XM_017364443.1 | CarrotOmics

Resource Type:

Polypeptide

Name:

XM_017364443.1

Identifier:

XM_017364443.1-protein

Sequence:

MPGTIHVSVLEFKGIASSSPPSSVFLKVSLGKTEYQTWDKGDFSFPLTTL
RDSLTVTIQDPEGNEISKIGVHSMAIVEKGIWDDLFPLQEGGHVHMKLQF
NLNEEERSRIRGMRELALKKKQLEELSKDTRYFNMASDASDSVASSPINN
EVSGKESALPYSDTISRNLQSNNGKEEALLQKHIAPNATDNSEESSSSKM
SLRTEVQHLPVRKNDTHPHLSQNNSLISGGTESVAKIKPVLLRMEDTPAG
KHEKQFPQRKPASSIMKMINAFETTLVQEKKTPIQVPSKSQSNRARKEGL
LKDQVVSNVKEPEPNSERPEYLTDLRLEQIGSEEVSSSGRLLSPPQISSE
KLRRPTILGKLQQLPPDSMNKGKHIGDIKSSVATRQLIVSSISNAIKVES
AEADAIMKIKSESNKDQDHSSTDERSSASKASSVLKQEEKGSVQLQPSDV
YAWQEGSEKFSFFKGLKEVKSEYLNEYLGSSNEKQKTVAPHEDEQHQHGS
STAWIFPNDARRMCVTSGVTAVIDSYDGCHTEGKHAVGPEEMKESETDTL
NLRNSKPECWADNAFTGSVKHGSGHLFSSPDKESPEEVTEKQRILSSAVY
LTQVFKHQLRNETPSPSSRILYIDLFQ

Sequence Length:

627

Sequence Checksum:

f7e6acb63ac78bbc95270fcab409c14c

View location in JBrowse:

DCARv2_Chr7:18139113..18143087-

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, XM_017364443.1, derives from mRNA, XM_017364443.1.

Blast Results:

The following BLAST results are available for this feature:

BLAST of XM_017364443.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of XM_017364443.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10

[Close]

BLAST of XM_017364443.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H1U5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5945668.1}))

HSP 1 Score: 254.218 bits (648), Expect = 5.149e-74
Identity = 202/550 (36.73%), Postives = 296/550 (53.82%), Query Frame = 0

Query:    1 MPGTIHVSVLEFKGIASSSPPSSVFLKVSLGKTEYQTWDKGDFSFPLTTLRDSLTVTIQDPEGNEISKIGVHSMAIVEKGIWDDLFPLQEGGHVHMKLQFNLNEEERSRIRGMRELALKKKQLEELSKDTRYFNMASDASDSVASS-PINNEVSGKESALPYSDTIS-RNLQS----NNGKEEALLQKHIAPNATDNSEESSS----SKM------SLRTEVQHLPVRKNDTHPHLSQNNSLISGGTESVAKIKPVLLRMEDTPAGKHEKQFPQRKPASSIMKMINAFETTLVQEKKTPIQVP-SKSQSNRARKEGLLKDQVVSNVKEPEPNSERPEYLTDLRLEQIGSEEVSSSGRLLSPPQISSEKLRRPTILGKLQQLPPDSMNKGKHIGDIKSSVATRQLIVSSISNAIKVESAEADAIMKIKSESNKDQDHSSTDERSSASKASSVL-KQEEKGSVQLQPSDVYAWQEGSEKFSFFKGLKEVKSEYLNEYLGSSNEKQKTVAPHEDEQHQHGSSTAWIFPNDARRMCVTSGVTAVIDSYDGCHTE 532
            MPGTIHVSV+  K + SSSP SS+ +KVS+GK EYQTWD+G FSFPLTTL D+L++T++D EGNEIS  GV SM++VEKG WD+  PL+ GGHVHMKLQF L+EEERSRIR MRE A+KKK  + L    +    AS A   V+SS  IN+EVS  + ++ +++  S  NL       N +E A+ QK I PN  D SEE+SS    SKM         T+++H+ V K    P   Q NS       S  K   V  ++++  A + EK  P  +  S++ +MI+AFE++L ++ +  I+ P +K QS++                     SE PE   DL L+++  +   +SGR           L+ P +  +LQQ+    + + +HIG  + S              ++++  E ++I   K E  K Q+      R SA +A+++L    E+ S   QP ++   Q+ S+  S         S  +N   G S +K K+    E+    + SS AW+FP+  RR+C+T+G   ++D   GC  E
Sbjct:    1 MPGTIHVSVMAHKDLQSSSPTSSILIKVSMGKREYQTWDEGVFSFPLTTLHDNLSITLEDTEGNEISHRGVQSMSVVEKGSWDEFLPLEGGGHVHMKLQFVLSEEERSRIRIMRESAMKKKSGDLL----KSLETASTAGGIVSSSLRINHEVSDSQRSVTHNEATSIGNLAPEYAIGNEEEIAIHQKQITPNDADGSEETSSAALMSKMINKFIEKTETKLRHVDVPKT---PVFLQENS-------SDTKKNLVASKLKNDQADQLEKPDPLERTPSNVREMISAFESSLAKDTRPGIKPPLTKPQSSKV-------------------GSESPE---DLNLKEMTKQSKLTSGR-----------LKNPFLTRELQQIQTYELKRKEHIGFDQDS-------------TVQIQFKETESIA--KHEPRKPQEDLV---RMSAVEAATILGTMREEHSEFHQPRNLLVNQKDSDGTSN-------NSNEIN-IQGPSEDKLKSTFC-ENLHSFYVSSGAWVFPDHTRRLCITTGSKQLMDLVGGCGIE 476

[Close]

BLAST of XM_017364443.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3JA01 ((Uncharacterized protein {ECO:0000313|EMBL:OMO91662.1}))

HSP 1 Score: 222.246 bits (565), Expect = 4.050e-61
Identity = 187/540 (34.63%), Postives = 285/540 (52.78%), Query Frame = 0

Query:    5 IHVSVLEFKGIASSSPPSSVFLKVSLGKTEYQTWDKGDFSFPLTTLRDSLTVTIQDPEGNEISKIGVHSMAIVEKGIWDDLFPLQEGGHVHMKLQFNLNEEERSRIRGMRELALKKKQLEELSKDTRYFNMASDASDSVASSPINNEVSGKESALPYSDTISRNLQSNNGKEEALLQKHIAPNATDNSEESSSSKMSLRT--EVQHLPVRKNDTHPHLSQNNSLISGGTE--SVAKIKPVLLRMEDTPAGKHEKQFPQRKPASSIMKMINAFETTLVQEKKTPIQVPSKSQSNRARKEGLLKDQVVSNVKEPEPNSER--PEYLTDLRLEQIGSEEVSSSGRLLSPPQISSEKLRRPTILGKLQQLPPDSMNKGKHIGDIKSSVAT-----RQLIVSSISNAIKVESAEADAIMKIKSESNKDQDHSSTDERSSASKASSVLKQEEKGSVQLQPSDVYAWQEGSEKFSFFK-GLKEVKSEYLNEYLGSSNEKQKTVAPHEDEQHQHGSSTAWIFPNDARRMCVTSGVTAVIDSYDGCHTE 532
            I VSVL+FKG  S+S PS + +KVS+GK EYQTWDKGDFSFPLTTLRD+LT+T++D EGN+IS  GV +  ++EKG+WDD+FP + GGHVHMKLQF L+EEER ++R MRE ALKKK  EEL    R             +SP N  VS KE +               G +E+LLQ  +  N      E+S   + L+   + +     K+ ++    + ++++  G E  S +K KP  +  E     K  KQ P  K  S++MKMI+AFE ++ Q+K  P   P  S     RK G+  D  ++N    E ++E+  P   T   L +I ++E           +ISS + +  TI G ++ +   + +  K +  +K S A      R+L+   + N   ++  E+D  MK + + ++D   +ST E+++ S+     K  +K S   Q  + ++ ++ S KF   K G +E   +   +  G SN K K+ A   ++   + SS  WIFP +   +C+T+G   ++D   G   E
Sbjct:  114 IQVSVLDFKGHDSASAPSQISVKVSMGKAEYQTWDKGDFSFPLTTLRDNLTITLEDAEGNKISHTGVETRLVMEKGVWDDIFPFEGGGHVHMKLQFVLSEEERQKVRIMRESALKKKH-EELCNSGR-------------ASPKNASVSYKEMS---------------GSQESLLQSGLVAN------EASLGSIPLKVFKDGKFDIDNKDGSYSIQKEKSTIVINGKEGNSSSKSKPDSVPSEPEKVNKSRKQGPVGKSNSNVMKMISAFEGSVNQDK--PSIKPPPSIKPETRKIGV--DSFIANPHSNEVDAEKIIPPNAT---LRRINTKEFEQ--------RISSNREKVQTI-GSVKSMYESASS--KEMEQLKESTAASVQAERKLL--DLKNRFIIKQKESD--MKEEKKYSEDFRRASTMEKAAFSR-----KMLDKHSKSNQSWNSFSKKQHSGKFFVTKDGGEETFHKDTPKADGISNGKLKSAATWSNDHCSNRSSGLWIFPGETNCLCITAGDKKIMDLMGGFWDE 591

[Close]

BLAST of XM_017364443.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2KYK5 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL02p062800:mrna}))

HSP 1 Score: 219.55 bits (558), Expect = 9.908e-61
Identity = 186/550 (33.82%), Postives = 282/550 (51.27%), Query Frame = 0

Query:   14 GIASSSPPSSVFLKVSLGKTEYQTWDKGDFSFPLTTLRDSLTVTIQDPEGNEISKIGVHSMAIVEKGIWDDLFPLQEGGHVHMKLQFNLNEEERSRIRGMRELALKKKQLEELSKDTRYFNMASDASDSVASS-PINNEVSGKESALPYSDTIS-RNLQS---NNGKEEALLQKHIAPNATDNSEESSSSKMSLRTEVQHLPVRKNDTHPHLSQNNSLISGGT--ESVAKIKPVLLRMEDTPAGKHEKQFPQRKPASSIMKMINAFETTLVQEKKTPIQV-PSKSQSNRARKEGLLKDQVVSNVKEPEPNSERPEYLTDLRLEQIGSEEVSSSGRLLSPPQISSEKLRRPTILGKLQQLPPDSMNKGKHIGDIKSS--------------VATRQLIV----SSISNAIKVESAEADAIMKIKSESNKDQDHSSTDERSSASKASSVLKQEEKGSVQLQPSDVYAWQEGSEKFSFF-KGLKEVKSEYLNEY--LGSSNEKQKTVAPHEDEQHQHGSSTAWIFPNDARRMCVTSGVTAVIDSYDGCHTEGK 534
            G+  +   SS+ +KVS+GK EYQ WDKGDFSFPLT+LRD+L VT+QD +G +IS  GV   +IVEKG+WDDLFPL+ GGHVHMKLQF L+EEERSRIR MRE ALKKKQ E L+   R    A+ A  SVASS    +E+S  + +L  ++ +S + + S   +  + E +     AP   D     S  ++  + E + LP     T    S   SL+ GG+  +  A    +   + +      +KQ    K   ++  MI+AFE+   Q+ ++PI+  P++SQSN++R E  LK Q ++  K                  QI   E S SGR+++             +  +LQ  P D   +G+ I    +S              + T++  +    SS+ N   V   E   + + + +S++D    ST E  +A+ +  +L +   G     P  ++  ++ S       +  +E++   L E+   G+S  K ++V   ED  +   SS AWIFP++ARR+CVT+G   V+D   GC T+ K
Sbjct:    2 GLPHALASSSICIKVSMGKIEYQIWDKGDFSFPLTSLRDNLIVTLQDADGIKISHAGVEIKSIVEKGLWDDLFPLEGGGHVHMKLQFVLSEEERSRIRMMRESALKKKQDELLNSSIRTSQGATTACSSVASSLGFRHELSDSQRSLLQTEGVSVKEVASKVNDADRYEEISSTISAPQGVD--VHLSHKELDEKNESKSLPA-DFPTEAISSNETSLLLGGSRLDVAASNNSIPHNLGEDRGHNIQKQGQIGKSPRNVKNMISAFESGQAQDMRSPIKSPPTRSQSNKSRIE--LKSQHLNEGK-----------------TQITKTEQSISGRVIN-----------LFLAEELQHTPTDIRKRGEQINLFGASDRSKLSQDTGQLEELNTQKFQILGTNSSLKNKFNVVHKE---VAREEEKSHQDLMRISTTE--TATVSWRILDEYSGG----HPLSLFTGKQDSCGNPVIEESRREIQFTNLQEFNIQGASTHKLESVHYCEDNHYLFKSSGAWIFPDEARRLCVTTGGKKVMDLMGGCSTKPK 509

[Close]

BLAST of XM_017364443.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9EPK2 ((Uncharacterized protein {ECO:0000313|EMBL:SPC76621.1}))

HSP 1 Score: 219.55 bits (558), Expect = 1.298e-60
Identity = 203/607 (33.44%), Postives = 311/607 (51.24%), Query Frame = 0

Query:   14 GIASSSPPSSVFLKVSLGKTEYQTWDKGDFSFPLTTLRDSLTVTIQDPEGNEISKIGVHSMAIVEKGIWDDLFPLQEGGHVHMKLQFNLNEEERSRIRGMRELALKKKQLEELSKDTRYFNMASDASDSVASS-PINNEVSGKESALPYSDTIS-----RNLQSN---------NGKEEALLQKHIAPNATD-NSEESSSSKMSLRTEVQHLPVRKNDTHPHLSQNNSLISGGTE-SVAKIKPVLLRMEDTPAGKH-EKQFPQRKPASSIMKMINAFETTLVQEKKTPIQVPS-KSQSNRARKEGLLKDQVVSNVKEPEPNSERPEYLTDLRLEQIGSEEVSSSGRLLSPPQISSEKLRR-PTILGKL-QQL----PPDSMNKGKHIGDIKSSVATRQLIV---SSISNAIKVESAEADAIMKIKSESNKDQDHSSTDERSSASKASSVLKQEEKGSVQLQPSDVYAWQ---------EGSEKFSFFKGLKEVKSEYLNEYLGSSNEKQKTVAPHEDEQHQHGSSTAWIFPNDARRMCVTSGVTAVIDSYDGCHTEGKHAVGP------EEMKESETDTLN--------LRNSKPECWADNAFTGSV 569
            G+ SS   SS+ +KVS+GK EYQTWDKGDFSFPLTTLRD+L V +QD +G E+S   V + +IVEKG+WDDLFPL+ GGHVHMKLQF L+EEER+RIR MRE ALK+K  E L+   R    A+ +  SV SS   ++EVS  + +L  ++ +S       + SN         + + E +      P   D +  E S  ++  + + + LP  +  T    S   SL+ GG+   VA    ++    +  +G++ +KQ    K  S++ KMI+AFE+ L Q+ ++PI+ P  K QS+ +R E  LK Q +S  K                  QI   E S SGR+++P    +E+L+  PT + K+ +Q+      D     +  G  K   A +  I    SS+ N   V   E   + + + +S++D    ST E  +A+ + ++L   +  S +  P +++  +         E S +    K L+E+  +      G+S  K + V  +E+  +   SS AWIFP++ARR+CVT+G   V+D  +GC  + K   G       E+M+E   D +         +  SKPE   D   +G +
Sbjct:    2 GLPSSLASSSICIKVSMGKIEYQTWDKGDFSFPLTTLRDNLIVALQDADGKEVSYAEVETKSIVEKGLWDDLFPLEGGGHVHMKLQFILSEEERNRIRMMRESALKRKHDELLNSSIRTSQGATASLSSVTSSLGFSHEVSDSQRSLLQTEGVSVKGVASKVVSNPVSFCKGEKSDRYEEVSSIIYVPQGVDVHLSEVSRKELVEKIDSKSLPA-EFPTEAICSIETSLLLGGSGLDVAASNNLMPHNLEEDSGRNPQKQSQLGKTPSNVRKMISAFESGLAQDMRSPIKSPPIKLQSSESRIE--LKIQHLSEGK-----------------SQITKTEQSISGRVINP--FLAEELKHGPTYITKIGEQINLLGASDWSKLSQDTGQYKELNAKKFQIKGTNSSLENKFNVVHKE---VAREEEKSHQDLTRISTSE--TATVSGTML---DDYSGRHPPCNLFTGKQDSCGNPGIEESRRGIQLKNLQEINVQ------GASTHKLEAVDYYEENHYLFESSGAWIFPDEARRLCVTTGGKRVMDLMEGCSIKPKVHQGKLNISMREDMEEHSVDAVTVIEKTCHKIGKSKPESSEDIGTSGGL 572

[Close]

BLAST of XM_017364443.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7HY05 ((Uncharacterized protein {ECO:0000313|EMBL:TXG61559.1}))

HSP 1 Score: 219.164 bits (557), Expect = 2.119e-60
Identity = 195/589 (33.11%), Postives = 288/589 (48.90%), Query Frame = 0

Query:    1 MPGTIHVSVLEFKGIASSSPPSSVFLKVSLGKTEYQTWDKGDFSFPLTTLRDSLTVTIQDPEGNEISKIGVHSMAIVEKGIWDDLFPLQEGGHVHMKLQFNLNEEERSRIRGMRELALKKKQLEELSKDTRY-FNMASDASDSVASSPINNEVSGKESALPYSDT-------ISRNLQSNNGK-------EEAL-LQKHIAP-----------------NATDNSEESSSSKMSLRTEVQHLPVRKNDTHPHLSQNNSLISGGTESVAKIKPVLLRMEDTPAGKHEKQFPQRKPASSIMKMINAFETTLVQEKKTPIQVPSKSQSNRARKEGLLKDQVVSNVKEPEPNSERPEYLTDLRLEQIGSEEVSSSGRLLSPPQISSEKLRRPTILGKLQQLPPDSMNKGKHIGDIKSSV-------ATRQLIVSSISNAIKVESAEADAIMKIKSE--SNKDQDHSSTD-ERSSASKASSVLKQEEKGSV-QLQPSDVYAWQEGSEKFSFFKGLKEVKSEYLNEYLGSSNEKQKTVAP----HEDEQHQHGSSTA---WIFPNDARRMCVTSGVTAVIDSYDGCHTEGKHAVG 538
            MPGTI VSVLEFKGI S+ P  S+  KVS+GK EYQTWDK DFSF LTTLRD+L +T+ D EGNEIS  G+ +  +VEKG+WDD+F L+ GGHVH+KLQF L+EEER+RIR MRE AL+KK+ E LS D R     A  +S S +S  +N EVS  + +L  S+        IS  + +N  +       EE   +QK   P                 + TD S   S  K+  +T     PVR   +    S + S     +     I P   ++++      EKQ P  K  S++  MI AFE++L Q+ +     P+K Q ++   E  LK  + + VK  E    +P +             +S S + L                G+ QQ    +  +   +G +++ V        TRQ  ++      K E   AD+  K+K +   +K + +SS D  R+SA KA++V  +     + + QP  ++    G+++ S  K   +   E +N  L    +KQK +       E+ + +H S      WIFP ++R +C+T+G    +D +  CH E    +G
Sbjct:    1 MPGTIIVSVLEFKGIQSTPPQISI--KVSMGKREYQTWDKEDFSFSLTTLRDNLMITLHDAEGNEISHTGIETRLVVEKGLWDDIFYLEGGGHVHLKLQFVLSEEERNRIRVMRESALRKKRGELLSSDFRSPAKAAIVSSKSESSLCLNYEVSDPQKSLLQSEAVVISAGLISTPVDANENERFGTKETEETFSIQKQTIPVDARRIHQPPVSQGFNVHLTDVSHRGSVEKIECQTPQDDFPVRAIHSEEAPSSSESSELVVSLKSKLISP---KLKEDGTYNPEKQNPVGKTPSNVRNMITAFESSLAQDTRPMKPPPAKFQLSKIGAEAPLKSTITNEVKTEEI---KPTH------------SISGSAKSLFSA-------------GESQQASTSTGKEEDQLGSVRTFVEATPSQETTRQFELTVADT--KTEGVTADSTNKLKQKEVDHKKEKNSSEDLMRASAGKAATVSGRTLPEHIGRQQPGRLF----GNKRHSGGKLSVKESGEGINPELLQEADKQKALIDKMKFKENWKDKHLSFECPGTWIFPVESRHLCITTGSKETMDLFGHCHAEAATHLG 550

[Close]

BLAST of XM_017364443.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3HAC1 ((Uncharacterized protein {ECO:0000313|EMBL:OMO67308.1}))

HSP 1 Score: 214.927 bits (546), Expect = 2.291e-59
Identity = 188/550 (34.18%), Postives = 275/550 (50.00%), Query Frame = 0

Query:    1 MPGTIHVS----VLEFKGIASSSPPSSVFLKVSLGKTEYQTWDKGDFSFPLTTLRDSLTVTIQDPEGNEISKIGVHSMAIVEKGIWDDLFPLQEGGHVHMKLQFNLNEEERSRIRGMRELALKKKQLEELSKDTRYFNMASDASDSVASSPINNEVSGKESALPYSDTISRNLQSNNGKEEALLQKHIAPNATDNSEESSSSKMSLRT-EVQHLPVRKNDTHPHLSQNNSLIS-GGTE--SVAKIKPVLLRMEDTPAGKHEKQFPQRKPASSIMKMINAFETTLVQEKKTPIQVPSKSQSNRARKEGLLKDQVVSNVKEPEPNSER--PEYLTDLRLEQIGSEEVSSSGRLLSPPQISSEKLRRPTILGKLQQL-PPDSMNKGKHIGDIKSSVATRQLIVSSISNAIKVESAEADAIMKIKSESNKDQDHSSTDERSSASKASSVLKQEEKG-------SVQLQPSDVYAWQEGSEKFSFFKGLKEVKSEYLNEYLGSSNEKQKTVAPHEDEQHQHGSSTAWIFPNDARRMCVTSGVTAVIDSYDGCHTE 532
            MPG I VS    VL+FKG  S+S PS + +KVS+GK EYQTWDKGDFSFPLTTLRD+LTVT++D EGN+IS  GV +  ++EKG+WDD+FP + GGHVHMKLQF L+EEER ++R MRE ALKKK  EEL              +S  +SP       K +++ Y D         +G +E+LLQ  +  N      E +   + L+  +     +   D    + +  S I   G E  S +K KP  +  E     K  KQ P  K  S++MKMI+AFE ++ Q+K  P   P  S     RK G+  D  ++N    E ++E+  P   T  R+     E+  SS R                  GK+Q +    SM       +++S  A R+L+   + N   ++  E+D  MK + + ++D   +ST E+++ S+   +L +  K        S +   S +   Q+G E+ +F K   +          G SN K K+ A   +    + SS  WIFP +   +C+T+G   ++D   G   E
Sbjct:    1 MPGIIQVSDFLSVLDFKGHDSASAPSQISVKVSMGKAEYQTWDKGDFSFPLTTLRDNLTVTLEDAEGNKISHTGVETRLVMEKGVWDDIFPFEGGGHVHMKLQFVLSEEERQKVRIMRESALKKKH-EEL-------------CNSGHASP-------KNASVGYKDM--------SGSQESLLQSGLVAN------EVTLGSIPLKVFKDGKFDIDNKDGSYSIQKEKSTIDINGKEGNSSSKSKPDSVPSEPEKVNKSRKQGPVGKANSNVMKMISAFEGSVNQDK--PSIKPPPSIKPETRKIGV--DSFIANPHSNEVDAEKIIPPNATLRRVNTKEFEQRISSNR------------------GKMQTIGSAKSMYASASSKEMESVQAERKLL--DLKNRFILKQKESD--MKEEKKYSEDFRRASTMEKAAFSR--KMLDKHSKSNQSWNSFSKKQHSSKILVTQDGGEE-TFHKDPPKAD--------GISNGKLKSAATWSNGHCSNRSSGLWIFPGETNCLCITAGGKKIMDLMGGFWDE 478

[Close]

BLAST of XM_017364443.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1B0B4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400034213}))

HSP 1 Score: 208.764 bits (530), Expect = 2.839e-56
Identity = 194/597 (32.50%), Postives = 286/597 (47.91%), Query Frame = 0

Query:    1 MPGTIHVSVLEFKGIASSSPPSSVFLKVSLGKTEYQTWDKGDFSFPLTTLRDSLTVTIQDPEGNEISKIGVHSMAIVEKGIWDDLFPLQEGGHVHMKLQFNLNEEERSRIRGMRELALKKKQLEELSKDTRYFNMASDASDSVASS-PINNEVSGK------------------ESALPYSDTISRNLQSNN---------------------GKEEALLQKHIAPNATDNSEESSSS---KMSLRTEVQHLPVRKN------DTHPHLSQNNSLISGGTESVAKIKPVLLRMEDTPAGKHEKQFPQRKPASSIMKMINAFETTLVQEK---KTPIQVPSKSQSNRARKEGLLKDQVVSNVKEPEPNS----ERPEYLTDLRLEQIGSEEVSSSGRLLSPPQ--ISSEKLRRPTILGKLQQLPPDSMNKGKHIGDIKSSVATRQ-LIVSSISNAIKVESAEADAIMKIKSESNKDQDHSSTDERSSASKASSVLKQEEKGSVQLQPSDVYAWQEGSEKFSFF------KGLKEVKSEYLNE--YLGSSNEKQKTVAPHEDEQHQHGSSTAWIFPNDARRMCVTSGVTAVIDSYDGCH 530
            MPGTI VSV +FK I+SSS    + L VS+GK  YQTWDKGDFSFPLTT RD+L V ++D EGNEIS+  V +++IVEKG WDD+F L+ G +VHMKLQF+L+E+ER+ IR +RE ALKKKQ +      +Y   A    D+ A S PI  E S +                  E   P ++ +   L  N+                     GK++++ Q+ I  + ++ SE+ S     KM +  + + +  ++N      DT   L      ++   ESV++   V L  E    G  EK        SS+ KMI+AFET L Q+K          SKSQ N     G LKD    N+  P   S    ERP    DL   QI    +   G+  SP Q  + +E+   P    +L+Q          HI     + +++Q   VS+   +  V ++  D +M++           S  E +++S+ +SV            P  + A    + + SF       K  +E++SE L E  +  +SN K K +A  EDE +   +S AWIFP++ +R+C+TS    ++   + C 
Sbjct:    1 MPGTIQVSVFDFKNISSSS----ICLWVSMGKRAYQTWDKGDFSFPLTTFRDNLVVRLEDVEGNEISRKEVETLSIVEKGCWDDVFQLEGGHYVHMKLQFSLSEDERNLIRNVRESALKKKQDKVPVTIVKYKGTAVPMRDTFALSLPITREFSDRSEVNSSSPVKEGVEKRYSEPDRPSAEKLQTQLIQNDSAAVKPVYDQDVQSILKMDVTGKKQSVSQQKILSDPSNKSEDQSGRSMLKMDVAVKKESISQKRNVDSEDQDTQSMLKMG---VAAKKESVSQKNIVDLSNEPDDQGVLEKT------PSSVRKMISAFETGLTQKKGGRSLTRTRASKSQPNLVGIGGSLKDLDSDNISRPNKMSALRLERPLNTVDLPEPQIN---IGKRGQNSSPEQDFVGTEQ---PVFHEELKQ-------SSVHIVRFNEAGSSQQETFVSAKKESNTVATSPVD-LMRL-----------SNLETATSSQTTSVA----------HPDVLKANNLAANRDSFNGPSVAEKQNREIRSETLPEVHFEKASNVKPKLIACREDELYDSENSGAWIFPDNKKRLCMTSAGKNIVHLSEDCR 549

[Close]

BLAST of XM_017364443.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SPY1 ((uncharacterized protein LOC113693599 isoform X4 {ECO:0000313|RefSeq:XP_027067947.1}))

HSP 1 Score: 207.994 bits (528), Expect = 3.877e-56
Identity = 184/561 (32.80%), Postives = 271/561 (48.31%), Query Frame = 0

Query:    1 MPGTIHVSVLEFKGIASSSPPSSVFLKVSLGKTEYQTWDKGDFSFPLTTLRDSLTVTIQDPEGNEISKIGVHSMAIVEKGIWDDLFPLQEGGHVHMKLQFNLNEEERSRIRGMRELALKKKQLEELSKDTRYFNMASDASDSVASSP-INNEVSGKESALPYSDTISRNLQSNNGKEEA-LLQKHIAPNATDNSEESSSSKMSLRTEVQHLPVRKN-DTHPHLSQ-NNSLISGGTESVAKIKPVL----------LRMEDTPAGKHEKQFPQRKPASSIMKMINAFETTL-VQEKKTPIQVPS-KSQSNRARKEGLLKDQVVSNVKEPEPNSERPEYLTDLRLEQIGSEEVSSSGRLLSPPQISSEKLRRPTILGKLQQLPPDSMNKGKHIGDIKSSVATRQLIVSSISNAIKVESAEADAIMKIK-----------SESNKDQDHSSTDERSSASKASSVLKQEEKGSVQLQPSDVYAWQEGSEKFSFFKGLKEVKSEYLNEYLGSSNEKQKTVAPHEDEQHQHGSSTAWIFPNDARRMCVTSGVTAVIDSYDGCHTEGK 534
            MPGT+ VSV+EFKG+ S+       LK+SLGK EY T D GDF FPLTTL D+L V + D EGNEI+  G+ +M+IVEK  WD+ FPL  GGHVH+KLQF LN+EER+RIR  RE A+KKKQ            +A+    SV   P    +VS   S  P +D     LQSN  +EE  LLQ  + P A D    + ++     TE   +   +  DT P + + + +L+ G  +S   I   L          +R+ED   GK  K+ P  K  S++ K+++AFE++L  Q+ K+ ++ P+ +S+     K G LKD    +V EP                       ++SGR              P + G ++     S  + +  G  KSSV+    I S +     +E++E + +  I+            ES    + SST E++S S        E   S +L      A ++ S   S+ +G     S    ++L +S +K K+V   E+E     +S  WIFPND + +C+T+    V++      TE K
Sbjct:    1 MPGTVQVSVMEFKGLPSTC------LKLSLGKREYLTSDTGDFLFPLTTLHDNLVVRLLDAEGNEIALTGIQTMSIVEKVSWDEKFPLDGGGHVHLKLQFVLNQEERNRIRLKREAAVKKKQESFSYISNENPEIATSFGGSVTLPPQAEQQVSVLASLSPNTDVSPAGLQSNYQREEVNLLQ--VNPKAMDKRAGTFTAPKIHGTEAHQIASEEEPDTQPSVPKVDVNLVFGKEQSSDSINTELDFLQKSSSASIRLEDDDVGKSPKRGPLEKTPSNVRKLVSAFESSLPKQDVKSSVKAPTVRSEPKNVGKGGHLKDCGPKDVTEPTE---------------------TTSGR-----------NNNPFVAGDMKPTLATSDEREEPFGSGKSSVSN---IWSKV-----IETSERELVAAIRPVEKEMSTIEWMESCAQLERSSTTEKASTSGRMHTDHSERAFSFRLS-----AEKQHSSATSYAEGKGRTDSTK-TDFLVASIKKSKSVKYCEEENFNSENSGMWIFPNDTKHLCITTAGKRVMNLLGTGATEAK 507

[Close]

BLAST of XM_017364443.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2C8F0 ((Uncharacterized protein {ECO:0000313|EMBL:TYG64186.1}))

HSP 1 Score: 206.838 bits (525), Expect = 4.742e-56
Identity = 198/576 (34.38%), Postives = 284/576 (49.31%), Query Frame = 0

Query:    1 MPGTIHVSVLEFKGI--ASSSPPSSVFLKVSLGKTEYQTWDKGDFSFPLTTLRDSLTVTIQDPEGNEISKIGVHSMAIVEKGIWDDLFPLQEGGHVHMKLQFNLNEEERSRIRGMRELALKKKQLEELSKDTRYFNMASDASDSVASS---PINN------EVSGKESALPY-----SDTISRNLQ----SNNGKEEALLQKHIAPN--ATDNSEESSSSKMSLRT-----EVQHLPVRKNDTHPHLSQNNSLISGGTESVAKIKPVLLRMEDTPAGKHEKQFPQRKPA------SSIMKMINAFETTLVQEKKTPIQVPSKSQSNRARKEGLLKDQVVSNVKEPEPNSERPEYLTDLRLEQIGSEEVSSSGRL----LSPPQISSEKLRRPTILGKLQQLPPDSMNKGKHIGDIKSSVATRQLIVSSISNAIKVESAEADAIMKIKSESNKDQDHSSTDERSSASKASSVLKQEEKGSVQLQPSDVYAWQEGSEKFSFFK-GLKEVKSEYLNEYLGSSNEKQKTVAPHEDEQHQHGSSTAWIFPNDARRMCVTSGVTAVIDSYDG-CHTEGKHAV 537
            MPGTI VSVL+FKG+  +SSS  S V +KVS GK EYQTWDKG+FSFPLTTLRD+L +TIQD EGNEIS  G+ +  +VEKG+WDD+F L+ GGHVHMKLQF LNEEER RIR MRE ALKKK  EEL          +  S S AS    P+NN      ++  ++ +        +D++   L+    S N  EE     H +PN  +   SE S S + S R+     E   + V  N+       N  + S    S+ K K       D+   + EK+   +KP       S++  MINAFE +L Q+ +  I+ P K   ++ RK G     V S++ E E    +P  +T   L  I  E+V + G +     + P   SE+L+                                        +  KV+  E+  ++K + + +KD   +S  E+   S+   +L +  KG+   Q  ++++ ++ S + S  K G +E   +   E  G+SN K+K+VA   +     GSS  WIFP DA+  C+T+G    +D   G C     H +
Sbjct:    1 MPGTIQVSVLDFKGLHSSSSSSSSKVSIKVSKGKIEYQTWDKGEFSFPLTTLRDNLIITIQDAEGNEISHTGLETRLVVEKGVWDDIFHLEGGGHVHMKLQFFLNEEERQRIRIMRESALKKKH-EELCNSGHGSPKNASVSFSEASQLSVPLNNPKDAKFDIDNRDRSYSIQKQKSTDSVPSELEKHNNSKNKHEELRDSGHGSPNKASVSYSEVSGSKESSFRSGLLANEANQVSVPLNNAK---DANFDITSRNRSSIQKQKST-----DSVPSELEKRNNSKKPRPAEKGHSNVKNMINAFEGSLYQDVRPSIKPPPKI--SQTRKIGANSFLVNSHLNEAETEKIKPPKVT---LGTINREKVQTFGSVEPIYGAAPSKESEQLK----------------------------------------DKFKVKQRES--VVKEEKKYSKDFKRASITEKGEFSQ--RILDKYSKGN---QSWNLFSAKQYSRRKSVTKEGREENFQKDPREAEGTSNGKRKSVAIWSNHHCSIGSSGLWIFPGDAKCSCITTGAKQTMDQMGGFCDEANTHQI 515

[Close]

BLAST of XM_017364443.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5R0J3 ((Uncharacterized protein {ECO:0000313|EMBL:KAB2024360.1}))

HSP 1 Score: 206.838 bits (525), Expect = 4.742e-56
Identity = 198/576 (34.38%), Postives = 284/576 (49.31%), Query Frame = 0

Query:    1 MPGTIHVSVLEFKGI--ASSSPPSSVFLKVSLGKTEYQTWDKGDFSFPLTTLRDSLTVTIQDPEGNEISKIGVHSMAIVEKGIWDDLFPLQEGGHVHMKLQFNLNEEERSRIRGMRELALKKKQLEELSKDTRYFNMASDASDSVASS---PINN------EVSGKESALPY-----SDTISRNLQ----SNNGKEEALLQKHIAPN--ATDNSEESSSSKMSLRT-----EVQHLPVRKNDTHPHLSQNNSLISGGTESVAKIKPVLLRMEDTPAGKHEKQFPQRKPA------SSIMKMINAFETTLVQEKKTPIQVPSKSQSNRARKEGLLKDQVVSNVKEPEPNSERPEYLTDLRLEQIGSEEVSSSGRL----LSPPQISSEKLRRPTILGKLQQLPPDSMNKGKHIGDIKSSVATRQLIVSSISNAIKVESAEADAIMKIKSESNKDQDHSSTDERSSASKASSVLKQEEKGSVQLQPSDVYAWQEGSEKFSFFK-GLKEVKSEYLNEYLGSSNEKQKTVAPHEDEQHQHGSSTAWIFPNDARRMCVTSGVTAVIDSYDG-CHTEGKHAV 537
            MPGTI VSVL+FKG+  +SSS  S V +KVS GK EYQTWDKG+FSFPLTTLRD+L +TIQD EGNEIS  G+ +  +VEKG+WDD+F L+ GGHVHMKLQF LNEEER RIR MRE ALKKK  EEL          +  S S AS    P+NN      ++  ++ +        +D++   L+    S N  EE     H +PN  +   SE S S + S R+     E   + V  N+       N  + S    S+ K K       D+   + EK+   +KP       S++  MINAFE +L Q+ +  I+ P K   ++ RK G     V S++ E E    +P  +T   L  I  E+V + G +     + P   SE+L+                                        +  KV+  E+  ++K + + +KD   +S  E+   S+   +L +  KG+   Q  ++++ ++ S + S  K G +E   +   E  G+SN K+K+VA   +     GSS  WIFP DA+  C+T+G    +D   G C     H +
Sbjct:    1 MPGTIQVSVLDFKGLHSSSSSSSSKVSIKVSKGKIEYQTWDKGEFSFPLTTLRDNLIITIQDAEGNEISHTGLETRLVVEKGVWDDIFHLEGGGHVHMKLQFFLNEEERQRIRIMRESALKKKH-EELCNSGHGSPKNASVSFSEASQLSVPLNNPKDAKFDIDNRDRSYSIQKQKSTDSVPSELEKHNNSKNKHEELRDSGHGSPNKASVSYSEVSGSKESSFRSGLLANEANQVSVPLNNAK---DANFDITSRNRSSIQKQKST-----DSVPSELEKRNNSKKPRPAEKGHSNVKNMINAFEGSLYQDVRPSIKPPPKI--SQTRKIGANSFLVNSHLNEAETEKIKPPKVT---LGTINREKVQTFGSVEPIYGAAPSKESEQLK----------------------------------------DKFKVKQRES--VVKEEKKYSKDFKRASITEKGEFSQ--RILDKYSKGN---QSWNLFSAKQYSRRKSVTKEGREENFQKDPREAEGTSNGKRKSVAIWSNHHCSIGSSGLWIFPGDAKCSCITTGAKQTMDQMGGFCDEANTHQI 515


Match Name	Stats	Description
A0A7J7H1U5	E-Value: 5.149e-74, PID: 36.73	(Uncharacterized protein {ECO:0000313\|EMBL:KAF5945... [more]
A0A1R3JA01	E-Value: 4.050e-61, PID: 34.63	(Uncharacterized protein {ECO:0000313\|EMBL:OMO9166... [more]
A0A7N2KYK5	E-Value: 9.908e-61, PID: 33.82	(Uncharacterized protein {ECO:0000313\|EnsemblPlant... [more]
A0A2N9EPK2	E-Value: 1.298e-60, PID: 33.44	(Uncharacterized protein {ECO:0000313\|EMBL:SPC7662... [more]
A0A5C7HY05	E-Value: 2.119e-60, PID: 33.11	(Uncharacterized protein {ECO:0000313\|EMBL:TXG6155... [more]
A0A1R3HAC1	E-Value: 2.291e-59, PID: 34.18	(Uncharacterized protein {ECO:0000313\|EMBL:OMO6730... [more]
M1B0B4	E-Value: 2.839e-56, PID: 32.50	(Uncharacterized protein {ECO:0000313\|EnsemblPlant... [more]
A0A6P6SPY1	E-Value: 3.877e-56, PID: 32.80	(uncharacterized protein LOC113693599 isoform X4 {... [more]
A0A5D2C8F0	E-Value: 4.742e-56, PID: 34.38	(Uncharacterized protein {ECO:0000313\|EMBL:TYG6418... [more]
A0A5J5R0J3	E-Value: 4.742e-56, PID: 34.38	(Uncharacterized protein {ECO:0000313\|EMBL:KAB2024... [more]

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.