Resource Type:
Polypeptide
Name:
XM_017363021.1
Identifier:
XM_017363021.1-protein
Sequence:
MKAEETNSITSGYGNPPWVFKGSALYQLNLVKAETARAFIPKEFRLVEAF
GYTLGGFFLANYSDSPVGTFDELVVIGGIVWNPPTSCAWAARVLVSSNEA
CLHGRKDVGLPSYVAKFSKQISATPKPKSKFNTFLNMIGVGGSTNCMDIQ
VSETKDTAAADFCNINLTTGDAVNELNSGKWTGPTMKMSLPSYSGRTEYN
PHLLKYSCQIDCRVKLTSPAKVLGPSAEQNDTTQHPDGEHSENKRNLSID
VLLSKPILALQFNCLKMVVESPLMVSHGLLNPSEK
Sequence Length:
285
Sequence Checksum:
9f2eff255776f6bad59ef8c998fb40ec
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017363021.1, derives from mRNA, XM_017363021.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017363021.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017363021.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A995 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52266.1}))
HSP 1 Score: 392.119 bits (1006), Expect = 1.160e-135
Identity = 199/293 (67.92%), Postives = 230/293 (78.50%), Query Frame = 0
Match: A0A5B7A995 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52266.1}))
HSP 1 Score: 392.119 bits (1006), Expect = 1.160e-135
Identity = 199/293 (67.92%), Postives = 230/293 (78.50%), Query Frame = 0
Query: 1 MKAEETNSITSGYGNPPWVFKGSALYQLNLVKAETARAFIPKEFRLVEAFGYTLGGFFLANYSDSPVGTFDELVVIGGIVWNPPTSCAWAARVLVSSNEACLHGRKDVGLPSYVAKFSKQISATPKP-KSKFNTFLNMIGVGGS----TNCMDIQVSETKDTAAADFCNINLTTGDAVNELNSGKWTGPTMKMSLPSYSGRTEYNPHLLKYSCQIDCRVKLTSPAKVLGPS------------AEQNDTTQHPDGEHSENKRNLSIDVLLSKPILALQFNCLKMVVESPLMVS 276
M+ +ET S +SGYG PPWVFKGSALYQL+LVKAETARAF+PKEFRLVEAFGYTLGGFFLA+Y DSPVG F+ELVVI GIVWNPPTSCAWAARVLV+S+EAC+HGRKDVGLPS VA+FSK+I+A P+ KSK N FLNMIGVG + N MDIQV+E K AA D C INL G AV ELNS K+ GP ++MSLPS+SG TEYNPHLLKYSCQI+CR++ PA+V GPS + D T E EN+RNLSI V+LSKPILAL+FNCLKM VE+P++VS
Sbjct: 4 MEVKETKS-SSGYGKPPWVFKGSALYQLHLVKAETARAFVPKEFRLVEAFGYTLGGFFLASYDDSPVGIFNELVVIAGIVWNPPTSCAWAARVLVNSDEACVHGRKDVGLPSQVARFSKRITAIPRESKSKINGFLNMIGVGTADSSPKNRMDIQVTEFKGPAATDICTINL--GTAVPELNSNKFLGPVIRMSLPSFSGCTEYNPHLLKYSCQIECRIRAVQPAEVSGPSLPPKIDTEKSSECQSFDITDTTTREVRENERNLSISVMLSKPILALEFNCLKMQVEAPIVVS 293
BLAST of XM_017363021.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AK16 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8529996.1}))
HSP 1 Score: 387.882 bits (995), Expect = 4.583e-134
Identity = 195/293 (66.55%), Postives = 227/293 (77.47%), Query Frame = 0
Match: A0A5J5AK16 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8529996.1}))
HSP 1 Score: 387.882 bits (995), Expect = 4.583e-134
Identity = 195/293 (66.55%), Postives = 227/293 (77.47%), Query Frame = 0
Query: 1 MKAEETNSITSGYGNPPWVFKGSALYQLNLVKAETARAFIPKEFRLVEAFGYTLGGFFLANYSDSPVGTFDELVVIGGIVWNPPTSCAWAARVLVSSNEACLHGRKDVGLPSYVAKFSKQISATPK-PKSKFNTFLNMIGVGGST----NCMDIQVSETKDTAAADFCNINLTTGDAVNELNSGKWTGPTMKMSLPSYSGRTEYNPHLLKYSCQIDCRVKLTSPAKVLGPSAEQNDTTQHPDG------------EHSENKRNLSIDVLLSKPILALQFNCLKMVVESPLMVS 276
M+ +ET + +SGYG PWVFKGSALYQL+LVKAETARAF+PKEFRLVEAFGYTLGGFFLA+Y DSPVG FDELVVI GIVWNPPTSCAWAARVLV+S+EAC+HGRKDVGLPS VA+FSK+I+A P+ KSK N FLNMIGVG + N MDIQV+E K AA D C IN+ AV ELN K++GP ++MSLPS+SGRTEYNPHLLKYSCQI+CR++ AKV GPS D T+ E EN+RNL I V+LSKPILAL+FNCLKM V++PL+VS
Sbjct: 4 MEVKETKA-SSGYGKAPWVFKGSALYQLHLVKAETARAFVPKEFRLVEAFGYTLGGFFLASYDDSPVGNFDELVVIAGIVWNPPTSCAWAARVLVNSDEACIHGRKDVGLPSQVARFSKRITAIPRQSKSKINGFLNMIGVGTAVSSHKNHMDIQVTEFKGPAATDICTINVDA--AVPELNFDKYSGPVIRMSLPSFSGRTEYNPHLLKYSCQIECRIRAVQAAKVSGPSLTAKDDTEKSSDCQSFDMMDSTTREIGENERNLIISVMLSKPILALEFNCLKMQVDAPLVVS 293
BLAST of XM_017363021.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TLV1 ((protein NEOXANTHIN-DEFICIENT 1 {ECO:0000313|RefSeq:XP_011086872.1, ECO:0000313|RefSeq:XP_011086873.1}))
HSP 1 Score: 375.941 bits (964), Expect = 1.512e-129
Identity = 187/286 (65.38%), Postives = 219/286 (76.57%), Query Frame = 0
Match: A0A6I9TLV1 ((protein NEOXANTHIN-DEFICIENT 1 {ECO:0000313|RefSeq:XP_011086872.1, ECO:0000313|RefSeq:XP_011086873.1}))
HSP 1 Score: 375.941 bits (964), Expect = 1.512e-129
Identity = 187/286 (65.38%), Postives = 219/286 (76.57%), Query Frame = 0
Query: 1 MKAEETNSITSGYGNPPWVFKGSALYQLNLVKAETARAFIPKEFRLVEAFGYTLGGFFLANYSDSPVGTFDELVVIGGIVWNPPTSCAWAARVLVSSNEACLHGRKDVGLPSYVAKFSKQISATPKPKS-KFNTFLNMIGVGGS----TNCMDIQVSETKDTAAADFCNINLTTGD-AVNELNSGKWTGPTMKMSLPSYSGRTEYNPHLLKYSCQIDCRVKLTSPAKVLGPSA-----EQNDTTQHPDGEHSENKRNLSIDVLLSKPILALQFNCLKMVVESPLMV 275
M+ E NS GYG PPWVFKGSALYQL+LVKAETARAFIPKEFRLVEAFGYTLGGFFLANY DSP G FDELVVI GIVWNPPTSCAWAARVLV+S++AC+HGRKDVGLPS VA F+K ++A P K +F FLN IG+ S NCMDI+V E + + D C+IN+T A ++ ++ KW GP +KMSLPS+SGRTEYNPHLLKYSCQI+CR++ PAKV GPS E T G+ SE+KRNL+I V+LSKPILAL+FNCLKM VE+P +V
Sbjct: 1 METAEKNSAL-GYGKPPWVFKGSALYQLHLVKAETARAFIPKEFRLVEAFGYTLGGFFLANYEDSPAGIFDELVVIAGIVWNPPTSCAWAARVLVNSDKACVHGRKDVGLPSQVANFTKSLTALPVTKRGRFGCFLNKIGMADSPDKEKNCMDIRVKEMNNHISLDLCSINITAAAMAASQNDTRKWMGPAIKMSLPSFSGRTEYNPHLLKYSCQIECRLRAVPPAKVSGPSTSSTNPETTSETGFATGDSSEDKRNLTISVMLSKPILALEFNCLKMKVEAPTIV 285
BLAST of XM_017363021.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061E5R0 ((Uncharacterized protein {ECO:0000313|EMBL:EOX99646.1}))
HSP 1 Score: 367.081 bits (941), Expect = 6.398e-126
Identity = 184/284 (64.79%), Postives = 217/284 (76.41%), Query Frame = 0
Match: A0A061E5R0 ((Uncharacterized protein {ECO:0000313|EMBL:EOX99646.1}))
HSP 1 Score: 367.081 bits (941), Expect = 6.398e-126
Identity = 184/284 (64.79%), Postives = 217/284 (76.41%), Query Frame = 0
Query: 5 ETNSITSGYGNPPWVFKGSALYQLNLVKAETARAFIPKEFRLVEAFGYTLGGFFLANYSDSPVGTFDELVVIGGIVWNPPTSCAWAARVLVSSNEACLHGRKDVGLPSYVAKFSKQISATPKP-KSKFNTFLNMIGVG----GSTNCMDIQVSETKDTAAADFCNINLTTGDAVNELNSGKWTGPTMKMSLPSYSGRTEYNPHLLKYSCQIDCRVKLTSPAKVLGPSAEQND------TTQHPDGEHSENKRNLSIDVLLSKPILALQFNCLKMVVESPLMVSH 277
ET S +SGYG PPW+FKGSALYQL+LVKAETAR F+PKEFRLVEAFGYTLGGFFLANY DSP G FDELVVI GIVWNPPTSCAWAARVLV+S EAC HGRKDVGLPS VA+FSK+I+ P+ K KF FLNMIG+G S +CM++QV+E A+AD C+I L T N KW GP++ MSLPS+SG+TEYNP+LLKYSC+I CRV+ PA+V GPS + D TT E +N RNLSI VLLSKPILAL+FNC +M VE+P+++S+
Sbjct: 5 ETKS-SSGYGKPPWIFKGSALYQLHLVKAETARRFMPKEFRLVEAFGYTLGGFFLANYDDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSEEACHHGRKDVGLPSQVARFSKRITPVPRQTKGKFGGFLNMIGMGTTIHHSKDCMEVQVAEVVGHASADICSIKLITDVPTPRFN--KWMGPSITMSLPSFSGQTEYNPNLLKYSCRIACRVRAVRPARVSGPSPLKRDRDSDLETTDFTSDEPVDNGRNLSISVLLSKPILALEFNCFEMQVEAPIILSN 285
BLAST of XM_017363021.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TYT8 ((Uncharacterized protein {ECO:0000313|EMBL:CBI35665.3}))
HSP 1 Score: 367.081 bits (941), Expect = 1.560e-125
Identity = 186/298 (62.42%), Postives = 223/298 (74.83%), Query Frame = 0
Match: D7TYT8 ((Uncharacterized protein {ECO:0000313|EMBL:CBI35665.3}))
HSP 1 Score: 367.081 bits (941), Expect = 1.560e-125
Identity = 186/298 (62.42%), Postives = 223/298 (74.83%), Query Frame = 0
Query: 1 MKAEETNSITSGYGNPPWVFKGSALYQLNLVKAETARAFIPKEFRLVEAFGYTLGGFFLANYSDSPVGTFDELVVIGGIVWNPPTSCAWAARVLVSSNEACLHGRKDVGLPSYVAKFSKQISATPK-PKSKFNTFLNMIGVGGSTN----CMDIQVSETKDTAAADFCNINLTTGDAVNELNSGKWTGPTMKMSLPSYSGRTEYNPHLLKYSCQIDCRVKLTSPAKVLGPS-AEQNDTTQHPDG---------------EHSENKRNLSIDVLLSKPILALQFNCLKMVVESPLMVSH 277
++AEE +S SGYG PPW+FKG ALYQL+LVKAETARAFIPKEFRLVEAFGYTLGGFFLA+Y DSP G FDELVVI GIVWNPPTSCAWAARVLV+S+EAC+HGRK VGLPS VA+FSK+I+A P+ +SK N FLNMIG+G + N CMD+QV+E + AAD C++NL T AV L KW GP +KMSLPS+SG T YNP+LLKYSCQI+CRV+ PA+V PS +N+ +G E EN NL + V+LSKP+LAL+FNCL M VE+P++VSH
Sbjct: 21 VEAEEKSS--SGYGKPPWIFKGRALYQLHLVKAETARAFIPKEFRLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDEACVHGRKAVGLPSQVARFSKRITAIPRQQRSKTNGFLNMIGIGNTFNSPKDCMDVQVTEIEGHTAADACSVNLNT--AVPLLKPEKWMGPAIKMSLPSFSGHTVYNPNLLKYSCQIECRVRAVKPARVSSPSPGPKNEKENEKEGSPRHQIFSSMDSTAVETIENGENLCVSVMLSKPVLALEFNCLNMQVEAPIVVSH 314
BLAST of XM_017363021.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3N7EPL5 ((Uncharacterized protein {ECO:0000313|EMBL:RQO88443.1}))
HSP 1 Score: 365.54 bits (937), Expect = 1.584e-125
Identity = 180/282 (63.83%), Postives = 216/282 (76.60%), Query Frame = 0
Match: A0A3N7EPL5 ((Uncharacterized protein {ECO:0000313|EMBL:RQO88443.1}))
HSP 1 Score: 365.54 bits (937), Expect = 1.584e-125
Identity = 180/282 (63.83%), Postives = 216/282 (76.60%), Query Frame = 0
Query: 1 MKAEETNSITSGYGNPPWVFKGSALYQLNLVKAETARAFIPKEFRLVEAFGYTLGGFFLANYSDSPVGTFDELVVIGGIVWNPPTSCAWAARVLVSSNEACLHGRKDVGLPSYVAKFSKQISATPKP-KSKFNTFLNMIGVGGST----NCMDIQVSETKDTAAADFCNINLTTGDAVNELNSGKWTGPTMKMSLPSYSGRTEYNPHLLKYSCQIDCRVKLTSPAKVLGPSAEQNDTTQHPDGEHSENKRNLSIDVLLSKPILALQFNCLKMVVESPLMVSH 277
M+ ET +SGYG PPW+FKGSALYQL+LVK+ETARAFIPKEFRLVEAFGYTLGGFFLA+Y DSP G FDELVVI G VWNPPTSCAWAARVLV+S +AC HGRK+VGLPS VAKFSK+I+A P+ KSKF+ FL+ IG+G ++ +CMD+ V+ET D + D CNINLT V + KW GP +KMSLPS+SGRTEYNP LLKYSC I+CRV+ AKV PS + EH ++NL+I V+LSKPILAL+F+CLKM VE+P++VS
Sbjct: 1 MEVAETK-CSSGYGKPPWIFKGSALYQLHLVKSETARAFIPKEFRLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGTVWNPPTSCAWAARVLVNSGDACDHGRKEVGLPSQVAKFSKKITAIPRQRKSKFSGFLDKIGLGTASSSTKSCMDVLVTETNDRSTTDICNINLTA--VVPGMKFDKWKGPAIKMSLPSFSGRTEYNPSLLKYSCNIECRVRAVRAAKVSRPSLTSKQDAEESLSEH--ERQNLTISVMLSKPILALEFSCLKMQVEAPVVVSQ 277
BLAST of XM_017363021.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2K2B847 ((Uncharacterized protein {ECO:0000313|EMBL:PNT45951.2}))
HSP 1 Score: 365.54 bits (937), Expect = 1.831e-125
Identity = 180/282 (63.83%), Postives = 216/282 (76.60%), Query Frame = 0
Match: A0A2K2B847 ((Uncharacterized protein {ECO:0000313|EMBL:PNT45951.2}))
HSP 1 Score: 365.54 bits (937), Expect = 1.831e-125
Identity = 180/282 (63.83%), Postives = 216/282 (76.60%), Query Frame = 0
Query: 1 MKAEETNSITSGYGNPPWVFKGSALYQLNLVKAETARAFIPKEFRLVEAFGYTLGGFFLANYSDSPVGTFDELVVIGGIVWNPPTSCAWAARVLVSSNEACLHGRKDVGLPSYVAKFSKQISATPKP-KSKFNTFLNMIGVGGST----NCMDIQVSETKDTAAADFCNINLTTGDAVNELNSGKWTGPTMKMSLPSYSGRTEYNPHLLKYSCQIDCRVKLTSPAKVLGPSAEQNDTTQHPDGEHSENKRNLSIDVLLSKPILALQFNCLKMVVESPLMVSH 277
M+ ET +SGYG PPW+FKGSALYQL+LVK+ETARAFIPKEFRLVEAFGYTLGGFFLA+Y DSP G FDELVVI G VWNPPTSCAWAARVLV+S +AC HGRK+VGLPS VAKFSK+I+A P+ KSKF+ FL+ IG+G ++ +CMD+ V+ET D + D CNINLT V + KW GP +KMSLPS+SGRTEYNP LLKYSC I+CRV+ AKV PS + EH ++NL+I V+LSKPILAL+F+CLKM VE+P++VS
Sbjct: 1 MEVAETK-CSSGYGKPPWIFKGSALYQLHLVKSETARAFIPKEFRLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGTVWNPPTSCAWAARVLVNSGDACDHGRKEVGLPSQVAKFSKKITAIPRQRKSKFSGFLDKIGLGTASSSTKSCMDVLVTETNDRSTTDICNINLTA--VVPGMKFDKWKGPAIKMSLPSFSGRTEYNPSLLKYSCNIECRVRAVRAAKVSRPSLTSKQDAEESLSEH--ERQNLTISVMLSKPILALEFSCLKMQVEAPVVVSQ 277
BLAST of XM_017363021.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZTM4 ((protein NEOXANTHIN-DEFICIENT 1 {ECO:0000313|RefSeq:XP_021277679.1}))
HSP 1 Score: 363.614 bits (932), Expect = 1.159e-124
Identity = 185/287 (64.46%), Postives = 216/287 (75.26%), Query Frame = 0
Match: A0A6J0ZTM4 ((protein NEOXANTHIN-DEFICIENT 1 {ECO:0000313|RefSeq:XP_021277679.1}))
HSP 1 Score: 363.614 bits (932), Expect = 1.159e-124
Identity = 185/287 (64.46%), Postives = 216/287 (75.26%), Query Frame = 0
Query: 1 MKAEETNSITSGYGNPPWVFKGSALYQLNLVKAETARAFIPKEFRLVEAFGYTLGGFFLANYSDSPVGTFDELVVIGGIVWNPPTSCAWAARVLVSSNEACLHGRKDVGLPSYVAKFSKQISATPKP-KSKFNTFLNMIGVG----GSTNCMDIQVSETKDTAAADFCNINLTTGDAVNELNSGKWTGPTMKMSLPSYSGRTEYNPHLLKYSCQIDCRVKLTSPAKVLGPSAEQN-----DTTQHPDGEHSENKRNLSIDVLLSKPILALQFNCLKMVVESPLMVSH 277
M ET S +S YG PPW+FKGSALYQL+LVKAETAR FIPKEFRLVEAFGYTLGGFFLANY DSP G FDELVV+ GIVWNPPTSCAWAARVLV+S EAC HGRKDVGLPS VA+FSK+I+ P+ K F FLN IG+G S +CMD+QV+E A+AD C+I L T N KW GP++ MSLPS+SG+TEYNP+LLKYSC+I CRV+ PAKV GPS ++ +TT E +N RNLSI VLLSKPILAL+FNCL M VE+P++VS+
Sbjct: 1 MGFGETKS-SSSYGKPPWIFKGSALYQLHLVKAETARTFIPKEFRLVEAFGYTLGGFFLANYDDSPAGVFDELVVVAGIVWNPPTSCAWAARVLVNSEEACHHGRKDVGLPSQVARFSKRITPVPRQRKGNFGGFLNRIGMGTTIHHSKDCMDVQVAEVVGQASADICSIKLITDVPTPRFN--KWMGPSITMSLPSFSGQTEYNPNLLKYSCRITCRVRAVRPAKVSGPSPLKDRDCDLETTDFTPDEPVDNGRNLSISVLLSKPILALEFNCLDMQVEAPIIVSN 284
BLAST of XM_017363021.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DDN9 ((Uncharacterized protein {ECO:0000313|EMBL:GFS33067.1}))
HSP 1 Score: 362.844 bits (930), Expect = 4.072e-124
Identity = 184/286 (64.34%), Postives = 218/286 (76.22%), Query Frame = 0
Match: A0A7J0DDN9 ((Uncharacterized protein {ECO:0000313|EMBL:GFS33067.1}))
HSP 1 Score: 362.844 bits (930), Expect = 4.072e-124
Identity = 184/286 (64.34%), Postives = 218/286 (76.22%), Query Frame = 0
Query: 11 SGYGNPPWVFKGSALYQLNLVKAETARAFIPKEFRLVEAFGYTLGGFFLANYSDSPVGTFDELVVIGGIVWNPPTSCAWAARVLVSSNEACLHGRKDVGLPSYVAKFSKQISATP-KPKSKFNTFLNMIGVG----GSTNCMDIQVSETKDTAAADFCNINLTTGD---AVNELNSGKWTGPTMKMSLPSYSGRTEYNPHLLKYSCQIDCRVKLTSPAKVLGPSAE-QNDTTQHPDG-----------EHSENKRNLSIDVLLSKPILALQFNCLKMVVESPLMVS 276
SGYG PPWV SA+YQL+LVKA+TARAFIPKEF+LVEAFGYTLGGFFLA+Y DSPVG FDELV+I GIVWNPPTSCAWAARVLV+S+EAC+HGRKDVGLPS VA+FSK+I+A P + +K N FL MIGVG N +DIQV+E K A D C IN+ T A+ +LNS K GP +KMSLPS+SGRTEYNPHLLKYSCQI+CR++ PAKV GP A+ +NDT + E EN+RNL I V+LSKPILAL+F+CLKM VE+P++VS
Sbjct: 10 SGYGKPPWVPVFSAMYQLHLVKAKTARAFIPKEFKLVEAFGYTLGGFFLASYDDSPVGIFDELVLIAGIVWNPPTSCAWAARVLVNSDEACVHGRKDVGLPSQVARFSKKITAIPGRSDNKINRFLRMIGVGTVFNNPKNGLDIQVTEIKGPAVTDICTINVGTASLAKAMPDLNSNKLMGPVIKMSLPSFSGRTEYNPHLLKYSCQIECRIRAVQPAKVSGPPADPKNDTEPPSESSSSSFVDSVARELGENERNLGISVMLSKPILALEFSCLKMQVEAPIIVS 295
BLAST of XM_017363021.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6AGZ9 ((protein NEOXANTHIN-DEFICIENT 1-like isoform X1 {ECO:0000313|RefSeq:XP_022764154.1}))
HSP 1 Score: 361.303 bits (926), Expect = 1.139e-123
Identity = 178/278 (64.03%), Postives = 215/278 (77.34%), Query Frame = 0
Match: A0A6P6AGZ9 ((protein NEOXANTHIN-DEFICIENT 1-like isoform X1 {ECO:0000313|RefSeq:XP_022764154.1}))
HSP 1 Score: 361.303 bits (926), Expect = 1.139e-123
Identity = 178/278 (64.03%), Postives = 215/278 (77.34%), Query Frame = 0
Query: 10 TSGYGNPPWVFKGSALYQLNLVKAETARAFIPKEFRLVEAFGYTLGGFFLANYSDSPVGTFDELVVIGGIVWNPPTSCAWAARVLVSSNEACLHGRKDVGLPSYVAKFSKQISATPKP-KSKFNTFLNMIGVGG----STNCMDIQVSETKDTAAADFCNINLTTGDAVNELNSGKWTGPTMKMSLPSYSGRTEYNPHLLKYSCQIDCRVKLTSPAKVLGPSAEQ-----NDTTQHPDGEHSENKRNLSIDVLLSKPILALQFNCLKMVVESPLMVSH 277
++GYG PPW+FKGSALYQL+LVKAETARAFIP EFRLVEAFGYTLGGFFLANY DSP G FDELVVI GIVWNPPTSCAWAARVLV+S +AC HGRKDVGLPS VA+FSK+I+ P+ K KF FLNMIGV S +CMD+QV+E ++D CNI L T + N KW GP++ +SLPS+SG+TEYNP+LLKYSC++ CRV+ PAKV GPS + ++TT E +N RNLSI V+LSKPILAL+FNCL+M VE+P+++S+
Sbjct: 9 STGYGRPPWIFKGSALYQLHLVKAETARAFIPNEFRLVEAFGYTLGGFFLANYDDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSEQACHHGRKDVGLPSQVARFSKRITPVPRQTKGKFGGFLNMIGVSTTICHSKDCMDVQVTEVVGPTSSDICNIKLITDVPTTKFN--KWMGPSITVSLPSFSGQTEYNPNLLKYSCRLACRVRAVRPAKVSGPSPLRGRNCDSETTDLTAEELVDNGRNLSISVMLSKPILALEFNCLEMQVEAPIILSN 284
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A995 | E-Value: 1.160e-135, PID: 67.92 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5226... [more] |
| A0A5J5AK16 | E-Value: 4.583e-134, PID: 66.55 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8529... [more] |
| A0A6I9TLV1 | E-Value: 1.512e-129, PID: 65.38 | (protein NEOXANTHIN-DEFICIENT 1 {ECO:0000313|RefSe... [more] |
| A0A061E5R0 | E-Value: 6.398e-126, PID: 64.79 | (Uncharacterized protein {ECO:0000313|EMBL:EOX9964... [more] |
| D7TYT8 | E-Value: 1.560e-125, PID: 62.42 | (Uncharacterized protein {ECO:0000313|EMBL:CBI3566... [more] |
| A0A3N7EPL5 | E-Value: 1.584e-125, PID: 63.83 | (Uncharacterized protein {ECO:0000313|EMBL:RQO8844... [more] |
| A0A2K2B847 | E-Value: 1.831e-125, PID: 63.83 | (Uncharacterized protein {ECO:0000313|EMBL:PNT4595... [more] |
| A0A6J0ZTM4 | E-Value: 1.159e-124, PID: 64.46 | (protein NEOXANTHIN-DEFICIENT 1 {ECO:0000313|RefSe... [more] |
| A0A7J0DDN9 | E-Value: 4.072e-124, PID: 64.34 | (Uncharacterized protein {ECO:0000313|EMBL:GFS3306... [more] |
| A0A6P6AGZ9 | E-Value: 1.139e-123, PID: 64.03 | (protein NEOXANTHIN-DEFICIENT 1-like isoform X1 {E... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |