XM_017361113.1

Resource Type: 
Polypeptide
Name: 
XM_017361113.1
Identifier: 
XM_017361113.1-protein
Sequence: 
MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWRNLPKRAGLKRCG
KSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRT
DNEIKNYWNTTLRKKTHVNQTASTSASPPPKSSRTKQCSTDKKRKKKDKK
NVESTHQNVASSQVTHHSLITPPKSDHHPTLMDTTSPEPLAAQNLMPKQD
SSSNGQSLDLVPDVDSSDMGFKELLDFDFSGLLDTNNDDQRDSEIETTSL
ISLNENPLMDVLVDEFWSAVEEPNLAACNPFNQYFASESDFLGDWLA
Sequence Length: 
297
Sequence Checksum: 
9df0c561b55931b1ab0ebc998c4ca946
View location in JBrowse: 
DCARv2_Chr7:18692086..18693681-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017361113.1, derives from mRNA, XM_017361113.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017361113.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017361113.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A4GZI5 ((Transcription factor DcMYB5 {ECO:0000313|EMBL:BAF49445.1}))

HSP 1 Score: 603.208 bits (1554), Expect = 0.000e+0
Identity = 291/297 (97.98%), Postives = 294/297 (98.99%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKTHVNQTASTSASPPPKSSRTKQCSTDKKRKKKDKKNVESTHQNVASSQVTHHSLITPPKSDHHPTLMDTTSPEPLAAQNLMPKQDSSSNGQSLDLVPDVDSSDMGFKELLDFDFSGLLDTNNDDQRDSEIETTSLISLNENPLMDVLVDEFWSAVEEPNLAACNPFNQYFASESDFLGDWLA 297
            MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWR+LPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKTHVNQT STSASP PKSSRTKQCST+KKRKKKDKKNVESTHQNVASSQVTHHSLITPPKSDHHP LMDTTSPEPLAAQNLMPKQDSSSNGQSLDLVPDVDSSDMGFKELLDFDFSGLLDTNNDDQRDS+IETTSLISLNENPLMDVLVDEFWSAVEEPNLAACNPFNQYFASESDFLGDWLA
Sbjct:    1 MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWRSLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKTHVNQTTSTSASPTPKSSRTKQCSTEKKRKKKDKKNVESTHQNVASSQVTHHSLITPPKSDHHPILMDTTSPEPLAAQNLMPKQDSSSNGQSLDLVPDVDSSDMGFKELLDFDFSGLLDTNNDDQRDSKIETTSLISLNENPLMDVLVDEFWSAVEEPNLAACNPFNQYFASESDFLGDWLA 297
[Close]
BLAST of XM_017361113.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A4GZI2 ((Transcription factor DcMYB3-1 {ECO:0000313|EMBL:BAF49442.1}))

HSP 1 Score: 318.546 bits (815), Expect = 9.913e-107
Identity = 180/299 (60.20%), Postives = 215/299 (71.91%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKTHVNQTASTSASPPPKSSRTKQCSTDKKRKKKDKKNV-ESTHQNVASSQVTHHSLITPPKSDHHPTLMDTTSPEPLAAQNLMPKQDSSSNGQSLDLVPDVDSSDMGFKELLDFDFSGLLDTNNDDQRDSEIETTSLISLNENPLMDVLVDEFWSAVEEPNLAACNPFNQYFASESDFL-GDWLA 297
            MGRSPCCSKVGLNKGAWT+ EDKIL DFIHLHGEG WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNIS DE+DLIIRLH+LLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKK H N T+S +A   P    TKQC+  K +K K K+   E     + ++     +     ++DH   +  T++ EPL  Q L  K    +  QS DLVP VDSSDM   + L++DFSGLL+T+ + Q D ++E+ S  S +E P+M +L +EFW+A EEP L + +  N YF S S+ L GDWLA
Sbjct:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTSSAAAPKTP----TKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQ-LITSTSTMEPLVQQALQNK----TTDQSSDLVPGVDSSDMCLTDFLNYDFSGLLNTDINHQ-DYDMESASPCSSSEKPIMQIL-EEFWNA-EEPCLVSNS--NLYFTSLSECLVGDWLA 285
[Close]
BLAST of XM_017361113.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A4GZI3 ((Transcription factor DcMYB3-2 {ECO:0000313|EMBL:BAF49443.1}))

HSP 1 Score: 318.161 bits (814), Expect = 1.208e-106
Identity = 179/299 (59.87%), Postives = 216/299 (72.24%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKTHVNQTASTSASPPPKSSRTKQCSTDKKRKKKDKKNV-ESTHQNVASSQVTHHSLITPPKSDHHPTLMDTTSPEPLAAQNLMPKQDSSSNGQSLDLVPDVDSSDMGFKELLDFDFSGLLDTNNDDQRDSEIETTSLISLNENPLMDVLVDEFWSAVEEPNLAACNPFNQYFASESDFL-GDWLA 297
            MGRSPCCSKVGLNKGAWT+ EDKIL DFIHLHGEG WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNIS DE+DLIIRLH+LLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKK H N T S +ASP    + TKQC+  K +K K K+   E     + ++     +     ++DH   +  T++ EPL    + P   + +  QS DLVP VDSSDM   + L++DFSGLL+T+ + Q D ++E+ S  S +E P+M +L +EFW+A EEP L + +  N YF S S+ L GDWLA
Sbjct:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTTSAAASP---KTPTKQCNNKKTKKHKKKREKSEPIKPEIKANASDVRAKAALDEADHQ-LITSTSTMEPL----VQPALQNKTTDQSSDLVPGVDSSDMCLTDFLNYDFSGLLNTDINHQ-DYDMESASPCSSSEKPIMQIL-EEFWNA-EEPCLVSNS--NLYFTSLSECLVGDWLA 286
[Close]
BLAST of XM_017361113.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4D6FVD1 ((MYB transcription factor 1 {ECO:0000313|EMBL:QCB65748.1}))

HSP 1 Score: 308.145 bits (788), Expect = 1.004e-102
Identity = 176/300 (58.67%), Postives = 208/300 (69.33%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKTHVNQTASTSASP--PPKSSRTKQCSTDKKRKKKDKKNVESTHQNVASSQVTHHSLITPPKSDHHPTLMDTTSPEPLAAQNLMPKQDSSSNGQSLDLVPDVDSSDMGFKELLDFDFSGLLDTNNDDQRDSEIETTSLISLNENPLMDVLVDEFWSAVEEPNLAACNPFNQYFASESDFL-GDWLA 297
            MGRSPCCSKVGLNKGAWT+ EDKIL DFIHLHGEG WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNIS DE+DLIIRLH+LLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKK H N T S +ASP  PPK S TK+    KK   K +    +   N ++ + T   +           ++DTT+ E L    L  K    +   S DLVP VDSS++   + L++DFSGLL ++N   +D E+++ S     E P+M++L +EFW+  EEP     N  + YFAS SD L GDWLA
Sbjct:    1 MGRSPCCSKVGLNKGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISDDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKAHDNHTTSAAASPKTPPKKSSTKKIKKYKKNCDKSESAQHNVQANASNVKATDDKI-------SQKLIVDTTT-EALVEDALKNK----TIDLSPDLVPCVDSSEICLTDFLNYDFSGLLSSDN--HKDYEMDSASPSCSYEKPMMEIL-EEFWNNAEEPCQLVSNS-DVYFASLSDCLVGDWLA 284
[Close]
BLAST of XM_017361113.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R454 ((Anthocyanin regulatory C1 protein {ECO:0000313|EMBL:PSS20780.1}))

HSP 1 Score: 241.891 bits (616), Expect = 3.410e-77
Identity = 133/252 (52.78%), Postives = 160/252 (63.49%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKTHVNQTASTSASPPPKSSRTKQCSTDKKRKKKDKKNVESTHQNVASSQVTHHSLITPPKSDHHPT-LMDTTSPEPLAAQNLMPKQDSSSNGQSLDLVPDVDSSDMGFKELLDFDFSGLLDTNNDDQRDSEIETTSLI 251
            MGRSPCCSK GLN+GAWT+ EDK+L D++ +HGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNIS DE++LIIRLH+LLGNRWSLIAGRLPGRTDNEIKNYWNT L KK H N T S +++     S   +  ++ K   + K N  +  +  A       + I+P  +   P   MDT    P     L P     S     D   D +  D    +LL+ DFSGL D N D    SE+    ++
Sbjct:    1 MGRSPCCSKEGLNRGAWTAAEDKMLTDYVKIHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISHDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVHDNHTTSKNSN----QSHHGKMKSNPKIDSQPKTNESNVVRTKAMRCSKVFNTISPQPNKAQPIKAMDTPVTNP---PELCPYNGVLSPTPEEDNPLDANLGDGWLSDLLNSDFSGLCDFNGDLSTSSELFFKDMV 245
[Close]
BLAST of XM_017361113.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: I6PZW3 ((Tannin-related R2R3 MYB transcription factor {ECO:0000313|EMBL:AFJ53047.1}) (Fragment))

HSP 1 Score: 241.121 bits (614), Expect = 4.456e-76
Identity = 141/285 (49.47%), Postives = 179/285 (62.81%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKTH-VNQTASTSASPPPKSSRTKQCSTDKKRKKKDKKNVESTHQNVASSQVTHHS----LITPPKSDHHPTLMDTTSPEPLAAQNLMPKQ-------DSSSNGQ-----------------SLDLVPDVD-SSDMGFKELLDFDFSGLLDTNNDDQRDSEIETTSLISLNE 255
            MGRSPCC+K GLN+GAWT+ EDKIL ++I LHGEG+WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDE++LIIRLH+LLGNRWSLIAGRLPGRTDNEIKNYWNT L KK   +NQ  + ++SP   S++ K      K+K+ + K +E  + NV  ++ T  S    + +PP S     L +    E    ++ MP         DS SN +                 S DL+ D + S D+   E L+FDFS   + + +D      + T + S +E
Sbjct:    1 MGRSPCCAKEGLNRGAWTTQEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQENTNNSSPTKLSAQLKNAKI--KQKQINPKPME-PNSNVVRTKATKCSKALFINSPPNSPPMHDLQNKAEAET-TTKSSMPSMLVDGVASDSMSNNEMEYGDGFVSFCDDDKELSADLLEDFNISDDICLSEFLNFDFSNACNFDYNDLLSPCSDQTQMFSGDE 281
[Close]
BLAST of XM_017361113.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061GMC6 ((GHMYB10, putative {ECO:0000313|EMBL:EOY30297.1}))

HSP 1 Score: 240.736 bits (613), Expect = 6.809e-76
Identity = 145/317 (45.74%), Postives = 192/317 (60.57%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKTHVNQTASTSASPPPKSSRTKQCSTDKKRKKKDKKNVESTHQNVASSQ--------VTHHSLITP--------PKSDHHPTLM-DTTSPEPLAAQNLMPKQDSSSNGQSLDLVPDVDSSDMGFKELLDFDFSGLLDTNNDDQRDSEIETTSLISLNENPLM---DVLVDEFWSAVEEPNLAACNPFNQYFASESDFLGDWLA 297
            MGR+PCCSK GLN+GAWT+ EDKIL ++I  HGEG WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNIS+DE++LIIRLH+LLGNRWSLIAGRLPGRTDNEIKNYWNT L KK   +Q  + SA+P    S  +     +KR+ +   +  +   +V  ++        +  H  I P        P  D     M  T++P P+ A  L   +D + + +  D + D +  +    ELL+ DFS L+  N  +   + I  +S     + PL+   ++L D   S   + N+A+ NP +   AS  D+  +WLA
Sbjct:    1 MGRNPCCSKEGLNRGAWTAHEDKILTEYIKAHGEGSWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISADEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVQHHQ--NPSAAPGHNKSNGR---VTRKREAQLATSAGTPSSHVVRTRAIRCSKVFINPHQKIEPFDRNREAKPSIDGECRPMTQTSAPSPIKA--LSENEDQNVHNKPFDFMVDFNMGEFCLSELLNSDFSDLVGLNYSNDSSNAISPSS-----DQPLIFSEEILQDWTSSHHAQQNVAS-NPHS--LASFLDYGEEWLA 302
[Close]
BLAST of XM_017361113.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: I6Q090 ((Tannin-related R2R3 MYB transcription factor {ECO:0000313|EMBL:AFJ53051.1}) (Fragment))

HSP 1 Score: 240.736 bits (613), Expect = 9.575e-76
Identity = 135/263 (51.33%), Postives = 168/263 (63.88%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKT------HVNQTASTSASPPPKSSRTKQCSTDKKRKKKDKKNVESTHQNVASSQVTHHSLITPPKSDHHPTLMDTTSPEPLAAQNLMPKQDSSSNGQ-----------------SLDLVPDVD-SSDMGFKELLDFDFSGLLDTNNDD 239
            MGRSPCC+K GLN+GAWT+ EDKIL ++I LHGEG+WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDE++LIIRLH+LLGNRWSLIAGRLPGRTDNEIKNYWNT L KK       + N+++ T  S  PK+++ KQ   + K  K +  NV  T     S  +  +SL   P  D        T+ +P    + +   DS SN +                 S DL+ D + + D+   ELL+ DFS   + + +D
Sbjct:    1 MGRSPCCAKEGLNRGAWTTQEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQQNTNKSSPTKLSAQPKNAKIKQKQINPKPMKPN-SNVVRTRATKCSKVLFINSLPNSPMHDLQNKAEAETTTKPSMLVDGVA-SDSMSNNEMEHGYGFLSFCDEEKELSADLLEDFNIADDICLSELLNSDFSNACNFDYND 261
[Close]
BLAST of XM_017361113.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: I6Q1A7 ((Tannin-related R2R3 MYB transcription factor {ECO:0000313|EMBL:AFJ53048.1}) (Fragment))

HSP 1 Score: 240.35 bits (612), Expect = 9.928e-76
Identity = 144/321 (44.86%), Postives = 192/321 (59.81%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKTH-VNQTASTSASPPPKSSRTKQCSTDKKRKKKDKKNVESTHQNVASSQVTHHSLI----TPPKSDHHPTLMDTTSPEPLAAQNLMPKQDSSSNGQ-----------------SLDLVPDVD-SSDMGFKELLDFDFSGLLDTNNDDQRDSEIETTSLISLNENPLMDVLVDEFWSA---VEEPNLA-ACNPFNQYFASESDFLGD 294
            MGRSPCC+K GLN+GAWT+ EDKIL ++I LHGEG+WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDE++LIIRLH+LLGNRWSLIAGRLPGRTDNEIKNYWNT L KK   +NQ  + ++SP   S++ K  +  +K++   K      + NV  ++ T  S +    +PP  +        T  +PL   N +   DS SN +                 S DL+ D + + D+   E L+ DFS   + + +D      + T + S +E       + + W+     +E N++   N F  +  S  + LG+
Sbjct:    1 MGRSPCCAKEGLNRGAWTAHEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQQNTNNSSPTKPSAQPKNANIKQKQQINPKP--MKPNSNVVRTKATKCSKVLFINSPPMHNLQNKAEAETKTKPLMLVNGVA-SDSMSNNEMERGNGFLSFCDEEKELSADLLDDFNIADDICLSEFLNSDFSNACNFDYNDLLSPCSDQTQMFSDDE-------ILKNWTQCNFADETNVSNNLNSFASFLESSEEVLGE 311
[Close]
BLAST of XM_017361113.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZLV4 ((myb-related protein 308-like isoform X1 {ECO:0000313|RefSeq:XP_021275848.1}))

HSP 1 Score: 239.965 bits (611), Expect = 1.049e-75
Identity = 131/266 (49.25%), Postives = 169/266 (63.53%), Query Frame = 0
 
Query:    1 MGRSPCCSKVGLNKGAWTSGEDKILADFIHLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEQDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKTHVNQTASTSASPPPKSSRTKQCSTDKK-RKKKDKKNVESTHQNVASSQVTHHS--LITPPKSDHHPTLMDTTSPEPLAAQNLMPKQDSSSNGQSLDLVPDVDSSDMGF---KELLDFDFSGLLDTNNDDQRDSEIETTSLISLNENPLMD 260
            MGRSPCCSK GLN+GAWT+ EDKIL  +I  HGEG+WRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNIS DE++LIIRLH LLGNRWSLIAGRLPGRTDNEIKNYWNTTL K+     ++ TS   PP  SR K+ +T+ +  K  +      T   V  ++ T  S  ++ P +    P + D    E    Q  +   +  +N  S+      +S D  +   ++ L+F+ +  L  +N+D  +++I        N+NP +D
Sbjct:    1 MGRSPCCSKEGLNRGAWTALEDKILTAYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISHDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTTLGKRAKAQASSPTSTETPPSKSRHKKLTTEPQVTKPSNSPQATETKIQVIRTKATRCSSKVLIPLQP---PPIQDIDPSEHQDFQPYLTNHEEINNNASVQSHHGTESLDALYSHGQDFLNFEINDQLRASNEDSEENDI--------NKNPSLD 255
Match NameStatsDescription
A4GZI5E-Value: 0.000e+0, PID: 97.98(Transcription factor DcMYB5 {ECO:0000313|EMBL:BAF... [more]
A4GZI2E-Value: 9.913e-107, PID: 60.20(Transcription factor DcMYB3-1 {ECO:0000313|EMBL:B... [more]
A4GZI3E-Value: 1.208e-106, PID: 59.87(Transcription factor DcMYB3-2 {ECO:0000313|EMBL:B... [more]
A0A4D6FVD1E-Value: 1.004e-102, PID: 58.67(MYB transcription factor 1 {ECO:0000313|EMBL:QCB6... [more]
A0A2R6R454E-Value: 3.410e-77, PID: 52.78(Anthocyanin regulatory C1 protein {ECO:0000313|EM... [more]
I6PZW3E-Value: 4.456e-76, PID: 49.47(Tannin-related R2R3 MYB transcription factor {ECO... [more]
A0A061GMC6E-Value: 6.809e-76, PID: 45.74(GHMYB10, putative {ECO:0000313|EMBL:EOY30297.1})[more]
I6Q090E-Value: 9.575e-76, PID: 51.33(Tannin-related R2R3 MYB transcription factor {ECO... [more]
I6Q1A7E-Value: 9.928e-76, PID: 44.86(Tannin-related R2R3 MYB transcription factor {ECO... [more]
A0A6J0ZLV4E-Value: 1.049e-75, PID: 49.25(myb-related protein 308-like isoform X1 {ECO:0000... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.