MHPAAATYFVPSSFLSFRCQQSVISHQRSSRSPIITPVKQCPKFNKLKTL
SASLQDNTQIVDYNTRTSVFPAEACETIGGDACNVEMYPEVKLTPDLKST
QPRTVSEELVDREYLDYNTSKTVFPGEACDDLGGEFCEPEYQAGVY
| Relationships |
|---|
| The polypeptide, XM_017363025.1, derives from mRNA, XM_017363025.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A2R6REN2 ((Light-regulated protein {ECO:0000313|EMBL:PSS27008.1}))
HSP 1 Score: 150.599 bits (379), Expect = 4.156e-45
Identity = 79/142 (55.63%), Postives = 98/142 (69.01%), Query Frame = 0
Query: 5 AATYFVPSSFLSFRCQQSVISHQRSSRSPIITPVKQCPKFNKLKTLSASLQDNTQIVDYNTRTSVFPAEACETIGGDACNVEMYPEVKLTPDLKSTQPRTVSEELVDREYLDYNTSKTVFPGEACDDLGGEFCEPEYQAGVY 146
AA YF PS+ +++ S RS+R K + L ++A+ D T VDY++ TSVFPAEACET+GGDAC+VEMYPEVKL P+ K+ +T +E VDREYL+YN KTVFPGEACDDLGGEFCEP+YQ GVY
Sbjct: 3 AALYFNPSTLPRLVATKTIASPWRSARLQT--------KLSPLIKVAATTPD-TPTVDYSSTTSVFPAEACETVGGDACDVEMYPEVKLNPESKTNTSKTPTE-AVDREYLEYNNPKTVFPGEACDDLGGEFCEPDYQKGVY 134
Match: A0A7J7HLC3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5953365.1}))
HSP 1 Score: 148.673 bits (374), Expect = 2.145e-44
Identity = 79/143 (55.24%), Postives = 97/143 (67.83%), Query Frame = 0
Query: 5 AATYFVPSSFLSFRCQQSVISHQRSSRS-PIITPVKQCPKFNKLKTLSASLQDNTQIVDYNTRTSVFPAEACETIGGDACNVEMYPEVKLTPDLKSTQPRTVSEELVDREYLDYNTSKTVFPGEACDDLGGEFCEPEYQAGVY 146
A YF PSS + + S RS P + +QCP L L+A+ D T VDY++ SVFPAEACET+GG+AC+ EMYPEVKL P+ K+ + + + E VDREYL+YN KTVFPGEACDDLGGEFCEPEYQ+GVY
Sbjct: 3 ATLYFAPSSIPRLIPSSNTTASPLSWRSIPQLQTTQQCP----LIKLTATPND-TSTVDYSSMNSVFPAEACETVGGEACDAEMYPEVKLNPEAKNNKSK-AAPETVDREYLEYNNPKTVFPGEACDDLGGEFCEPEYQSGVY 139
Match: A0A4S4EC28 ((Uncharacterized protein {ECO:0000313|EMBL:THG13176.1}))
HSP 1 Score: 146.362 bits (368), Expect = 1.730e-43
Identity = 78/143 (54.55%), Postives = 95/143 (66.43%), Query Frame = 0
Query: 5 AATYFVPSSFLSFRCQQSVISHQRSSRS-PIITPVKQCPKFNKLKTLSASLQDNTQIVDYNTRTSVFPAEACETIGGDACNVEMYPEVKLTPDLKSTQPRTVSEELVDREYLDYNTSKTVFPGEACDDLGGEFCEPEYQAGVY 146
A YF PSS + + RS P + +QCP L L+A+ D T VDY++ SVFPAEACET+GG+AC+ EMYPE KL P+ K+ + R + E VDREYL+YN KTVFPGEACDDLGGEFCEPEYQ+GVY
Sbjct: 3 ATLYFAPSSIPRLIPSSNTTASPLPWRSIPQLQTTQQCP----LIKLTATPND-TSTVDYSSMNSVFPAEACETVGGEACDAEMYPEAKLNPEAKNNKSR-AAPETVDREYLEYNNPKTVFPGEACDDLGGEFCEPEYQSGVY 139
Match: A0A5C7GWZ5 ((Uncharacterized protein {ECO:0000313|EMBL:TXG49039.1}))
HSP 1 Score: 145.976 bits (367), Expect = 2.935e-43
Identity = 73/141 (51.77%), Postives = 93/141 (65.96%), Query Frame = 0
Query: 6 ATYFVPSSFLSFRCQQSVISHQRSSRSPIITPVKQCPKFNKLKTLSASLQDNTQIVDYNTRTSVFPAEACETIGGDACNVEMYPEVKLTPDLKSTQPRTVSEELVDREYLDYNTSKTVFPGEACDDLGGEFCEPEYQAGVY 146
A PSSFLS + R ++ CP + ++ +++ DY++ SVFPAEACET+GGDAC+ +MYPEVKL PD +S + +T S EL++REYLDY+ SKTVFPGEACDDLGGEFCEPEYQ GVY
Sbjct: 3 AALSFPSSFLSVSTPARTLVLPRRDMPRLLHTSPNCPSIK-----ATAVVNDSSTADYSSNVSVFPAEACETLGGDACDADMYPEVKLKPDTESEKVKT-SSELIEREYLDYDGSKTVFPGEACDDLGGEFCEPEYQTGVY 137
Match: A0A200QGM6 ((Light regulated Lir1 {ECO:0000313|EMBL:OVA09668.1}))
HSP 1 Score: 145.206 bits (365), Expect = 4.715e-43
Identity = 73/124 (58.87%), Postives = 94/124 (75.81%), Query Frame = 0
Query: 24 ISHQRSSRSP-IITPVKQCPKFNKLKTLSASLQDNTQIVDYNTRTSVFPAEACETIGGDACNVEMYPEVKLTPDLKSTQPRTVSEELVDREYLDYNTSKTVFPGEACDDLGGEFCEPEYQAGVY 146
++ ++S +P I TP Q ++ + S+ + VDY++ TSVFPAEAC+T+GG+ACN EMYPEVKL P+ KST P+TVS ++VDREYL+YN KTVFPGEACDDLGGEFC+PEYQ GVY
Sbjct: 14 LTPNKTSFTPSIFTPKLQTTLVSRCSPIK-SMAVESSTVDYSSNTSVFPAEACDTVGGEACNAEMYPEVKLEPENKSTTPKTVS-DVVDREYLEYNEPKTVFPGEACDDLGGEFCQPEYQKGVY 135
Match: A0A6P5YC62 ((light-regulated protein-like {ECO:0000313|RefSeq:XP_022737895.1, ECO:0000313|RefSeq:XP_022737904.1}))
HSP 1 Score: 144.05 bits (362), Expect = 1.708e-42
Identity = 67/107 (62.62%), Postives = 85/107 (79.44%), Query Frame = 0
Query: 40 QCPKFNKLKTLSASLQDNTQIVDYNTRTSVFPAEACETIGGDACNVEMYPEVKLTPDLKSTQPRTVSEELVDREYLDYNTSKTVFPGEACDDLGGEFCEPEYQAGVY 146
Q P+ + +K + +++ VDY++ SVFPAEACETIGG+AC+VEMYPEVKL P+ +ST+ +T SE+ DREYL+YN+ KTVF GEACDDLGGEFCEPEYQ GVY
Sbjct: 31 QVPRCSPIKATPVAHDNSSSTVDYSSNASVFPAEACETIGGEACDVEMYPEVKLKPEAQSTKAKTASEQ-TDREYLEYNSPKTVFLGEACDDLGGEFCEPEYQTGVY 136
HSP 2 Score: 36.5798 bits (83), Expect = 5.441e-1
Identity = 18/49 (36.73%), Postives = 29/49 (59.18%), Query Frame = 0
Query: 38 VKQCPKFNKLKTLSASLQDNTQIVDYNTRTSVFPAEACETIGGDACNVE 86
VK P+ K +AS Q + + ++YN+ +VF EAC+ +GG+ C E
Sbjct: 82 VKLKPEAQSTKAKTASEQTDREYLEYNSPKTVFLGEACDDLGGEFCEPE 130
Match: W9RBM4 ((Uncharacterized protein {ECO:0000313|EMBL:EXB81208.1}))
HSP 1 Score: 142.51 bits (358), Expect = 6.887e-42
Identity = 78/138 (56.52%), Postives = 91/138 (65.94%), Query Frame = 0
Query: 9 FVPSSFLSFRCQQSVISHQRSSRSPIITPVKQCPKFNKLKTLSASLQDNTQIVDYNTRTSVFPAEACETIGGDACNVEMYPEVKLTPDLKSTQPRTVSEELVDREYLDYNTSKTVFPGEACDDLGGEFCEPEYQAGVY 146
P+ F C S I +SSR+P +LK AS +++ VDY++ TSVFPAEACETIGGD C+ +MYPEVKLTP K+T T S E DREYL+YN KTVFPGEACDDLGGEFCEPEYQ GVY
Sbjct: 16 ITPAKSQGFPCCWSSIPKLQSSRTP------------QLKVTVAS--NDSPTVDYSSVTSVFPAEACETIGGDTCDAKMYPEVKLTPQPKNTA-STDSSEPADREYLEYNGPKTVFPGEACDDLGGEFCEPEYQTGVY 138
Match: A0A314XPU7 ((Light-regulated protein {ECO:0000313|EMBL:PQP94539.1}))
HSP 1 Score: 140.969 bits (354), Expect = 2.666e-41
Identity = 72/132 (54.55%), Postives = 94/132 (71.21%), Query Frame = 0
Query: 15 LSFRCQQSVISHQRSSRSPIITPVKQCPKFNKLKTLSASLQDNTQIVDYNTRTSVFPAEACETIGGDACNVEMYPEVKLTPDLKSTQPRTVSEELVDREYLDYNTSKTVFPGEACDDLGGEFCEPEYQAGVY 146
L+ C S+ +SSR P P+K +A++ D+ VDY++ TSVFPAEAC+TIGG+AC+VEMYPEVKL P+ + +T SE+L DR+YL+Y++ KTVFPGEACDDLGGEFCEPEYQ GV+
Sbjct: 27 LALPCSSSIPRLLKSSRCP---PLK-----------AANVTDDPSAVDYSSITSVFPAEACDTIGGEACDVEMYPEVKLKPEDRKNTAKTTSEQL-DRDYLEYDSPKTVFPGEACDDLGGEFCEPEYQRGVH 143
Match: A0A2P5C1B3 ((Light regulated Lir {ECO:0000313|EMBL:PON54806.1}))
HSP 1 Score: 139.813 bits (351), Expect = 7.442e-41
Identity = 65/103 (63.11%), Postives = 80/103 (77.67%), Query Frame = 0
Query: 44 FNKLKTLSASLQDNTQIVDYNTRTSVFPAEACETIGGDACNVEMYPEVKLTPDLKSTQPRTVSEELVDREYLDYNTSKTVFPGEACDDLGGEFCEPEYQAGVY 146
F +L+ + ++ VDY++ TSVFPAEACETIGG+AC+VEMYPEVKL+P+ +T T + E VDR+YL Y+ KTVFPGEACDDLGGEFCEPEYQ GVY
Sbjct: 41 FRRLQLKPTAAANDAATVDYSSITSVFPAEACETIGGEACDVEMYPEVKLSPEPSNTAAATTALEPVDRDYLQYDDPKTVFPGEACDDLGGEFCEPEYQTGVY 143
Match: B9GMS6 ((Uncharacterized protein {ECO:0000313|EMBL:PNT53070.1}))
HSP 1 Score: 139.043 bits (349), Expect = 1.095e-40
Identity = 75/139 (53.96%), Postives = 94/139 (67.63%), Query Frame = 0
Query: 5 AATYFVPSSFLSFRCQQSVISHQRSSRSPIITPVKQCPKFNKLKTLSASLQDNTQIVDYNTRTSVFPAEACETIGGDACNVEMYPEVKLTPDLKSTQPRTVSEELVDREYLDYNTSKTVFPGEACDDLGGEFCEPEYQA 143
AA + PS +S+ S +R + P Q K + +K SA + ++T VDY++ TSVFPAEACETIGG+ACNVEMYPEVKL PD +ST P T E +DREYL+YN++KTVF EACDDLGGEFC+P YQ
Sbjct: 3 AAIFLTPSILPLVTPNKSLASARR------VVPRLQTSKCSPIKA-SAPVTNDTSTVDYSSFTSVFPAEACETIGGEACNVEMYPEVKLKPDARSTTPST--SEQIDREYLEYNSAKTVFLDEACDDLGGEFCDPGYQG 132
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6REN2 | E-Value: 4.156e-45, PID: 55.63 | (Light-regulated protein {ECO:0000313|EMBL:PSS2700... [more] |
| A0A7J7HLC3 | E-Value: 2.145e-44, PID: 55.24 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5953... [more] |
| A0A4S4EC28 | E-Value: 1.730e-43, PID: 54.55 | (Uncharacterized protein {ECO:0000313|EMBL:THG1317... [more] |
| A0A5C7GWZ5 | E-Value: 2.935e-43, PID: 51.77 | (Uncharacterized protein {ECO:0000313|EMBL:TXG4903... [more] |
| A0A200QGM6 | E-Value: 4.715e-43, PID: 58.87 | (Light regulated Lir1 {ECO:0000313|EMBL:OVA09668.1... [more] |
| A0A6P5YC62 | E-Value: 1.708e-42, PID: 62.62 | (light-regulated protein-like {ECO:0000313|RefSeq:... [more] |
| W9RBM4 | E-Value: 6.887e-42, PID: 56.52 | (Uncharacterized protein {ECO:0000313|EMBL:EXB8120... [more] |
| A0A314XPU7 | E-Value: 2.666e-41, PID: 54.55 | (Light-regulated protein {ECO:0000313|EMBL:PQP9453... [more] |
| A0A2P5C1B3 | E-Value: 7.442e-41, PID: 63.11 | (Light regulated Lir {ECO:0000313|EMBL:PON54806.1}... [more] |
| B9GMS6 | E-Value: 1.095e-40, PID: 53.96 | (Uncharacterized protein {ECO:0000313|EMBL:PNT5307... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |