Resource Type:
Polypeptide
Name:
XM_017364282.1
Identifier:
XM_017364282.1-protein
Sequence:
MRHLNFFNMVTKRNLSLLLLQHLVLIIAVQVSGDHYHHIHHHSLENDRAA
LLAFKRTISYGPNSTLENWNETTRVCSFGGVYCNQKQQVVTKLILLGTEL
VGLLSPFISNLTGLRGLILTGNNLVGTIPASLFSNCNSLHNIDLSENSLT
GLIPLFGNCSNLWNLNLYNNRFTGEIPLSLTKASFMYNLDLENNLLSGEL
PVQLIANLTKLKNLHLSYNNMVSHDHNTNLYPFFFALANCSVLKELELAG
IGLGGILPGSVGQLSVKLKYMLLGENQIAGSIPLALGNLSALTTLNLSNN
LLNGTLPAELSQLRSLEQLILSNNYLTGEIPATLGLYSKLGLLDLSWNKF
FGAIPEGLGNLIQIRYMFLNNNLLSGEIPKALGRCTDLDKLDLSYNMLTG
SIPPDVKGMREIRMYLNLSHNQLQGSLPLELSKLQNVQEIDLSSNNLTGS
IFVQISNCIALRMLNFSNNFLVGQLPQSLGDLKNLEVFDVSTNGLSGNIP
VSLSNIHNLIFLNLSTNDFSGTIPSGGIFETTTYLSFLGNQRLCGSVPGI
AMCHQKRHYFRSPVFLSIFCIIISISAFFSTICFVIGYKCIRGASSAANF
EAERMSEPGTVPSFPRITYKQLSEATGGFDEQRIIGSGSYGRVYKGVLSE
GTPIAIKVLQFQTGNSTKSFTRECQVLKRIRHRNLIRIITTCSLPDFKAL
VLPYMENGSLDSYLYPQLGMNFRSDSSDLSLIQIVNICSDIAEGMAYLHH
HSPVRVIHCDLKPSNVLLNDDLTALISDFGIARLVLAVGGGNAGVTENMG
NSTANMLSGTIGYIAPEYAFGSNTSTQGDVYSFGILILEMVTRKRPTDVM
FVGGLSLRKWVKSYYHQNTENVIYSSLLRALHDLSPEVKSMWEVVIRKLL
ELGILCTQYSALTRPTMLDVADDLDRLKRYLSGDTTATFASSLSISSSTT
GDD
Sequence Length:
953
Sequence Checksum:
e74ad62750f2db20e01e2a92cc0f488b
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364282.1, derives from mRNA, XM_017364282.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364282.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364282.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BH72 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1237.25 bits (3200), Expect = 0.000e+0
Identity = 644/994 (64.79%), Postives = 751/994 (75.55%), Query Frame = 0
Match: A0A5J5BH72 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1237.25 bits (3200), Expect = 0.000e+0
Identity = 644/994 (64.79%), Postives = 751/994 (75.55%), Query Frame = 0
Query: 9 MVTKRNLSLLLLQHLVLIIAVQVSGDHYHHIHHHSLENDRAALLAFKRTISYGPNSTLENWNETTRVCSFGGVYCNQKQQVVTKLILLGTELVGLLSPFISNLTGLRG------------------------------------------------LILTGNNLVGTIPASLFSNCNSLHNIDLSENSLTGLIPL-FGNCSNLWNLNLYNNRFTGEIPLSLTKASFMYNLDLENNLLSGELPVQLIANLTKLKNLHLSYNNMVSHDHNTNLYPFFFALANCSVLKELELAGIGLGGILPGSVGQLSVKLKYMLLGENQIAGSIPLALGNLSALTTLNLSNNLLNGTLPAELSQLRSLEQLILSNNYLTGEIPATLGLYSKLGLLDLSWNKFFGAIPEGLGNLIQIRYMFLNNNLLSGEIPKALGRCTDLDKLDLSYNMLTGSIPPDVKGMREIRMYLNLSHNQLQGSLPLELSKLQNVQEIDLSSNNLTGSIFVQISNCIALRMLNFSNNFLVGQLPQSLGDLKNLEVFDVSTNGLSGNIPVSLSNIHNLIFLNLSTNDFSGTIPSGGIFETTTYLSFLGNQRLCGSVPGIAMCHQKRHYFRSPVFLSIFCIIISISAFFSTICFVIGYKCIRGASSAANFEAERMSEPGTVPSFPRITYKQLSEATGGFDEQRIIGSGSYGRVYKGVLSEGTPIAIKVLQFQTGNSTKSFTRECQVLKRIRHRNLIRIITTCSLPDFKALVLPYMENGSLDSYLYPQLGMNFRSDSSDLSLIQIVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDLTALISDFGIARLVLAVGGGNAGVTENMGNSTANMLSGTIGYIAPEYAFGSNTSTQGDVYSFGILILEMVTRKRPTDVMFVGGLSLRKWVKSYYHQNTENVIYSSLLRALHDLSPEVKSMWEVVIRKLLELGILCTQYSALTRPTMLDVADDLDRLKRYLSGDTTATFASSLSISSSTTGDD 953
MV KR + L LLQHLV+I +SG +HH H+SL+ D+ ALLAFKRTIS P STL NWN T VC+F GV CN+++ VT+LIL LVGLLSPFISNLT LR L +TGNNL GTIP S FSNC L N+DLS N+ +G IP GNC LWNLNLYNN+FTGEIP+SL+ AS M+NLDLE N LSGELP +++ +K++ HLSYNNM SHD NT+L PFF ALANCS L EL+LAG+GLGG LP S+G+L V + L EN I+GSIP LGNL+ LT LNL++NLLNG++PA++ L +LE+L LS+N+ TGEIP +G LGLLDLS N+ G IP+ LGN I++ Y+FLNNNLLSG IP +L RCTD+ LDLSYN LTGSIPPD+ +REIR++LNLSHN L+G LPLE+SKL+NVQE+DLS NNL GSIF+QISNCIALR++N S N L G+LP++LG KNLE FDVS N LSG +P+SL+N+ L FLNLS N+F GTIPSGGIF + TYLSFL N+ LCGSVPG+ CH+K YF SPVF+ +F I+I +S FFSTIC VIG + ++ S+ E E S P + +FPRITYK+LSEAT GFD QR++GSGSYG VYKGVL +GT +A+KVL QTGNSTKSF RECQVLKRIRHRNLIRIIT CSLPDFKALVLPYM NGSLDS LYP G + S SSDLSLIQ VNICSD+AEGMAYLHHHSP RVIHCDLKPSNVLLNDD+TAL+SDFGIARLV+ G GNAGV ENMGNSTANMLSG+IGYIAPEY FGSNTST+GDVYSFGIL+LE+VTRKRPTD MFV GLSL KWVKS+YH E ++ SSL+RAL D SPE K MWEV I +L+ELGILCTQ + TRPTMLD ADDLDRLKRYL GDTTATFASSL ISSST GDD
Sbjct: 1 MVFKRTMCLFLLQHLVIISVQALSG--HHHPPHYSLDTDKTALLAFKRTISSDPLSTLANWNVTNDVCNFTGVRCNKQRHRVTQLILNSAGLVGLLSPFISNLTRLRHLEIVDNDLFGIIPPEFSSLRHIIHFQLDWNNLHGPIPDSFSLLSNLALLTVTGNNLNGTIPPSFFSNCTLLTNVDLSSNAFSGTIPPEVGNCRGLWNLNLYNNQFTGEIPMSLSNASDMFNLDLEYNHLSGELPSEVVVKFSKVQYFHLSYNNMSSHDGNTDLDPFFTALANCSSLMELQLAGMGLGGRLPTSIGRLGVNFSILFLEENMISGSIPPNLGNLTKLTWLNLTSNLLNGSIPADIGGLLNLERLSLSHNFFTGEIPEAMGQLPHLGLLDLSNNRLSGEIPKSLGNFIRLNYLFLNNNLLSGSIPPSLCRCTDISSLDLSYNRLTGSIPPDISSLREIRIFLNLSHNFLEGPLPLEISKLENVQEMDLSWNNLNGSIFLQISNCIALRVINLSYNSLRGRLPETLGKFKNLEAFDVSGNQLSGPVPISLNNVPTLTFLNLSFNNFGGTIPSGGIFNSVTYLSFLHNKDLCGSVPGVPPCHRKGRYFHSPVFVIVFSIVIFVSVFFSTICCVIGCRRLKEMISSGKAEREGKSPPELIHNFPRITYKELSEATDGFDRQRLLGSGSYGHVYKGVLPDGTHVAVKVLHMQTGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMVNGSLDSRLYPHSGTSLASGSSDLSLIQRVNICSDVAEGMAYLHHHSPTRVIHCDLKPSNVLLNDDMTALVSDFGIARLVMTAGVGNAGVVENMGNSTANMLSGSIGYIAPEYGFGSNTSTRGDVYSFGILVLEIVTRKRPTDDMFVEGLSLHKWVKSHYHGRMEKLVDSSLVRALRDQSPEAKKMWEVAIGELIELGILCTQEAPSTRPTMLDAADDLDRLKRYLDGDTTATFASSLGISSSTLGDD 992
BLAST of XM_017364282.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PSJ0 ((Leucine-rich repeat receptor-like serine/threonine-protein kinase {ECO:0000313|EMBL:PSR95999.1}))
HSP 1 Score: 1236.86 bits (3199), Expect = 0.000e+0
Identity = 642/1000 (64.20%), Postives = 750/1000 (75.00%), Query Frame = 0
Match: A0A2R6PSJ0 ((Leucine-rich repeat receptor-like serine/threonine-protein kinase {ECO:0000313|EMBL:PSR95999.1}))
HSP 1 Score: 1236.86 bits (3199), Expect = 0.000e+0
Identity = 642/1000 (64.20%), Postives = 750/1000 (75.00%), Query Frame = 0
Query: 5 NFFNMVTKRNLSLLLLQHLVLIIAVQVSG-DHYHHIHHHSLENDRAALLAFKRTISYGPNSTLENWNETTRVCSFGGVYCNQKQQVVTKLILLGTELVGLLSPFISNLTGLRGLILTGNNLVGT------------------------------------------------IPASLFSNCNSLHNIDLSENSLTGLIPL-FGNCSNLWNLNLYNNRFTGEIPLSLTKASFMYNLDLENNLLSGELPVQLIANLTKLKNLHLSYNNMVSHDHNTNLYPFFFALANCSVLKELELAGIGLGGILPGSVGQLSVKLKYMLLGENQIAGSIPLALGNLSALTTLNLSNNLLNGTLPAELSQLRSLEQLILSNNYLTGEIPATLGLYSKLGLLDLSWNKFFGAIPEGLGNLIQIRYMFLNNNLLSGEIPKALGRCTDLDKLDLSYNMLTGSIPPDVKGMREIRMYLNLSHNQLQGSLPLELSKLQNVQEIDLSSNNLTGSIFVQISNCIALRMLNFSNNFLVGQLPQSLGDLKNLEVFDVSTNGLSGNIPVSLSNIHNLIFLNLSTNDFSGTIPSGGIFETTTYLSFLGNQRLCGSVPGIAMCHQKRHYFRSPVFLSIFCIIISISAFFSTICFVIGYKCIRGASSAANFEAERMSEPGTVPSFPRITYKQLSEATGGFDEQRIIGSGSYGRVYKGVLSEGTPIAIKVLQFQTGNSTKSFTRECQVLKRIRHRNLIRIITTCSLPDFKALVLPYMENGSLDSYLYPQ-LGMNFRSDSSDLSLIQIVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDLTALISDFGIARLVLAVGGGNAGVTENMGNSTANMLSGTIGYIAPEYAFGSNTSTQGDVYSFGILILEMVTRKRPTDVMFVGGLSLRKWVKSYYHQNTENVIYSSLLRALHDLSPEVKSMWEVVIRKLLELGILCTQYSALTRPTMLDVADDLDRLKRYLSGDTTATFASSLSISSSTTGDD 953
N+ NM KR + L LLQ+LV+ ++ +HH H SLE DRAALL FKRTIS PNS+L NWN TT VC F GV CN++ VT++++ LVGLLSP I+NLT LR L L N L GT IPASLFSNC L N+DLS N L G IP GNC LWNLNLYNN+FTGEIP S+T AS MYNLD+E N LSGELP +++ NL + + LHLSY+ MV +NL PFF AL NC+ L+ELELAG+ L G LP S+GQL L ++L EN+I GSIP +L N+++L LNL++NLL+GT+P +SQL LEQL LS+N+L G+IPA LG + LGLLDLS N+F G IP+ LGNL +I +MFLN+NLLSG IP +LG CTDL KLDLSYN L G+IPP++ G+REIRM+LNLSHN L+G P+ELSKL+NVQE+DLSSNNLTGS+F QISNCIALR++N S+NFL GQLP+SLG+LKNLE FDVS N LSGNIP +L+ + L FLNLS N+FSG IPSGG+F++ T LSFL NQ LCGSV GI CH+K++ FRS FL FCI+ SI IC VIG + ++ SA N E ER S+P + +FPRITYK+LS+ATGGFD+QR++GSGSYG VYKGVL +GTPIA+KVL QTGNSTKSF RECQVLKRIRHRNLIRIIT CSLPDFKALVLPYM NGSLDS LYP S SSDLSLIQ VNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDD+TAL+SDFGIARLV+ V GGNAGV ENMGNSTANMLSG+IGYIAPEY FGSNT+T+GDVYSFGIL+LEMVTRKRPTD MFVG LSL +WVKS+YH E VI SS++RA+ D SPEVK MWEV I +L+ELG+LCTQ S TRPTMLD ADDLDRLKRYL+GD+TATFASSL ISSST GDD
Sbjct: 26 NYSNMAFKRTVFLYLLQYLVITSGRSLTAHQQHHHRSHDSLETDRAALLEFKRTISSDPNSSLVNWNRTTHVCKFSGVRCNKQHHRVTQIVIHDAGLVGLLSPVIANLTRLRVLDLVNNRLFGTIPWELSSLRHLRRVWLEGNHLQGQIPDSFSLLASLLVVNLRANELTGIIPASLFSNCTFLRNVDLSANFLEGKIPQEIGNCPGLWNLNLYNNKFTGEIPFSITNASSMYNLDVEYNHLSGELPTEIVGNLPEFRYLHLSYSGMVG----SNLDPFFTALGNCTFLEELELAGMKLQGRLPSSIGQLVASLATLMLQENRITGSIPPSLSNITSLVWLNLTSNLLSGTIPEGISQLSLLEQLFLSHNFLNGQIPAALGQFQGLGLLDLSHNRFSGEIPKSLGNLKKINFMFLNHNLLSGAIPASLGYCTDLVKLDLSYNRLNGTIPPEISGLREIRMFLNLSHNHLEGPFPIELSKLENVQEVDLSSNNLTGSVFPQISNCIALRLINISHNFLQGQLPESLGELKNLEAFDVSVNQLSGNIPTNLNKLLTLTFLNLSFNEFSGMIPSGGVFDSLTILSFLDNQGLCGSVSGIPDCHRKKNPFRSHAFLIAFCIVASILMALLIICCVIGCRYLKVIISAGNVETERKSQPELIQNFPRITYKELSDATGGFDQQRLLGSGSYGHVYKGVLPDGTPIAVKVLHLQTGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDSRLYPHSGNGLGSSGSSDLSLIQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDMTALVSDFGIARLVMTVAGGNAGVVENMGNSTANMLSGSIGYIAPEYGFGSNTNTKGDVYSFGILVLEMVTRKRPTDDMFVGALSLHRWVKSHYHGRVERVIDSSMVRAMKDQSPEVKKMWEVAIGELMELGMLCTQDSPNTRPTMLDAADDLDRLKRYLTGDSTATFASSLGISSSTIGDD 1021
BLAST of XM_017364282.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067LBT1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1206.82 bits (3121), Expect = 0.000e+0
Identity = 626/963 (65.01%), Postives = 727/963 (75.49%), Query Frame = 0
Match: A0A067LBT1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1206.82 bits (3121), Expect = 0.000e+0
Identity = 626/963 (65.01%), Postives = 727/963 (75.49%), Query Frame = 0
Query: 47 DRAALLAFKRTISYGPNSTLENWNETTRVCSFGGVYCNQKQQ-VVTKLILLGTELVGLLSPFISNLTGLRGLILTGNN------------------------------------------------LVGTIPASLFSNCNSLHNIDLSENSLTGLIPL-FGNCSNLWNLNLYNNRFTGEIPLSLTKASF-MYNLDLENNLLSGELPVQLIANLTKLKNLHLSYNNMVSHDHNTNLYPFFFALANCSVLKELELAGIGLGGILPGSVGQLSVKLKYMLLGENQIAGSIPLALGNLSALTTLNLSNNLLNGTLPAELSQLRSLEQLILSNNYLTGEIPATLGLYSKLGLLDLSWNKFFGAIPEGLGNLIQIRYMFLNNNLLSGEIPKALGRCTDLDKLDLSYNMLTGSIPPDVKGMREIRMYLNLSHNQLQGSLPLELSKLQNVQEIDLSSNNLTGSIFVQISNCIALRMLNFSNNFLVGQLPQSLGDLKNLEVFDVSTNGLSGNIPVSLSNIHNLIFLNLSTNDFSGTIPSGGIFETTTYLSFLGNQRLCGSVPGIAMCHQKRHYFRSPVFLSIFCIIISISAFFSTICFVIGYKCIRGASSAAN-FEAERMSEPGTVP----SFPRITYKQLSEATGGFDEQRIIGSGSYGRVYKGVLSEGTPIAIKVLQFQTGNSTKSFTRECQVLKRIRHRNLIRIITTCSLPDFKALVLPYMENGSLDSYLYPQLGMNFRSDSSDLSLIQIVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDLTALISDFGIARLVLAVGGGNAGVTENMGNSTANMLSGTIGYIAPEYAFGSNTSTQGDVYSFGILILEMVTRKRPTDVMFVGGLSLRKWVKSYYHQNTENVIYSSLLRALHDLSPEVKSMWEVVIRKLLELGILCTQYSALTRPTMLDVADDLDRLKRYLSGDTTATFASSLSISSSTTGDD 953
D+AALLAF++TI + PNS L NW VC+F GV C+++ V KL L +EL G LSP ISNLTGLR L L NN L G +P +LFSNC SL N+DLS N LTG IP GNC +LW +NLYNN+FTGE+P+SLT S +YN+D+E N LSGELP +I L L LHLSYN+M SH+ NTNL PFF AL NC+ L+ELELAG+GLGG +P S+GQLS + ++L ENQI GSIP +GNLS LT LNL++N LNGT+ A++SQL +LEQL LS+N TG IPA LG + KLGL+DLS N+F G IP LGNL+++ MFLNNN LSG IP LG+C DL KLDLSYN LTGSIPP + G+ EIR++LNLSHN+L+G LP+ELSKL+NVQEID+SSNNLTGSIFVQ+S+CIALRM+NFS+N L G LP SLGDLKNLE FDVS N LSG IPVSL+ I L +LNLS N+F G IPSGG+F++ TY SFL N LCG+VP + C KR +FRS FL IF ++I +SAF S++C IG + + S+ N +ER S+P TVP +FPRITY++LSEAT GFD QR+IG GSYGRVYKG+L +GTPIA+KVLQFQ+GNSTKSF RECQVLKRIRHRNLIRIIT CSLPDFKALVLPYM NGSLDS LYP G S SSDL+LIQ VNICSDIAEGMAYLHHHS V+VIHCDLKPSNVLLNDD+TAL+SDFGIARLVL VGGGNAGV EN+GNSTAN+LSG+IGYIAPEY FGSNTST+GDVYSFG+++LEMVTRKRPTD MF GGL+L +WVKSYYH E VI SSLLRA D SPEV MWEV I +L+ELGILCTQ S TRPTMLDVADDLDRLKRYLSGDTTATFASSL ISSSTTGDD
Sbjct: 40 DKAALLAFRKTIVFDPNSRLANWIGAVEVCNFTGVTCDRRHHHRVVKLNLTSSELTGPLSPIISNLTGLRVLNLIENNFFGIIPPELSSLRHLRHLQLDMNNLQGSLPKSFALLSKLTLITIMDNKLTGELPPTLFSNCTSLGNVDLSYNFLTGKIPQEIGNCPHLWTINLYNNQFTGELPVSLTNISVDLYNIDVEYNHLSGELPANIIGKLQALGFLHLSYNHMYSHNKNTNLEPFFNALGNCTDLEELELAGMGLGGSMPSSIGQLSTTMHSLVLQENQIYGSIPSGIGNLSGLTLLNLTSNYLNGTISAKISQLLNLEQLFLSHNLFTGAIPAALGQFPKLGLIDLSNNQFSGEIPASLGNLVKVNSMFLNNNNLSGTIPPTLGQCIDLYKLDLSYNRLTGSIPPQISGLHEIRIFLNLSHNRLEGPLPIELSKLENVQEIDVSSNNLTGSIFVQMSSCIALRMINFSHNSLEGDLPVSLGDLKNLESFDVSKNHLSGTIPVSLNKIPTLTYLNLSFNNFRGAIPSGGVFDSVTYASFLENLDLCGAVPCMPACAHKRRWFRSQKFLIIFVLVILVSAFLSSVCCAIGIRRFKVIISSRNSVRSERTSKP-TVPELIHNFPRITYRELSEATEGFDGQRLIGIGSYGRVYKGILPDGTPIAVKVLQFQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDSRLYPHSGTGLCSGSSDLTLIQRVNICSDIAEGMAYLHHHSHVKVIHCDLKPSNVLLNDDMTALVSDFGIARLVLTVGGGNAGVVENVGNSTANLLSGSIGYIAPEYGFGSNTSTKGDVYSFGVVVLEMVTRKRPTDDMFAGGLNLHRWVKSYYHGRMEQVIDSSLLRAARDQSPEVTKMWEVAIGELIELGILCTQESPSTRPTMLDVADDLDRLKRYLSGDTTATFASSLGISSSTTGDD 1001
BLAST of XM_017364282.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PUQ7 ((Leucine-rich repeat receptor-like serine/threonine-protein kinase {ECO:0000313|EMBL:PSR96825.1}))
HSP 1 Score: 1202.58 bits (3110), Expect = 0.000e+0
Identity = 634/996 (63.65%), Postives = 743/996 (74.60%), Query Frame = 0
Match: A0A2R6PUQ7 ((Leucine-rich repeat receptor-like serine/threonine-protein kinase {ECO:0000313|EMBL:PSR96825.1}))
HSP 1 Score: 1202.58 bits (3110), Expect = 0.000e+0
Identity = 634/996 (63.65%), Postives = 743/996 (74.60%), Query Frame = 0
Query: 9 MVTKRNLSLLLLQHLVLIIAVQVSGDHYHHIHHHS-LENDRAALLAFKRTISYGPNSTLENWNETTRVCSFGGVYCNQKQQVVTKLILLGTELVGLLSPFISNLTGLRGLILTGNNLVGT------------------------------------------------IPASLFSNCNSLHNIDLSENSLTGLI-PLFGNCSNLWNLNLYNNRFTGEIPLSLTKASFMYNLDLENNLLSGELPVQLIANLTKLKNLHLSYNNMVSHDHNTNLYPFFFALANCSVLKELELAGIGLGGILPGSVGQLSVKLKYMLLGENQIAGSIPLALGNLSALTTLNLSNNLLNGTLPAELSQLRSLEQLILSNNYLTGEIPATLGLYSKLGLLDLSWNKFFGAIPEGLGNLIQIRYMFLNNNLLSGEIPKALGRCTDLDKLDLSYNMLTGSIPPDVKGMREIRMYLNLSHNQLQGSLPLELSKLQNVQEIDLSSNNLTGSIFVQISNCIALRMLNFSNNFLVGQLPQSLGDLKNLEVFDVSTNGLSGNIPVSLSNIHNLIFLNLSTNDFSGTIPSGGIFETTTYLSFLGNQRLCGSVPGIAMCHQKRHYFRSPVFLSIFCIIISISAFFSTICFVIGYKCIRGASSAANFEAERMSEPGTVPSFPRITYKQLSEATGGFDEQRIIGSGSYGRVYKGVLSEGTPIAIKVLQFQTGNSTKSFTRECQVLKRIRHRNLIRIITTCSLPDFKALVLPYMENGSLDSYLYPQLGMNF-RSDSSDLSLIQIVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDLTALISDFGIARLVLAVGGGNAGVTENMGNSTANMLSGTIGYIAPEYAFGSNTSTQGDVYSFGILILEMVTRKRPTDVMFVGGLSLRKWVKSYYHQNTENVIYSSLLRALHDLSPEVKSMWEVVIRKLLELGILCTQYSALTRPTMLDVADDLDRLKRYLSGDTTATFASSLSISSSTTGDD 953
MV KR + L LLQ+LV+I ++ +HH H LE D+AALLAFK TIS PNS+L NWN TT VC+F GV CN++ VT++ + LVGLLSP ISNLT LR L L N+L GT IP SLFSNC L N+DLS N L G I P G LWNLNLYNN+FTGEIP S+T AS MYNLD+E N LSGELP +++ NL KL+ LHLSY+ MV +NL PFF AL NC+VL+ELELAG+ L G LP S+GQL L ++L EN+I GSIP +L NL++L LNL++NLL+GT+P E+SQL LEQ+ LS+N+L+G IPA LG + LGLLDLS N+F IP+ LGNL +I MFLN+NLLSG IP +LG CT+L KLDLSYN L G+IPP++ G+REIRM+LN SHN L+G P+ELSKL+NVQE+DLSSNNLTGS+ IS+CIALR+LN S+NFL GQLP+SLG+LKNLE FDVS N LSGNIP +L+ + L FLNLS+N+FSGTIPSGG+F++ T LSFL NQ LCGSVPGI CH+K++ F S F FCI+ +I IC VIG + + S+ N E ER S+P + +FPRITYK+LSEATGGFD+QR++GSGSYG VYKGVL +GTPIA+KVL QTGNSTKSF RECQVLKRIRHRNLIRIIT CSLPDFKALVLPYM NGSLDS+LYP G S SSDLSLIQ VNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDD+TAL+SDFGIARLV+ VG GNAGV EN+G STAN+LSG+IGYIAPEY FGSNT+T+GDVYSFGIL+LEMVTRKRPTD MFVG LSL +WVKS+YH E VI SSL+RA+ D S EVK MWEV I +L+ELGILCTQ S TRPTMLD ADDLDRLK YL+GDTTATFASSL ISSST G+D
Sbjct: 1 MVFKRTMFLYLLQYLVIICGRSLTARQHHHHRSHHSLETDKAALLAFKMTISSDPNSSLANWNRTTHVCNFTGVRCNKQHHRVTQISINDAGLVGLLSPVISNLTRLRVLKLGNNHLFGTIPQELSSLRHLRHVWLERNHLQGQIPDSFSLLVHLGVLNLRVNELTGIIPVSLFSNCTFLQNVDLSANFLEGKIPPEIG--PGLWNLNLYNNQFTGEIPFSITNASSMYNLDVEYNHLSGELPTEIVGNLPKLRYLHLSYSGMVG----SNLDPFFAALGNCTVLEELELAGMKLQGRLPSSIGQLVTYLTTLMLQENRITGSIPPSLSNLTSLEWLNLTSNLLSGTIPEEISQLSLLEQMFLSHNFLSGPIPAALGQFQGLGLLDLSHNRFSDEIPKSLGNLKKISSMFLNHNLLSGAIPASLGNCTNLFKLDLSYNRLNGTIPPEISGLREIRMFLNFSHNHLEGPFPIELSKLENVQEVDLSSNNLTGSVSPLISSCIALRLLNISHNFLQGQLPESLGELKNLEAFDVSVNHLSGNIPTNLNKLLTLTFLNLSSNNFSGTIPSGGVFDSLTNLSFLDNQGLCGSVPGIPDCHRKKNPFHSHTFKITFCIVTAILMVLLIICCVIGCRYFKVIISSGNIETERKSQPELIHNFPRITYKELSEATGGFDQQRLLGSGSYGHVYKGVLPDGTPIAVKVLHLQTGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDSHLYPHSGNGLGTSGSSDLSLIQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDMTALVSDFGIARLVMTVGAGNAGVVENVGTSTANVLSGSIGYIAPEYGFGSNTNTKGDVYSFGILVLEMVTRKRPTDDMFVGALSLHRWVKSHYHGRVEQVIDSSLVRAMKDQSSEVKKMWEVAIGELMELGILCTQDSPSTRPTMLDAADDLDRLKGYLTGDTTATFASSLGISSSTVGND 990
BLAST of XM_017364282.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5QE19 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1180.62 bits (3053), Expect = 0.000e+0
Identity = 601/976 (61.58%), Postives = 725/976 (74.28%), Query Frame = 0
Match: A0A4U5QE19 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1180.62 bits (3053), Expect = 0.000e+0
Identity = 601/976 (61.58%), Postives = 725/976 (74.28%), Query Frame = 0
Query: 31 VSGDHYHHIHHHSLENDRAALLAFKRTISYGPNSTLENWNETTRVCSFGGVYCNQKQQVVTKLILLGTELVGLLSPFISNLTGLRGLILT------------------------------------------------GNNLVGTIPASLFSNCNSLHNIDLSENSLTGLIP-LFGNCSNLWNLNLYNNRFTGEIPLSLTKASFMYNLDLENNLLSGELPVQLIANLTKLKNLHLSYNNMVSHDHNTNLYPFFFALANCSVLKELELAGIGLGGILPGSVGQLSVKLKYMLLGENQIAGSIPLALGNLSALTTLNLSNNLLNGTLPAELSQLRSLEQLILSNNYLTGEIPATLGLYSKLGLLDLSWNKFFGAIPEGLGNLIQIRYMFLNNNLLSGEIPKALGRCTDLDKLDLSYNMLTGSIPPDVKGMREIRMYLNLSHNQLQGSLPLELSKLQNVQEIDLSSNNLTGSIFVQISNCIALRMLNFSNNFLVGQLPQSLGDLKNLEVFDVSTNGLSGNIPVSLSNIHNLIFLNLSTNDFSGTIPSGGIFETTTYLSFLGNQRLCGSVPGIAMCHQKRHYFRSPVFLSIFCIIISISAFFSTICFVIGYKCIRGASSAANFE----AERMSEPGTVPSFPRITYKQLSEATGGFDEQRIIGSGSYGRVYKGVLSEGTPIAIKVLQFQTGNSTKSFTRECQVLKRIRHRNLIRIITTCSLPDFKALVLPYMENGSLDSYLYPQLGMNFRSDSSDLSLIQIVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDLTALISDFGIARLVLAVGGGNAGVTENMGNSTANMLSGTIGYIAPEYAFGSNTSTQGDVYSFGILILEMVTRKRPTDVMFVGGLSLRKWVKSYYHQNTENVIYSSLLRALHDLSPEVKSMWEVVIRKLLELGILCTQYSALTRPTMLDVADDLDRLKRYLSGDTTATFASSLSISSSTTGDD 953
VSG H+H +HSL D++ALLAFK+TI + P S L W E VCSF GV CN+ + V KL L +EL G LSP ISNL+GLR L L+ GN+L GT+P S FSNC SL NIDLS+N LTG IP GNC +WNLNLYNN+FTGE+P SL S +YN+D+E N L+GELP +I L + +LHLSYNNMVSHD NTNL PFF ALANC+ L+ELE+AG+ LGG LP S+G+LSV L ML+ EN+I+G IP + +LS LT LNL++N LNGT+PAE++Q+ SLEQL LS+N LTG IPA L +LGLLDLS N+ G IP LGNL+++ ++FLNNNLLSG IP LG+CTDL KLDLSYN LTGSIP ++ G+REIR +LNLSHN L G LP+ELSKL+NV+EID+SSNNL+GS+F QIS+CIA++++NFS N + G LP S+GDLKNLE FDVS N LSG IP SL+ I +L FLNLS N+F+G IPSGG+F + T SFLGN+ LCG+V G+ C +KR++F S + + IF ++I SA +TIC VIG + I+ S+ N A + P + +FPRITY++L EAT GF+EQR++G+G YGRVYKG+L +GT IA+KVLQ Q+GNSTKSF RECQVLKRIRHRNLIRIIT CSLPDFKALVLPYM NGSLDS LYP S SSDL+L+Q V+ICSDIAEGMAYLHHHSPV+VIHCDLKPSNVLLNDD+TAL+SDFGIARLV+ V GGN G +NMGNSTAN++ G++GYIAPEY FGSNTST+GDVYSFG+L+LE++TRKRPTD MFV GL+L KWVK++YH E V+ SSL+RA D SPEVK MWEV I +L ELGILCTQ S TRPTMLD ADDLDRLKRYLSGDTTATFASSL +SSST DD
Sbjct: 22 VSGSHHHR--NHSLLADKSALLAFKKTIVFDPKSMLATWTEDGDVCSFAGVRCNKHRHSVVKLNLSRSELTGPLSPIISNLSGLRNLSLSENNFYGIIPPEFSSLQHLHSLLLDSNNLHGPFPEFLSILPNLTVLSLNGNHLTGTLPPSFFSNCTSLANIDLSQNLLTGRIPEEIGNCPGIWNLNLYNNQFTGELPASLANISELYNIDVEYNNLTGELPANIIGKLYSVVSLHLSYNNMVSHDRNTNLEPFFTALANCTELEELEMAGMNLGGRLPSSIGRLSVNLDTMLMQENRISGMIPSEIAHLSNLTVLNLTSNSLNGTIPAEINQMSSLEQLFLSHNLLTGAIPAALCQLPRLGLLDLSNNQLSGEIPATLGNLVRLSFLFLNNNLLSGTIPPTLGQCTDLSKLDLSYNKLTGSIPAEISGIREIRRFLNLSHNHLDGPLPIELSKLENVEEIDVSSNNLSGSVFFQISSCIAVKLINFSRNSIEGHLPDSIGDLKNLESFDVSGNHLSGGIPTSLNKIQSLSFLNLSFNNFAGVIPSGGVFNSVTDKSFLGNRHLCGTVYGMPKCSRKRNWFHSRMLI-IFVLVIFASAILTTICCVIGIRRIKANVSSGNSVDTELARKQKTPELIHNFPRITYRELLEATEGFEEQRLLGTGGYGRVYKGLLQDGTAIAVKVLQLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDSRLYPHSETGLGSCSSDLTLLQRVSICSDIAEGMAYLHHHSPVKVIHCDLKPSNVLLNDDMTALVSDFGIARLVMTVAGGNGGTVDNMGNSTANLVCGSVGYIAPEYGFGSNTSTKGDVYSFGVLVLEILTRKRPTDAMFVDGLNLHKWVKTHYHGRVERVVDSSLMRASRDQSPEVKRMWEVAIGELAELGILCTQESPTTRPTMLDAADDLDRLKRYLSGDTTATFASSLGMSSSTLSDD 994
BLAST of XM_017364282.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5PL26 ((Putative leucine-rich repeat receptor-like serine/threonine-protein kinase {ECO:0000313|EMBL:TKR97360.1}))
HSP 1 Score: 1169.84 bits (3025), Expect = 0.000e+0
Identity = 617/979 (63.02%), Postives = 729/979 (74.46%), Query Frame = 0
Match: A0A4U5PL26 ((Putative leucine-rich repeat receptor-like serine/threonine-protein kinase {ECO:0000313|EMBL:TKR97360.1}))
HSP 1 Score: 1169.84 bits (3025), Expect = 0.000e+0
Identity = 617/979 (63.02%), Postives = 729/979 (74.46%), Query Frame = 0
Query: 28 AVQVSGDHYHHIHHHSLENDRAALLAFKRTISYGPNSTLENWNETTRVCSFGGVYCNQKQQVVTKLILLGTELVGLLSPFISNLTGLRGLI------------------------------------------------LTGNNLVGTIPASLFSNCNSLHNIDLSENSLTGLIPL-FGNCSNLWNLNLYNNRFTGEIPLSLTKASFMYNLDLENNLLSGELPVQLIANLTKLKNLHLSYNNMVSHDHNTNLYPFFFALANCSVLKELELAGIGLGGILPGSVGQLSVKLKYMLLGENQIAGSIPLALGNLSALTTLNLSNNLLNGTLPAELSQLRSLEQLILSNNYLTGEIPATLGLYSKLGLLDLSWNKFFGAIPEGLGNLIQIRYMFLNNNLLSGEIPKALGRCTDLDKLDLSYNMLTGSIPPDVKGMREIRMYLNLSHNQLQGSLPLELSKLQNVQEIDLSSNNLTGSIFVQISNCIALRMLNFSNNFLVGQLPQSLGDLKNLEVFDVSTNGLSGNIPVSLSNIHNLIFLNLSTNDFSGTIPSGGIFETTTYLSFLGNQRLCGSVPGIAMCHQKRHYFRSPVFLSIFCIIISISAFFSTICFVIGYKCIRGASSAANF----EAERMSEPGTVPSFPRITYKQLSEATGGFDEQRIIGSGSYGRVYKGVLSEGTPIAIKVLQFQTGNSTKSFTRECQVLKRIRHRNLIRIITTCSLPDFKALVLPYMENGSLDSYLYPQLGMNFRSDSSDLSLIQIVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDLTALISDFGIARLVLAVGGGNAGVTENMGNSTANMLSGTIGYIAPEYAFGSNTSTQGDVYSFGILILEMVTRKRPTDVMFVGGLSLRKWVKSYYHQNTENVIYSSLLRALHDLSPEVKSMWEVVIRKLLELGILCTQYSALTRPTMLDVADDLDRLKRYLSGDTTATFASSLSISSSTTGDD 953
A VSG +H +HSL D AALLAFK+TI + P S L W E VCSF GV C++ + V +L L + L G LSP ISNL+GLR LI LT N+L+GT+P SLFSNC SL NI+LS+N LTG IP GNC +LWN+NLYNN+FTGE+P SL S +YN+D+E+N L+GELP +I L + +LH SYN MVSHDHNTNL PFF ALANC+ L+ELELAG+ LGG LPGS+G+LS L+ +LL EN I G+IP + LS+LT LNL++N LNGT+PAE+S+L LEQL LS+N LTG IPA LG LGLLDLS N+ G IP LGNL+++ +MFLNNNLL+G IP LG+CTDL LDLS+N LTGSIPP++ G+REIR Y+NLSHN L G LP+ELSKL+NV+EID+SSNNL+GSIF QIS+CIA+ LNFS+N + G LP S+GDLKNLE FDVS N LSG IP SL+ +L +LNLS NDF+G IPSGG+F + T SFLGNQ LCG+V G+ C Q RH+FR +FL +F ++ SAF +TIC VIG + I+ S+ N +A R P + +FPRITY++LSEATGGFDEQR++G+GSYGRVYKG+L +GT IA+KVLQFQ+GNSTKSF RECQVLKRIRHRNLIRIIT CSLPDFKALVLPYM NGSLDS LYP S SSDL+L Q V+ICSDIAEGMAYLHHHSPV+VIHCDLKPSNVLLND +TAL+SDFGIARLV+ VGGGN GV ENMGNSTAN+L G+IGYIAPEY FGSNTST+GDVYSFG+L+LEMVTRKRPTD MFVGGL+L KWVK++YH E V+ SL+RA D PEVK MWEV I +L+ELGILCTQ S TRPTMLD ADDLDRLKRYLSGDTTATFASSL ISSST GDD
Sbjct: 20 AFAVSGSRHHR--NHSLLADEAALLAFKKTIVFDPESKLAGWTEGGDVCSFTGVRCDKHRHSVVQLNLSRSGLTGALSPVISNLSGLRYLILDENHFYGIIPPEFSSLRHLHSLRLDSNNLRGSLPGFLGALPNLTVLTLTENHLMGTLPPSLFSNCTSLANIELSQNLLTGKIPQEIGNCPSLWNVNLYNNQFTGELPASLANISELYNIDVESNSLTGELPANIIGKLYSVVSLHFSYNKMVSHDHNTNLEPFFTALANCTELQELELAGMRLGGRLPGSIGRLSGDLRTLLLQENSIFGTIPPGIARLSSLTWLNLTSNSLNGTIPAEISRLSDLEQLFLSHNLLTGAIPAALGQLPHLGLLDLSNNQLSGEIPASLGNLVRLSFMFLNNNLLTGTIPPTLGKCTDLFMLDLSHNRLTGSIPPEISGIREIRRYINLSHNLLDGPLPIELSKLENVEEIDVSSNNLSGSIFFQISSCIAVTRLNFSHNSIEGHLPDSIGDLKNLESFDVSGNHLSGGIPTSLNKSRSLSYLNLSFNDFAGVIPSGGVFNSVTEKSFLGNQGLCGAVSGMPKCSQNRHWFRLRLFLIVFALVTFASAFLTTICCVIGIRRIKAMVSSGNSVDTEQARRPETPELIHNFPRITYRELSEATGGFDEQRLVGTGSYGRVYKGLLPDGTAIAVKVLQFQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDSRLYPHSETGLGSGSSDLTLPQRVSICSDIAEGMAYLHHHSPVKVIHCDLKPSNVLLNDHMTALVSDFGIARLVMTVGGGNGGVVENMGNSTANLLCGSIGYIAPEYGFGSNTSTKGDVYSFGVLVLEMVTRKRPTDDMFVGGLNLHKWVKTHYHGRLEKVVDPSLMRASRDQFPEVKRMWEVAIGELVELGILCTQESPSTRPTMLDAADDLDRLKRYLSGDTTATFASSLGISSSTLGDD 996
BLAST of XM_017364282.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5EVL7 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PON89582.1}))
HSP 1 Score: 1166.37 bits (3016), Expect = 0.000e+0
Identity = 610/989 (61.68%), Postives = 720/989 (72.80%), Query Frame = 0
Match: A0A2P5EVL7 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PON89582.1}))
HSP 1 Score: 1166.37 bits (3016), Expect = 0.000e+0
Identity = 610/989 (61.68%), Postives = 720/989 (72.80%), Query Frame = 0
Query: 17 LLLLQHLVLIIAVQVSGDHYHHIHHHSLENDRAALLAFKRTISYGPNSTLENWNETTRVCSFGGVYCNQKQQVVTKLILLGTELVGLLSPFISNLTGLRGLILTGNNLVGTIPASL------------------------------------------------FSNC-NSLHNIDLSENSLTGLIPL-FGNCSNLWNLNLYNNRFTGEIPLSLTKASFMYNLDLENNLLSGELPVQLIANLTKLKNLHLSYNNMVSHDHNTNLYPFFFALANCSVLKELELAGIGLGGILPGSVGQLSVKLKYMLLGENQIAGSIPLALGNLSALTTLNLSNNLLNGTLPAELSQLRSLEQLILSNNYLTGEIPATLGLYSKLGLLDLSWNKFFGAIPEGLGNLIQIRYMFLNNNLLSGEIPKALGRCTDLDKLDLSYNMLTGSIPPDVKGMREIRMYLNLSHNQLQGSLPLELSKLQNVQEIDLSSNNLTGSIFVQISNCIALRMLNFSNNFLVGQLPQSLGDLKNLEVFDVSTNGLSGNIPVSLSNIHNLIFLNLSTNDFSGTIPSGGIFETTTYLSFLGNQRLCGSVPGIAMCHQKRHYFRSPVFLSIFCIIISISAFFSTICFVIGYKCIRGASSAANFEAERMS--EPGTVPSFPRITYKQLSEATGGFDEQRIIGSGSYGRVYKGVLSEGTPIAIKVLQFQTGNSTKSFTRECQVLKRIRHRNLIRIITTCSLPDFKALVLPYMENGSLDSYLYPQLGMNFRSDSSDLSLIQIVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDLTALISDFGIARLVLAVGGGNAGVTENMGNSTANMLSGTIGYIAPEYAFGSNTSTQGDVYSFGILILEMVTRKRPTDVMFVGGLSLRKWVKSYYHQNTENVIYSSLLRALHDLSPEVKSMWEVVIRKLLELGILCTQYSALTRPTMLDVADDLDRLKRYLSGDTTATFASSLSISSSTTGDD 953
LLLLQH+VL +V+ + H HH SL DRAALL FK+ I + P S L NWN++ +C F GV C++ V +LIL + LVG+LSPF+SNLTGLR L ++ N GTIP L FSNC SL +DL+ NS TG IP+ GNC+NLW+L+LYNN+FTGE+P SLTK + + NLD+E N +GELP ++I +L LK LHLSYN M SHD NTNL PFF AL +C++L ELELAG+ LGG LP S+G+L + L EN+I GSIP ++ NL L LNLS+N LN T+ AE+ L L+QL LS+N+ +G IP + LGLLDLS N+F G IP LGNL ++ Y+FLNNN LSG IP +LGRCT+L K+DLSYN L+G+IP + GM EIR+++N SHNQL+G LPLELSKL++VQEIDLSSNNL+GSIF QIS+CIA+R++NFSNN L G LP SLG+LKNLE FDVS N LSG IP SL+ L FLNLS NDF G IPSGGIF T LS +GN RLCG G+ C +KRH FRS +FL IF ++I ISAF S IC VIG + I+ S+ +A R P + +FPRITY++LS+AT GFD+QR++GSGSYGRVYKGVLS+GT IA+KVL Q+GNSTKSF RECQVLKRIRHRNLIRIIT CSLPDFKALVLPYM NGSLDS LYP G + SSDL+LIQ VNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDD+TAL+SDFGIARLV+ GGNA ENMGNSTANML+G+IGYIAPEY FGS TST+GDVYSFGIL+LEMVTRKRPTD MFVG LSL +WVKS+YH E V+ SSL+RA D PEVK MWEV I +L+ELGILCTQ S TRPTMLD ADDLDRLKRYL+GDTTATFASSL ISSST GDD
Sbjct: 39 LLLLQHVVLT-SVRAAVGHQHHHPRRSLATDRAALLEFKKAIIHDPYSKLLNWNDSVHICRFNGVRCDKHHHRVAQLILNDSGLVGVLSPFVSNLTGLRILYISNNQFFGTIPKQLSSLRHLRYLQIDGNNFEGPIIDSLSIFPKIIGAAFLNNHFKGTISPAFFSNCPRSLEALDLANNSFTGEIPVEIGNCTNLWSLSLYNNQFTGELPFSLTK-TVIANLDIEYNNFTGELPSKIIGHLPGLKYLHLSYNLMESHDGNTNLTPFFDALQSCTLLVELELAGMNLGGRLPDSIGRLGADTNSISLQENKITGSIPPSISNLQKLNILNLSSNRLNETISAEIRNLPQLQQLFLSHNFFSGTIPEVFDRFPLLGLLDLSHNEFSGEIPASLGNLSRLNYLFLNNNRLSGRIPPSLGRCTELHKIDLSYNRLSGTIPSQISGMSEIRIFMNFSHNQLEGPLPLELSKLEDVQEIDLSSNNLSGSIFPQISSCIAVRLINFSNNSLNGTLPDSLGELKNLEAFDVSGNHLSGMIPTSLNKSRILTFLNLSFNDFEGMIPSGGIFSLITNLSVMGNPRLCGKRAGLHPCPRKRHLFRSRIFLIIFSLVIFISAFLSIICCVIGLRRIQIIISSKKQQAVRRKPRAPEPILNFPRITYRELSDATAGFDDQRLVGSGSYGRVYKGVLSDGTAIAVKVLHVQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDSRLYPHSGPGLGTGSSDLNLIQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDMTALVSDFGIARLVMTAAGGNAAF-ENMGNSTANMLAGSIGYIAPEYGFGSITSTKGDVYSFGILVLEMVTRKRPTDDMFVGELSLHRWVKSHYHGRVEKVVDSSLVRASKDQLPEVKKMWEVAIGELIELGILCTQESPSTRPTMLDAADDLDRLKRYLTGDTTATFASSLGISSSTIGDD 1024
BLAST of XM_017364282.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9GVM5 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1165.6 bits (3014), Expect = 0.000e+0
Identity = 601/976 (61.58%), Postives = 723/976 (74.08%), Query Frame = 0
Match: B9GVM5 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1165.6 bits (3014), Expect = 0.000e+0
Identity = 601/976 (61.58%), Postives = 723/976 (74.08%), Query Frame = 0
Query: 31 VSGDHYHHIHHHSLENDRAALLAFKRTISYGPNSTLENWNETTRVCSFGGVYCNQKQQVVTKLILLGTELVGLLSPFISNLTGLRGLILT------------------------------------------------GNNLVGTIPASLFSNCNSLHNIDLSENSLTGLIP-LFGNCSNLWNLNLYNNRFTGEIPLSLTKASFMYNLDLENNLLSGELPVQLIANLTKLKNLHLSYNNMVSHDHNTNLYPFFFALANCSVLKELELAGIGLGGILPGSVGQLSVKLKYMLLGENQIAGSIPLALGNLSALTTLNLSNNLLNGTLPAELSQLRSLEQLILSNNYLTGEIPATLGLYSKLGLLDLSWNKFFGAIPEGLGNLIQIRYMFLNNNLLSGEIPKALGRCTDLDKLDLSYNMLTGSIPPDVKGMREIRMYLNLSHNQLQGSLPLELSKLQNVQEIDLSSNNLTGSIFVQISNCIALRMLNFSNNFLVGQLPQSLGDLKNLEVFDVSTNGLSGNIPVSLSNIHNLIFLNLSTNDFSGTIPSGGIFETTTYLSFLGNQRLCGSVPGIAMCHQKRHYFRSPVFLSIFCIIISISAFFSTICFVIGYKCIRGASSAANFEAERMSEPGTVP----SFPRITYKQLSEATGGFDEQRIIGSGSYGRVYKGVLSEGTPIAIKVLQFQTGNSTKSFTRECQVLKRIRHRNLIRIITTCSLPDFKALVLPYMENGSLDSYLYPQLGMNFRSDSSDLSLIQIVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDLTALISDFGIARLVLAVGGGNAGVTENMGNSTANMLSGTIGYIAPEYAFGSNTSTQGDVYSFGILILEMVTRKRPTDVMFVGGLSLRKWVKSYYHQNTENVIYSSLLRALHDLSPEVKSMWEVVIRKLLELGILCTQYSALTRPTMLDVADDLDRLKRYLSGDTTATFASSLSISSSTTGDD 953
VSG H+H +HSL D+AALLAFK+TI + P S L W E VCSF GV C++ + V KL L +EL G LSP ISNL+GLR L L+ GN+L G +P S FSNC SL NIDLS+N LTG IP GNC +WNLNLYNN+FTGE+P SL S +YN+D+E N L+GELP +I L + +LHLSYNNMVSHD NTNL PFF ALANC+ L+ELE+AG+ LGG LP S+G+LSV L ML+ EN+I+G IP + +LS LT LNL++N LNGT+PAE++Q+ SLEQL LS+N LTG IPA L +LGLLDLS N+ G IP LGNL+++ ++FLNNNLLSG IP LG+CTDL KLDLSYN LTGSIP ++ G+REIR +LNLSHN L G LP+ELSKL+NV+EID+SSNNL+GS+F QIS+CIA++++NFS+N + G LP S+GDLKNLE FDVS N LSG IP SL+ I +L FLNLS N+F+G IPSGG+F + T SFLGN+ LCG+V G+ C +KR++F S + + IF ++ SA +TIC VIG + I+ S+ N E ++ P +FPRITY++L EAT GF+EQR++G+G YGRVYKG+L +GT IA+KVLQ Q+GNSTKSF RECQVLKRIRHRNLIRIIT CSLPDFKALVLPYM NGSLDS LYP S SSDL+L+Q V ICSDIAEGMAYLHHHSPV+VIHCDLKPSNVLLNDD+TAL+SDFGIARLV+ V GGN G ENMGNSTAN+L G++GYIAPEY FGSNTST+GDVYSFG+L+LE++TRKRPTD MFV GL+L KWVK++YH E V+ SSL+RA D SPEVK MWEV I +L ELGILCTQ S TRPTMLD ADDLDRLKRYLSGDTTATFASSL +SSST DD
Sbjct: 23 VSGSHHHR--NHSLLADKAALLAFKKTIVFDPKSMLATWTEDGDVCSFAGVRCDKHRHSVVKLNLSRSELTGPLSPIISNLSGLRNLSLSENSFYGIIPPEFSSLQHLHSLLLDSNNLHGPFPEFLSILPNLTVLSLNGNHLTGALPPSFFSNCTSLANIDLSQNLLTGRIPEEIGNCPGIWNLNLYNNQFTGELPASLANISELYNIDVEYNNLTGELPANIIGKLYSVVSLHLSYNNMVSHDRNTNLEPFFTALANCTELEELEMAGMNLGGRLPSSIGRLSVNLDTMLMQENRISGMIPSEIAHLSNLTVLNLTSNSLNGTIPAEINQMSSLEQLFLSHNLLTGAIPAALCQLPRLGLLDLSNNQLSGEIPATLGNLVRLSFLFLNNNLLSGTIPPTLGQCTDLSKLDLSYNKLTGSIPTEISGIREIRRFLNLSHNHLDGPLPIELSKLENVEEIDVSSNNLSGSVFFQISSCIAVKLINFSHNSIEGHLPDSIGDLKNLESFDVSGNHLSGGIPTSLNKIQSLSFLNLSFNNFAGVIPSGGVFNSVTDKSFLGNRHLCGTVYGMPKCSRKRNWFHSRMLI-IFVLVTFASAILTTICCVIGIRRIKATVSSGNSVDEELARKQKTPELIHNFPRITYRELLEATEGFEEQRLLGTGGYGRVYKGLLQDGTAIAVKVLQLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDSRLYPHSETGLGSGSSDLTLLQRVRICSDIAEGMAYLHHHSPVKVIHCDLKPSNVLLNDDMTALVSDFGIARLVMTVAGGNGGAVENMGNSTANLLCGSVGYIAPEYGFGSNTSTKGDVYSFGVLVLEILTRKRPTDDMFVDGLNLHKWVKTHYHGRVERVVDSSLMRASRDQSPEVKRMWEVAIGELAELGILCTQESPTTRPTMLDAADDLDRLKRYLSGDTTATFASSLGMSSSTLSDD 995
BLAST of XM_017364282.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4DLR1 ((putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 {ECO:0000313|RefSeq:XP_018808091.2}))
HSP 1 Score: 1164.06 bits (3010), Expect = 0.000e+0
Identity = 602/977 (61.62%), Postives = 723/977 (74.00%), Query Frame = 0
Match: A0A2I4DLR1 ((putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 {ECO:0000313|RefSeq:XP_018808091.2}))
HSP 1 Score: 1164.06 bits (3010), Expect = 0.000e+0
Identity = 602/977 (61.62%), Postives = 723/977 (74.00%), Query Frame = 0
Query: 31 VSGDHYHHIHHHSLENDRAALLAFKRTISYGPNSTLENWNETTRVCSFGGVYCNQKQQVVTKLILLGTELVGLLSPFISNLTGLRGLILTG------------------------------------------------NNLVGTIPASLFSNCNSLHNIDLSENSLTGLIP-LFGNCSNLWNLNLYNNRFTGEIPLSLTKASFMYNLDLENNLLSGELPVQLIANLTKLKNLHLSYNNMVSHDHNTNLYPFFFALANCSVLKELELAGIGLGGILPGSVGQLSVKLKYMLLGENQIAGSIPLALGNLSALTTLNLSNNLLNGTLPAELSQLRSLEQLILSNNYLTGEIPATLGLYSKLGLLDLSWNKFFGAIPEGLGNLIQIRYMFLNNNLLSGEIPKALGRCTDLDKLDLSYNMLTGSIPPDVKGMREIRMYLNLSHNQLQGSLPLELSKLQNVQEIDLSSNNLTGSIFVQISNCIALRMLNFSNNFLVGQLPQSLGDLKNLEVFDVSTNGLSGNIPVSLSNIHNLIFLNLSTNDFSGTIPSGGIFETTTYLSFLGNQRLCGSV----PGIAMCHQKRHYFRSPVFLSIFCIIISISAFFSTICFVIGYKCIRG-ASSAANFEAERMSEPGTVPSFPRITYKQLSEATGGFDEQRIIGSGSYGRVYKGVLSEGTPIAIKVLQFQTGNSTKSFTRECQVLKRIRHRNLIRIITTCSLPDFKALVLPYMENGSLDSYLYPQLGMNFRSDSSDLSLIQIVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDLTALISDFGIARLVLAVGGGNAGVTENMGNSTANMLSGTIGYIAPEYAFGSNTSTQGDVYSFGILILEMVTRKRPTDVMFVGGLSLRKWVKSYYHQNTENVIYSSLLRALHDLSPEVKSMWEVVIRKLLELGILCTQYSALTRPTMLDVADDLDRLKRYLSGDTTATFASSLSISSSTTGDD 953
V+ YH+ H SL +D+AALL FK+TI+ PNSTL NWNET VC+F V C++ V++LIL T LVGLLSPFISNLTGLR L++ G NN+ GT+P LFSNC+ L NIDLS NSL+G IP GNCS LWNLNLYNN+FTG++P SL + + N+D+E N +SGELP +++ L L+ LHLSYN+M+SHD NTNL PFF AL NC+ + E+EL G+ LGG LP S+G L V+L+Y+ L ENQI GSIP +GNLS+L L++++NLLNGT+ E+ QL SL+QL+LS N TG IP+ LG + LGLLDLS NKF G IP LG+LI + +FLNNNLLSG IP LGRCT L KLDLS+N LTGSIPP++ G+R+IR+++NLSHN L+G LP+ELSK +NVQE+DLSSN TG+IF QIS+CIAL +NFS+N L GQLP+SLG+++ LE FDVS N LSG IP+SLS I +L+++NLS N+F GTIP+GG+F++ T +S L N RLC +V GI +C F S VFL IF I+I IS F ST+C VIG + IR S + S P + +FPR+TYK+LS+AT GFDEQR++GSGS+GRVY+GVL +GT IA+KVL Q+GNSTKSF+RECQVLKRIRHRNLIRIIT CSLPDFKALVLPYM NGSLDS LYP S SSDLSL+Q VNICSDIAEGMAYLHHHSP+RVIHCDLKPSNVLLNDD+TAL+SDFGIA+LV+ GGGN G E MGNSTAN+L G+IGYIAPEY FGS TST+GDVYSFGIL+LEMVTR+RPTD MFVGGLSL +WVKSY+H E VI +SLLRA D S EVK MWEV I +LLELGILCTQ S TRPTMLD ADDL+RLKRYL+GDTTATF SSL ISSST GDD
Sbjct: 22 VTNSGYHNPPHLSLNSDKAALLEFKKTITLDPNSTLANWNETNEVCNFKCVRCDKHHHRVSQLILKDTHLVGLLSPFISNLTGLRILMINGNHLFGNIPPEFSSLRHLRYLRLVGNNLHGSIPDSLGHLSRLTLLHIMSNNVSGTLPPFLFSNCSLLLNIDLSGNSLSGKIPETIGNCSQLWNLNLYNNQFTGQLPPSLITCN-LSNIDVEYNNISGELPSEIVRKLPNLQFLHLSYNDMISHDGNTNLAPFFNALGNCTAIAEVELDGMDLGGQLPSSIGSLGVELQYLSLQENQIFGSIPPDIGNLSSLIDLDMTSNLLNGTIAEEIDQLSSLDQLVLSQNMFTGAIPSALGRVAHLGLLDLSHNKFSGEIPASLGDLIGLYSLFLNNNLLSGTIPPTLGRCTGLYKLDLSHNRLTGSIPPELAGLRDIRIFMNLSHNNLEGPLPIELSKQENVQEMDLSSNKFTGNIFPQISSCIALTKINFSDNLLEGQLPESLGEVRYLESFDVSGNHLSGKIPISLSKISSLVYVNLSFNNFKGTIPTGGVFDSITAMSLLENHRLCRNVTNRLAGIPICKTSGPLFHSTVFLVIFVIVIFISVFLSTVCCVIGVRRIRAIIHSRKTRTVRKPSTPELILNFPRVTYKELSDATEGFDEQRLVGSGSFGRVYRGVLPDGTAIAVKVLHLQSGNSTKSFSRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDSRLYPHSNTGLGSGSSDLSLLQRVNICSDIAEGMAYLHHHSPIRVIHCDLKPSNVLLNDDMTALVSDFGIAKLVMTAGGGNGGAVE-MGNSTANLLCGSIGYIAPEYGFGSTTSTKGDVYSFGILVLEMVTRRRPTDDMFVGGLSLHQWVKSYFHGRVERVIDTSLLRASKDQSHEVKKMWEVAIGELLELGILCTQESPSTRPTMLDAADDLNRLKRYLTGDTTATFTSSLGISSSTLGDD 996
BLAST of XM_017364282.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6XI35 ((putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 {ECO:0000313|RefSeq:XP_027122555.1, ECO:0000313|RefSeq:XP_027125667.1}))
HSP 1 Score: 1162.52 bits (3006), Expect = 0.000e+0
Identity = 612/1001 (61.14%), Postives = 734/1001 (73.33%), Query Frame = 0
Match: A0A6P6XI35 ((putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 {ECO:0000313|RefSeq:XP_027122555.1, ECO:0000313|RefSeq:XP_027125667.1}))
HSP 1 Score: 1162.52 bits (3006), Expect = 0.000e+0
Identity = 612/1001 (61.14%), Postives = 734/1001 (73.33%), Query Frame = 0
Query: 6 FFNMVTKRNLSLLLLQHLVLIIAVQVSGDHYHHIHHHSLENDRAALLAFKRTISYGPNSTLENWNETTRVCSFGGVYCN-QKQQVVTKLILLGTELVGLLSPFISNLTGLR----------GLI--------------------------------------LTGNNLVGTIPASLFSNCNSLHNIDLSENSLTGLIPL-FGNCSNLWNLNLYNNRFTGEIPLSLTKASFMYNLDLENNLLSGELPVQLIANLTKLKNLHLSYNNMVSHDHNTNLYPFFFALANCSVLKELELAGIGLGGILPGSVGQLSVKLKYMLLGENQIAGSIPLALGNLSALTTLNLSNNLLNGTLPAELSQLRSLEQLILSNNYLTGEIPATLGLYSKLGLLDLSWNKFFGAIPEGLGNLIQIRYMFLNNNLLSGEIPKALGRCTDLDKLDLSYNMLTGSIPPDVKGMREIRMYLNLSHNQLQGSLPLELSKLQNVQEIDLSSNNLTGSIFVQISNCIALRMLNFSNNFLVGQLPQSLGDLKNLEVFDVSTNGLSGNIPVSLSNIHNLIFLNLSTNDFSGTIPSGGIFETTTYLSFLGNQRLCGSVPGIAMCHQKRHYFRSPVFLSIFCIIISISAFFSTICFVIG---YKCIRGASSAANFEAERMSEPGTVPSFPRITYKQLSEATGGFDEQRIIGSGSYGRVYKGVLSEGTPIAIKVLQFQTGNSTKSFTRECQVLKRIRHRNLIRIITTCSLPDFKALVLPYMENGSLDSYLYPQLGMNFRSDSSDLSLIQIVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDLTALISDFGIARLVLAVGGGNAGVTENMGNSTANMLSGTIGYIAPEYAFGSNTSTQGDVYSFGILILEMVTRKRPTDVMFVGGLSLRKWVKSYYHQNTENVIYSSLLRALHDLSPEVKSMWEVVIRKLLELGILCTQYSALTRPTMLDVADDLDRLKRYLSGDTTATFASSLSISSSTTGDD 953
F NMV + + L LQHL++I A +S +H HSLE D+AALLAFK +IS+ P S L NWNETT VC F G+ C+ + V +L L + LVG LSPFISNLT LR G I L+GNNL GTIP S FSNC SLHN+DLSEN L+G IP G+C LW LN+Y+N+ G IP S+T AS + NLD ENN LSGELPV +++ L + LHLSYNNM+S D NTNL PFF AL+NCS L+ELELAG+ LGG LP S G ++ L +LL EN I GSIP + +LS L +NL+ N NGT+P E+ QL LE+L LS N +GEIPA LG S+LGLLDLS N+ G IPE G+L+ I Y+FLNNNLLSG+IP++LG+C DL+KLDLSYN LTGSIPP++ G+R I ++LNLSHNQL+G +P+ELSKL+NVQEIDLSSN L G IFVQIS+CIAL+ +N SNNFL GQLP+SLG+L +L+V DV+ N LSG IP SL+ + L FLNLS N+F G IP+GGIF+ T LSF+GNQ LCG +PG CHQK +F S +FL I C ++S+S F STIC VIG K + G++S E E P + +FPRITYK+L+EATGGF++QR+IGSGSYGRVYKGVL +GT IA+KVL QTGNSTKSF RECQVLKRIRHRNL+RIIT CSLPDFKALVLPYM NGSLDS LYP S SSDLSL+Q +NICSDIAEGMAYLHHHSPV+VIHCDLKPSNVLLNDD+TAL+SDFGIARLV+ +G GNAGV ENMGNSTAN+L G++GYIAPEY FG++ ST+GDVYSFG+++LEMVTRKRPTD MFVGGLSL ++VK YYH+ E ++ SSL+RA+ D +PEVK M EV I +L+ELGILCTQ S RPTMLD ADDL+RLK+YL GDTTATFASSL ISSST D
Sbjct: 4 FSNMVFEGTVILYFLQHLLIISATGLSVHQHHFPFRHSLETDKAALLAFKGSISFDPYSRLANWNETTHVCRFTGIACDGRHHHRVVRLNLNDSGLVGRLSPFISNLTQLRVIELVNNQFSGFIPSEFGFLRNLHHIKLDGNNLCGPIPETFSFLANLTLVALSGNNLSGTIPPSFFSNCTSLHNVDLSENFLSGKIPAEIGSCPKLWTLNIYSNQLEGGIPSSITNASELINLDAENNQLSGELPVDIVSKLYSINYLHLSYNNMISQDANTNLEPFFTALSNCSELEELELAGMRLGGSLPYSFGGVTKTLAILLLQENHIHGSIPPQIAHLSNLKLMNLTLNQFNGTIPDEIGQLSYLERLSLSFNSFSGEIPAALGQLSRLGLLDLSNNQLSGKIPESFGDLVNIYYLFLNNNLLSGKIPRSLGKCRDLNKLDLSYNKLTGSIPPEM-GIRGIAIFLNLSHNQLEGHIPIELSKLENVQEIDLSSNQLGGIIFVQISSCIALQTINLSNNFLEGQLPESLGELWSLKVVDVAWNKLSGRIPTSLNKVSTLTFLNLSFNNFDGRIPTGGIFDFATNLSFVGNQHLCGIIPGFPTCHQKLEFFHSHLFLIILCSVVSVSMFLSTICCVIGCQRLKVVIGSTSQP--ERENQMPPEVMHNFPRITYKELAEATGGFEDQRLIGSGSYGRVYKGVLPDGTSIAVKVLHLQTGNSTKSFNRECQVLKRIRHRNLMRIITACSLPDFKALVLPYMANGSLDSRLYPHPRTGLSSGSSDLSLLQRINICSDIAEGMAYLHHHSPVKVIHCDLKPSNVLLNDDMTALVSDFGIARLVMTIGAGNAGVMENMGNSTANLLRGSVGYIAPEYGFGASASTKGDVYSFGVMVLEMVTRKRPTDDMFVGGLSLHRYVKCYYHREVEKIVDSSLIRAVKDETPEVKKMSEVAIGELIELGILCTQDSPSARPTMLDAADDLNRLKKYLGGDTTATFASSLGISSSTFSSD 1001
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5BH72 | E-Value: 0.000e+0, PID: 64.79 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A2R6PSJ0 | E-Value: 0.000e+0, PID: 64.20 | (Leucine-rich repeat receptor-like serine/threonin... [more] |
| A0A067LBT1 | E-Value: 0.000e+0, PID: 65.01 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A2R6PUQ7 | E-Value: 0.000e+0, PID: 63.65 | (Leucine-rich repeat receptor-like serine/threonin... [more] |
| A0A4U5QE19 | E-Value: 0.000e+0, PID: 61.58 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A4U5PL26 | E-Value: 0.000e+0, PID: 63.02 | (Putative leucine-rich repeat receptor-like serine... [more] |
| A0A2P5EVL7 | E-Value: 0.000e+0, PID: 61.68 | (Serine/threonine protein kinase {ECO:0000313|EMBL... [more] |
| B9GVM5 | E-Value: 0.000e+0, PID: 61.58 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A2I4DLR1 | E-Value: 0.000e+0, PID: 61.62 | (putative leucine-rich repeat receptor-like serine... [more] |
| A0A6P6XI35 | E-Value: 0.000e+0, PID: 61.14 | (putative leucine-rich repeat receptor-like serine... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |