Resource Type:
Polypeptide
Name:
XM_017364421.1
Identifier:
XM_017364421.1-protein
Sequence:
MAVVAKLHLFSNLPSNPPPQPQPTPQSHRPPKPPIPIPKYPPPKPKKPPT
PPNPAFKTHHNRSKYYKPVKQGVLASDDGRTILIGDSGVSYQLPGAPFEF
QFSYSETPKVKPLAIREPAFLPFAPPTMNRPWTGKAPMKKAKRNVRLFGS
GEEESDGVRRMEMRGGYEVKELFGGELRPRNEVLGRPLSKAEARELIKPY
LSSNRQVNLGRDGLTHNMLELIHTHWRREPICKVRSLGVPTVDMNNVCRC
LEEKTGGKIIFRVGGIAYLFRGRNYDPRNRPRYPVMLWKPATPVYPKLIQ
EAPEGLTKAEADVFREKGKKLLPICKLAKNGVYATLVRDVRSAFEECAIV
KINCTGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGHDWKSMYKRS
PKAPSPVHDTTANDQESGSRKVQLSPKMMSLWSRAIESNQAMVLDDLGLG
PDALLEKVEEFERTSQATVHSFPALILPSEDVSGNRNEGPEEESSLDDGG
YQSYDSEYDDDSDINDSFDGMDSSAPLGSLPIDLIAKQFSDSE
Sequence Length:
543
Sequence Checksum:
bc26a12c1a44a4789164cebcb012b694
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364421.1, derives from mRNA, XM_017364421.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AHH9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8529598.1}))
HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 361/572 (63.11%), Postives = 430/572 (75.17%), Query Frame = 0
Match: A0A5J5AHH9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8529598.1}))
HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 361/572 (63.11%), Postives = 430/572 (75.17%), Query Frame = 0
Query: 1 MAVVAKLHLFSNLPSNPPPQ-------PQPTPQSHRPPKPPIPIPKYPPPKPKKPPTPPNPAFKTHHNRSKYYKPVKQGVLASDDGRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMNRPWTGKAPMKKAKRNVRLFGSGEE---ESDGVRRMEMRGGYEVKELFGGELRPRNEVLGRPLSKAEARELIKPYLSSNRQVNLGRDGLTHNMLELIHTHWRREPICKVRSLGVPTVDMNNVCRCLEEKTGGKIIFRVGGIAYLFRGRNYDPRNRPRYPVMLWKPATPVYPKLIQEAPEGLTKAEADVFREKGKKLLPICKLAKNGVYATLVRDVRSAFEECAIVKINCTGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGHDWKSMYKRSPKAPSPVHDTTAND-----------QESGSRKVQLSPKMMSLWSRAIESNQAMVLDDLGLGPDALLEKVEEFERTSQATVHSFPALILPSEDVSGNRNE----GPEEESSLDDGGYQSYDSEYDDDSD----INDSFDGMDSSAPLGSLPIDLIAKQFSDSE 543
+A ++ L+LFS LPS+PP P P P PP+ K P P P NPAFKT H R+KY+KPV +GV++SD R+++IG+SGVSY LPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPP+M RPWTGKAPMKK+KR +RLF S E++G +++EM YE+ + F E++ R EVLGRPLS+AE R L+KP+LSSNRQVNLGRDGLTHNML+LIHTHW R P+CKVR LGVPTVDMNNVCR LEEKTGGKII RVGG+ YLFRGRNYD R RP+YPVMLWKPATPVYPKLIQEAPEGLTKAEAD R KGK LLPICKL KNGVY++LV+DV++AFE +VKI C GMHASDYKK+GAKLKELVPCVLLSFD+EQILMWRG W+SMY+ +P A S AND +S ++ V SPKMMSLW RAIES++A+VLD++ LGPDALL+ VEEFE SQ T HS+P ++L SED +G+ GP +E+ +DG Y D + D+D D INDSFDG +SS PLGSLP+DL+ Q S++E
Sbjct: 4 LATLSGLNLFSTLPSSPPSNDPNSPSHPPPPPIPIPKYPPPLKSQKSPKRPPLPPKPNSNPAFKTFHRRTKYHKPVTEGVISSDGDRSVVIGESGVSYLLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPSMPRPWTGKAPMKKSKRKIRLFDSFNPPPPEANGAKQLEMLRPYELGK-FPTEVKTRQEVLGRPLSRAEIRLLLKPHLSSNRQVNLGRDGLTHNMLDLIHTHWMRRPVCKVRCLGVPTVDMNNVCRRLEEKTGGKIIHRVGGVVYLFRGRNYDHRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKAEADELRMKGKFLLPICKLRKNGVYSSLVKDVKNAFEGSLLVKIGCKGMHASDYKKLGAKLKELVPCVLLSFDEEQILMWRGQGWRSMYQGAPLASSLAASNVANDFNCSGSNNTDFHKSETKTVSSSPKMMSLWKRAIESSKALVLDEIDLGPDALLKMVEEFEDMSQVTEHSYPVVVLSSEDGTGSSRTMHEGGPRDENYGEDGTYGYDDDDEDEDEDDEYYINDSFDGKESSVPLGSLPVDLMTTQLSENE 574
BLAST of XM_017364421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GWP0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5945193.1}))
HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 340/514 (66.15%), Postives = 405/514 (78.79%), Query Frame = 0
Match: A0A7J7GWP0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5945193.1}))
HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 340/514 (66.15%), Postives = 405/514 (78.79%), Query Frame = 0
Query: 44 KPKKPPTP---PNPAFKTHHNRSKYYKPVKQGVLASDDGRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMNRPWTGKAPMKKAKRN--VRLFGSGEEE---SDGVRRMEMRGGYEVKELFGGELRPRNEVLGRPLSKAEARELIKPYLSSNRQVNLGRDGLTHNMLELIHTHWRREPICKVRSLGVPTVDMNNVCRCLEEKTGGKIIFRVGGIAYLFRGRNYDPRNRPRYPVMLWKPATPVYPKLIQEAPEGLTKAEADVFREKGKKLLPICKLAKNGVYATLVRDVRSAFEECAIVKINCTGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGHDWKSMYKRSPKAPSPVHDTTAND---QESGSRKVQLSPKMMSLWSRAIESNQAMVLDDLGLGPDALLEKVEEFERTSQATVHSFPALILPSEDVSGNRNEGPEEESSLDDGGYQSYDSEYDDDSDIN-----DSFDGMDSSAPLGSLPIDLIAKQFSD 541
K + PPTP NPAFKT H+RSKYYKPV++GV++SD R++++GDSGVSY LPGAPFEFQ+SYSETPK KPLAIREPAFLPFAPP+M RPWTGKAP+KK K+ +RLF S E +GV+R+EM Y + + F EL+PR EV+G+PL+KAE REL++P++SSNRQVNLGRDGLTHNMLEL+HTHW+R P+CKVR LGVPTVDM+NVCRCLEEKTGGKII RVGGI YLFRGRNYD R RP+YPVMLWKPA P+YPKLIQEAPEGLTK EAD R+KGK LLPICKLAKNGVY +LVRDVR+AFE +VKI+C GMHASDYKKIGAKLKELVPCVLLSFD+EQILMWRG DW+SMY ++P A SP AN +S V SPKMMSLW RAIE+++A++LD +GLGPD LL+K+EEFE SQAT HS+PA++L ED G + E +D G + DDD D++ F+ M+SS PLGSLP+DLIAK+ S+
Sbjct: 46 KSQTPPTPKPTSNPAFKTFHHRSKYYKPVREGVISSDGDRSVVVGDSGVSYLLPGAPFEFQYSYSETPKSKPLAIREPAFLPFAPPSMPRPWTGKAPLKKEKKEKKIRLFDSLEPSPMGMNGVKRLEMAKPYRLGD-FPVELKPRKEVIGKPLTKAEIRELLRPHISSNRQVNLGRDGLTHNMLELVHTHWKRRPVCKVRCLGVPTVDMDNVCRCLEEKTGGKIIHRVGGIVYLFRGRNYDHRTRPQYPVMLWKPAAPIYPKLIQEAPEGLTKVEADQLRKKGKNLLPICKLAKNGVYTSLVRDVRNAFEGSPLVKIDCKGMHASDYKKIGAKLKELVPCVLLSFDNEQILMWRGQDWESMYPQAPYASSPADSDAANGFNCSDSDPNAVTSSPKMMSLWKRAIETSKALLLDKIGLGPDDLLKKMEEFEDLSQATEHSYPAVVLSGED--GTDSSRAEYRFHNEDHGEDEDYNHDDDDDDVDDEYYLSDFEEMESSVPLGSLPVDLIAKRPSE 556
BLAST of XM_017364421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BT68 ((Uncharacterized protein {ECO:0000313|EMBL:MPA71688.1}))
HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0
Identity = 361/566 (63.78%), Postives = 432/566 (76.33%), Query Frame = 0
Match: A0A5B7BT68 ((Uncharacterized protein {ECO:0000313|EMBL:MPA71688.1}))
HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0
Identity = 361/566 (63.78%), Postives = 432/566 (76.33%), Query Frame = 0
Query: 1 MAVVAKL---HLFSNLPSNPPPQPQPTPQSHRPPKPPIPIPKYPPPKPKKPPTP-----PNPAFKTHHNRSKYYKPVKQGVLASDDGRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMNRPWTGKAPMKKAKRNVRLFGSGEE---ESDGVRRMEMRGGYEVKELFGGELRPRNEVLGRPLSKAEARELIKPYLSSNRQVNLGRDGLTHNMLELIHTHWRREPICKVRSLGVPTVDMNNVCRCLEEKTGGKIIFRVGGIAYLFRGRNYDPRNRPRYPVMLWKPATPVYPKLIQEAPEGLTKAEADVFREKGKKLLPICKLAKNGVYATLVRDVRSAFEECAIVKINCTGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGHDWKSMYKRSPKAPSPVHDTTAND-----------QESGSRKVQLSPKMMSLWSRAIESNQAMVLDDLGLGPDALLEKVEEFERTSQATVHSFPALILPSEDVSG-NRNE---GPEEESSLDDGGYQSYDSEYDDDSD---INDSFDGMDSSAPLGSLPIDLIAK 537
MA++A L +LFS LPS PP P SH PP P PP K +K P NPAFKT H R+KY+KPV++GV++SD R+++IG+SG+SY LPGAPFEFQFSYSETPK KPLAIREPAFLPFAPPTM RPWTGKAPMKK+K+ + LF S E++GV+++EM+G Y++ + F E++ R EVLGRPL++ E R L+KPYLSSNRQ+NLGRDGLTHNMLELIHTHW+R+P+CKVR LGVPTVDMNN+CR LEEKTGGKII RVGG+ YLFRGRNYD RP+YPVMLWKPATPVYPKLIQEAPEGLTKAEAD R KGK LLPICKL KNGVY +LV+DVR+AFE +VKI+C GMHASDYKK+GAKLKELVPCVLLSFD+EQILMWRG WKSMY +P A SP AND +S ++ V SP+MMSLW RAIES++A++LD++ LGPDALL+KV+EFE SQAT HS+P L+ SED +G +R E GP +E +D Y SY+ DD+ D I+DSFDGM+SS PLGSLP+D I +
Sbjct: 1 MAILAALSSPNLFSTLPSTPPSN-DPNSTSHPPPPPIPIPKYPPPLKSQKHPPQPPKPNSNPAFKTFHRRTKYHKPVREGVISSDGDRSVVIGESGLSYLLPGAPFEFQFSYSETPKAKPLAIREPAFLPFAPPTMPRPWTGKAPMKKSKKKIPLFDSFNPPPPETNGVKQLEMQGPYQLGK-FPAEVKTRGEVLGRPLTRVEIRALLKPYLSSNRQINLGRDGLTHNMLELIHTHWKRQPVCKVRCLGVPTVDMNNICRRLEEKTGGKIIHRVGGVVYLFRGRNYDHHTRPQYPVMLWKPATPVYPKLIQEAPEGLTKAEADELRMKGKDLLPICKLRKNGVYISLVKDVRNAFEGSPLVKIDCRGMHASDYKKLGAKLKELVPCVLLSFDEEQILMWRGQGWKSMYLGAPSASSPAASNVANDFKCSGSFNTDFHKSDTKTVSSSPRMMSLWKRAIESSKALLLDEIDLGPDALLKKVDEFEDMSQATEHSYPVLVSSSEDGTGSSRTEYEGGPRDEDYGEDETY-SYNDVDDDEDDEYYISDSFDGMESSVPLGSLPVDSITR 563
BLAST of XM_017364421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FN44 ((RNA-binding CRS1 / YhbY (CRM) domain-containing protein {ECO:0000313|EMBL:GFZ00071.1}))
HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 350/563 (62.17%), Postives = 411/563 (73.00%), Query Frame = 0
Match: A0A7J0FN44 ((RNA-binding CRS1 / YhbY (CRM) domain-containing protein {ECO:0000313|EMBL:GFZ00071.1}))
HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 350/563 (62.17%), Postives = 411/563 (73.00%), Query Frame = 0
Query: 1 MAVVAKL---HLFSNLPSNPPPQPQPTPQSHRPPKPPIPI--------PKYPPPKPKKPPTPPNPAFKTHHNRSKYYKPVKQGVLASDDGRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMNRPWTGKAPMKKAKRN-----VRLFGSGEEE-SDGVRRMEMRGGYEVKELFGGELRPRNEVLGRPLSKAEARELIKPYLSSNRQVNLGRDGLTHNMLELIHTHWRREPICKVRSLGVPTVDMNNVCRCLEEKTGGKIIFRVGGIAYLFRGRNYDPRNRPRYPVMLWKPATPVYPKLIQEAPEGLTKAEADVFREKGKKLLPICKLAKNGVYATLVRDVRSAFEECAIVKINCTGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGHDWKSMYKRSPKAPSPVH-DTTANDQESGSRK----------VQLSPKMMSLWSRAIESNQAMVLDDLGLGPDALLEKVEEFERTSQATVHSFPALILPSEDVSGNRNEGPEEESSLDDGGYQSYDSEYDDDSDINDSFDGMDSSAPLGSLPIDLI 535
M ++AKL +LFS LPS P P+P P SH P PP + PP P AFKTHH+RSKY+KPVK GV++SD R++++G+SGVSY LPGAPFEF+FSYSETPK KP+AIREP FLPFAPP+M RPWTGKAPMK AK V LF S + E S GV R E Y++ E+RPR EV+G+ L++AE REL+KP++SSNRQVNLGRDGLTHNMLEL+HTHW+R P+CKVR LGVPT+DM+NVCRCLEEKTGGKII RVGGI YLFRGRNYD R RP+YP+MLWKPATPVYPKLIQEAPEGLTKAEAD R+KGK L PICKLAKNGVY +LVRDVR+AFE +VKINC G+HASDYKKIGAKLKELVPCVLLSFDDEQILMWRG DWKSMY P SP + DT SGSR V SPKMMSLW RAIE+++A++LD++ L PD LLEKVEEFE SQAT HS+ AL+ +ED G N+ +E D Y D + DD+ +++SF+ +SS P GSLP+D I
Sbjct: 1 MEILAKLSNPNLFSTLPSTPHPKP---PFSHVLPHPPPIPIPKYPPLKSRKHPPPHSPKPQSSTTAFKTHHHRSKYHKPVKDGVISSDGDRSVVVGESGVSYLLPGAPFEFKFSYSETPKAKPVAIREPPFLPFAPPSMARPWTGKAPMKSAKEKKMKKKVALFESVDSEGSSGVMRFETARPYQLGNYAAAEVRPREEVIGKSLTRAEIRELLKPHISSNRQVNLGRDGLTHNMLELVHTHWKRRPVCKVRCLGVPTIDMDNVCRCLEEKTGGKIIHRVGGIVYLFRGRNYDHRTRPQYPIMLWKPATPVYPKLIQEAPEGLTKAEADELRKKGKDLSPICKLAKNGVYTSLVRDVRNAFEGSILVKINCKGLHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGQDWKSMYPEPPSVSSPANSDTAIGFNFSGSRSADSHKSDPKTVTSSPKMMSLWERAIETSKAVLLDEICLDPDTLLEKVEEFEGLSQATEHSYQALVFSTEDGIGIGNDNHDE-----DENYSHDDDDNDDEYYLSNSFEQTESSVPFGSLPVDFI 555
BLAST of XM_017364421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TDH9 ((Uncharacterized protein {ECO:0000313|EMBL:CBI28552.3}))
HSP 1 Score: 647.506 bits (1669), Expect = 0.000e+0
Identity = 348/561 (62.03%), Postives = 414/561 (73.80%), Query Frame = 0
Match: D7TDH9 ((Uncharacterized protein {ECO:0000313|EMBL:CBI28552.3}))
HSP 1 Score: 647.506 bits (1669), Expect = 0.000e+0
Identity = 348/561 (62.03%), Postives = 414/561 (73.80%), Query Frame = 0
Query: 1 MAVVAKL----HLFSNLPSNPPPQPQPTPQSHRPPKPPIPIPK-YPPPKPKKPPT-PPNPAFKTHHNRSKYYKPVKQGVLASDDGRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMNRPWTGKAPMKKAKRNVRLFGSGEE---ESDGVRRMEMRGGYEVKELFGGELRPRNEVLGRPLSKAEARELIKPYLSSNRQVNLGRDGLTHNMLELIHTHWRREPICKVRSLGVPTVDMNNVCRCLEEKTGGKIIFRVGGIAYLFRGRNYDPRNRPRYPVMLWKPATPVYPKLIQEAPEGLTKAEADVFREKGKKLLPICKLAKNGVYATLVRDVRSAFEECAIVKINCTGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGHDWKSMYKRSPKAPSP-VHDTTANDQESG----------SRKVQLSPKMMSLWSRAIESNQAMVLDDLGLGPDALLEKVEEFERTSQATVHSFPALILPSEDVSGNRNEGPEEESSLDDGGYQSYDSEYDDDSDINDSFDGMDSSAPLGSLPIDLIAKQFSD 541
M ++A L LFS+LP PPP T +PP P P K +PPT PP PAFKT H+RSKYYKPV GV+ASD R+++IG+SGVSY LPGAPFEFQFSYSETPK KPLAIREPAFLPFAPPTM RPWTGKAP+KK+K+ + LF S + GV+R+EM G + + + F E R R E+LG PLSKAE R L+KPYLS NRQVNLGRDGLTHNMLELIH+HW+R+ +CKVR GVPT+DM+NVC LEEKTGGKII RVGG+ YLFRGRNY+ R RP+YPVMLWKPA PVYPKLIQEAPEGLTK EAD R KGK L+PIC+L KNGVY +LV+DVR AFE +VKI+C GMHASDYKKIGAKLKELVPCVLLSFDDEQIL WRGH WKSMY+ +P P V D + + SG ++ V SPKMMSLW AIES++A++LD+ GLGPDALL+ VEEFE SQAT HS+PAL++ SED +G E +S D + Y+ + DD+ +N+S + M+S PLGSLP+DL+AKQ +
Sbjct: 1 MVILATLPGSSSLFSSLPQGPPPNDSTTSTPPQPPIPIPKYPPPLKSQKSSRPPTKPPTPAFKTVHHRSKYYKPVSDGVIASDGDRSVVIGESGVSYLLPGAPFEFQFSYSETPKAKPLAIREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPPGTKGVKRVEMPGPFPLGK-FPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGHGWKSMYQGAPSFLIPVVADVASGLEGSGIPKSNHHRLDTKAVSASPKMMSLWKSAIESSKALLLDETGLGPDALLKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEYEGYNSEDYSEDEMYNDDDDDEYLVNESLEEMESPVPLGSLPVDLLAKQLGE 560
BLAST of XM_017364421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438E6A7 ((CRS2-associated factor 2, chloroplastic {ECO:0000313|EMBL:RVW43317.1}))
HSP 1 Score: 645.58 bits (1664), Expect = 0.000e+0
Identity = 343/575 (59.65%), Postives = 411/575 (71.48%), Query Frame = 0
Match: A0A438E6A7 ((CRS2-associated factor 2, chloroplastic {ECO:0000313|EMBL:RVW43317.1}))
HSP 1 Score: 645.58 bits (1664), Expect = 0.000e+0
Identity = 343/575 (59.65%), Postives = 411/575 (71.48%), Query Frame = 0
Query: 1 MAVVAKL----HLFSNLPSNPPPQPQPTP----------------QSHRPPKPPIPIPKYPPPKPKKPPTPPNPAFKTHHNRSKYYKPVKQGVLASDDGRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMNRPWTGKAPMKKAKRNVRLFGSGEE---ESDGVRRMEMRGGYEVKELFGGELRPRNEVLGRPLSKAEARELIKPYLSSNRQVNLGRDGLTHNMLELIHTHWRREPICKVRSLGVPTVDMNNVCRCLEEKTGGKIIFRVGGIAYLFRGRNYDPRNRPRYPVMLWKPATPVYPKLIQEAPEGLTKAEADVFREKGKKLLPICKLAKNGVYATLVRDVRSAFEECAIVKINCTGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGHDWKSMYKRSPKAPSP-VHDTTANDQESG----------SRKVQLSPKMMSLWSRAIESNQAMVLDDLGLGPDALLEKVEEFERTSQATVHSFPALILPSEDVSGNRNEGPEEESSLDDGGYQSYDSEYDDDSDINDSFDGMDSSAPLGSLPIDLIAKQFSD 541
M ++A L LFS+LP PPP T +S + P+PP P PAFKT H+RSKYYKPV GV+ASD R+++IG+SGVSY LPGAPFEFQFSYSETPK KPLAIREPAFLPFAPPTM RPWTGKAP+KK+K+ + LF S + GV+R+EM G + + + F E R R E+LG PLSKAE R L+KPYLS NRQVNLGRDGLTHNMLELIH+HW+R+ +CKVR GVPT+DM+NVC LEEKTGGKII RVGG+ YLFRGRNY+ R RP+YPVMLWKPA PVYPKLIQEAPEGLTK EAD R KGK L+PIC+L KNGVY +LV+DVR AFE +VKI+C GMHASDYKKIGAKLKELVPCVLLSFDDEQIL WRGH WKSMY+ +P P V D + + SG ++ V SPKMMSLW AIES++A++LD++GLGPDALL+ VEEFE SQAT HS+PAL++ SED +G E +S D + Y+ + DD+ +N+S + M+S PLGSLP+DL+AKQ +
Sbjct: 1 MVILATLPGSSSLFSSLPQGPPPNASTTSTPPQPPIPIPKYPPPLKSQKSPRPPT--------------KPSTPAFKTVHHRSKYYKPVSDGVIASDGDRSVVIGESGVSYLLPGAPFEFQFSYSETPKAKPLAIREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPPGTKGVKRVEMPGPFPLGK-FPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGHGWKSMYQGAPSFLIPVVADVASGLEGSGIPKSNHHRLDTKAVSASPKMMSLWKSAIESSKALLLDEIGLGPDALLKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEYEGCNSEDYSEDEMYNDDDDDEYLVNESLEEMESPVPLGSLPVDLLAKQLGE 560
BLAST of XM_017364421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9GWX1 ((Uncharacterized protein {ECO:0000313|EMBL:PIN09771.1}))
HSP 1 Score: 645.195 bits (1663), Expect = 0.000e+0
Identity = 326/512 (63.67%), Postives = 390/512 (76.17%), Query Frame = 0
Match: A0A2G9GWX1 ((Uncharacterized protein {ECO:0000313|EMBL:PIN09771.1}))
HSP 1 Score: 645.195 bits (1663), Expect = 0.000e+0
Identity = 326/512 (63.67%), Postives = 390/512 (76.17%), Query Frame = 0
Query: 44 KPKKPPTPP--NPAFKTHHNRSKYYKPVKQG---VLASDDGRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMNRPWTGKAPMKKAKRNVRLF------GSGEEESDGVRRMEMRGGYEVKELFGGELRPRNEVLGRPLSKAEARELIKPYLSSNRQVNLGRDGLTHNMLELIHTHWRREPICKVRSLGVPTVDMNNVCRCLEEKTGGKIIFRVGGIAYLFRGRNYDPRNRPRYPVMLWKPATPVYPKLIQEAPEGLTKAEADVFREKGKKLLPICKLAKNGVYATLVRDVRSAFEECAIVKINCTGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGHDWKSMYK-RSPKAPSPVHDTTANDQESGSRKVQLSPKMMSLWSRAIESNQAMVLDDLGLGPDALLEKVEEFERTSQATVHSFPALILPSEDVSGNRNEGPEEESSLDDGGYQSYDSEYDDDSDINDSFDGMDSSAPLGSLPIDLIAKQFSDSE 543
+PK P + NPAFKTHH+ SKYYKPVK G L + RT+++G+SG+SY LPGAPFEF +SYSETPK +P+A+REPAFLPFAPPTM RPWTGKAPMKK+KR ++LF GS + + G +R EM YE+ + +RPR EVLG PL++ E +E++KPYLSSN+QVNLGRDGLTHNMLELIHTHWRR+P+CKVR LGVPTVDM+N+CRCLEEKTGGK I RVGG+ YLFRGRNYD RP+ PVMLWKPATPVYPKLIQ+APEGLTK EAD R +GK LLPICKLAKNGVY +LVRDVR+AFE +VKI+C GMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRG WKSMY+ +P+ D+++ SG++ + SPKMMSLW RAIES +A VLD++ L PD LL KVEEFE SQA HS+PA+I + G+ E++ + S + E DD INDSF+ ++SSAP GSLPIDL+ KQ SD E
Sbjct: 50 RPKSPSSDSRNNPAFKTHHHNSKYYKPVKPGQKISLPGSENRTVVVGESGISYHLPGAPFEFMYSYSETPKAEPIAMREPAFLPFAPPTMPRPWTGKAPMKKSKRKIKLFEPLGGDGSDDNGNVGEKRYEMLRDYELGKF---TMRPREEVLGEPLTRWEIKEMLKPYLSSNKQVNLGRDGLTHNMLELIHTHWRRQPVCKVRCLGVPTVDMDNICRCLEEKTGGKSIHRVGGVVYLFRGRNYDHSKRPKLPVMLWKPATPVYPKLIQDAPEGLTKEEADELRMRGKSLLPICKLAKNGVYISLVRDVRTAFEGSILVKIDCKGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGRHWKSMYEDETPRRNVLSVDSSSITNISGAKSARSSPKMMSLWQRAIESGKASVLDEINLSPDELLSKVEEFETKSQAIEHSYPAIIY--TNTEGSSTAKAEKKDDDLEDESYSEEDECDDKFYINDSFEEVESSAPPGSLPIDLLTKQLSDDE 556
BLAST of XM_017364421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4L4S9 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9454623.1}) (Fragment))
HSP 1 Score: 643.654 bits (1659), Expect = 0.000e+0
Identity = 349/554 (63.00%), Postives = 417/554 (75.27%), Query Frame = 0
Match: A0A6A4L4S9 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9454623.1}) (Fragment))
HSP 1 Score: 643.654 bits (1659), Expect = 0.000e+0
Identity = 349/554 (63.00%), Postives = 417/554 (75.27%), Query Frame = 0
Query: 1 MAVVAKL---HLFSNLPSNPPPQPQPTPQSHRPPKPPIPIPKYPPPKPKKPPTPPNPAFKTHHNRSKYYKPVKQGVLASDDGRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMNRPWTGKAPMKKAKRNVRLFGSGE------EESDGVRRMEMRGGYEVKELFGGELRPRNEVLGRPLSKAEARELIKPYLSSNRQVNLGRDGLTHNMLELIHTHWRREPICKVRSLGVPTVDMNNVCRCLEEKTGGKIIFRVGGIAYLFRGRNYDPRNRPRYPVMLWKPATPVYPKLIQEAPEGLTKAEADVFREKGKKLLPICKLAKNGVYATLVRDVRSAFEECAIVKINCTGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGHDWKSMYKRSPKAP-SPVHDTTANDQESGSRK------VQLSPKMMSLWSRAIESNQAMVLDDLGLGPDALLEKVEEFERTSQATVHSFPALILPSEDVSGNRNEGPEEESSLDDGGYQSYDSEYDDDSDINDSFDGMDSSAPLGSLPIDLIAKQ 538
M ++AKL +LFS LPS PPP P + PPKPPIP+PKYPPP K PPNPAFKT H +KY+KPVK GV++SD R +++G+SG+SY LPGAPFEFQFSYSETPKVKP+AIREPAFLPFAPPTM RPWTGKAPMK +R R E EE V+R+EM E+ F E++PR +V+G+PL++AE EL+KP++ SNRQVNLGRDGLTHNMLEL+HTHW+R P+CKVR LGVPTVDM+NVCRCLEEKTGGKII RVGG Y+FRGRNYD R RP YPVMLWKPATPVYPKLIQEAPEGLTKAEAD R+KGK LLPIC+L KNGVY +LV+DVR+AFE +VKINC + SDYKKIGAKLK+LVPCVLLSFD+EQILMWRG WKSMY +P A S D + SGSR V SPKMMSLW RAIE+++AM+L+D+GLGPD+LL+KVEEF+ SQAT HS+PAL+ SED + + N+G S + E D++ ++D F+G +SS P+GSLP+D IA Q
Sbjct: 1 MPIIAKLPSSNLFSTLPSTPPPN-IPRRHTSSPPKPPIPVPKYPPPPLKSQKHPPNPAFKTLHRNTKYHKPVKPGVISSDGDRAVVVGESGLSYLLPGAPFEFQFSYSETPKVKPVAIREPAFLPFAPPTMPRPWTGKAPMKNERRKARKIALVESMNPVAEEEGRVKRLEMVRPLEMGR-FPAEVKPRQKVIGKPLTRAEIYELLKPHIGSNRQVNLGRDGLTHNMLELVHTHWKRRPVCKVRCLGVPTVDMDNVCRCLEEKTGGKIIHRVGGTVYIFRGRNYDHRTRPWYPVMLWKPATPVYPKLIQEAPEGLTKAEADELRKKGKNLLPICRLVKNGVYTSLVKDVRNAFEGSPLVKINCERLEPSDYKKIGAKLKDLVPCVLLSFDNEQILMWRGQGWKSMYPEAPSASISADSDAASGFNFSGSRSEPDPKTVISSPKMMSLWQRAIETSKAMLLEDIGLGPDSLLQKVEEFDSMSQATEHSYPALVFSSEDGNSSHNDG-------------SEEDEDDNEDFLSDPFEGTESSVPIGSLPVDWIATQ 539
BLAST of XM_017364421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1GXR4 ((CRS2-associated factor 2, chloroplastic {ECO:0000313|RefSeq:XP_022956896.1}))
HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0
Identity = 340/556 (61.15%), Postives = 405/556 (72.84%), Query Frame = 0
Match: A0A6J1GXR4 ((CRS2-associated factor 2, chloroplastic {ECO:0000313|RefSeq:XP_022956896.1}))
HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0
Identity = 340/556 (61.15%), Postives = 405/556 (72.84%), Query Frame = 0
Query: 1 MAVVAKLHLFSNLPSNPPPQPQPTPQSHRPPKPPIPIPKYPPPKPK----KPPTPPNPAFKTHHNRSKYYKPVKQGVLASDDGRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMNRPWTGKAPMKKAKRNVRLFGSGEEE---SDGVRRMEMRGGYEVKELFGGELRPRNEVLGRPLSKAEARELIKPYLSSNRQVNLGRDGLTHNMLELIHTHWRREPICKVRSLGVPTVDMNNVCRCLEEKTGGKIIFRVGGIAYLFRGRNYDPRNRPRYPVMLWKPATPVYPKLIQEAPEGLTKAEADVFREKGKKLLPICKLAKNGVYATLVRDVRSAFEECAIVKINCTGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGHDWKSMYKRSPKAPSPVHDTTANDQES---------GSRKVQLSPKMMSLWSRAIESNQAMVLDDLGLGPDALLEKVEEFERTSQATVHSFPALILPSEDVSGNRNEGPEEESSLDDGGYQSYDSEYDDDSDI-NDSFDGMDSSAPLGSLPIDLIAKQF 539
M + LHLFS+LPS PPP P S P PIPIPKY PPK + PP PPNPA KT H RSKYYKPVK GV++S R ++IGDSGVSY LP APFEFQ+SYSE PKVKP+AIREPAFLPFAPPTM RPWTGKAP+K +K+ + LF S + GV+++EM G + + + + E + R E+LG PL E R L+KP+LS NRQVNLGRDGLTHNMLELIH+HW+R+ +CKVR GVPTVDM+N+C LEEKTGGKII RVGG+ YLFRGRNY+ R RP+YPVMLWKPA PVYPKLIQEAPEGLT EA+ R KGK LLPICKLAKNGVY +LV DVR AFE +VK++CTGMH SDYKK+GAKLKELVPCVLLSFD+EQILMWRG DWKS P A P T ND ES ++ SPKM LW +AI+SN+A++L+++GL PD LLEKVEEFER SQAT HS+PALI+ SED S + ++ E + D+ Y S DDD D D FD ++ + P+GSLP+D+IAK+
Sbjct: 4 MPSLPGLHLFSSLPSAPPPH---DPSSASTPSTPIPIPKYLPPKSRILRTNPPKPPNPALKTFHRRSKYYKPVKDGVISSHGDRAVVIGDSGVSYLLPDAPFEFQYSYSEIPKVKPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPGTKGVKQVEMPGPFPLGK-YPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHLEEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTIEEANELRMKGKNLLPICKLAKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSDISEDPSATLPSQART-NDGESIENGDLLHGNHHTIKTSPKMKLLWEKAIDSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSPDDNLESQDR-DESNYSS-----DDDEDREGDLFDIVNPTVPMGSLPVDIIAKKL 548
BLAST of XM_017364421.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4CPN3 ((CRS2-associated factor 2, chloroplastic-like {ECO:0000313|RefSeq:XP_016503217.1}))
HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0
Identity = 337/566 (59.54%), Postives = 405/566 (71.55%), Query Frame = 0
Match: A0A1S4CPN3 ((CRS2-associated factor 2, chloroplastic-like {ECO:0000313|RefSeq:XP_016503217.1}))
HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0
Identity = 337/566 (59.54%), Postives = 405/566 (71.55%), Query Frame = 0
Query: 6 KLHLFSNLPSNPPPQPQPTPQSHRPPKPPIPIPKYPPP---KPKKPPTPPNPAFKTHHNRSKYYKPVKQG-VLASDDGRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPLAIREPAFLPFAPPTMNRPWTGKAPMKKAKRNVRLF---GSGEEESDGVRRMEMRGGYEVKELFGGELRPRNEVLGRPLSKAEARELIKPYLSSNRQVNLGRDGLTHNMLELIHTHWRREPICKVRSLGVPTVDMNNVCRCLEEKTGGKIIFRVGGIAYLFRGRNYDPRNRPRYPVMLWKPATPVYPKLIQEAPEGLTKAEADVFREKGKKLLPICKLAKNGVYATLVRDVRSAFEECAIVKINCTGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGHDWKSMYKRSPKAPSPVHDTTANDQESGSR-------------KVQLSPKMMSLWSRAIESNQAMVLDDLGLGPDALLEKVEEFERTSQATVHSFPALILPSEDVSGNRNEGPEEESSLDDG--------GYQSYDSEYDDDSDINDSFDGMDSSAPLGSLPIDLIAKQFSDSE 543
K +LFSNLP+ PP P PP PIP P +KPP PAFKTHH+ S Y+KPVK G V+ SD R++++ D+GVSY+LPGAPF+FQFSYSETPK KP+AIREP FLPFAPPTM RPWTGKAPMKK+KRN++LF E ++G++R EM YE+ F G RP+ VLG PL+K E REL+KP ++SNRQVN+GRDGL HNMLELIHTHWRR+P+CKVR LGVPTVDMNN+C+CLEEKTGGKII R+GG+ YLFRGRNYD R RP+YP+MLWKPATPVYPKLIQ+APEGLTK EAD R KGKKL PICKLAKNGVY TLVRDVRSAFE C +VKI+C GMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRG +WK MY +P S D ++ S R V SPKMMSLW A+ S +A++L+++ L PD LL KVEEF+ SQAT H++PAL+L + + PE+ + G + D +Y+D IN+SF+ ++S+ P G LP+D I K+FSD E
Sbjct: 10 KPNLFSNLPTVLPPTHNPNSTPLPPPPIPIPKYPPPLKKPHNSQKPPKKAAPAFKTHHHNSNYHKPVKPGQVITSDGDRSVVVKDNGVSYRLPGAPFDFQFSYSETPKAKPVAIREPGFLPFAPPTMPRPWTGKAPMKKSKRNIKLFEPLNPPVENNEGIKRYEMLRAYELMGKFEG--RPKENVLGAPLTKEEIRELLKPCIASNRQVNIGRDGLVHNMLELIHTHWRRDPVCKVRCLGVPTVDMNNLCKCLEEKTGGKIIHRMGGVVYLFRGRNYDHRTRPKYPLMLWKPATPVYPKLIQDAPEGLTKEEADELRIKGKKLPPICKLAKNGVYLTLVRDVRSAFEACPLVKIDCRGMHASDYKKIGAKLKELVPCVLLSFDDEQILMWRGKEWKPMYGNAPAVVSSRIDGVTDEMNSSERTGTATDRSKADAKTVSSSPKMMSLWKNAVGSGKALLLEEIDLKPDDLLNKVEEFDNISQATEHTYPALVLSKKHI-------PEQSGVMWKGSDDDDNDSDDEMSDEDYEDKYYINNSFEALESTVPKGFLPVDFIVKEFSDEE 566
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5AHH9 | E-Value: 0.000e+0, PID: 63.11 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8529... [more] |
| A0A7J7GWP0 | E-Value: 0.000e+0, PID: 66.15 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5945... [more] |
| A0A5B7BT68 | E-Value: 0.000e+0, PID: 63.78 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7168... [more] |
| A0A7J0FN44 | E-Value: 0.000e+0, PID: 62.17 | (RNA-binding CRS1 / YhbY (CRM) domain-containing p... [more] |
| D7TDH9 | E-Value: 0.000e+0, PID: 62.03 | (Uncharacterized protein {ECO:0000313|EMBL:CBI2855... [more] |
| A0A438E6A7 | E-Value: 0.000e+0, PID: 59.65 | (CRS2-associated factor 2, chloroplastic {ECO:0000... [more] |
| A0A2G9GWX1 | E-Value: 0.000e+0, PID: 63.67 | (Uncharacterized protein {ECO:0000313|EMBL:PIN0977... [more] |
| A0A6A4L4S9 | E-Value: 0.000e+0, PID: 63.00 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9454... [more] |
| A0A6J1GXR4 | E-Value: 0.000e+0, PID: 61.15 | (CRS2-associated factor 2, chloroplastic {ECO:0000... [more] |
| A0A1S4CPN3 | E-Value: 0.000e+0, PID: 59.54 | (CRS2-associated factor 2, chloroplastic-like {ECO... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |