XM_017360009.1

Resource Type: 
Polypeptide
Name: 
XM_017360009.1
Identifier: 
XM_017360009.1-protein
Sequence: 
MPTKPPTTSTSKNIKDLIFITLLAFFFKILLIPSYHSTDFEVHRHWLALT
HSLPLSHWYLDETSPWTLDYPPFFAHFEHFLSFFANLVDPIIVDLHKGLN
FDGPSVIVFQRLSVIVSESVLIYGVYLLGRKCGFRERVLMWVLVVWSPGL
VIVDHVHFQYNGFLLGILLVSLAALEDRNDLLGGFVFAVLLCFKHLFAVA
APVYFVYLLRHYCRGGVFKGFGRLVMMGTVVAAVFVVAYGPFVYYGQIQQ
VFSRMFPFGRGLCHAYWAPNFWVFYIILDKVLSVLLVKMGFDIKAPTASF
TGGLVGDSSPFAVLPTVTPLATLILVLLAMSPCLYKAWKNPQPRMITRWV
AYAYFCGFLFGWHVHEKASLHFVIPLAIVAVQSMDDAKHYYLMSIVSSYS
LFPLLYEAQEYPLKVLLLTLHVILMWYGFSSQLSKTVVSNTSAQRKKKDD
NYDLKKNSGTNPRKFTLNWIEKSYLSGLLLVEVWSQFLHPAFLGIRLPFL
PLMMISIYCAFGMMYSWMWQLHWIVKSH
Sequence Length: 
528
Sequence Checksum: 
924a6b69c9de507977bba2c65cee882f
View location in JBrowse: 
DCARv2_Chr7:22133785..22137130-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017360009.1, derives from mRNA, XM_017360009.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017360009.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017360009.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RCW6 (Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBase:RU363110} (2.4.1.- {ECO:0000256|RuleBase:RU363110}))

HSP 1 Score: 776.163 bits (2003), Expect = 0.000e+0
Identity = 389/528 (73.67%), Postives = 442/528 (83.71%), Query Frame = 0
 
Query:    4 KPPTTSTSKN-IKDLIFITLLAFFFKILLIPSYHSTDFEVHRHWLALTHSLPLSHWYLDETSPWTLDYPPFFAHFEHFLSFFANLVDPIIVDLHKGLNFDGPSVIVFQRLSVIVSESVLIYGVYLLGRKCGFRERVLMWVLVVWSPGLVIVDHVHFQYNGFLLGILLVSLAALEDRNDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGVFKGFGRLVMMGTVVAAVFVVAYGPFVYYGQIQQVFSRMFPFGRGLCHAYWAPNFWVFYIILDKVLSVLLVKMGFDIKAPTASFTGGLVGDSSPFAVLPTVTPLATLILVLLAMSPCLYKAWKNPQPRMITRWVAYAYFCGFLFGWHVHEKASLHFVIPLAIVAVQSMDDAKHYYLMSIVSSYSLFPLLYEAQEYPLKVLLLTLHVILMWYGFSSQLSKTVVSNTSAQRKKKDDNYDLKKNSGT--NPRKFTLNWIEKSYLSGLLLVEVWSQFLHPAFLGIRLPFLPLMMISIYCAFGMMYSWMWQLHWIVKSH 528
             P TT +  N I DL + +L+A   K+LLIPSYHS+DFEVHRHWLALTHSL L +WYLDETSPWTLDYPPFFA+FE FLS FA LVDP IVDLH GLN+  PSVI+FQRL+V+VS+ VLI+G+Y LGRK G RER L+W+LVVWSPGL+IVDH+HFQYNGFLLGILLVSL+ LE+  DL+GGFVFAVLLCFKHLFAVA PVYFVYLLRHYCRGG  +GFGRLV MGTVV AVFV AYGPFVYYGQIQQVF RMFPFGRGLCHAYWAPNFWVFYI+LDK L+ ++ K+GF I+ PTASFTGGLVGDSSPFAVLP VTPL T +LVL+A+ PCL KAW+NPQP MITRWVAYAY CGFLFGWHVHEKASLHFVIPLAIVA QSM+DA+HY+++SIVS YSLFPLL+EAQEYP+KVLLL LH ILMW+GFSSQ S+   + T A  +KK     LK++ GT    + F + WI  SYL GLL+VE W QFLHP  LG RLPFLPL+MISIYCA GMMYSW+WQL  I+ + 
Sbjct:    6 NPKTTISIPNPIFDLAWFSLIATCVKLLLIPSYHSSDFEVHRHWLALTHSLSLPNWYLDETSPWTLDYPPFFAYFERFLSLFAKLVDPTIVDLHDGLNYKSPSVIIFQRLTVMVSDMVLIFGIYRLGRKLGSRERNLIWILVVWSPGLLIVDHMHFQYNGFLLGILLVSLSCLEEGRDLVGGFVFAVLLCFKHLFAVAGPVYFVYLLRHYCRGGWVRGFGRLVAMGTVVVAVFVAAYGPFVYYGQIQQVFHRMFPFGRGLCHAYWAPNFWVFYILLDKGLAFVVAKLGFTIQVPTASFTGGLVGDSSPFAVLPKVTPLITFVLVLVALFPCLIKAWRNPQPSMITRWVAYAYTCGFLFGWHVHEKASLHFVIPLAIVATQSMEDARHYFILSIVSCYSLFPLLFEAQEYPIKVLLLLLHSILMWFGFSSQFSQITSAKTRATSQKKGYKSGLKESPGTVMQKQAFNIGWIGTSYLLGLLVVETWGQFLHPIILGNRLPFLPLLMISIYCALGMMYSWIWQLRRIISTR 533
[Close]
BLAST of XM_017360009.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6KSV8 (Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBase:RU363110} (2.4.1.- {ECO:0000256|RuleBase:RU363110}))

HSP 1 Score: 760.755 bits (1963), Expect = 0.000e+0
Identity = 361/523 (69.02%), Postives = 435/523 (83.17%), Query Frame = 0
 
Query:    6 PTTSTSKNIKDLIFITLLAFFFKILLIPSYHSTDFEVHRHWLALTHSLPLSHWYLDETSPWTLDYPPFFAHFEHFLSFFANLVDPIIVDLHKGLNFDGPSVIVFQRLSVIVSESVLIYGVYLLGRKCGFRERVLMWVLVVWSPGLVIVDHVHFQYNGFLLGILLVSLAALEDRNDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGVFKGFGRLVMMGTVVAAVFVVAYGPFVYYGQIQQVFSRMFPFGRGLCHAYWAPNFWVFYIILDKVLSVLLVKMGFDIKAPTASFTGGLVGDSSPFAVLPTVTPLATLILVLLAMSPCLYKAWKNPQPRMITRWVAYAYFCGFLFGWHVHEKASLHFVIPLAIVAVQSMDDAKHYYLMSIVSSYSLFPLLYEAQEYPLKVLLLTLHVILMWYGFSSQLSKTVVSNTSAQRKKKDDNYDLKKNSGTNPRKFTLNWIEKSYLSGLLLVEVWSQFLHPAFLGIRLPFLPLMMISIYCAFGMMYSWMWQLHWIVKSH 528
            P    +K IK++++++L+A   K+LLIP+YHSTDFEVHR+WLA+THSLPLS WY D+TSPWTLDYPPFFAHFEHFLSFFA+LVDPI+V LH GLN+     I FQRL+VI+S+ VL++G+Y L R  G++ERVL+WVLV++SPGL+IVDH+HFQYNGFLLG+LL+S++ALE+ NDLLGGFVFA+LLCFKHLFAVAAPVYFVYLLRHYCRGG+ +GFGRLV+MG+ V  VF  AYGPF+Y+GQIQQVF RMFPFGRGLCHAYWAPNFWVFYII DKVL+ LLVKMGF+++APTASFTGGLVGDS+PFAVLP +TP+ T   VLLA++PCL KAW+ PQPRMITRW+AYAY CGF+FGWHVHEKASLHFVIPLAI+A++S++DAKHY+ +SIVS YSLFPLL+EAQEYP+KVLLL LH  LMW GFSS  + T      +++K+ D              +F + W  K YL GLL VE++ Q +HP     RLPFLPLM+ISIYCAFGMMYSWMWQL  I+K H
Sbjct:   15 PKPKANKPIKEILWVSLVATCIKLLLIPAYHSTDFEVHRNWLAITHSLPLSQWYSDQTSPWTLDYPPFFAHFEHFLSFFASLVDPIMVHLHHGLNYKSLPTIYFQRLTVIISDFVLVFGIYRLTRNLGYKERVLIWVLVIFSPGLMIVDHLHFQYNGFLLGMLLISISALEEGNDLLGGFVFAILLCFKHLFAVAAPVYFVYLLRHYCRGGLIRGFGRLVIMGSAVVTVFAAAYGPFLYHGQIQQVFHRMFPFGRGLCHAYWAPNFWVFYIIFDKVLAFLLVKMGFNVQAPTASFTGGLVGDSTPFAVLPRITPMITFGFVLLAIAPCLIKAWREPQPRMITRWIAYAYTCGFMFGWHVHEKASLHFVIPLAIIALKSVEDAKHYFYLSIVSCYSLFPLLFEAQEYPIKVLLLLLHASLMWIGFSSHFATTARKTAESEQKRYDKT------------RFVIGWFGKLYLVGLLAVEIYGQLVHPILFTERLPFLPLMLISIYCAFGMMYSWMWQLRQIIKLH 525
[Close]
BLAST of XM_017360009.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H3S9 (Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBase:RU363110} (2.4.1.- {ECO:0000256|RuleBase:RU363110}))

HSP 1 Score: 759.599 bits (1960), Expect = 0.000e+0
Identity = 392/527 (74.38%), Postives = 438/527 (83.11%), Query Frame = 0
 
Query:    4 KPPTTSTSKNIKDLIFITLLAFFFKILLIPSYHSTDFEVHRHWLALTHSLPLSHWYLDETSPWTLDYPPFFAHFEHFLSFFANLVDPIIVDLHKGLNFDGPSVIVFQRLSVIVSESVLIYGVYLLGRKCGFRERVLMWVLVVWSPGLVIVDHVHFQYNGFLLGILLVSLAALEDRNDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGVFKGFGRLVMMGTVVAAVFVVAYGPFVYYGQIQQVFSRMFPFGRGLCHAYWAPNFWVFYIILDKVLSVLLVKMGFDIKAPTASFTGGLVGDSSPFAVLPTVTPLATLILVLLAMSPCLYKAWKNPQPRMITRWVAYAYFCGFLFGWHVHEKASLHFVIPLAIVAVQSMDDAKHYYLMSIVSSYSLFPLLYEAQEYPLKVLLLTLHVILMWYGFSSQLSKTVVSNTSAQRKKKDDNYDLKKNSG--TNPRKFTLNWIEKSYLSGLLLVEVWSQFLHPAFLGIRLPFLPLMMISIYCAFGMMYSWMWQLHWIVKSH 528
            K   T+ S  I DL +  L+A   K+LLIP+Y STDFEVHRHWLALTHSLPLS WY DETSPWTLDYPPFFA+FE FLS F  L DP IV LH GLN+   S+IVF RL+VIV ++VLIYGVY L RK G RERVL+WVLVVWSPGL+IVDH+HFQYNGFLLG+LL+SL+ LED  DL+GGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGG+ KGFGRLVMMGTVV AVFV AYGPFVYYGQIQQVF RMFPFGRGLCHAYWAPNFWVFYI+LDK L+ +L K+GF I+APTASFTGGLVGDSSPFAVLP VTPL T +LV+LA+ PCL KAWKNPQP+MITRWVAYAY CGFLFGWHVHEKASLHFVIPLAIVA+QSM+DA+HY+L+SIVS YSLFPLL++AQEYP+KVLLL LH ILMW+GFSSQ S          R+KK D    K +S   T    F + WIEKSYL GLL+VE+W QFLHP  LG RLPF+PLMMISIYCA GMMYSW+WQL  I++  
Sbjct:    8 KNQITNPSNPIADLAWFFLIATSIKLLLIPTYRSTDFEVHRHWLALTHSLPLSLWYSDETSPWTLDYPPFFAYFERFLSLFPPLFDPTIVHLHNGLNYSSNSLIVFHRLTVIVFDTVLIYGVYRLTRKLGLRERVLIWVLVVWSPGLLIVDHMHFQYNGFLLGLLLLSLSWLEDGKDLMGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGLVKGFGRLVMMGTVVVAVFVAAYGPFVYYGQIQQVFHRMFPFGRGLCHAYWAPNFWVFYILLDKGLAFMLAKLGFSIQAPTASFTGGLVGDSSPFAVLPRVTPLITFVLVMLALFPCLIKAWKNPQPKMITRWVAYAYTCGFLFGWHVHEKASLHFVIPLAIVAIQSMEDARHYFLLSIVSCYSLFPLLFQAQEYPIKVLLLLLHAILMWFGFSSQFSSISAVKARVPRQKKGDKSGWKGSSNIVTQNGGFIIGWIEKSYLLGLLVVEIWGQFLHPIVLGNRLPFVPLMMISIYCALGMMYSWIWQLRQIIRKR 534
[Close]
BLAST of XM_017360009.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZE87 (Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBase:RU363110} (2.4.1.- {ECO:0000256|RuleBase:RU363110}))

HSP 1 Score: 748.043 bits (1930), Expect = 0.000e+0
Identity = 386/528 (73.11%), Postives = 439/528 (83.14%), Query Frame = 0
 
Query:    5 PPTTSTS--KNIKDLIFITLLAFFFKILLIPSYHSTDFEVHRHWLALTHSLPLSHWYLDETSPWTLDYPPFFAHFEHFLSFFANLVDPIIVDLHKGLNFDGPSVIVFQRLSVIVSESVLIYGVYLLGRKCGFRERVLMWVLVVWSPGLVIVDHVHFQYNGFLLGILLVSLAALEDRNDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGVFKGFGRLVMMGTVVAAVFVVAYGPFVYYGQIQQVFSRMFPFGRGLCHAYWAPNFWVFYIILDKVLSVLLVKMGFDIKAPTASFTGGLVGDSSPFAVLPTVTPLATLILVLLAMSPCLYKAWKNPQPRMITRWVAYAYFCGFLFGWHVHEKASLHFVIPLAIVAVQSMDDAKHYYLMSIVSSYSLFPLLYEAQEYPLKVLLLTLHVILMWYGFSSQLSKTVVSNTSAQRKKKDDNYDLKKNSGTNPRK--FTLNWIEKSYLSGLLLVEVWSQFLHPAFLGIRLPFLPLMMISIYCAFGMMYSWMWQLHWIVKSH 528
            P TT TS    I +L +  L+    K+LL P+YHSTDFEVHRHWLALT +LPLS WY D TSPWTLDYPPFFAHFE FLS FA LVDP IVDLHKGLN+  PSVI+FQR+SVIVS++ L+YGVY L R    R+R+L+ VLVVWSPGL+IVDHVHFQYNGFLLGILL+SL+ LE+  DL+GGF+FAVLLCFKHLFAVAAPVYFVYL RHYCRGG  +GFGRLVMMG VVA VF  AYGPFVY+GQI QV  RMFPFGRGLCHAYWAPNFWVFYII DKVL+ LL K+GF+I+APTASFTGGLVGDSSPFAVLP +TPL T ++VLLA+SPCL KAW++PQPRMITRWVAYAY CGFLFGWHVHEKASLHFVIPLAIVA++SM+DA+HY+L+SIVS YSLFPLL+EAQEYP+KVLLL LH ILMW+GFSSQ  KT  +  SA  +K+ D      +S T  +K  F + WIEKSYL GLL+VE W QFLHP  LG R PFLPLM+ISIYCA GMMYSW+WQL WI++S 
Sbjct:    9 PITTHTSPYNPITELTWFALVVACVKLLLAPAYHSTDFEVHRHWLALTRTLPLSQWYSDNTSPWTLDYPPFFAHFERFLSLFARLVDPTIVDLHKGLNYSSPSVIIFQRISVIVSDTALMYGVYRLTRNLESRKRILICVLVVWSPGLLIVDHVHFQYNGFLLGILLLSLSFLEEGKDLMGGFLFAVLLCFKHLFAVAAPVYFVYLFRHYCRGGFVRGFGRLVMMGVVVAVVFAAAYGPFVYHGQIHQVLRRMFPFGRGLCHAYWAPNFWVFYIIFDKVLAFLLAKLGFNIQAPTASFTGGLVGDSSPFAVLPQITPLITFMMVLLAISPCLIKAWRDPQPRMITRWVAYAYTCGFLFGWHVHEKASLHFVIPLAIVALRSMEDARHYFLLSIVSCYSLFPLLFEAQEYPIKVLLLLLHSILMWFGFSSQF-KTTAAKASAPGQKRGDKVGKNWSSSTVAKKGGFVVRWIEKSYLLGLLVVETWGQFLHPILLGNRFPFLPLMIISIYCALGMMYSWIWQLRWIIRSR 535
[Close]
BLAST of XM_017360009.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XS63 (Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBase:RU363110} (2.4.1.- {ECO:0000256|RuleBase:RU363110}))

HSP 1 Score: 736.102 bits (1899), Expect = 0.000e+0
Identity = 358/515 (69.51%), Postives = 426/515 (82.72%), Query Frame = 0
 
Query:   14 IKDLIFITLLAFFFKILLIPSYHSTDFEVHRHWLALTHSLPLSHWYLDETSPWTLDYPPFFAHFEHFLSFFANLVDPIIVDLHKGLNFDGPSVIVFQRLSVIVSESVLIYGVYLLGRKCGFRERVLMWVLVVWSPGLVIVDHVHFQYNGFLLGILLVSLAALEDRNDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGVFKGFGRLVMMGTVVAAVFVVAYGPFVYYGQIQQVFSRMFPFGRGLCHAYWAPNFWVFYIILDKVLSVLLVKMGFDIKAPTASFTGGLVGDSSPFAVLPTVTPLATLILVLLAMSPCLYKAWKNPQPRMITRWVAYAYFCGFLFGWHVHEKASLHFVIPLAIVAVQSMDDAKHYYLMSIVSSYSLFPLLYEAQEYPLKVLLLTLHVILMWYGFSSQLSKTVVSNTSAQRKKKDDNYDLKKNSGTNPRKFTLNWIEKSYLSGLLLVEVWSQFLHPAFLGIRLPFLPLMMISIYCAFGMMYSWMWQLHWIVKSH 528
            IKDL++ +L+  FFK+LLIP+YHSTDFEVHR+WLALTH+LPLSHWY+DETSPWTLDYPPFFA+FE FLS FA+LVDP I DL+ GLN+   SVI+FQRLSVI S+++LIY +Y L +    ++R L+WVLVVWSPGL+IVDHVHFQYNGFLLGILLVSL AL+  NDL+GGFVFA+LLCFKHLFAVA PVYFVYLLRHYCRGG+ +GF +LV MG VV AVFV AYGPF Y+GQIQ+V  RMFPFGRGLCHAYWAPNFWV YI+ DK+L+ +L K+GF I+ PTASFTGGLVGD+SPFA+LPT+TP  T  +VLLA+SP L KAW+NPQP+MI RWVAYAY CGFLFGWHVHEKASLHF++PLA+VAV+S++DA+HY+++SIVSSYSLFPLLYEAQEYP+KV+LL LH+ LMWYGFSSQ S+    N S +R              T        W+EKSYL G +++E+W QFLHP  LG +LPFLPLMM+S YCA GMMYSW+WQL  IV+S 
Sbjct:   27 IKDLLWFSLITTFFKVLLIPAYHSTDFEVHRNWLALTHTLPLSHWYVDETSPWTLDYPPFFAYFERFLSLFASLVDPTITDLYNGLNYKALSVIIFQRLSVIASDAILIYSIYKLTKNLESKKRFLIWVLVVWSPGLLIVDHVHFQYNGFLLGILLVSLGALQKGNDLIGGFVFAILLCFKHLFAVAGPVYFVYLLRHYCRGGILRGFTKLVTMGVVVVAVFVAAYGPFAYHGQIQEVLRRMFPFGRGLCHAYWAPNFWVLYILSDKMLAFVLAKLGFHIQTPTASFTGGLVGDASPFAILPTITPSLTFAIVLLAISPSLVKAWRNPQPKMIIRWVAYAYSCGFLFGWHVHEKASLHFLVPLAVVAVESIEDARHYFMLSIVSSYSLFPLLYEAQEYPIKVVLLLLHIALMWYGFSSQFSE---RNESDKR--------------TACVLMVTGWMEKSYLLGFVVLEIWGQFLHPFLLGDKLPFLPLMMMSFYCALGMMYSWIWQLRCIVRSQ 524
[Close]
BLAST of XM_017360009.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B8V5 (Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBase:RU363110} (2.4.1.- {ECO:0000256|RuleBase:RU363110}))

HSP 1 Score: 734.561 bits (1895), Expect = 0.000e+0
Identity = 380/523 (72.66%), Postives = 433/523 (82.79%), Query Frame = 0
 
Query:    8 TSTSKNIKDLIFITLLAFFFKILLIPSYHSTDFEVHRHWLALTHSLPLSHWYLDETSPWTLDYPPFFAHFEHFLSFFANLVDPIIVDLHKGLNFDGPSVIVFQRLSVIVSESVLIYGVYLLGRKCGFRERVLMWVLVVWSPGLVIVDHVHFQYNGFLLGILLVSLAALEDRNDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGVFKGFGRLVMMGTVVAAVFVVAYGPFVYYGQIQQVFSRMFPFGRGLCHAYWAPNFWVFYIILDKVLSVLLVKMGFDIKAPTASFTGGLVGDSSPFAVLPTVTPLATLILVLLAMSPCLYKAWKNPQPRMITRWVAYAYFCGFLFGWHVHEKASLHFVIPLAIVAVQSMDDAKHYYLMSIVSSYSLFPLLYEAQEYPLKVLLLTLHVILMWYGFSSQLSKTVVSNTSAQRKKKDDNYDLKKNSGTNPRK--FTLNWIEKSYLSGLLLVEVWSQFLHPAFLGIRLPFLPLMMISIYCAFGMMYSWMWQLHWIVKSH 528
            TS    I +L +  L+A   K+LL  +Y STDFEVHRHWLALTH+LPLS WY DETSPWTLDYPPFFAHFE FLS FA LVDP IVDLHKGLN+  PSVI+FQR+SVIVS++ L+ GVY L R    ++R+L+WVLVVWSPGL+IVDHVHFQYNGFLLGILL+SL+ LE+  DL+GGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGG  +G  RLVMMG VVA VF  AYGPFVY+GQI QVF RMFPFGRGLCHAYWAPNFWVFYII DK L+ LL K+GF+I+APTASFTGGLVGDSSPFAVLP + P  T ++VLLA+SPCL KAW++PQP+MITRWVAYAY CGFLFGWHVHEKASLHFVIPLAIVAVQSM+DA+HY+L+SIVS YSLFPLL+EAQEYP+KVLLL LH IL  +GFSSQ  K   +  +A  +K+ D   LK +S T  +K  F + WI KSYL GL++VE W QFLHP  LG RLPFLPLMMISIYCA GMMYSW+ QL WI++SH
Sbjct:   16 TSPHNPISELTWFALVAACVKLLLTSTYRSTDFEVHRHWLALTHTLPLSQWYSDETSPWTLDYPPFFAHFERFLSLFARLVDPTIVDLHKGLNYSSPSVILFQRISVIVSDTALMCGVYRLTRNLESKKRILIWVLVVWSPGLLIVDHVHFQYNGFLLGILLISLSFLEEGKDLMGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGFVRGLWRLVMMGAVVAVVFAAAYGPFVYHGQIHQVFRRMFPFGRGLCHAYWAPNFWVFYIIFDKGLAFLLAKLGFNIQAPTASFTGGLVGDSSPFAVLPRIAPSITFMMVLLAISPCLIKAWRDPQPKMITRWVAYAYTCGFLFGWHVHEKASLHFVIPLAIVAVQSMEDARHYFLLSIVSCYSLFPLLFEAQEYPIKVLLLLLHSILTCFGFSSQFFKITAAKANAPGQKRGDKLGLKGSSSTVAKKGGFVVGWIGKSYLLGLVVVETWGQFLHPILLGNRLPFLPLMMISIYCALGMMYSWILQLRWIIRSH 538
[Close]
BLAST of XM_017360009.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7VKH7 (Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBase:RU363110} (2.4.1.- {ECO:0000256|RuleBase:RU363110}))

HSP 1 Score: 734.176 bits (1894), Expect = 0.000e+0
Identity = 361/523 (69.02%), Postives = 432/523 (82.60%), Query Frame = 0
 
Query:    6 PTTSTSKNIKDLIFITLLAFFFKILLIPSYHSTDFEVHRHWLALTHSLPLSHWYLDETSPWTLDYPPFFAHFEHFLSFFANLVDPIIVDLHKGLNFDGPSVIVFQRLSVIVSESVLIYGVYLLGRKCGFRERVLMWVLVVWSPGLVIVDHVHFQYNGFLLGILLVSLAALEDRNDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGVFKGFGRLVMMGTVVAAVFVVAYGPFVYYGQIQQVFSRMFPFGRGLCHAYWAPNFWVFYIILDKVLSVLLVKMGFDIKAPTASFTGGLVGDSSPFAVLPTVTPLATLILVLLAMSPCLYKAWKNPQPRMITRWVAYAYFCGFLFGWHVHEKASLHFVIPLAIVAVQSMDDAKHYYLMSIVSSYSLFPLLYEAQEYPLKVLLLTLHVILMWYGFSSQLSKTVVSNTSAQRKKKDDNYDLKKNSGTNPRKFTLNWIEKSYLSGLLLVEVWSQFLHPAFLGIRLPFLPLMMISIYCAFGMMYSWMWQLHWIVKSH 528
            P    +K I +++ ++L+A   K+LLIP+YHSTDFEVHR+WLA+THSLPLS WY D+TSPWTLDYPPFFAHFEHFLSFFA+LVDPI+V LH GLN+     I FQ+L+VI+S+ VL++G+Y L R  G++ERVL+WVLV++SPGL+IVDH+HFQYNGFLLG+LL+S++ALE+  DLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGG  +GFGRLV+MG+ V AVF  AYGPF+Y+GQIQQVF RMFPFGRGLCHAYWAPNFWVFYIILDKVL+ LLVKMGF+++AP ASFTGGLVGDSSPFAVLP VTP+ T   VLLA++PCL KAW+ PQPRMITRW+AYAY CGF+FGWHVHEKASLHFVIPLAI+A++S++DAKHY+ +SIVS YSLFPLL+EAQEYP+KVLLL LH  LMW GFSS  + T      +++K+ D              +F + W  K YL GLL VE++ Q +HP     RLPFLPLM+ISIYCAFGMMYSW+WQL  I+K H
Sbjct:   44 PKPKANKPITEILRVSLVATCIKLLLIPAYHSTDFEVHRNWLAITHSLPLSQWYSDQTSPWTLDYPPFFAHFEHFLSFFASLVDPIMVHLHHGLNYKSLPTIYFQKLTVIISDFVLVFGIYRLTRNLGYKERVLIWVLVIFSPGLMIVDHLHFQYNGFLLGLLLISISALEEGKDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGFIRGFGRLVLMGSAVVAVFAAAYGPFLYHGQIQQVFHRMFPFGRGLCHAYWAPNFWVFYIILDKVLAFLLVKMGFNVQAPAASFTGGLVGDSSPFAVLPRVTPMITFGFVLLAIAPCLIKAWREPQPRMITRWIAYAYTCGFMFGWHVHEKASLHFVIPLAIIALKSVEDAKHYFYLSIVSCYSLFPLLFEAQEYPIKVLLLLLHASLMWIGFSSHFATTARKTAESEQKRYDKT------------RFVIGWFGKLYLVGLLAVEIYGQLVHPILFTERLPFLPLMLISIYCAFGMMYSWIWQLRQIIKLH 554
[Close]
BLAST of XM_017360009.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4B9N1 (Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBase:RU363110} (2.4.1.- {ECO:0000256|RuleBase:RU363110}))

HSP 1 Score: 734.176 bits (1894), Expect = 0.000e+0
Identity = 361/523 (69.02%), Postives = 432/523 (82.60%), Query Frame = 0
 
Query:    6 PTTSTSKNIKDLIFITLLAFFFKILLIPSYHSTDFEVHRHWLALTHSLPLSHWYLDETSPWTLDYPPFFAHFEHFLSFFANLVDPIIVDLHKGLNFDGPSVIVFQRLSVIVSESVLIYGVYLLGRKCGFRERVLMWVLVVWSPGLVIVDHVHFQYNGFLLGILLVSLAALEDRNDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGVFKGFGRLVMMGTVVAAVFVVAYGPFVYYGQIQQVFSRMFPFGRGLCHAYWAPNFWVFYIILDKVLSVLLVKMGFDIKAPTASFTGGLVGDSSPFAVLPTVTPLATLILVLLAMSPCLYKAWKNPQPRMITRWVAYAYFCGFLFGWHVHEKASLHFVIPLAIVAVQSMDDAKHYYLMSIVSSYSLFPLLYEAQEYPLKVLLLTLHVILMWYGFSSQLSKTVVSNTSAQRKKKDDNYDLKKNSGTNPRKFTLNWIEKSYLSGLLLVEVWSQFLHPAFLGIRLPFLPLMMISIYCAFGMMYSWMWQLHWIVKSH 528
            P    +K I +++ ++L+A   K+LLIP+YHSTDFEVHR+WLA+THSLPLS WY D+TSPWTLDYPPFFAHFEHFLSFFA+LVDPI+V LH GLN+     I FQ+L+VI+S+ VL++G+Y L R  G++ERVL+WVLV++SPGL+IVDH+HFQYNGFLLG+LL+S++ALE+  DLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGG  +GFGRLV+MG+ V AVF  AYGPF+Y+GQIQQVF RMFPFGRGLCHAYWAPNFWVFYIILDKVL+ LLVKMGF+++AP ASFTGGLVGDSSPFAVLP VTP+ T   VLLA++PCL KAW+ PQPRMITRW+AYAY CGF+FGWHVHEKASLHFVIPLAI+A++S++DAKHY+ +SIVS YSLFPLL+EAQEYP+KVLLL LH  LMW GFSS  + T      +++K+ D              +F + W  K YL GLL VE++ Q +HP     RLPFLPLM+ISIYCAFGMMYSW+WQL  I+K H
Sbjct:   44 PKPKANKPITEILRVSLVATCIKLLLIPAYHSTDFEVHRNWLAITHSLPLSQWYSDQTSPWTLDYPPFFAHFEHFLSFFASLVDPIMVHLHHGLNYKSLPTIYFQKLTVIISDFVLVFGIYRLTRNLGYKERVLIWVLVIFSPGLMIVDHLHFQYNGFLLGLLLISISALEEGKDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGFIRGFGRLVLMGSAVVAVFAAAYGPFLYHGQIQQVFHRMFPFGRGLCHAYWAPNFWVFYIILDKVLAFLLVKMGFNVQAPAASFTGGLVGDSSPFAVLPRVTPMITFGFVLLAIAPCLIKAWREPQPRMITRWIAYAYTCGFMFGWHVHEKASLHFVIPLAIIALKSVEDAKHYFYLSIVSCYSLFPLLFEAQEYPIKVLLLLLHASLMWIGFSSHFATTARKTAESEQKRYDKT------------RFVIGWFGKLYLVGLLAVEIYGQLVHPILFTERLPFLPLMLISIYCAFGMMYSWIWQLRQIIKLH 554
[Close]
BLAST of XM_017360009.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2BQS0 (Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBase:RU363110} (2.4.1.- {ECO:0000256|RuleBase:RU363110}))

HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 364/526 (69.20%), Postives = 439/526 (83.46%), Query Frame = 0
 
Query:    3 TKPPTTSTSKNIKDLIFITLLAFFFKILLIPSYHSTDFEVHRHWLALTHSLPLSHWYLDETSPWTLDYPPFFAHFEHFLSFFANLVDPIIVDLHKGLNFDGPSVIVFQRLSVIVSESVLIYGVYLLGRKCGFRERVLMWVLVVWSPGLVIVDHVHFQYNGFLLGILLVSLAALEDRNDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGVFKGFGRLVMMGTVVAAVFVVAYGPFVYYGQIQQVFSRMFPFGRGLCHAYWAPNFWVFYIILDKVLSVLLVKMGFDIKAPTASFTGGLVGDSSPFAVLPTVTPLATLILVLLAMSPCLYKAWKNPQPRMITRWVAYAYFCGFLFGWHVHEKASLHFVIPLAIVAVQSMDDAKHYYLMSIVSSYSLFPLLYEAQEYPLKVLLLTLHVILMWYGFSSQLSKTVVSNTSAQRKKKDDNYDLKKNSGTNPRKFTLNWIEKSYLSGLLLVEVWSQFLHPAFLGIRLPFLPLMMISIYCAFGMMYSWMWQLHWIVKSH 528
            T  P +  ++ I ++++++L+A   K LLIP+YHSTDFEVHR+WLA++HSLPLS WY DETSPWTLDYPPFFAHFEHFLSFFA+LVDPI++ L +GLN+     I+FQRL+VIVS+ VL++G+Y L R  G++ERVL+WVLV++SPGL+IVDH+HFQYNGFLLGILL+SL+ALE+  DLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGG+ +GFG+LV+MG+ V AVF  AYGPF+Y+GQIQQVF RMFPFGRGLCHAYWAPNFWVFYIILDKVL+  LVKMGF ++ PTASFTGGLVGDSSPFAVLP VTP+ T  +VLLA++PCL KAWK+PQPRMITRW+AYAY CGF+FGWHVHEKASLHFVIPLAI++++S++DAKHY+ +SIVS YSLFPLL+EAQEYP+KVLLL LH  LMW GFSS  + T         +K D++    + +  N  +F + W  K YL GL+ VE++ QF+HP     RLPFLPLMMISIYCAFGMMYSW+WQL  IVK H
Sbjct:   53 TPIPKSKPNRPITEILWVSLVATCIKFLLIPAYHSTDFEVHRNWLAISHSLPLSQWYSDETSPWTLDYPPFFAHFEHFLSFFASLVDPIMIHLQQGLNYKSQPTILFQRLTVIVSDFVLVFGIYRLTRNLGYKERVLIWVLVIFSPGLMIVDHLHFQYNGFLLGILLISLSALEEGKDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGLIRGFGKLVIMGSAVVAVFAAAYGPFLYHGQIQQVFHRMFPFGRGLCHAYWAPNFWVFYIILDKVLAFSLVKMGFSVQTPTASFTGGLVGDSSPFAVLPRVTPMVTFSIVLLAIAPCLIKAWKDPQPRMITRWIAYAYTCGFMFGWHVHEKASLHFVIPLAIISLKSVEDAKHYFYLSIVSCYSLFPLLFEAQEYPIKVLLLLLHATLMWIGFSSHFTTT--------NRKADES----EQTRYNKTRFIVGWFGKLYLLGLVAVEIYGQFVHPIIFAERLPFLPLMMISIYCAFGMMYSWIWQLRQIVKCH 566
[Close]
BLAST of XM_017360009.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4AFG0 (Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBase:RU363110} (2.4.1.- {ECO:0000256|RuleBase:RU363110}))

HSP 1 Score: 728.783 bits (1880), Expect = 0.000e+0
Identity = 354/523 (67.69%), Postives = 430/523 (82.22%), Query Frame = 0
 
Query:    6 PTTSTSKNIKDLIFITLLAFFFKILLIPSYHSTDFEVHRHWLALTHSLPLSHWYLDETSPWTLDYPPFFAHFEHFLSFFANLVDPIIVDLHKGLNFDGPSVIVFQRLSVIVSESVLIYGVYLLGRKCGFRERVLMWVLVVWSPGLVIVDHVHFQYNGFLLGILLVSLAALEDRNDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGVFKGFGRLVMMGTVVAAVFVVAYGPFVYYGQIQQVFSRMFPFGRGLCHAYWAPNFWVFYIILDKVLSVLLVKMGFDIKAPTASFTGGLVGDSSPFAVLPTVTPLATLILVLLAMSPCLYKAWKNPQPRMITRWVAYAYFCGFLFGWHVHEKASLHFVIPLAIVAVQSMDDAKHYYLMSIVSSYSLFPLLYEAQEYPLKVLLLTLHVILMWYGFSSQLSKTVVSNTSAQRKKKDDNYDLKKNSGTNPRKFTLNWIEKSYLSGLLLVEVWSQFLHPAFLGIRLPFLPLMMISIYCAFGMMYSWMWQLHWIVKSH 528
            P   ++K I ++++++L+A   K+LLIP+YHSTDFEVHR+WLA+THSLPLS WY D+TSPWTLDYPPFFAHFEHFLSFFA+LVDPI+V LH GLN+     I FQRL+VI+S+ VL++G+Y L R  G++ERVL+WVLV++SPGL+IVDH+HFQYNGFLLG+LL+S++ALE+  DLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGG  +GFGRLV+MG+ V AVF  AYGPF+Y+GQIQQVF RMFPFGRGLCHAYWAPNFWVFYIILDKVL+  +VKMGF ++APTASFTGGLVGDSSPFAVLP VTP+ T  +V+L ++PCL KAW++PQ RMITRW+AYAY CGF+FGWHVHEKASLHFVIPLAI+A++S++DAKHY+ +SIVS YSLFPLL+EAQEYP+K LLL LH  LMW GFSS  + T      +++ + +              +F +    K YL GLL VE++ Q +HP     RLPFLPLM+ISIYCAFGMMYSW+WQL  I+K H
Sbjct:   19 PKPKSNKPITEILWVSLVATCIKLLLIPAYHSTDFEVHRNWLAITHSLPLSQWYSDQTSPWTLDYPPFFAHFEHFLSFFASLVDPIMVHLHLGLNYKSQPTIYFQRLTVILSDFVLVFGIYRLTRNLGYKERVLIWVLVIFSPGLMIVDHLHFQYNGFLLGMLLISISALEEGKDLLGGFVFAVLLCFKHLFAVAAPVYFVYLLRHYCRGGFIRGFGRLVIMGSAVVAVFAAAYGPFLYHGQIQQVFHRMFPFGRGLCHAYWAPNFWVFYIILDKVLAFSVVKMGFSVQAPTASFTGGLVGDSSPFAVLPRVTPMITFSIVMLTIAPCLIKAWRDPQRRMITRWIAYAYTCGFMFGWHVHEKASLHFVIPLAIIALKSVEDAKHYFYLSIVSCYSLFPLLFEAQEYPIKFLLLLLHASLMWIGFSSHFATTTRKAVESEQTRYEKT------------RFVIGRFGKLYLLGLLAVEIYGQLVHPILFTERLPFLPLMLISIYCAFGMMYSWIWQLRQIIKLH 529
Match NameStatsDescription
A0A2R6RCW6E-Value: 0.000e+0, PID: 73.67Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBas... [more]
A0A1J6KSV8E-Value: 0.000e+0, PID: 69.02Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBas... [more]
A0A7J7H3S9E-Value: 0.000e+0, PID: 74.38Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBas... [more]
A0A5J4ZE87E-Value: 0.000e+0, PID: 73.11Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBas... [more]
A0A103XS63E-Value: 0.000e+0, PID: 69.51Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBas... [more]
A0A5B7B8V5E-Value: 0.000e+0, PID: 72.66Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBas... [more]
A0A1U7VKH7E-Value: 0.000e+0, PID: 69.02Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBas... [more]
A0A1S4B9N1E-Value: 0.000e+0, PID: 69.02Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBas... [more]
A0A6N2BQS0E-Value: 0.000e+0, PID: 69.20Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBas... [more]
A0A1S4AFG0E-Value: 0.000e+0, PID: 67.69Alpha-1,3-glucosyltransferase {ECO:0000256|RuleBas... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.