Resource Type:
Polypeptide
Name:
XM_017360641.1
Identifier:
XM_017360641.1-protein
Sequence:
MMKLFDSHCHLQDQRISNVVPKLITTALDNGIVYFAVNGTSEKDWPKVKE
MSDSYPCILPSFGIHPLWVTKRTPSWFSTLKNYFKANPCAAVGEIGLDKG
TRGKKVDFADQIEVFQQQLQLAKDLKRPVSVHCVRAFGDLLPVMKSLGPF
PAGVILHSYLGSAEMVPEFAKLGAYFSFSGYLMSLKESKAKKMLKSVPAD
RILLETDAPDGLPKSDNLESLFYIEKDSSHPEDHNAQVQNAAPVEGSSSD
STCCDAKNSSAVPNETLNHPANIKTVLAYVASLLDVNQEELADITYENAS
RLFSYEGSKLIL
Sequence Length:
312
Sequence Checksum:
a6ab924b9b9bce9db337e0a450366c7f
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017360641.1, derives from mRNA, XM_017360641.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017360641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017360641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GVK6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5944477.1}))
HSP 1 Score: 450.284 bits (1157), Expect = 4.157e-158
Identity = 214/312 (68.59%), Postives = 263/312 (84.29%), Query Frame = 0
Match: A0A7J7GVK6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5944477.1}))
HSP 1 Score: 450.284 bits (1157), Expect = 4.157e-158
Identity = 214/312 (68.59%), Postives = 263/312 (84.29%), Query Frame = 0
Query: 1 MMKLFDSHCHLQDQRISNVVPKLITTALDNGIVYFAVNGTSEKDWPKVKEMSDSYPCILPSFGIHPLWVTKRTPSWFSTLKNYFKANPCAAVGEIGLDKGTRGKKVDFADQIEVFQQQLQLAKDLKRPVSVHCVRAFGDLLPVMKSLGPFPAGVILHSYLGSAEMVPEFAKLGAYFSFSGYLMSLKESKAKKMLKSVPADRILLETDAPDGLPKSDNLESLFYIEKDSSHPEDHNAQVQNAAPVEGSSSDSTCCDAKNSSAVPNETLNHPANIKTVLAYVASLLDVNQEELADITYENASRLFSYEGSKLIL 312
M+KLFD+HCHLQD RI N VP+LI TA+D GIV FAVNG +EKDW VK+MS+SYP ++P FG+HP +VT+RTP+W STLK +F++ P AAVGEIGLDKG+RG+++DF DQIEVF+QQL+LAK+LKRP SVHCVRAFGDLL +MKS+GPFP GVILHS+LGSAEMVPEF+KLGAYFSFSG+LMS+KESKAKKMLKSVPA+RILLETDAPD LPKS+N +SLF IE D S P Q +++ S S++ DA+++SA P ETLNHPANI VL YVASLL++++EELAD++Y NA LFSY+GSK++L
Sbjct: 1 MVKLFDAHCHLQDPRIFNKVPQLIRTAVDTGIVCFAVNGITEKDWHLVKQMSESYPSVIPCFGLHPWFVTERTPNWLSTLKEFFESTPSAAVGEIGLDKGSRGREIDFTDQIEVFRQQLELAKELKRPASVHCVRAFGDLLQIMKSVGPFPDGVILHSFLGSAEMVPEFSKLGAYFSFSGFLMSMKESKAKKMLKSVPAERILLETDAPDALPKSNNFDSLFPIEGDDSLPAGFQIQGEDSTSNCCSPSENQSQDARDASAQPKETLNHPANIHYVLKYVASLLEMSEEELADLSYRNALHLFSYKGSKVLL 312
BLAST of XM_017360641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4CXN7 ((Uncharacterized protein {ECO:0000313|EMBL:THF94631.1}))
HSP 1 Score: 450.284 bits (1157), Expect = 5.175e-158
Identity = 216/320 (67.50%), Postives = 262/320 (81.88%), Query Frame = 0
Match: A0A4S4CXN7 ((Uncharacterized protein {ECO:0000313|EMBL:THF94631.1}))
HSP 1 Score: 450.284 bits (1157), Expect = 5.175e-158
Identity = 216/320 (67.50%), Postives = 262/320 (81.88%), Query Frame = 0
Query: 1 MMKLFDSHCHLQDQRISNVVPKLITTALDNGIVYFAVNGTSEKDWPKVKEMSDSYPCILPSFGIHPLWVTKRTPSWFSTLKNYFKANPCAAVGEIGLDKGTRGKKVDFADQIEVFQQQLQLAKDLKRPVSVHCVRAFGDLLPVMKSLGPFPAGVILHSYLGSAEMVPEFAKLGAYFSFSGYLMSLKESKAKKMLKSVPADRILLETDAPDGLPKSDNLESLFYIEKDSSHPEDHNAQVQNAAPVEGSSSDSTCC--------DAKNSSAVPNETLNHPANIKTVLAYVASLLDVNQEELADITYENASRLFSYEGSKLIL 312
M+KLFD+HCHLQD RI N VP+LI TA+D GIV FAVNG +EKDW VK+MS+SYP ++P FG+HP +VT+RTP+W STLK +F++ P AAVGEIGLDKG+RG+++DF DQIEVF+QQL+LAK+LKRP SVHCVRAFGDLL +MKS+GPFP GVILHS+LGSAEMVPEF+KLGAYFSFSG+LMS+KESKAKKMLKSVPA+RILLETDAPD LPKS+N +SLF IE D S P ++G S S CC DA+++SA P ETLNHPANI VL YVASLL++++EELAD++Y NA LFSY+GSK++L
Sbjct: 1 MVKLFDAHCHLQDPRIFNKVPQLIRTAVDTGIVCFAVNGITEKDWHLVKQMSESYPSVIPCFGLHPWFVTERTPNWLSTLKEFFESTPSAAVGEIGLDKGSRGREIDFTDQIEVFRQQLELAKELKRPASVHCVRAFGDLLQIMKSVGPFPDGVILHSFLGSAEMVPEFSKLGAYFSFSGFLMSMKESKAKKMLKSVPAERILLETDAPDALPKSNNFDSLFPIEGDDSLPAGFQ--------IQGEDSTSNCCSPSQNQSQDARDASAQPKETLNHPANIHYVLKYVASLLEMSEEELADLSYRNALHLFSYKGSKVLL 312
BLAST of XM_017360641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZBS6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8515329.1}))
HSP 1 Score: 452.981 bits (1164), Expect = 1.105e-157
Identity = 205/311 (65.92%), Postives = 263/311 (84.57%), Query Frame = 0
Match: A0A5J4ZBS6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8515329.1}))
HSP 1 Score: 452.981 bits (1164), Expect = 1.105e-157
Identity = 205/311 (65.92%), Postives = 263/311 (84.57%), Query Frame = 0
Query: 1 MMKLFDSHCHLQDQRISNVVPKLITTALDNGIVYFAVNGTSEKDWPKVKEMSDSYPCILPSFGIHPLWVTKRTPSWFSTLKNYFKANPCAAVGEIGLDKGTRGKKVDFADQIEVFQQQLQLAKDLKRPVSVHCVRAFGDLLPVMKSLGPFPAGVILHSYLGSAEMVPEFAKLGAYFSFSGYLMSLKESKAKKMLKSVPADRILLETDAPDGLPKSDNLESLFYIEKDSSHPEDHNAQVQNAAPVEGSSSDSTCCDAKNSSAVPNETLNHPANIKTVLAYVASLLDVNQEELADITYENASRLFSYEGSKLI 311
M+KLFD+HCHLQD RI + +LI TALD+G+V+FAVNG SEKDW V +MSD YPCI+P FG+HP +V +RTP+W +TLK F+A P AAVGEIGLDKG+RG+++DF DQ+E+F+QQL+LAK+L RP ++HCVRAFGDLL +MKS+GPFPAGVILHS+LGSAEMVP A+LGAYFSFSG+LMS+KESKAK+MLK+VPA+RILLETDAPD LPKS+NL+SLF +E D+S PED AQ +N+ +GS +++ +A+++S + E LNHPANI +L+YVASLL++ +EELADI+Y NA RLFSYEGSK++
Sbjct: 1 MVKLFDAHCHLQDPRIFKMTTQLIRTALDSGVVHFAVNGVSEKDWHLVMQMSDQYPCIIPCFGVHPWYVAERTPNWLNTLKECFEATPSAAVGEIGLDKGSRGRQIDFMDQVEIFRQQLELAKELNRPATIHCVRAFGDLLQIMKSVGPFPAGVILHSFLGSAEMVPGLAELGAYFSFSGFLMSMKESKAKRMLKAVPAERILLETDAPDALPKSNNLDSLFLVEGDASVPEDIQAQGENSTSNDGSPANNPAEEARDTSTLSKEILNHPANIHNILSYVASLLEMTKEELADISYGNAMRLFSYEGSKVL 311
BLAST of XM_017360641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AMB8 ((Putative deoxyribonuclease tatdn3 {ECO:0000313|EMBL:MPA57952.1}) (3.1.21.- {ECO:0000313|EMBL:MPA57952.1}))
HSP 1 Score: 448.743 bits (1153), Expect = 1.730e-157
Identity = 212/312 (67.95%), Postives = 263/312 (84.29%), Query Frame = 0
Match: A0A5B7AMB8 ((Putative deoxyribonuclease tatdn3 {ECO:0000313|EMBL:MPA57952.1}) (3.1.21.- {ECO:0000313|EMBL:MPA57952.1}))
HSP 1 Score: 448.743 bits (1153), Expect = 1.730e-157
Identity = 212/312 (67.95%), Postives = 263/312 (84.29%), Query Frame = 0
Query: 1 MMKLFDSHCHLQDQRISNVVPKLITTALDNGIVYFAVNGTSEKDWPKVKEMSDSYPCILPSFGIHPLWVTKRTPSWFSTLKNYFKANPCAAVGEIGLDKGTRGKKVDFADQIEVFQQQLQLAKDLKRPVSVHCVRAFGDLLPVMKSLGPFPAGVILHSYLGSAEMVPEFAKLGAYFSFSGYLMSLKESKAKKMLKSVPADRILLETDAPDGLPKSDNLESLFYIEKDSSHPEDHNAQVQNAAPV--EGSSSDSTCCDAKNSSAVPNETLNHPANIKTVLAYVASLLDVNQEELADITYENASRLFSYEGSKL 310
M+KLFDSHCHLQD RI + P+LI TALD+G+V+FAVNG SEKDW VK+MSD YPCI+P FG+HP +V++RTP+W +TLK +F+++P AAVGEIGLDKG+RG+++DF DQ+E+F+QQL+LAK+LKRP S+HCVRAFGDLL +MKS+GPFPAGVILHSYLGSAEMVPEFA LGAYFSFSG+LMS+KESKAK++LKSVPA+RILLETDAPD LPKS++ SLF IE+D+S PE A+ +N+ +GS S++ DA P ETLNHPANI VL YVASLL++ +EELADI+Y NA RLFSY+GSK+
Sbjct: 1 MVKLFDSHCHLQDPRIFKMAPQLIRTALDSGVVHFAVNGVSEKDWHLVKQMSDRYPCIIPCFGVHPWYVSERTPNWLNTLKEFFESSPSAAVGEIGLDKGSRGRQIDFMDQVEIFRQQLELAKELKRPASIHCVRAFGDLLQIMKSVGPFPAGVILHSYLGSAEMVPEFADLGAYFSFSGFLMSMKESKAKRILKSVPAERILLETDAPDALPKSNDSGSLFLIEEDASVPEGIQARGENSTTSTNDGSPSNNLSQDAGK----PKETLNHPANIHNVLIYVASLLEITKEELADISYGNALRLFSYQGSKV 308
BLAST of XM_017360641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6I5I8 ((Uncharacterized protein {ECO:0000313|EMBL:CCB62206.1}))
HSP 1 Score: 443.736 bits (1140), Expect = 1.486e-155
Identity = 208/311 (66.88%), Postives = 261/311 (83.92%), Query Frame = 0
Match: F6I5I8 ((Uncharacterized protein {ECO:0000313|EMBL:CCB62206.1}))
HSP 1 Score: 443.736 bits (1140), Expect = 1.486e-155
Identity = 208/311 (66.88%), Postives = 261/311 (83.92%), Query Frame = 0
Query: 2 MKLFDSHCHLQDQRISNVVPKLITTALDNGIVYFAVNGTSEKDWPKVKEMSDSYPCILPSFGIHPLWVTKRTPSWFSTLKNYFKANPCAAVGEIGLDKGTRGKKVDFADQIEVFQQQLQLAKDLKRPVSVHCVRAFGDLLPVMKSLGPFPAGVILHSYLGSAEMVPEFAKLGAYFSFSGYLMSLKESKAKKMLKSVPADRILLETDAPDGLPKSDNLESLFYIEKDSSHPEDHNAQVQNAAPVEGSSSDSTCCDAKNSSAVPNETLNHPANIKTVLAYVASLLDVNQEELADITYENASRLFSYEGSKLIL 312
MKLFDSHCHLQD RI N+ P+LI TAL++GI +FAVNG SE DW VK+MSD+Y C++P FG+HP +V +RTP WF+TLK++F A P A VGEIGLDKG+RG++++F +Q+EVFQQQL+LAK+LKRPVSVHCVRAFGDLL +M+ +GPFPAGVILHSYLGSAEMVPEFAKLGAYFSFSGYLMS+KE KAKKML+++P +RILLE+DAPD LPKSD L+SLF++E+DS ++ + N A G+ SD+ A+N S +P ETLNHPANI +VL YVASLL++++EELA+I+Y NA RLFS+EGSK+ L
Sbjct: 5 MKLFDSHCHLQDPRILNMAPQLIETALNSGIRHFAVNGVSENDWHLVKQMSDTYQCVVPCFGLHPWYVAERTPFWFNTLKDFFHATPAATVGEIGLDKGSRGREINFVNQVEVFQQQLELAKELKRPVSVHCVRAFGDLLQIMQHVGPFPAGVILHSYLGSAEMVPEFAKLGAYFSFSGYLMSMKEQKAKKMLRTIPVERILLESDAPDALPKSD-LDSLFWVERDSYASKELQTKDINPASSSGNLSDNPA--ARNKSVLPQETLNHPANIHSVLLYVASLLEMSKEELAEISYRNAVRLFSFEGSKISL 312
BLAST of XM_017360641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0G635 ((TatD related DNase {ECO:0000313|EMBL:GFZ06253.1}))
HSP 1 Score: 441.81 bits (1135), Expect = 4.986e-155
Identity = 213/312 (68.27%), Postives = 253/312 (81.09%), Query Frame = 0
Match: A0A7J0G635 ((TatD related DNase {ECO:0000313|EMBL:GFZ06253.1}))
HSP 1 Score: 441.81 bits (1135), Expect = 4.986e-155
Identity = 213/312 (68.27%), Postives = 253/312 (81.09%), Query Frame = 0
Query: 1 MMKLFDSHCHLQDQRISNVVPKLITTALDNGIVYFAVNGTSEKDWPKVKEMSDSYPCILPSFGIHPLWVTKRTPSWFSTLKNYFKANPCAAVGEIGLDKGTRGKKVDFADQIEVFQQQLQLAKDLKRPVSVHCVRAFGDLLPVMKSLGPFPAGVILHSYLGSAEMVPEFAKLGAYFSFSGYLMSLKESKAKKMLKSVPADRILLETDAPDGLPKSDNLESLFYIEKDSSHPEDHNAQVQNAAPVEGSSSDSTCCDAKNSSAVPNETLNHPANIKTVLAYVASLLDVNQEELADITYENASRLFSYEGSKLIL 312
MMKLFDSHCHLQD RI N VP+LI TALD G+V FAVNG SE+DW VK MSD YP ++P FG+HP +V +RTPSW TLK +F++ P AAVGEIGLDKG+RG+++DF DQIEVF+ QL+LAK+LKRP SVHCVRAFGDL+ ++KS+GPFPAG+ILHSY+GSAEMVPEFA+LGAYFSFSG+LMS+KESKAKKMLKSVP++RILLETDAPD LPKS NL+SLF IE + V G + S DA ++SA P ETLNHPANI VL YVASLL++N+EELAD+TY NA RLFSYEGSK++L
Sbjct: 1 MMKLFDSHCHLQDPRIFNKVPQLIRTALDTGLVRFAVNGISEEDWHLVKNMSDCYPSVIPCFGLHPWYVAERTPSWLGTLKEFFESTPAAAVGEIGLDKGSRGREIDFTDQIEVFRLQLELAKELKRPASVHCVRAFGDLIQILKSVGPFPAGIILHSYMGSAEMVPEFAELGAYFSFSGFLMSMKESKAKKMLKSVPSERILLETDAPDALPKSKNLDSLFSIE---------------GSRVRGGNFMS--IDASDTSAQPKETLNHPANIHNVLKYVASLLEMNEEELADLTYSNAVRLFSYEGSKVLL 295
BLAST of XM_017360641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QA32 ((TatD family protein {ECO:0000313|EMBL:PSS04757.1}))
HSP 1 Score: 441.81 bits (1135), Expect = 6.006e-155
Identity = 209/312 (66.99%), Postives = 252/312 (80.77%), Query Frame = 0
Match: A0A2R6QA32 ((TatD family protein {ECO:0000313|EMBL:PSS04757.1}))
HSP 1 Score: 441.81 bits (1135), Expect = 6.006e-155
Identity = 209/312 (66.99%), Postives = 252/312 (80.77%), Query Frame = 0
Query: 1 MMKLFDSHCHLQDQRISNVVPKLITTALDNGIVYFAVNGTSEKDWPKVKEMSDSYPCILPSFGIHPLWVTKRTPSWFSTLKNYFKANPCAAVGEIGLDKGTRGKKVDFADQIEVFQQQLQLAKDLKRPVSVHCVRAFGDLLPVMKSLGPFPAGVILHSYLGSAEMVPEFAKLGAYFSFSGYLMSLKESKAKKMLKSVPADRILLETDAPDGLPKSDNLESLFYIEKDSSHPEDHNAQVQNAAPVEGSSSDSTCCDAKNSSAVPNETLNHPANIKTVLAYVASLLDVNQEELADITYENASRLFSYEGSKLIL 312
MMKLFDSHCHLQD RI N VP+LI TALD G+V FAVNG SE+DW VK MSD YP ++P FG+HP +V +RTPSW TLK +F++ P AAVGEIGLDKG+RG+++DF DQIEVF+ QL+LAK+LKRP SVHCVRAFGDL+ ++KS+GPFPAG+ILHSY+GSAEMVPEFA+LGAYFSFSG+LMS+KESKAKKMLKSVP++RILLETDAPD LPKS+NL+SLF IE + E+ DA ++SA P ETLNHPANI VL YVASLL++++EELAD++Y NA RLFSYEGSK++L
Sbjct: 1 MMKLFDSHCHLQDPRIFNKVPQLIRTALDTGLVRFAVNGISEEDWHLVKNMSDCYPSVIPCFGLHPWYVAERTPSWLGTLKEFFESTPAAAVGEIGLDKGSRGREIDFTDQIEVFRLQLELAKELKRPASVHCVRAFGDLIQILKSVGPFPAGIILHSYMGSAEMVPEFAELGAYFSFSGFLMSMKESKAKKMLKSVPSERILLETDAPDALPKSNNLDSLFSIEGSRTQGENF-----------------MSTDASDTSAQPKETLNHPANIHNVLKYVASLLEMSEEELADLSYSNAVRLFSYEGSKVLL 295
BLAST of XM_017360641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U654 ((uncharacterized protein LOC105175482 {ECO:0000313|RefSeq:XP_011096231.1, ECO:0000313|RefSeq:XP_011096232.1}))
HSP 1 Score: 429.483 bits (1103), Expect = 8.706e-150
Identity = 194/311 (62.38%), Postives = 253/311 (81.35%), Query Frame = 0
Match: A0A6I9U654 ((uncharacterized protein LOC105175482 {ECO:0000313|RefSeq:XP_011096231.1, ECO:0000313|RefSeq:XP_011096232.1}))
HSP 1 Score: 429.483 bits (1103), Expect = 8.706e-150
Identity = 194/311 (62.38%), Postives = 253/311 (81.35%), Query Frame = 0
Query: 1 MMKLFDSHCHLQDQRISNVVPKLITTALDNGIVYFAVNGTSEKDWPKVKEMSDSYPCILPSFGIHPLWVTKRTPSWFSTLKNYFKANPCAAVGEIGLDKGTRGKKVDFADQIEVFQQQLQLAKDLKRPVSVHCVRAFGDLLPVMKSLGPFPAGVILHSYLGSAEMVPEFAKLGAYFSFSGYLMSLKESKAKKMLKSVPADRILLETDAPDGLPKSDNLESLFYIEKDSSHPEDHNAQVQNAAPVEGSSSDSTCCDAKNSSAVPNETLNHPANIKTVLAYVASLLDVNQEELADITYENASRLFSYEGSKLI 311
M++LFDSHCH QD RI N+ PKLI +D G+V+FAVNG SEKDW VKEMS+ YP ++P+FG+HP ++++RTP+W +TLK + P AAVGEIGLDKG+ GK++DF DQ+EVF+QQL+LAK+LK+P S+HCV+AFGDLL ++KS+GPFP+GVILHSYLGSAEMVPEF+KLGAYFSFSG+LMS+KESKAKKMLKS+P +RILLETDAPD PKS N +SLF+IE+++ + + + E ++ D+ D +SA+P E LNHPANI VLAYVA LL++ ++ELA+++Y+NA RLFSYEGSKL+
Sbjct: 1 MVRLFDSHCHFQDSRILNLAPKLIKETIDTGVVHFAVNGVSEKDWHLVKEMSERYPSVIPNFGVHPWYISERTPNWLNTLKEFLATTPSAAVGEIGLDKGSMGKRIDFTDQVEVFRQQLELAKELKKPASLHCVQAFGDLLEILKSVGPFPSGVILHSYLGSAEMVPEFSKLGAYFSFSGFLMSMKESKAKKMLKSIPTERILLETDAPDAQPKSVNPDSLFWIEREAPDSKKLTGDEDSLSSNEANTLDNRSRDKGEASALPEERLNHPANIHHVLAYVARLLEMEEKELAELSYQNAVRLFSYEGSKLV 311
BLAST of XM_017360641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314LE96 ((Uncharacterized protein {ECO:0000313|EMBL:OIT40051.1}))
HSP 1 Score: 428.713 bits (1101), Expect = 1.590e-149
Identity = 205/311 (65.92%), Postives = 254/311 (81.67%), Query Frame = 0
Match: A0A314LE96 ((Uncharacterized protein {ECO:0000313|EMBL:OIT40051.1}))
HSP 1 Score: 428.713 bits (1101), Expect = 1.590e-149
Identity = 205/311 (65.92%), Postives = 254/311 (81.67%), Query Frame = 0
Query: 1 MMKLFDSHCHLQDQRISNVVPKLITTALDNGIVYFAVNGTSEKDWPKVKEMSDSYPCILPSFGIHPLWVTKRTPSWFSTLKNYFKANPCAAVGEIGLDKGTRGKKVDFADQIEVFQQQLQLAKDLKRPVSVHCVRAFGDLLPVMKSLGPFPAGVILHSYLGSAEMVPEFAKLGAYFSFSGYLMSLKESKAKKMLKSVPADRILLETDAPDGLPKSDNLESLFYIEKDSSHPEDHNAQVQNAAPVEGSSSDSTCCDAKNSSAVPNETLNHPANIKTVLAYVASLLDVNQEELADITYENASRLFSYEGSKLI 311
MMKLFDSHCHLQD RI NVVPK+I T ++ G+V+FAVNG SEKDW VKEMSD YPCI+P+FGIHP ++T+RTP+W TLK + +A P AAVGEIGLDKG+ G+K+DFADQ++VF QQLQLAK+LKRP S+HCVRAFGDLL ++KS+GPFPAG ILHSYLGSAEMVPEFAKLG YFSFSG+LMS+KESKAKKMLKS+P DRILLETDAPD LPK + +SL+ IE+++S + ++ N G+ S++ + K + E NHPANI VL+YVASLL++ +EELA+I++ NASRLFSYEGSK++
Sbjct: 1 MMKLFDSHCHLQDPRIINVVPKIIKTTVETGVVHFAVNGVSEKDWHLVKEMSDHYPCIVPNFGIHPWFITERTPNWLKTLKGFLEATPAAAVGEIGLDKGSFGRKIDFADQVDVFGQQLQLAKELKRPASIHCVRAFGDLLELLKSVGPFPAGFILHSYLGSAEMVPEFAKLGGYFSFSGFLMSMKESKAKKMLKSIPTDRILLETDAPDALPKLSDPDSLYLIEREASVADGTSSGGGNNN---GNLSENPSQEDKGNEQQAREIPNHPANIHHVLSYVASLLELTKEELAEISFANASRLFSYEGSKVV 308
BLAST of XM_017360641.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1A957 ((uncharacterized protein LOC110415863 isoform X1 {ECO:0000313|RefSeq:XP_021283296.1}))
HSP 1 Score: 428.328 bits (1100), Expect = 1.680e-149
Identity = 200/311 (64.31%), Postives = 255/311 (81.99%), Query Frame = 0
Match: A0A6J1A957 ((uncharacterized protein LOC110415863 isoform X1 {ECO:0000313|RefSeq:XP_021283296.1}))
HSP 1 Score: 428.328 bits (1100), Expect = 1.680e-149
Identity = 200/311 (64.31%), Postives = 255/311 (81.99%), Query Frame = 0
Query: 2 MKLFDSHCHLQDQRISNVVPKLITTALDNGIVYFAVNGTSEKDWPKVKEMSDSYPCILPSFGIHPLWVTKRTPSWFSTLKNYFKANPCAAVGEIGLDKGTRGKKVDFADQIEVFQQQLQLAKDLKRPVSVHCVRAFGDLLPVMKSLGPFPAGVILHSYLGSAEMVPEFAKLGAYFSFSGYLMSLKESKAKKMLKSVPADRILLETDAPDGLPKSDNLESLFYIEKDSSHPEDHNAQVQNAAPVEGSSSDSTCCDAKNSSAVPNETLNHPANIKTVLAYVASLLDVNQEELADITYENASRLFSYEGSKLIL 312
MKLFD+HCHLQD RI N PKLI+TALD+G++ FAVNG SE+DW VKEM D YP ++P FG+HP +V +R+PSWFSTLK +F+ P AAVGEIGLDKG+RG+++DF DQIEVF+QQL+LAK+LK+P SVHCVRAFGDLL +MK +GPFP GVILHSYLGSAEMVPEFAK GAYFS SGY+M +K KAKKMLK++P++RILLE+DAPD LP S+ L SLF +++D S P++H AQ +++A + SD ++++SA+P E LNHPANI VL YVASLL++ +EELA+++Y NA +LFSY+GSK+ L
Sbjct: 1 MKLFDAHCHLQDPRILNKAPKLISTALDSGVLNFAVNGVSERDWHLVKEMGDKYPSVIPCFGVHPWYVAERSPSWFSTLKEFFETTPSAAVGEIGLDKGSRGREIDFNDQIEVFRQQLELAKELKKPASVHCVRAFGDLLQIMKDIGPFPDGVILHSYLGSAEMVPEFAKSGAYFSLSGYVMPMKTQKAKKMLKAIPSERILLESDAPDALPNSE-LGSLFLVDEDPSLPQEHFAQGRSSASNVSTPSDHQFLASRDASALPKEMLNHPANIHNVLDYVASLLEMRKEELAELSYRNAVQLFSYQGSKVPL 310
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7GVK6 | E-Value: 4.157e-158, PID: 68.59 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5944... [more] |
| A0A4S4CXN7 | E-Value: 5.175e-158, PID: 67.50 | (Uncharacterized protein {ECO:0000313|EMBL:THF9463... [more] |
| A0A5J4ZBS6 | E-Value: 1.105e-157, PID: 65.92 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8515... [more] |
| A0A5B7AMB8 | E-Value: 1.730e-157, PID: 67.95 | (Putative deoxyribonuclease tatdn3 {ECO:0000313|EM... [more] |
| F6I5I8 | E-Value: 1.486e-155, PID: 66.88 | (Uncharacterized protein {ECO:0000313|EMBL:CCB6220... [more] |
| A0A7J0G635 | E-Value: 4.986e-155, PID: 68.27 | (TatD related DNase {ECO:0000313|EMBL:GFZ06253.1})[more] |
| A0A2R6QA32 | E-Value: 6.006e-155, PID: 66.99 | (TatD family protein {ECO:0000313|EMBL:PSS04757.1}... [more] |
| A0A6I9U654 | E-Value: 8.706e-150, PID: 62.38 | (uncharacterized protein LOC105175482 {ECO:0000313... [more] |
| A0A314LE96 | E-Value: 1.590e-149, PID: 65.92 | (Uncharacterized protein {ECO:0000313|EMBL:OIT4005... [more] |
| A0A6J1A957 | E-Value: 1.680e-149, PID: 64.31 | (uncharacterized protein LOC110415863 isoform X1 {... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |