Resource Type:
Polypeptide
Name:
XM_017363679.1
Identifier:
XM_017363679.1-protein
Sequence:
MPTNFNLMDAGRYRSSLRSPLSDQMPLRKKPRRDLDRFIPNRSAMDFDFA
HFMLTGGKVEKECAAQCSPSKCAYRKHLAEIFNINRSRILSFKDKDSPSK
DVFQESFSPAQTPAKRRRHIPTSAEKTLDAPDLLDDFYLNLLDWGSGNFL
AIALGNLVYLWNAMNGDASVLVAVEDDVGPVTSVRWAPDGRHLAVGFTNS
HVQIWDSSTSKLVRTLKGHRLRVGSLDWNNSILTTGGMDCLIINNDLRIR
SHGINVYEGHSQEVCGLKWSVSGKELASGGNDNLIHIWNMSMASTNSATQ
WRHRMEEHTSAVKALAWCPFQSNLLASGGGVGDQSIKFWNSNTGACLNSV
NTGSQVCCLLWNRHEHELLSSHGFNDNQLILWKYPSMLKLSELYGHTKRV
LYMTQSPDGYTVASGAPDETLRLWKVFGDPGKVKPAAKMTEPFPNVARIR
Sequence Length:
450
Sequence Checksum:
363c23da62f03520dde0e2857b29087f
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017363679.1, derives from mRNA, XM_017363679.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017363679.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017363679.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: O23919 ((WD-repeat protein {ECO:0000313|EMBL:AAB63030.1}))
HSP 1 Score: 928.317 bits (2398), Expect = 0.000e+0
Identity = 445/450 (98.89%), Postives = 448/450 (99.56%), Query Frame = 0
Match: O23919 ((WD-repeat protein {ECO:0000313|EMBL:AAB63030.1}))
HSP 1 Score: 928.317 bits (2398), Expect = 0.000e+0
Identity = 445/450 (98.89%), Postives = 448/450 (99.56%), Query Frame = 0
Query: 1 MPTNFNLMDAGRYRSSLRSPLSDQMPLRKKPRRDLDRFIPNRSAMDFDFAHFMLTGGKVEKECAAQCSPSKCAYRKHLAEIFNINRSRILSFKDKDSPSKDVFQESFSPAQTPAKRRRHIPTSAEKTLDAPDLLDDFYLNLLDWGSGNFLAIALGNLVYLWNAMNGDASVLVAVEDDVGPVTSVRWAPDGRHLAVGFTNSHVQIWDSSTSKLVRTLKGHRLRVGSLDWNNSILTTGGMDCLIINNDLRIRSHGINVYEGHSQEVCGLKWSVSGKELASGGNDNLIHIWNMSMASTNSATQWRHRMEEHTSAVKALAWCPFQSNLLASGGGVGDQSIKFWNSNTGACLNSVNTGSQVCCLLWNRHEHELLSSHGFNDNQLILWKYPSMLKLSELYGHTKRVLYMTQSPDGYTVASGAPDETLRLWKVFGDPGKVKPAAKMTEPFPNVARIR 450
MPTNFNLMDAGRYRSSLRSPLSDQMPLRKKPRRDLDRFIPNRSAMDFDFAHFMLTGGKVEKECAAQCSPSKCAYRKHLAEIFNINRSRILSFKDKDSPSKDVFQESFSPAQTPAKRRRHIPTSAEKTLDAPDLLDDFYLNLLDWGSGNFLAIALGNLVYLWNA+NGDASVLVAVEDDVGPVTSVRWAPDGRHLAVGFTNSHVQIWDSSTSKLVRTLKGHRLRVGSLDWN+SILTTGGMDCLIINNDLRIRSHGINVYEGHSQEVCGLKWSVSGKELASGGNDNLIHIWNMSMASTNSATQWRHRMEEHTSAVKALAWCPFQSNLLASGGGVGDQSIKFWNSNTGACLNSVNTGSQVCCLLWN HEHELLSSHGFNDNQLILWKYPSMLKLSELYGHTKRVLYMT+SPDGYTVASGAPDETLRLWKVFGDP KVKPAAKMTEPFPNVARIR
Sbjct: 1 MPTNFNLMDAGRYRSSLRSPLSDQMPLRKKPRRDLDRFIPNRSAMDFDFAHFMLTGGKVEKECAAQCSPSKCAYRKHLAEIFNINRSRILSFKDKDSPSKDVFQESFSPAQTPAKRRRHIPTSAEKTLDAPDLLDDFYLNLLDWGSGNFLAIALGNLVYLWNALNGDASVLVAVEDDVGPVTSVRWAPDGRHLAVGFTNSHVQIWDSSTSKLVRTLKGHRLRVGSLDWNSSILTTGGMDCLIINNDLRIRSHGINVYEGHSQEVCGLKWSVSGKELASGGNDNLIHIWNMSMASTNSATQWRHRMEEHTSAVKALAWCPFQSNLLASGGGVGDQSIKFWNSNTGACLNSVNTGSQVCCLLWNSHEHELLSSHGFNDNQLILWKYPSMLKLSELYGHTKRVLYMTRSPDGYTVASGAPDETLRLWKVFGDPEKVKPAAKMTEPFPNVARIR 450
BLAST of XM_017363679.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B8X0 ((Putative cell division cycle 20.2, cofactor of APC complex-like {ECO:0000313|EMBL:MPA64864.1}) (Fragment))
HSP 1 Score: 668.692 bits (1724), Expect = 0.000e+0
Identity = 325/446 (72.87%), Postives = 372/446 (83.41%), Query Frame = 0
Match: A0A5B7B8X0 ((Putative cell division cycle 20.2, cofactor of APC complex-like {ECO:0000313|EMBL:MPA64864.1}) (Fragment))
HSP 1 Score: 668.692 bits (1724), Expect = 0.000e+0
Identity = 325/446 (72.87%), Postives = 372/446 (83.41%), Query Frame = 0
Query: 8 MDAGRYRSSLRSPLSDQMPLRKKPRRDLDRFIPNRSAMDFDFAHFMLTGGKVEKECAAQCSPSKCAYRKHLAEIFNINRSRILSFKDKDSPSKDVFQESFSPAQT-PAKRRRHIPTSAEKTLDAPDLLDDFYLNLLDWGSGNFLAIALGNLVYLWNAMNGDASVLVAVEDDVGPVTSVRWAPDGRHLAVGFTNSHVQIWDSSTSKLVRTLK-GHRLRVGSLDWNNSILTTGGMDCLIINNDLRIRSHGINVYEGHSQEVCGLKWSVSGKELASGGNDNLIHIWNMSMASTNSATQWRHRMEEHTSAVKALAWCPFQSNLLASGGGVGDQSIKFWNSNTGACLNSVNTGSQVCCLLWNRHEHELLSSHGFNDNQLILWKYPSMLKLSELYGHTKRVLYMTQSPDGYTVASGAPDETLRLWKVFGDPGKVKPAAKM-TEPFPNVARIR 450
MDAG +LR P+SDQM RK R +LDRFIPNRSAMDFDFA +ML GGKV KE A CSPSK AYRK L EIFN+NR+RIL+FK+K PS D FQES S Q+ P K RR+IP S+E+TLDAP+LLDDFYLNLLDW SGN LAIALGN VYLW+A +G S LV+++D++GPVTSVRWAPDGRHLAVG NSHVQ+WDS S+L+RTL+ GHR RV SLDWN+ ILTTGGMD LIINND+RIRSH I +Y GHS EVCGLKWS SG++LASGGNDNL++IWN+ M STNSATQW HR+ +HT+AVKAL+WCPFQSNLLASGGGVGDQ IKFWN++TGA LNSV+TGSQVCCLLWN+HE ELLSSHGF+DNQL LWKYPSM+K+ ELYGHT RVLYM QSPDGYTVAS A DETLRLW VFG P KP K+ +EPF ++A IR
Sbjct: 27 MDAGIRYKTLRLPISDQMCRRKNLRENLDRFIPNRSAMDFDFAQYMLMGGKVGKENPALCSPSKEAYRKQLKEIFNMNRTRILAFKNKPPPSIDGFQESSSVHQSKPTKARRYIPQSSERTLDAPELLDDFYLNLLDWSSGNILAIALGNSVYLWDATDGSTSELVSIDDEIGPVTSVRWAPDGRHLAVGLNNSHVQLWDSLASRLLRTLRDGHRSRVSSLDWNSHILTTGGMDSLIINNDVRIRSHNIGIYRGHSLEVCGLKWSASGQQLASGGNDNLLYIWNIPMGSTNSATQWLHRLVDHTAAVKALSWCPFQSNLLASGGGVGDQCIKFWNTHTGARLNSVDTGSQVCCLLWNKHERELLSSHGFHDNQLTLWKYPSMIKIMELYGHTSRVLYMAQSPDGYTVASAAADETLRLWNVFGTPELAKPTPKVKSEPFADLACIR 472
BLAST of XM_017363679.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GE01 (ANAPC4_WD40 domain-containing protein {ECO:0000259|Pfam:PF12894})
HSP 1 Score: 665.611 bits (1716), Expect = 0.000e+0
Identity = 320/448 (71.43%), Postives = 370/448 (82.59%), Query Frame = 0
Match: A0A7J7GE01 (ANAPC4_WD40 domain-containing protein {ECO:0000259|Pfam:PF12894})
HSP 1 Score: 665.611 bits (1716), Expect = 0.000e+0
Identity = 320/448 (71.43%), Postives = 370/448 (82.59%), Query Frame = 0
Query: 8 MDAGRYRSSLRSPLSDQMPLRKKPRRDLDRFIPNRSAMDFDFAHFMLTGGKVEKECAAQCSPSKCAYRKHLAEIFNINRSRILSFKDKDSPSKDVFQESFSPAQT--PAKRRRHIPTSAEKTLDAPDLLDDFYLNLLDWGSGNFLAIALGNLVYLWNAMNGDASVLVAVEDDVGPVTSVRWAPDGRHLAVGFTNSHVQIWDSSTSKLVRTL-KGHRLRVGSLDWNNSILTTGGMDCLIINNDLRIRSHGINVYEGHSQEVCGLKWSVSGKELASGGNDNLIHIWNMSMASTNSATQWRHRMEEHTSAVKALAWCPFQSNLLASGGGVGDQSIKFWNSNTGACLNSVNTGSQVCCLLWNRHEHELLSSHGFNDNQLILWKYPSMLKLSELYGHTKRVLYMTQSPDGYTVASGAPDETLRLWKVFGDPGKVKPAAKMT--EPFPNVARIR 450
MDAG R PLS++ RK +LDRFIPNRSAMDFDFAHFMLTGGKV KE + CSPSK AYRK LAEIFN+NR+RIL+FKDK PS D QES S P K RR IP S+E+ LDAP+L+DDFYLNLLDWGS N LAIALGNLVYLW+A +G + LVAV++++GPVTS+RWAPDGRHLAVG NSH+Q+WDS S+L+RTL GHR RVGSLDWNN ILTTGGMD LIINND+RIRS+ + Y GH+QEVCGLKWS +G++LASGGNDNLI++WN+SMAS +S+ QW HR+ +HT+AVKAL+WCPFQSNLLASGGGVGDQ IKFWN++TGACLNSV+ GSQVCCLLW++HE ELLSSHGF DNQLILWKYPSM+K+++LYGHT RVLYM QSPDGYTVAS A DETLRLW VFG P VKPAA + EPF N+ARIR
Sbjct: 1 MDAGMRYKGPRFPLSERNRKRKISSENLDRFIPNRSAMDFDFAHFMLTGGKVGKENPSPCSPSKEAYRKQLAEIFNMNRTRILAFKDKPPPSADTVQESISSVHQSKPTKHRRCIPQSSERILDAPELMDDFYLNLLDWGSDNILAIALGNLVYLWDATDGSITELVAVDEEIGPVTSIRWAPDGRHLAVGLNNSHIQLWDSLASRLLRTLIDGHRSRVGSLDWNNHILTTGGMDSLIINNDVRIRSNIVGTYRGHTQEVCGLKWSTTGQQLASGGNDNLIYLWNISMASNSSSNQWLHRLTDHTAAVKALSWCPFQSNLLASGGGVGDQCIKFWNTHTGACLNSVDAGSQVCCLLWSKHERELLSSHGFTDNQLILWKYPSMVKIAQLYGHTSRVLYMAQSPDGYTVASAAADETLRLWNVFGTPELVKPAAPKSNPEPFANLARIR 448
BLAST of XM_017363679.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1BL19 ((Cell division control 20 {ECO:0000313|EnsemblPlants:PGSC0003DMT400047585}))
HSP 1 Score: 639.417 bits (1648), Expect = 0.000e+0
Identity = 303/448 (67.63%), Postives = 363/448 (81.03%), Query Frame = 0
Match: M1BL19 ((Cell division control 20 {ECO:0000313|EnsemblPlants:PGSC0003DMT400047585}))
HSP 1 Score: 639.417 bits (1648), Expect = 0.000e+0
Identity = 303/448 (67.63%), Postives = 363/448 (81.03%), Query Frame = 0
Query: 8 MDAGRYRSSLRSPLSDQMPLRKKPRRDLDRFIPNRSAMDFDFAHFMLTGGKVEKECAAQCSPSKCAYRKHLAEIFNINRSRILSFKDKDSPSKDVFQESFSPAQTPA--KRRRHIPTSAEKTLDAPDLLDDFYLNLLDWGSGNFLAIALGNLVYLWNAMNGDASVLVAVEDDVGPVTSVRWAPDGRHLAVGFTNSHVQIWDS--STSKLVRTLKGHRLRVGSLDWNNSILTTGGMDCLIINNDLRIRSHGINVYEGHSQEVCGLKWSVSGKELASGGNDNLIHIWNMSMASTNSATQWRHRMEEHTSAVKALAWCPFQSNLLASGGGVGDQSIKFWNSNTGACLNSVNTGSQVCCLLWNRHEHELLSSHGFNDNQLILWKYPSMLKLSELYGHTKRVLYMTQSPDGYTVASGAPDETLRLWKVFGDPGKVKPAAKMT-EPFPNVARIR 450
MDAG + R PL +QM +K+ R +LDRFIPNRSAMDFD+AH+ML+GGKV+KE SPSK AY K LAEIFN+NR+RIL+FK+K S + ES S Q K+RR+IP S+E+TLDAPD+LDDFYLNLLDWGS N LAIALGN VYLW+A + A+ L+ V+DD GPVT+V W+PDGRHLAVG NSHVQ+W++ + +L+RTL+GH LRVGSLDWN +ILTTGGMD +IINND+R+RSH + Y GH+QE+CGLKWS SG++LASGGNDNL+HIW++SM S NS QW HRM +HT+AVKAL+WCPFQSN++ASGGGVGDQ IKFWN+NTGACLNSVNTGSQVC LLWNRH+ ELLSSHGF DNQL +WKYPSM+K+SEL GHT RVLYM QSPDGYTVA+ A DETLRLW VFG P + KP K EPF ++A+IR
Sbjct: 1 MDAGSRYNKFRPPLVNQMSHKKRTRENLDRFIPNRSAMDFDYAHYMLSGGKVKKEHYGVNSPSKEAYSKQLAEIFNMNRTRILAFKNKPPHSAERVSESPSSIQQSKTIKKRRYIPQSSERTLDAPDILDDFYLNLLDWGSNNILAIALGNSVYLWDASDESATELLTVDDDFGPVTAVSWSPDGRHLAVGLNNSHVQLWNTLQGSCRLLRTLRGHSLRVGSLDWNENILTTGGMDSMIINNDVRVRSHIVGTYRGHNQEICGLKWSASGQQLASGGNDNLVHIWSISMGSANSTHQWVHRMTDHTAAVKALSWCPFQSNMVASGGGVGDQCIKFWNTNTGACLNSVNTGSQVCSLLWNRHDRELLSSHGFTDNQLTVWKYPSMMKISELLGHTSRVLYMAQSPDGYTVATAAADETLRLWNVFGSPKETKPVLKRKLEPFFDLAQIR 448
BLAST of XM_017363679.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7HJM6 (ANAPC4_WD40 domain-containing protein {ECO:0000259|Pfam:PF12894})
HSP 1 Score: 639.032 bits (1647), Expect = 0.000e+0
Identity = 304/448 (67.86%), Postives = 364/448 (81.25%), Query Frame = 0
Match: A0A3Q7HJM6 (ANAPC4_WD40 domain-containing protein {ECO:0000259|Pfam:PF12894})
HSP 1 Score: 639.032 bits (1647), Expect = 0.000e+0
Identity = 304/448 (67.86%), Postives = 364/448 (81.25%), Query Frame = 0
Query: 8 MDAGRYRSSLRSPLSDQMPLRKKPRRDLDRFIPNRSAMDFDFAHFMLTGGKVEKECAAQCSPSKCAYRKHLAEIFNINRSRILSFKDKDSPSKDVFQESFSPAQTP--AKRRRHIPTSAEKTLDAPDLLDDFYLNLLDWGSGNFLAIALGNLVYLWNAMNGDASVLVAVEDDVGPVTSVRWAPDGRHLAVGFTNSHVQIWDS--STSKLVRTLKGHRLRVGSLDWNNSILTTGGMDCLIINNDLRIRSHGINVYEGHSQEVCGLKWSVSGKELASGGNDNLIHIWNMSMASTNSATQWRHRMEEHTSAVKALAWCPFQSNLLASGGGVGDQSIKFWNSNTGACLNSVNTGSQVCCLLWNRHEHELLSSHGFNDNQLILWKYPSMLKLSELYGHTKRVLYMTQSPDGYTVASGAPDETLRLWKVFGDPGKVKPAAKMT-EPFPNVARIR 450
MDAG + R PL +QM +K+ R +LDRFIPNRSAMDFD+AH+ML+GGKV+KE SPSK AY K LAEIFN+NR+RIL+FK+K S + ES S Q P K+RR+IP S+E+TLDAPD+LDDFYLNLLDWGS N +AIALGN VYLW+A +G + L+ V+DD GPVT+V W+PDGR LAVG NSHVQ+W++ +S+L+RTL+GHRLRVGSLDWN ILTTGGMD +IINND+RIRSH + Y GH+QE+CGLKWS SG++LASGGNDNL+HIW++SM S NS QW HRM +HTSAVKAL+WCPFQSN++ASGGG+GDQ IKFWN+NTGACLNSVNTGSQVC LLWNRH+ ELLSSHGF DNQL +WKYPSM K+SEL GHT RVL+M QSPDGYTVA+ A DETLRLW VFG+P + KP K EPF ++A+IR
Sbjct: 1 MDAGSRYNKFRPPLVNQMSHKKRTRENLDRFIPNRSAMDFDYAHYMLSGGKVKKEHYGVNSPSKEAYSKQLAEIFNMNRTRILAFKNKPPHSAERVSESPSSIQQPKTVKKRRYIPQSSERTLDAPDILDDFYLNLLDWGSNNVIAIALGNSVYLWDASDGSVTELLTVDDDFGPVTAVSWSPDGRSLAVGLNNSHVQLWNTLQGSSRLLRTLQGHRLRVGSLDWNGHILTTGGMDGMIINNDVRIRSHIVGTYRGHNQEICGLKWSASGQQLASGGNDNLVHIWSISMGSANSTHQWVHRMTDHTSAVKALSWCPFQSNMVASGGGIGDQCIKFWNTNTGACLNSVNTGSQVCSLLWNRHDRELLSSHGFIDNQLAVWKYPSMTKISELLGHTSRVLHMAQSPDGYTVATAAADETLRLWNVFGNPTETKPVLKRKLEPFFDLAQIR 448
BLAST of XM_017363679.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D2U580 ((Cell division control 20 {ECO:0000313|EMBL:CBH19894.1}))
HSP 1 Score: 639.032 bits (1647), Expect = 0.000e+0
Identity = 304/448 (67.86%), Postives = 364/448 (81.25%), Query Frame = 0
Match: D2U580 ((Cell division control 20 {ECO:0000313|EMBL:CBH19894.1}))
HSP 1 Score: 639.032 bits (1647), Expect = 0.000e+0
Identity = 304/448 (67.86%), Postives = 364/448 (81.25%), Query Frame = 0
Query: 8 MDAGRYRSSLRSPLSDQMPLRKKPRRDLDRFIPNRSAMDFDFAHFMLTGGKVEKECAAQCSPSKCAYRKHLAEIFNINRSRILSFKDKDSPSKDVFQESFSPAQTP--AKRRRHIPTSAEKTLDAPDLLDDFYLNLLDWGSGNFLAIALGNLVYLWNAMNGDASVLVAVEDDVGPVTSVRWAPDGRHLAVGFTNSHVQIWDS--STSKLVRTLKGHRLRVGSLDWNNSILTTGGMDCLIINNDLRIRSHGINVYEGHSQEVCGLKWSVSGKELASGGNDNLIHIWNMSMASTNSATQWRHRMEEHTSAVKALAWCPFQSNLLASGGGVGDQSIKFWNSNTGACLNSVNTGSQVCCLLWNRHEHELLSSHGFNDNQLILWKYPSMLKLSELYGHTKRVLYMTQSPDGYTVASGAPDETLRLWKVFGDPGKVKPAAKMT-EPFPNVARIR 450
MDAG + R PL +QM +K+ R +LDRFIPNRSAMDFD+AH+ML+GGKV+KE SPSK AY K LAEIFN+NR+RIL+FK+K S + ES S Q P K+RR+IP S+E+TLDAPD+LDDFYLNLLDWGS N +AIALGN VYLW+A +G + L+ V+DD GPVT+V W+PDGR LAVG NSHVQ+W++ +S+L+RTL+GHRLRVGSLDWN ILTTGGMD +IINND+RIRSH + Y GH+QE+CGLKWS SG++LASGGNDNL+HIW++SM S NS QW HRM +HTSAVKAL+WCPFQSN++ASGGG+GDQ IKFWN+NTGACLNSVNTGSQVC LLWNRH+ ELLSSHGF DNQL +WKYPSM K+SEL GHT RVL+M QSPDGYTVA+ A DETLRLW VFG+P + KP K EPF ++A+IR
Sbjct: 1 MDAGSRYNKFRPPLVNQMSHKKRTRENLDRFIPNRSAMDFDYAHYMLSGGKVKKEHYGVNSPSKEAYSKQLAEIFNMNRTRILAFKNKPPHSAERVSESPSSIQQPKTVKKRRYIPQSSERTLDAPDILDDFYLNLLDWGSNNVIAIALGNSVYLWDASDGSVTELLTVDDDFGPVTAVSWSPDGRSLAVGLNNSHVQLWNTLQGSSRLLRTLQGHRLRVGSLDWNGHILTTGGMDGMIINNDVRIRSHIVGTYRGHNQEICGLKWSASGQQLASGGNDNLVHIWSISMGSANSTHQWVHRMTDHTSAVKALSWCPFQSNMVASGGGIGDQCIKFWNTNTGACLNSVNTGSQVCSLLWNRHDRELLSSHGFIDNQLAVWKYPSMTKISELLGHTSRVLHMAQSPDGYTVATAAADETLRLWNVFGNPTETKPVLKRKLEPFFDLAQIR 448
BLAST of XM_017363679.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2CE99 (ANAPC4_WD40 domain-containing protein {ECO:0000259|Pfam:PF12894})
HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 302/448 (67.41%), Postives = 362/448 (80.80%), Query Frame = 0
Match: A0A6N2CE99 (ANAPC4_WD40 domain-containing protein {ECO:0000259|Pfam:PF12894})
HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 302/448 (67.41%), Postives = 362/448 (80.80%), Query Frame = 0
Query: 8 MDAGRYRSSLRSPLSDQMPLRKKPRRDLDRFIPNRSAMDFDFAHFMLTGGKVEKECAAQCSPSKCAYRKHLAEIFNINRSRILSFKDKDSPSKDVFQESFSPAQTP--AKRRRHIPTSAEKTLDAPDLLDDFYLNLLDWGSGNFLAIALGNLVYLWNAMNGDASVLVAVEDDVGPVTSVRWAPDGRHLAVGFTNSHVQIWDS--STSKLVRTLKGHRLRVGSLDWNNSILTTGGMDCLIINNDLRIRSHGINVYEGHSQEVCGLKWSVSGKELASGGNDNLIHIWNMSMASTNSATQWRHRMEEHTSAVKALAWCPFQSNLLASGGGVGDQSIKFWNSNTGACLNSVNTGSQVCCLLWNRHEHELLSSHGFNDNQLILWKYPSMLKLSELYGHTKRVLYMTQSPDGYTVASGAPDETLRLWKVFGDPGKVKPAAKMT-EPFPNVARIR 450
MDAG + R PL +QM +K+ R +LDRFIPNRSAMDFD+AH+ML+GGKV+KE SPSK AY K LAEIFN+NR+RIL+FK+K S + ES S Q K+RR+IP S+E+TLDAPD+LDDFYLNLLDWGS N +AIAL N VYLW+A +G + L+ V+DD GPVT+V W+PDGR LAVG NSHVQ+W++ +S+L+RTL+GHRLRVGSLDWN ILTTGGMD +IINND+RIRSH + Y GH+QE+CGLKWS SG++LASGGNDNL+HIW++SM S NS QW HRM +HTSAVKAL+WCPFQSN++ASGGG+GDQ IKFWN+NTGACLNSVNTGSQVC LLWNRH+ ELLSSHGF DNQL +WKYPSM K+SEL GHT RVL+M QSPDGYTVA+ A DETLRLW VFG+P + KP K EPF ++A+IR
Sbjct: 1 MDAGSRYNKFRPPLVNQMSHKKRTRENLDRFIPNRSAMDFDYAHYMLSGGKVKKEHCGVNSPSKEAYSKQLAEIFNMNRTRILAFKNKPPHSTERVSESPSSIQQSKTVKKRRYIPQSSERTLDAPDILDDFYLNLLDWGSNNVIAIALRNSVYLWDASDGSVTELLTVDDDFGPVTAVSWSPDGRSLAVGLNNSHVQLWNTLQGSSRLLRTLQGHRLRVGSLDWNGHILTTGGMDGMIINNDVRIRSHIVGTYRGHNQEICGLKWSASGQQLASGGNDNLVHIWSISMGSANSTQQWVHRMTDHTSAVKALSWCPFQSNMVASGGGIGDQCIKFWNTNTGACLNSVNTGSQVCSLLWNRHDRELLSSHGFIDNQLAVWKYPSMTKISELLGHTSRVLHMAQSPDGYTVATAAADETLRLWNVFGNPTETKPVLKRKLEPFFDLAQIR 448
BLAST of XM_017363679.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4ETT1 (ANAPC4_WD40 domain-containing protein {ECO:0000259|Pfam:PF12894})
HSP 1 Score: 632.869 bits (1631), Expect = 0.000e+0
Identity = 296/399 (74.19%), Postives = 341/399 (85.46%), Query Frame = 0
Match: A0A4S4ETT1 (ANAPC4_WD40 domain-containing protein {ECO:0000259|Pfam:PF12894})
HSP 1 Score: 632.869 bits (1631), Expect = 0.000e+0
Identity = 296/399 (74.19%), Postives = 341/399 (85.46%), Query Frame = 0
Query: 35 LDRFIPNRSAMDFDFAHFMLTGGKVEKECAAQCSPSKCAYRKHLAEIFNINRSRILSFKDKDSPSKDVFQESFSPAQT--PAKRRRHIPTSAEKTLDAPDLLDDFYLNLLDWGSGNFLAIALGNLVYLWNAMNGDASVLVAVEDDVGPVTSVRWAPDGRHLAVGFTNSHVQIWDSSTSKLVRTL-KGHRLRVGSLDWNNSILTTGGMDCLIINNDLRIRSHGINVYEGHSQEVCGLKWSVSGKELASGGNDNLIHIWNMSMASTNSATQWRHRMEEHTSAVKALAWCPFQSNLLASGGGVGDQSIKFWNSNTGACLNSVNTGSQVCCLLWNRHEHELLSSHGFNDNQLILWKYPSMLKLSELYGHTKRVLYMTQSPDGYTVASGAPDETLRLWKVFGDP 430
LDRFIPNRSAMDFDFAHFMLTGGKV KE + CSPSK AYRK LAEIFN+NR+RIL+FKDK PS D QE S P K RR IP S+E+ LDAP+L+DDFYLNLLDWGS N LAIALGNLVYLW+A +G + LVAV++++GPVTS+RWAPDGRHLAVG NSH+Q+WDS S+L+RTL GHR RVGSLDWNN ILTTGGMD LIINND+RIRS+ + Y GH+QEVCGLKWS +G++LASGGNDNLI++WN+SMAS +S+ QW HR+ +HT+AVKAL+WCPFQSNLLASGGGVGDQ IKFWN++TGACLNSV+ GSQVCCLLW++HE ELLSSHGF DNQLILWKYPSM+K+++LYGHT RVLYM QSPDGYTVAS A DETLRLW VFG P
Sbjct: 21 LDRFIPNRSAMDFDFAHFMLTGGKVGKENPSPCSPSKEAYRKQLAEIFNMNRTRILAFKDKPPPSADTVQEPISSVHQSKPTKHRRCIPQSSERILDAPELMDDFYLNLLDWGSDNILAIALGNLVYLWDATDGSITELVAVDEEIGPVTSIRWAPDGRHLAVGLNNSHIQLWDSLASRLLRTLIDGHRSRVGSLDWNNHILTTGGMDSLIINNDVRIRSNIVGTYRGHTQEVCGLKWSTTGQQLASGGNDNLIYLWNISMASNSSSNQWLHRLTDHTAAVKALSWCPFQSNLLASGGGVGDQCIKFWNTHTGACLNSVDAGSQVCCLLWSKHERELLSSHGFTDNQLILWKYPSMVKIAQLYGHTSRVLYMAQSPDGYTVASAAADETLRLWNVFGTP 419
BLAST of XM_017363679.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4AI41 ((cell division cycle 20.1, cofactor of APC complex-like {ECO:0000313|RefSeq:XP_016476093.1}))
HSP 1 Score: 632.098 bits (1629), Expect = 0.000e+0
Identity = 296/447 (66.22%), Postives = 360/447 (80.54%), Query Frame = 0
Match: A0A1S4AI41 ((cell division cycle 20.1, cofactor of APC complex-like {ECO:0000313|RefSeq:XP_016476093.1}))
HSP 1 Score: 632.098 bits (1629), Expect = 0.000e+0
Identity = 296/447 (66.22%), Postives = 360/447 (80.54%), Query Frame = 0
Query: 8 MDAG-RYRSSLRSPLSDQMPLRKKPRRDLDRFIPNRSAMDFDFAHFMLTGGKVEKECAAQCSPSKCAYRKHLAEIFNINRSRILSFKDKDSPSKDVFQESFSPAQTP--AKRRRHIPTSAEKTLDAPDLLDDFYLNLLDWGSGNFLAIALGNLVYLWNAMNGDASVLVAVEDDVGPVTSVRWAPDGRHLAVGFTNSHVQIWDSSTSKLVRTLKGHRLRVGSLDWNNSILTTGGMDCLIINNDLRIRSHGINVYEGHSQEVCGLKWSVSGKELASGGNDNLIHIWNMSMASTNSATQWRHRMEEHTSAVKALAWCPFQSNLLASGGGVGDQSIKFWNSNTGACLNSVNTGSQVCCLLWNRHEHELLSSHGFNDNQLILWKYPSMLKLSELYGHTKRVLYMTQSPDGYTVASGAPDETLRLWKVFGDPGKVKPAAKMT-EPFPNVARIR 450
MDAG RY + R PL + +K R +LDRFIPNRSAMDFD+AH+ML+GGKV+KE + S SK AY K LAEIFN+NR+RIL+FK+K PS + +S SP Q K+RR IP +AE+TLDAPD+LDDFYLNLLDWG N +AIALGN VYLW+A +G + L++V DD+GPVT V WAPDGRHLA+G NSHVQ+WDS +S+L+RTL GH LRVGSLDWN ILTTG MD +IINND+RIRSH + Y GH+QE+CGLKWS SG++LASGGNDNL+H+W++SM S NS QW HRM +HT+AVKA++WCPFQSN++ASGGGVGD+ IKFWN+NTGACLNSV+TGSQVC LLWN+HE ELLSSHGF DNQL +WKYPSM K++EL+GHT RVL+M QSPDGYTVA+ A DETLR W +FG+P + KP K EPF ++A+IR
Sbjct: 1 MDAGSRYNNKFRRPLFTPISHKKTSRENLDRFIPNRSAMDFDYAHYMLSGGKVKKENSGVNSASKEAYTKQLAEIFNMNRTRILAFKNKPPPSAERVSKSPSPIQQSKTTKKRRFIPQTAERTLDAPDILDDFYLNLLDWGCSNIVAIALGNSVYLWDASDGSVTELLSVSDDLGPVTGVSWAPDGRHLALGLNNSHVQLWDSRSSRLLRTLTGHNLRVGSLDWNGHILTTGSMDTMIINNDVRIRSHVVGTYRGHNQEICGLKWSASGQQLASGGNDNLVHVWSLSMGSLNSTRQWIHRMTDHTAAVKAISWCPFQSNMVASGGGVGDECIKFWNTNTGACLNSVDTGSQVCLLLWNKHERELLSSHGFTDNQLTVWKYPSMTKVAELFGHTSRVLHMAQSPDGYTVATAAADETLRFWNIFGNPEETKPVPKRKLEPFFDLAQIR 447
BLAST of XM_017363679.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7XY12 ((cell division cycle 20.1, cofactor of APC complex-like isoform X1 {ECO:0000313|RefSeq:XP_009794506.1}))
HSP 1 Score: 631.713 bits (1628), Expect = 0.000e+0
Identity = 298/447 (66.67%), Postives = 360/447 (80.54%), Query Frame = 0
Match: A0A1U7XY12 ((cell division cycle 20.1, cofactor of APC complex-like isoform X1 {ECO:0000313|RefSeq:XP_009794506.1}))
HSP 1 Score: 631.713 bits (1628), Expect = 0.000e+0
Identity = 298/447 (66.67%), Postives = 360/447 (80.54%), Query Frame = 0
Query: 8 MDAG-RYRSSLRSPLSDQMPLRKKPRRDLDRFIPNRSAMDFDFAHFMLTGGKVEKECAAQCSPSKCAYRKHLAEIFNINRSRILSFKDKDSPSKDVFQESFSPAQTP--AKRRRHIPTSAEKTLDAPDLLDDFYLNLLDWGSGNFLAIALGNLVYLWNAMNGDASVLVAVEDDVGPVTSVRWAPDGRHLAVGFTNSHVQIWDSSTSKLVRTLKGHRLRVGSLDWNNSILTTGGMDCLIINNDLRIRSHGINVYEGHSQEVCGLKWSVSGKELASGGNDNLIHIWNMSMASTNSATQWRHRMEEHTSAVKALAWCPFQSNLLASGGGVGDQSIKFWNSNTGACLNSVNTGSQVCCLLWNRHEHELLSSHGFNDNQLILWKYPSMLKLSELYGHTKRVLYMTQSPDGYTVASGAPDETLRLWKVFGDPGKVKPAAKMT-EPFPNVARIR 450
MDAG RY + R PL + +K R +LDRFIPNRSAMDFD+AH+ML+GGKV+KE + S SK AY K LAEIFN+NR+RIL+FK+K PS + +S SP Q K+RR IP +AE+TLDAPD+LDDFYLNLLDWG N +AIALGN VYLW+A +G + L++V DD+GPVT V WAPDGRHLA+G NSHVQ+WDS +S+L+RTL+GH LRVGSLDWN ILTTG MD +IINND+RIRSH + Y GH+QE+CGLKWS SG++LASGGNDNL+HIW++SM S NS QW HRM +HT+AVKAL+WCPFQSN++ASGGGVGD+ IKFWN+NTGACLNSV+TGSQVC LLWNRHE ELLSSHGF DNQL +WKYPSM K++E +GHT RVL+M QSPDGYTVA+ A DETLR W +FG+P + K A K EPF ++A+IR
Sbjct: 1 MDAGSRYNNKFRRPLFTPVSHKKTSRENLDRFIPNRSAMDFDYAHYMLSGGKVKKENSGVNSASKEAYTKQLAEIFNMNRTRILAFKNKPPPSAERVSKSPSPIQQSMTTKKRRFIPQTAERTLDAPDILDDFYLNLLDWGCSNIVAIALGNSVYLWDASDGSVTELLSVSDDLGPVTGVSWAPDGRHLALGLNNSHVQLWDSRSSRLLRTLQGHSLRVGSLDWNGHILTTGSMDTMIINNDVRIRSHVVGTYRGHNQEICGLKWSASGQQLASGGNDNLVHIWSVSMGSPNSTRQWIHRMTDHTAAVKALSWCPFQSNMVASGGGVGDECIKFWNTNTGACLNSVDTGSQVCSLLWNRHERELLSSHGFTDNQLTVWKYPSMTKVAEFFGHTSRVLHMAQSPDGYTVATAAADETLRFWNIFGNPEETKSAPKRKLEPFFDLAQIR 447
| Match Name | Stats | Description |
|---|---|---|
| O23919 | E-Value: 0.000e+0, PID: 98.89 | (WD-repeat protein {ECO:0000313|EMBL:AAB63030.1})[more] |
| A0A5B7B8X0 | E-Value: 0.000e+0, PID: 72.87 | (Putative cell division cycle 20.2, cofactor of AP... [more] |
| A0A7J7GE01 | E-Value: 0.000e+0, PID: 71.43 | ANAPC4_WD40 domain-containing protein {ECO:0000259... [more] |
| M1BL19 | E-Value: 0.000e+0, PID: 67.63 | (Cell division control 20 {ECO:0000313|EnsemblPlan... [more] |
| A0A3Q7HJM6 | E-Value: 0.000e+0, PID: 67.86 | ANAPC4_WD40 domain-containing protein {ECO:0000259... [more] |
| D2U580 | E-Value: 0.000e+0, PID: 67.86 | (Cell division control 20 {ECO:0000313|EMBL:CBH198... [more] |
| A0A6N2CE99 | E-Value: 0.000e+0, PID: 67.41 | ANAPC4_WD40 domain-containing protein {ECO:0000259... [more] |
| A0A4S4ETT1 | E-Value: 0.000e+0, PID: 74.19 | ANAPC4_WD40 domain-containing protein {ECO:0000259... [more] |
| A0A1S4AI41 | E-Value: 0.000e+0, PID: 66.22 | (cell division cycle 20.1, cofactor of APC complex... [more] |
| A0A1U7XY12 | E-Value: 0.000e+0, PID: 66.67 | (cell division cycle 20.1, cofactor of APC complex... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |