XM_017360494.1

Resource Type: 
Polypeptide
Name: 
XM_017360494.1
Identifier: 
XM_017360494.1-protein
Sequence: 
MGKLICDSPNSSPWKDPTSTPDLISAVDFISPAAWENVSGLEDQQKRTLE
RLQTKGVLWKHPKDQTHEAIVFRLSHGGDVEADGNCLFTASCKAMGMAGA
DARELRRRCVKRFVEDLGGFSKNERDLIDDAIRHMYCPDLKCGWGVHVVQ
ELKLVAKKDDRVQLDLAIDELVNLGMQRELAAESIYRERCIAVEDGSSWA
KYMSISGSPDDEYDIISLQYTEEGLLTVDENREGHAAAFGDDIAIECLAT
EFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEISGPPFFLFMKGTGWC
AAGADHYEPVVAHPSTLISQEKVAMVL
Sequence Length: 
327
Sequence Checksum: 
1f2e99de1d26db786553d7780f1a22bb
View location in JBrowse: 
DCARv2_Chr7:17735523..17738511-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017360494.1, derives from mRNA, XM_017360494.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017360494.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017360494.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A3D5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50191.1}))

HSP 1 Score: 520.005 bits (1338), Expect = 0.000e+0
Identity = 257/340 (75.59%), Postives = 286/340 (84.12%), Query Frame = 0
 
Query:    1 MGKLICDSPNSSP---WKDPTSTP--DLISAVDFIS---PAAWENVSGLEDQQKRTLERLQTKGVLWKHP-----KDQTHEAIVFRLSHGGDVEADGNCLFTASCKAMGMAGADARELRRRCVKRFVEDLGGFSKNERDLIDDAIRHMYCPDLKCGWGVHVVQELKLVAKKDDRVQLDLAIDELVNLGMQRELAAESIYRERCIAVEDGSSWAKYMSISGSPDDEYDIISLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEISGPPFFLFMKGTGWCAAGADHYEPVVAHPSTLISQEKVAMVL 327
            MGKLICDS  SSP   W+DPTS+P  DLI  VD +       WENV+GLEDQQKR L+RL  KGVLWKHP           ++VFRL+HGGDVEADGNCLFTAS KAMG +  +A +LRRR VKRF+EDLG  S  +RD+ID AI+HMY PDLK GWG+HVVQE+KL+AKK+DR  LD AI+ELV+LGMQRE AAESIY+ERCIAV+DG SWA YMSI GSPDDEYDII+LQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEI  PPFFLFMKGTGWC AGADHYEP++AHPS+L+SQEKVA+VL
Sbjct:    1 MGKLICDSTTSSPVIPWRDPTSSPSLDLIETVDPVDQTITTTWENVTGLEDQQKRHLQRLHAKGVLWKHPGDDDDDSSPPRSVVFRLTHGGDVEADGNCLFTASQKAMG-STINATDLRRRTVKRFLEDLGSVSGLKRDVIDAAIKHMYSPDLKSGWGIHVVQEVKLLAKKEDRDSLDSAINELVHLGMQREFAAESIYKERCIAVDDGPSWANYMSICGSPDDEYDIITLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEICEPPFFLFMKGTGWCGAGADHYEPLIAHPSSLLSQEKVAVVL 339
[Close]
BLAST of XM_017360494.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A0P5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50187.1}))

HSP 1 Score: 516.924 bits (1330), Expect = 0.000e+0
Identity = 256/340 (75.29%), Postives = 285/340 (83.82%), Query Frame = 0
 
Query:    1 MGKLICDSPNSSP---WKDPTSTP--DLISAVDFIS---PAAWENVSGLEDQQKRTLERLQTKGVLWKHP-----KDQTHEAIVFRLSHGGDVEADGNCLFTASCKAMGMAGADARELRRRCVKRFVEDLGGFSKNERDLIDDAIRHMYCPDLKCGWGVHVVQELKLVAKKDDRVQLDLAIDELVNLGMQRELAAESIYRERCIAVEDGSSWAKYMSISGSPDDEYDIISLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEISGPPFFLFMKGTGWCAAGADHYEPVVAHPSTLISQEKVAMVL 327
            MGKLICDS  SSP   W+DPTS+P  DLI  VD +       WENV+GLEDQQKR L+RL  KGVLWKHP           ++VFRL+HGGDVEADGNCLFTAS KAMG +  +A +LRRR VKRF+EDLG  S  +RD+ID AI+HMY PDLK GWG+HVVQE+KL+AKK+DR  LD AI+ELV+LGMQRE AAESIY+ERCIAV+DG SWA YMSI GSPDDEYDII+LQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRS+I  PPFFLFMKG GWC AGADHYEP+VAHPS+L+SQEKVA+VL
Sbjct:    1 MGKLICDSTTSSPVIPWRDPTSSPSLDLIETVDPVDQTITTTWENVTGLEDQQKRHLQRLHAKGVLWKHPGDDDDDSSPPRSVVFRLTHGGDVEADGNCLFTASQKAMG-STINATDLRRRTVKRFLEDLGSVSGLKRDVIDAAIKHMYSPDLKSGWGIHVVQEVKLLAKKEDRDSLDSAINELVHLGMQREFAAESIYKERCIAVDDGPSWANYMSICGSPDDEYDIITLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSQICEPPFFLFMKGRGWCGAGADHYEPLVAHPSSLVSQEKVAVVL 339
[Close]
BLAST of XM_017360494.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V557 ((uncharacterized protein LOC113717251 {ECO:0000313|RefSeq:XP_027097791.1}))

HSP 1 Score: 514.998 bits (1325), Expect = 0.000e+0
Identity = 249/335 (74.33%), Postives = 291/335 (86.87%), Query Frame = 0
 
Query:    1 MGKLICDSPNSSP---WKDPTSTP--DLI---SAVDFISPAAWENVSGLEDQQKRTLERLQTKGVLWKHPKDQTHEAIVFRLSHGGDVEADGNCLFTASCKAMGMAGADARELRRRCVKRFVEDLGGFSKNERDLIDDAIRHMYCPDLKCGWGVHVVQELKLVAKKDDRVQLDLAIDELVNLGMQRELAAESIYRERCIAVEDGSSWAKYMSISGSPDDEYDIISLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEISGPPFFLFMKGTGWCAAGADHYEPVVAHPSTLISQEKVAMVL 327
            MGKLICDS  SSP   W+DPTSTP  DL+   +A    +  +W++VSGLE+QQKR L RLQ KGVLWKHP+DQ + ++VFRLSHGG+V+ADGNCLFTAS KAMG     A+ELRRR V+RF+EDLG  S   R++I+ AI+HMY PDLK GWG+HVVQE+KL+AKK+DR+ LD AI+EL+ LGMQRELAAESIY+ERC+AV++GSSWAKYMSISGSPDDEY+II+LQYT+EGLLTVDENR+GHAAAFGDDIAIECLATEFKREI+VVQAHGSDAMVDE+NCVFFLPHRPRSEI  PPFFLFMKGTGWC AG DHYEP++AHPS+ +SQEKVAMVL
Sbjct:    1 MGKLICDSTASSPVIPWRDPTSTPTVDLVDQSTAGPPTTTTSWDDVSGLEEQQKRHLTRLQAKGVLWKHPEDQ-NTSVVFRLSHGGEVDADGNCLFTASRKAMGSV-LTAKELRRRTVRRFLEDLGSASNEVREMIESAIKHMYSPDLKSGWGIHVVQEIKLLAKKEDRLGLDSAINELLQLGMQRELAAESIYKERCVAVDNGSSWAKYMSISGSPDDEYEIITLQYTDEGLLTVDENRDGHAAAFGDDIAIECLATEFKREIFVVQAHGSDAMVDEDNCVFFLPHRPRSEICEPPFFLFMKGTGWCGAGGDHYEPLIAHPSSFVSQEKVAMVL 333
[Close]
BLAST of XM_017360494.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HIQ9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5952792.1}))

HSP 1 Score: 513.072 bits (1320), Expect = 0.000e+0
Identity = 259/340 (76.18%), Postives = 284/340 (83.53%), Query Frame = 0
 
Query:    1 MGKLICDSPNSS---PWKDPTSTP--DLISAVDF---ISPAAWENVSGLEDQQKRTLERLQTKGVLWKHPKDQTHEAIVFRLSHGGDVEADGNCLFTASCKAMGMAGA----DARELRRRCVKRFVEDLGGF-SKNERDLIDDAIRHMYCPDLKCGWGVHVVQELKLVAKKDDRVQLDLAIDELVNLGMQRELAAESIYRERCIAVEDGSSWAKYMSISGSPDDEYDIISLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEISGPPFFLFMKGTGWCAAGADHYEPVVAHPSTLISQEKVAMVL 327
            MGKLICDS  SS   PW+DPTS P  D I  VD    I+  AWENVSGLEDQQKR L  L  KGVLWKHP D +  A+VFRLSHGG+V+ADGNCLFTAS KAM  +      DA +LRRR VKRF+EDLG F S  ER+ IDDAIRHMY PDLK GWG+HVVQE+KL+AKK+DR  LD +I+EL+ LGMQRE AAESIY+ERCIAV+DG SWAKYMSISGSPDDE+DII+LQYT EGLLTVDENREGHAAAFGDD+AIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPH PRSEI  PPFFLFMKGTGWC AG DHYEP+VA+PSTLISQEKVA+VL
Sbjct:    1 MGKLICDSTTSSQIIPWRDPTSAPSIDSIETVDLTDQITTTAWENVSGLEDQQKRHLRGLYAKGVLWKHPGDPS-SAVVFRLSHGGEVKADGNCLFTASQKAMMKSSTAEIMDAGDLRRRTVKRFMEDLGSFVSGEERNAIDDAIRHMYSPDLKSGWGIHVVQEVKLLAKKEDREGLDSSINELLLLGMQREFAAESIYKERCIAVDDGPSWAKYMSISGSPDDEHDIITLQYTVEGLLTVDENREGHAAAFGDDLAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHHPRSEICQPPFFLFMKGTGWCGAGGDHYEPLVAYPSTLISQEKVAVVL 339
[Close]
BLAST of XM_017360494.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VCM6 ((uncharacterized protein LOC113719656 {ECO:0000313|RefSeq:XP_027100713.1}))

HSP 1 Score: 512.686 bits (1319), Expect = 0.000e+0
Identity = 249/335 (74.33%), Postives = 290/335 (86.57%), Query Frame = 0
 
Query:    1 MGKLICDSPNSSP---WKDPTSTP--DLI---SAVDFISPAAWENVSGLEDQQKRTLERLQTKGVLWKHPKDQTHEAIVFRLSHGGDVEADGNCLFTASCKAMGMAGADARELRRRCVKRFVEDLGGFSKNERDLIDDAIRHMYCPDLKCGWGVHVVQELKLVAKKDDRVQLDLAIDELVNLGMQRELAAESIYRERCIAVEDGSSWAKYMSISGSPDDEYDIISLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEISGPPFFLFMKGTGWCAAGADHYEPVVAHPSTLISQEKVAMVL 327
            MGKLICDS  SSP   W+DPTSTP  DL+   +A    +  +W++VSGLE+QQKR L RLQ KGVLWKHP+DQ + ++VFRLSHGG+VEADGNCLFTAS KAMG     A+ELRRR V+RF+EDLG  +   R+ I+ AI+HMY PDLK GWG+HVVQE+KL+AKK+DR+ LD AI+EL+ LGMQRELAA+SIY+ERCIAV++GSSWAKYMSISGSPDDEY+II+LQYT+EGLLTVDENR+GHAAAFGDDIAIECLATEFKREI+VVQAHGSDAMVDE+NCVFFLPHRPRSEI  PPFFLFMKGTGWC AG DHYEP++AHPS+ +SQEKVAMVL
Sbjct:    1 MGKLICDSTASSPVIPWRDPTSTPTVDLVDQSTAGPPTTTTSWDDVSGLEEQQKRHLTRLQAKGVLWKHPEDQ-NMSVVFRLSHGGEVEADGNCLFTASRKAMGSV-LTAKELRRRTVRRFLEDLGSATNEVREKIESAIKHMYSPDLKSGWGIHVVQEIKLLAKKEDRLGLDSAINELLQLGMQRELAADSIYKERCIAVDNGSSWAKYMSISGSPDDEYEIITLQYTDEGLLTVDENRDGHAAAFGDDIAIECLATEFKREIFVVQAHGSDAMVDEDNCVFFLPHRPRSEICEPPFFLFMKGTGWCGAGGDHYEPLIAHPSSFVSQEKVAMVL 333
[Close]
BLAST of XM_017360494.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AUF0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8533342.1}))

HSP 1 Score: 511.531 bits (1316), Expect = 0.000e+0
Identity = 250/339 (73.75%), Postives = 281/339 (82.89%), Query Frame = 0
 
Query:    1 MGKLICDSPNSSP---WKDPTSTPDL-----ISAVDFISPAAWENVSGLEDQQKRTLERLQTKGVLWKHPKDQTH----EAIVFRLSHGGDVEADGNCLFTASCKAMGMAGADARELRRRCVKRFVEDLGGFSKNERDLIDDAIRHMYCPDLKCGWGVHVVQELKLVAKKDDRVQLDLAIDELVNLGMQRELAAESIYRERCIAVEDGSSWAKYMSISGSPDDEYDIISLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEISGPPFFLFMKGTGWCAAGADHYEPVVAHPSTLISQEKVAMVL 327
            MGKLICDS  SSP   W+DPT+ P L     +   D I+  +WENV GLEDQQKR L+RL  KGVLWKHP D        ++VFRL+HGGDVEADGNCLFTAS KAMG A  +A +LRRR VKRF+EDLG  S  ERD+ID AI+HMY PDLK GWG+HVVQE+KL+AKK+DR  LD AI+ELVNLGMQRE AAESI++ERCIAV+DG SWAKYMSI GSPDDEYDII+LQYTEEGL TVDENREG AAAFGDDIAIECLATE++REIYVVQAHGSDAMVDEENCVFFLPHRPRS+I  PPFFLFMKG GWC AGADHYEP++A PS L+SQEKVA++L
Sbjct:    1 MGKLICDSMTSSPVIAWRDPTAAPSLDNIETVDPADQITTTSWENVKGLEDQQKRHLQRLHAKGVLWKHPGDDDSSSPPRSVVFRLTHGGDVEADGNCLFTASQKAMGSA-INASDLRRRTVKRFLEDLGSVSGLERDVIDAAIKHMYSPDLKSGWGIHVVQEVKLLAKKEDRDALDSAINELVNLGMQREFAAESIFKERCIAVDDGPSWAKYMSIYGSPDDEYDIITLQYTEEGLFTVDENREGRAAAFGDDIAIECLATEYRREIYVVQAHGSDAMVDEENCVFFLPHRPRSQICEPPFFLFMKGRGWCGAGADHYEPLIAQPSLLVSQEKVAVIL 338
[Close]
BLAST of XM_017360494.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A0L6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50189.1}))

HSP 1 Score: 507.679 bits (1306), Expect = 4.205e-180
Identity = 256/339 (75.52%), Postives = 280/339 (82.60%), Query Frame = 0
 
Query:    1 MGKLICDSPNSSP---WKDPTSTP--DLISAVDFISPAA---WENVSGLEDQQKRTLERLQTKGVLWKHP----KDQTHEAIVFRLSHGGDVEADGNCLFTASCKAMGMAGADARELRRRCVKRFVEDLGGFSKNERDLIDDAIRHMYCPDLKCGWGVHVVQELKLVAKKDDRVQLDLAIDELVNLGMQRELAAESIYRERCIAVEDGSSWAKYMSISGSPDDEYDIISLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEISGPPFFLFMKGTGWCAAGADHYEPVVAHPSTLISQEKVAMVL 327
            MGKLICDS  SSP   W+DPTS P  D I  VD  + A    WE+V+GLEDQQKR L RL  KGVLWKHP          ++VFRL+HGGDVEADGNCLFTAS KAMG A   A +LRRR VKRF ED+G  S  ER+ ID AI+HMY PDLK GWG+HVVQE+KL+A K DR  LD AI+ELV+LGMQRELAAESIY+ERCIAV+DG SWA YMSI GSPDDEYDII+LQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEI  PPFFLFMKGTGWC AGADHYEP++AHPS+L+SQEKVA+VL
Sbjct:    1 MGKLICDSTTSSPVITWRDPTSAPSLDCIETVDLANQATTTTWEHVTGLEDQQKRHLLRLHAKGVLWKHPGDDSSSSPPRSVVFRLTHGGDVEADGNCLFTASQKAMGSA-ISATDLRRRTVKRFSEDIGSVSGLEREAIDAAIKHMYSPDLKSGWGIHVVQEVKLLANKQDREALDSAINELVHLGMQRELAAESIYKERCIAVDDGPSWANYMSICGSPDDEYDIITLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEICEPPFFLFMKGTGWCGAGADHYEPLIAHPSSLLSQEKVAVVL 338
[Close]
BLAST of XM_017360494.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251RUM9 ((Uncharacterized protein {ECO:0000313|EMBL:OTF88062.1}))

HSP 1 Score: 507.294 bits (1305), Expect = 4.262e-180
Identity = 250/337 (74.18%), Postives = 285/337 (84.57%), Query Frame = 0
 
Query:    1 MGKLICDSPNSSP---WKDPTST----PDLISAVDF---ISPAAWENVSGLEDQQKRTLERLQTKGVLWKHPKDQTHEAIVFRLSHGGDVEADGNCLFTASCKAMGMAGADARELRRRCVKRFVEDLGGFSKNERDLIDDAIRHMYCPDLKCGWGVHVVQELKLVAKKDDRVQLDLAIDELVNLGMQRELAAESIYRERCIAVEDGSSWAKYMSISGSPDDEYDIISLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEISGPPFFLFMKGTGWCAAGADHYEPVVAHPSTLISQEKVAMVL 327
            MGKLICDS  SSP   WKDPT+T    P  I+AVD    I    W++VSGLEDQQKR L+RL TKGVLWK+ +    +A+VFRLSHGGDVEADGNCLFTAS KAM +   +A +LRRR V+RF+EDLG    ++R+ +D AIRHMY PDL+ GWG+HVVQE+KL+AKK DR  LD AIDELV+LGMQRELAAESIY+ERCIAVE+G +W KYM ISGSPDDEY+II+LQYTEEGLLTVDENREGHAAAFGDDIAIEC+ATEFKREIYV+QAHGSDAMVDE+NCVFFLPHRPRSEI GPPFFLFMKGTGWC AGADHYEP++AH S++IS EKVAMVL
Sbjct:    1 MGKLICDSTTSSPVIPWKDPTATAAPAPSPITAVDLSDQILTTTWDDVSGLEDQQKRHLQRLHTKGVLWKNQE----QAVVFRLSHGGDVEADGNCLFTASQKAMNLKEINATDLRRRAVRRFLEDLG----SDREDVDAAIRHMYAPDLRSGWGIHVVQEVKLLAKKVDRQSLDSAIDELVSLGMQRELAAESIYKERCIAVENGETWGKYMLISGSPDDEYNIITLQYTEEGLLTVDENREGHAAAFGDDIAIECIATEFKREIYVLQAHGSDAMVDEDNCVFFLPHRPRSEICGPPFFLFMKGTGWCGAGADHYEPLIAHSSSVISHEKVAMVL 329
[Close]
BLAST of XM_017360494.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A484KPF0 ((Uncharacterized protein {ECO:0000313|EMBL:VFQ65017.1}))

HSP 1 Score: 507.679 bits (1306), Expect = 4.437e-180
Identity = 247/343 (72.01%), Postives = 283/343 (82.51%), Query Frame = 0
 
Query:    1 MGKLICDSPNSSP---WKDPTSTPDLISAVDFISPAA------------WENVSGLEDQQKRTLERLQTKGVLWKHPKDQTHEAIVFRLSHGGDVEADGNCLFTASCKAMGM-AGADARELRRRCVKRFVEDLGGFSKNERDLIDDAIRHMYCPDLKCGWGVHVVQELKLVAKKDDRVQLDLAIDELVNLGMQRELAAESIYRERCIAVEDGSSWAKYMSISGSPDDEYDIISLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEISGPPFFLFMKGTGWCAAGADHYEPVVAHPSTLISQEKVAMVL 327
            MGKLICDS  SSP   W+DPTSTP  + ++D +   +            WENVSGLEDQQ+R L ++Q KGVLWKHPKDQ+  A VFRLSHGG+V++DGNCLFTAS KAMG+ A + AR+LRRR V RF+ED G  S  ER +I+ AI+HMY PDL  GWG+HVVQELKL+AKK+DR  LD AI+ELV LGMQRELAAESIY+ERCIAV+DG SWAKYM ISGSP+DEY+II+LQYTEEGLLT+DENR GHAAAFGDDIAIECLATEFKREI+VVQAHGSDAMVDE+NC+FFLPHRPRSEI  PP FLFMKGTGWC AGADHYEP++AHPS   SQEKVA+VL
Sbjct:    1 MGKLICDSTASSPVIPWRDPTSTPSNLDSIDLVDQMSANAAVAAAATTPWENVSGLEDQQRRNLIKIQAKGVLWKHPKDQSTSA-VFRLSHGGEVQSDGNCLFTASIKAMGLPAASTARDLRRRTVLRFMEDFGSASNEERGMIESAIKHMYSPDLNAGWGIHVVQELKLLAKKEDRESLDSAINELVQLGMQRELAAESIYKERCIAVDDGPSWAKYMLISGSPEDEYNIINLQYTEEGLLTIDENRYGHAAAFGDDIAIECLATEFKREIFVVQAHGSDAMVDEDNCIFFLPHRPRSEICEPPIFLFMKGTGWCGAGADHYEPLIAHPSPF-SQEKVALVL 341
[Close]
BLAST of XM_017360494.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A328D124 ((Uncharacterized protein {ECO:0000313|EMBL:RAL38660.1}))

HSP 1 Score: 507.679 bits (1306), Expect = 4.585e-180
Identity = 247/343 (72.01%), Postives = 284/343 (82.80%), Query Frame = 0
 
Query:    1 MGKLICDSPNSSP---WKDPTSTPDLISAVDFISPAA------------WENVSGLEDQQKRTLERLQTKGVLWKHPKDQTHEAIVFRLSHGGDVEADGNCLFTASCKAMGM-AGADARELRRRCVKRFVEDLGGFSKNERDLIDDAIRHMYCPDLKCGWGVHVVQELKLVAKKDDRVQLDLAIDELVNLGMQRELAAESIYRERCIAVEDGSSWAKYMSISGSPDDEYDIISLQYTEEGLLTVDENREGHAAAFGDDIAIECLATEFKREIYVVQAHGSDAMVDEENCVFFLPHRPRSEISGPPFFLFMKGTGWCAAGADHYEPVVAHPSTLISQEKVAMVL 327
            MGKLICDS  SSP   W+DPTSTP  + ++D +   +            WENVSGLEDQQ+R L ++Q KGVLWKHPKDQ+  A VFRLSHGG+V++DGNCLFTAS KAMG+ A + AR+LRRR V RF+ED G  S  ER +I+ AI+HMY PDL  GWG+HVVQELKL+AKK+DR  LD AI+ELV+LGMQRELAAESIY+ERCIAV+DG SWAKYM ISGSP+DEY+II+LQYTEEGLLT+DENR GHAAAFGDDIAIECLATEFKREI+VVQAHGSDAMVDE+NC+FFLPHRPRSEI  PP FLFMKGTGWC AGADHYEP++AHPS   SQEKVA+VL
Sbjct:    1 MGKLICDSTASSPVIPWRDPTSTPSSLDSIDLVDQMSANAAVAAAATTPWENVSGLEDQQRRNLIKIQAKGVLWKHPKDQSTSA-VFRLSHGGEVQSDGNCLFTASIKAMGLPAASTARDLRRRTVLRFMEDFGSASNEERGMIESAIKHMYSPDLNAGWGIHVVQELKLLAKKEDRESLDSAINELVHLGMQRELAAESIYKERCIAVDDGPSWAKYMLISGSPEDEYNIINLQYTEEGLLTIDENRYGHAAAFGDDIAIECLATEFKREIFVVQAHGSDAMVDEDNCIFFLPHRPRSEICEPPIFLFMKGTGWCGAGADHYEPLIAHPSPF-SQEKVALVL 341
Match NameStatsDescription
A0A5B7A3D5E-Value: 0.000e+0, PID: 75.59(Uncharacterized protein {ECO:0000313|EMBL:MPA5019... [more]
A0A5B7A0P5E-Value: 0.000e+0, PID: 75.29(Uncharacterized protein {ECO:0000313|EMBL:MPA5018... [more]
A0A6P6V557E-Value: 0.000e+0, PID: 74.33(uncharacterized protein LOC113717251 {ECO:0000313... [more]
A0A7J7HIQ9E-Value: 0.000e+0, PID: 76.18(Uncharacterized protein {ECO:0000313|EMBL:KAF5952... [more]
A0A6P6VCM6E-Value: 0.000e+0, PID: 74.33(uncharacterized protein LOC113719656 {ECO:0000313... [more]
A0A5J5AUF0E-Value: 0.000e+0, PID: 73.75(Uncharacterized protein {ECO:0000313|EMBL:KAA8533... [more]
A0A5B7A0L6E-Value: 4.205e-180, PID: 75.52(Uncharacterized protein {ECO:0000313|EMBL:MPA5018... [more]
A0A251RUM9E-Value: 4.262e-180, PID: 74.18(Uncharacterized protein {ECO:0000313|EMBL:OTF8806... [more]
A0A484KPF0E-Value: 4.437e-180, PID: 72.01(Uncharacterized protein {ECO:0000313|EMBL:VFQ6501... [more]
A0A328D124E-Value: 4.585e-180, PID: 72.01(Uncharacterized protein {ECO:0000313|EMBL:RAL3866... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.