2490), Expect = 0.000e+0
Identity = 484/614 (78.83%), Postives = 524/614 (85.34%), Query Frame = 0
Match: A0A5B7B8M3 ((Putative ankyrin repeat protein SKIP35-like {ECO:0000313|EMBL:MPA64061.1}))
HSP 1 Score: 963.755 bits (2490), Expect = 0.000e+0
Identity = 484/614 (78.83%), Postives = 524/614 (85.34%), Query Frame = 0
Query: 14 NEFMPLDECTDMEIDENENGSMKNE-------GGEASDGDVVFSREGPLAS-DGHIGMLENTCTCGASKKMKSTLATSDSETGSTDNGVPAKKLSRQDRIELGRMFQAAVSCRDWELAESLILLADPQTLNDSLCISLDSVWFLSTEEELFGITGIIKKVIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVSVMAERLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNGDDIYQNSPVQIQLQLSAFKIFLDLAGNNLSGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLSMLVDGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAMTFLGPLMRAAERGCLLVVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVPHHVLSALSVEILKAAGERSSGSLDGVAFLLKSDFLGDPAATYAVAESISKSDDDGVAPQLRDFLREHWSEGAFLDGLREGEDNYLNLVRILKWGESPICLGDLPSALKVAIAYLPLYRECVEAGGCLLSQRLRGQLVEAARRLGGKKLDEAGQEKELLAVLEHHLPQFFLYEAKCA 619
NE P C ME DE NGS NE GE S+ VVFSRE PL S D I T C +KK+KS +AT+ ETG + KKLSRQDRIELGR+FQ AVS DWELAESLILLADPQTLND+LCISLDS+WFLST++EL GITG+IKK+IANGAYDFTRAALRTSFLASCVSACQSRTMSLADTV+VMA+RLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGN D + NS V+IQLQLSAFK FLDL GN+L+GKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLL MLV+GGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNA+ FLGPLMRAAERGC+ VVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVP HVL+ALS+EILKAAGERS GSLDGVAFLL+SDFLGDPAATYAVA+SI++SDD+ VA +LR FLREHWSE AFLDGLREG+++YLN+VRILKWG SPICL DLP+ L+VA+AYLPLYRECV+AGGCLLSQR RGQLVEAARRLG L+EA EH+LP F LY A
Sbjct: 22 NETNP--SCAQMETDETGNGSPNNEIAVFTSENGEGSN--VVFSREAPLVSKDPRI-----TGGCSCAKKLKSRMATAIPETGKNEKIGHEKKLSRQDRIELGRLFQGAVSSHDWELAESLILLADPQTLNDALCISLDSIWFLSTQQELCGITGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGNRDKVNHNSAVEIQLQLSAFKTFLDLVGNHLTGKDFTEAFDAACFPLTLFSSSFDPGWASGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAIAFLGPLMRAAERGCMQVVQWFVKRGCRDMELCLALTAATSSSQVEIAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLRSDFLGDPAATYAVADSIARSDDEAVAHELRAFLREHWSEAAFLDGLREGQEHYLNMVRILKWGGSPICLRDLPAPLRVAVAYLPLYRECVKAGGCLLSQRQRGQLVEAARRLGSGALEEA----------EHYLPPFLLYATSVA 616
| Match Name | Stats | Description |
|---|---|---|
| A0A6I9STR5 | E-Value: 0.000e+0, PID: 83.33 | (ankyrin repeat protein SKIP35 {ECO:0000313|RefSeq... [more] |
| A0A5B7B711 | E-Value: 0.000e+0, PID: 79.48 | (Putative ankyrin repeat protein SKIP35-like {ECO:... [more] |
| A0A2G9FWE2 | E-Value: 0.000e+0, PID: 80.53 | (Uncharacterized protein {ECO:0000313|EMBL:PIM9737... [more] |
| Q53HY3 | E-Value: 0.000e+0, PID: 78.76 | (Uncharacterized protein mc307 {ECO:0000313|EMBL:C... [more] |
| A0A5J5ADF9 | E-Value: 0.000e+0, PID: 77.71 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8527... [more] |
| A0A1S4D9G0 | E-Value: 0.000e+0, PID: 77.98 | (ankyrin repeat protein SKIP35-like {ECO:0000313|R... [more] |
| A0A1U7VET5 | E-Value: 0.000e+0, PID: 77.98 | (ankyrin repeat protein SKIP35-like {ECO:0000313|R... [more] |
| M1B2N0 | E-Value: 0.000e+0, PID: 77.18 | (F-box/ankyrin repeat protein SKIP35 {ECO:0000313|... [more] |
| A0A5J5AR37 | E-Value: 0.000e+0, PID: 77.39 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8532... [more] |
| A0A5B7B8M3 | E-Value: 0.000e+0, PID: 78.83 | (Putative ankyrin repeat protein SKIP35-like {ECO:... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |