XM_017363076.1

Resource Type: 
Polypeptide
Name: 
XM_017363076.1
Identifier: 
XM_017363076.1-protein
Sequence: 
MGFDLGSIDSFGLPVSESQCKKRKFVLNDTDASIVGKLPCSMDASLPTLL
SCDYFMEPCLSEMATQELLNPGYCRRVRDFTVGRSGYGRVKFTGETDVRW
LDLDHLVKFSRHELVVYEDESSKPVVGQGLNKEAEVTLVVQIRYRKDGLI
AFVKKLRLITERQGAEFISFDPSNGEWKFLVHHFSRFGLDEDDEEDITMD
DAAPEVEEPHEISGGEVYGADDKNAIIDPTLLSHSLPSHLGLDPVKMRDM
RMMMFSAEDEDEYSEEMNGSMSHQKQFFHNQSKRSPLKQASRRTVHRPSP
PAIRKTPLALLEYNPGNFESSPPGSILMAQQNKGLSLKPTKLDGFKLDMK
HDSPVTASHSRNVVDASLFMGRSFGVGWGPNGILVHAGAPVGNSNSREIS
SVVNLEKVAFDKVVRDENNQVSDDLIDFCFDSPLKFHMELKHETKEIGTG
SCKLKLQKLVCDPLLLSDTCRGYIGITEEQLEVPGLTSYARVILMHQVQV
WELIKVLFSLKESRARSNVLEDSQDDTMQDRKDSDQDIDQEALELIRRAE
FSYWLQESVCHRVQEELSSSDESNDLQQIFLLLTGRQLDAAVELSASRGD
VRLACLLSQAGGSTVNRSDIFKQLEIWRNNGLDFNFIETDRTRLFELLAG
NIHGALDGLNIDWKRFLGLLMWYNLPPETSLPAIFQTYQKLLNDGMAPDP
VPVYIDEGAVEEGMTRDTVERFDIAYYLMLLHASGESKYSVVKTMFSAFA
STKDPLDYHIIWHQRAVLQALGTFNSNDLHVLDMGLVSQLLSVGKCHWAI
YVVLHMPYRDDFPNLQASVISEILFLYCETWSSQESQIQFIEELGIPPSW
MDEALFILLIVVICPKPLSIFCDVQTGKRHIQYL
Sequence Length: 
884
Sequence Checksum: 
ce0d514d958f7ab9da58f1cdd66af203
View location in JBrowse: 
DCARv2_Chr7:28423054..28426485-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017363076.1, derives from mRNA, XM_017363076.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017363076.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017363076.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HZ61 (Peptidase S59 domain-containing protein {ECO:0000259|PROSITE:PS51434})

HSP 1 Score: 1226.46 bits (3172), Expect = 0.000e+0
Identity = 589/863 (68.25%), Postives = 706/863 (81.81%), Query Frame = 0
 
Query:    1 MGFDLGSIDSFGLPVSESQCKKRKFVLNDTDASIVGKLPCSMDASLPTLLSCDYFMEPCLSEMATQELLNPGYCRRVRDFTVGRSGYGRVKFTGETDVRWLDLDHLVKFSRHELVVYEDESSKPVVGQGLNKEAEVTLVVQIRYRKD----GLIAFVKKLRLITERQGAEFISFDPSNGEWKFLVHHFSRFGLDEDDEEDITMDDAAPEVEEPHEISGGEVYGADDKNAIIDPTLLSHSLPSHLGLDPVKMRDMRMMMFSAEDEDEYSEEMNGSMSHQKQFFHNQSKRSPLKQASRRTVHRPSPPAIRKTPLALLEYNPGNFESSPPGSILMAQQNKGLSLKPTKLDGFKLDMKHDSPVTASHSRNVVDASLFMGRSFGVGWGPNGILVHAGAPVGNSNSREI-SSVVNLEKVAFDKVVRDENNQVSDDLIDFCFDSPLKFHMELKHETKEIGTGSCKLKLQKLVCDPLLLSDTCRGYIGITEEQLEVPGLTSYARVILMHQVQVWELIKVLFSLKESRARS-NVLEDSQDDTMQDRKDSDQDIDQEALELIRRAEFSYWLQESVCHRVQEELSSSDESNDLQQIFLLLTGRQLDAAVELSASRGDVRLACLLSQAGGSTVNRSDIFKQLEIWRNNGLDFNFIETDRTRLFELLAGNIHGALDGLNIDWKRFLGLLMWYNLPPETSLPAIFQTYQKLLNDGMAPDPVPVYIDEGAVEEGMTRDTVERFDIAYYLMLLHASGESKYSVVKTMFSAFASTKDPLDYHIIWHQRAVLQALGTFNSNDLHVLDMGLVSQLLSVGKCHWAIYVVLHMPYRDDFPNLQASVISEILFLYCETWSSQESQIQFIEELGIPPSWMDEALFI 857
            M FD+GS DS    V +SQ KKR+  LN+  +S   ++   ++ASLP L S DYFMEPCL E+ T+EL++PGYC RV+DFTVGR GYG VKF GETDVRWLDLD ++KFSRHE+VVYE+E +KPVVGQGLNK AEVTL +QIR   D     L    +KLR  TERQGA FISFDPSNGEWKFLVHHFSRFGL EDDEEDITMDD  PEV++P E++GGE+   D++ AI D TLLSHSLP+HLGLDPV+M++MRM++F AE+E+  +E++NG +SHQK  F  ++ RSPL+ ++R+T+HR SP  +RKTPLALLEYNP NF+SS PG+ILMAQQ+KGL LK TK++GFKLD+KH +PVT SHSRN+VDA+LFMGRSF VGWGPNG+LVH GAPVG+S+ R + SSV+NLEKVA DKVVRDENN+V ++L+DFCFDSPL  H E+ HET E+  GS K+KL KLV + L+LS+ CR YIGI E +LEVPGL+S ARV+LMHQV VWELIKVLFS +E   +S +V  D+++D M DRK+   ++D EAL LIRRAEFSYWLQESVCHRVQEE+SS +E NDL+ IFLLLTGRQLDAAVEL+ASRGDVRLACLLSQAGGSTVNRSDI +QLE+WR NGLDFNFIE DRTRL+ELLAGNIHGAL  + IDWKRFLGLLMWY LPP TSLP +F TYQ+LL+DG AP PV +YIDEG VEE +     E  D+ YYLMLLHAS E ++  +KTMFSA AST DPLDYH+IWHQRAVL+A+G   SNDLHVLDMGLVSQLL +G+CHWAIYVVLHMPYRDDFP LQA++I EILF YCE+WS+QE Q +FIE+LG+P +W+ EA+ +
Sbjct:    1 MDFDVGSFDS--QLVRQSQLKKRRISLNNVGSSSSCQVLSKINASLPALRSSDYFMEPCLRELVTRELIDPGYCCRVKDFTVGRLGYGCVKFIGETDVRWLDLDQIIKFSRHEVVVYEEEDAKPVVGQGLNKAAEVTLTLQIRTSTDCGEGQLREVARKLRHCTERQGACFISFDPSNGEWKFLVHHFSRFGLTEDDEEDITMDDVTPEVQDPLEMNGGEISDIDEEPAIADATLLSHSLPAHLGLDPVRMKEMRMLLFPAEEEE--AEDLNGRLSHQKVPFSKENTRSPLQNSTRKTIHRSSPTMVRKTPLALLEYNPSNFDSSSPGTILMAQQSKGLPLKTTKIEGFKLDLKHQTPVTGSHSRNIVDAALFMGRSFRVGWGPNGVLVHTGAPVGSSDPRRVLSSVINLEKVAIDKVVRDENNKVKEELVDFCFDSPLNLHKEINHETNEVEVGSFKIKLLKLVSNRLMLSEICRSYIGIIERKLEVPGLSSSARVVLMHQVMVWELIKVLFSAREMSGQSKSVGADNEEDMMHDRKEGSPEVDSEALPLIRRAEFSYWLQESVCHRVQEEVSSLNEPNDLEHIFLLLTGRQLDAAVELAASRGDVRLACLLSQAGGSTVNRSDIARQLELWRINGLDFNFIENDRTRLYELLAGNIHGALQDIQIDWKRFLGLLMWYQLPPNTSLPIVFHTYQQLLHDGRAPYPVSIYIDEGPVEEAVNWRGKEHLDLTYYLMLLHASEEVEFGTLKTMFSANASTYDPLDYHMIWHQRAVLEAVGAIRSNDLHVLDMGLVSQLLCLGQCHWAIYVVLHMPYRDDFPYLQATLIREILFQYCESWSTQELQREFIEDLGVPSAWLHEAMAV 859
[Close]
BLAST of XM_017363076.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AGZ2 ((Putative nuclear pore complex protein NUP96 isoform X1 {ECO:0000313|EMBL:MPA54343.1}))

HSP 1 Score: 1197.19 bits (3096), Expect = 0.000e+0
Identity = 586/863 (67.90%), Postives = 700/863 (81.11%), Query Frame = 0
 
Query:    1 MGFDLGSIDSFGLPVSESQCKKRKFVLNDTDASIVGKLPCSMDASLPTLLSCDYFMEPCLSEMATQELLNPGYCRRVRDFTVGRSGYGRVKFTGETDVRWLDLDHLVKFSRHELVVYEDESSKPVVGQGLNKEAEVTLVVQIR----YRKDGLIAFVKKLRLITERQGAEFISFDPSNGEWKFLVHHFSRFGLDEDDEEDITMDDAAPEVEEPHEISGGEVYGADDKNAIIDPTLLSHSLPSHLGLDPVKMRDMRMMMFSAEDEDEYSEEMNGSMSHQKQFFHNQSKRSPLKQASRRTVHRPSPPAIRKTPLALLEYNPGNFESSPPGSILMAQQNKGLSLKPTKLDGFKLDMKHDSPVTASHSRNVVDASLFMGRSFGVGWGPNGILVHAGAPVGNSN-SREISSVVNLEKVAFDKVVRDENNQVSDDLIDFCFDSPLKFHMELKHETKEIGTGSCKLKLQKLVCDPLLLSDTCRGYIGITEEQLEVPGLTSYARVILMHQVQVWELIKVLFSLKESRARS-NVLEDSQDDTMQDRKDSDQDIDQEALELIRRAEFSYWLQESVCHRVQEELSSSDESNDLQQIFLLLTGRQLDAAVELSASRGDVRLACLLSQAGGSTVNRSDIFKQLEIWRNNGLDFNFIETDRTRLFELLAGNIHGALDGLNIDWKRFLGLLMWYNLPPETSLPAIFQTYQKLLNDGMAPDPVPVYIDEGAVEEGMTRDTVERFDIAYYLMLLHASGESKYSVVKTMFSAFASTKDPLDYHIIWHQRAVLQALGTFNSNDLHVLDMGLVSQLLSVGKCHWAIYVVLHMPYRDDFPNLQASVISEILFLYCETWSSQESQIQFIEELGIPPSWMDEALFI 857
            M FD+G+  +F L VS+S  KKRK  LN TD+S   ++ C ++ASLPTL S DYF+ PCLSE+AT+EL++PGYC RV+DFTVGR GYG VKF GETDVR LDLD ++KF RH +VVYEDES+KPVVGQGLNK AEVTL +QIR    YR++ L   V+KL+L TERQGA FISFDPSNGEWKF VHHFSRFGL EDDEEDI MDD A EV+ P E++  EV   D++ AI+DP LLSHSLP+HLGLDPVKM++MRM+MF AEDE+  +E+ NG +SHQK  F  +  +SPL  ++ R +HR +PPA+RKTPL LLEYNP + +SS PG+ILMAQQNKGL LK TK++GFKL + H++PV  SHS N+VDA+LFMGRSF VGWGP+G+LVH G PVG+ +  R +SSV+NLEKVA DKVVRDENN+V ++LIDFCFDSPL  H  + HETKE+  GS KLKLQKLV + L+LS+ CR YIGI E QLEV GL+S   V+LMHQV VWELIKVLFS +E   +S +V  D++++ M DRK+   ++D EAL LIRRAEFSYWLQESVCHRVQ+E+SS +ES+DLQ IFLLLTGRQLD AVEL+ASRGDVRLACLLSQAGGST NRSDI +QL++WR NGLDFNFIE DR RL+ELLAGNIH AL  + +DWKRFLGLLMWY LPP+TSLP +F TYQ+LL DG AP P+PVYIDEG VEE       ER D+AYYLMLLHA+ E ++  +KTMFSAFAST DPLDYH+IWHQRAVL+A+GTF+SNDLHVLDMGLV QLL +GKCHWAIYVVLHMP+R+DFP LQA+VI EILF YCE WS+QESQ QFIEELGIP +W+ EA+ +
Sbjct:    1 MDFDVGT-SAFRL-VSQSHFKKRKISLNSTDSSSSCQVLCEIEASLPTLRSSDYFVRPCLSELATRELVDPGYCSRVQDFTVGRFGYGCVKFIGETDVRSLDLDQVIKFGRHAIVVYEDESAKPVVGQGLNKAAEVTLTLQIRSSTDYREEQLREVVRKLKLSTERQGACFISFDPSNGEWKFSVHHFSRFGLSEDDEEDIVMDDVAAEVQVPVEMNSSEVSDVDEETAIVDPILLSHSLPAHLGLDPVKMKEMRMLMFPAEDEE--TEDFNGMLSHQKLPFSEEYTKSPLLHSTWRMIHRSTPPAVRKTPLPLLEYNPASLDSSSPGTILMAQQNKGLHLKTTKVEGFKLALNHETPVIGSHSHNIVDAALFMGRSFRVGWGPSGVLVHTGVPVGSDDCQRLLSSVINLEKVAIDKVVRDENNKVREELIDFCFDSPLNLHKAINHETKEVEVGSFKLKLQKLVSNSLMLSEICRSYIGIVERQLEVSGLSSSTIVVLMHQVMVWELIKVLFSAREMSGQSKSVGADNEENMMHDRKEGSPEVDLEALPLIRRAEFSYWLQESVCHRVQDEVSSLNESSDLQHIFLLLTGRQLDVAVELAASRGDVRLACLLSQAGGSTFNRSDIARQLDLWRINGLDFNFIEKDRIRLYELLAGNIHDALLDIKVDWKRFLGLLMWYQLPPDTSLPNVFHTYQQLLGDGKAPYPLPVYIDEGPVEEAANWSAEERLDLAYYLMLLHANEECEFGALKTMFSAFASTHDPLDYHMIWHQRAVLEAVGTFSSNDLHVLDMGLVFQLLCLGKCHWAIYVVLHMPHREDFPYLQATVIREILFQYCEAWSTQESQRQFIEELGIPSAWLHEAMAV 859
[Close]
BLAST of XM_017363076.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AC81 ((Putative nuclear pore complex protein NUP96 isoform X1 {ECO:0000313|EMBL:MPA54342.1}))

HSP 1 Score: 1193.33 bits (3086), Expect = 0.000e+0
Identity = 582/863 (67.44%), Postives = 699/863 (81.00%), Query Frame = 0
 
Query:    1 MGFDLGSIDSFGLPVSESQCKKRKFVLNDTDASIVGKLPCSMDASLPTLLSCDYFMEPCLSEMATQELLNPGYCRRVRDFTVGRSGYGRVKFTGETDVRWLDLDHLVKFSRHELVVYEDESSKPVVGQGLNKEAEVTLVVQIR----YRKDGLIAFVKKLRLITERQGAEFISFDPSNGEWKFLVHHFSRFGLDEDDEEDITMDDAAPEVEEPHEISGGEVYGADDKNAIIDPTLLSHSLPSHLGLDPVKMRDMRMMMFSAEDEDEYSEEMNGSMSHQKQFFHNQSKRSPLKQASRRTVHRPSPPAIRKTPLALLEYNPGNFESSPPGSILMAQQNKGLSLKPTKLDGFKLDMKHDSPVTASHSRNVVDASLFMGRSFGVGWGPNGILVHAGAPVGNSN-SREISSVVNLEKVAFDKVVRDENNQVSDDLIDFCFDSPLKFHMELKHETKEIGTGSCKLKLQKLVCDPLLLSDTCRGYIGITEEQLEVPGLTSYARVILMHQVQVWELIKVLFSLKESRARS-NVLEDSQDDTMQDRKDSDQDIDQEALELIRRAEFSYWLQESVCHRVQEELSSSDESNDLQQIFLLLTGRQLDAAVELSASRGDVRLACLLSQAGGSTVNRSDIFKQLEIWRNNGLDFNFIETDRTRLFELLAGNIHGALDGLNIDWKRFLGLLMWYNLPPETSLPAIFQTYQKLLNDGMAPDPVPVYIDEGAVEEGMTRDTVERFDIAYYLMLLHASGESKYSVVKTMFSAFASTKDPLDYHIIWHQRAVLQALGTFNSNDLHVLDMGLVSQLLSVGKCHWAIYVVLHMPYRDDFPNLQASVISEILFLYCETWSSQESQIQFIEELGIPPSWMDEALFI 857
            M FD+G+  +F L VS+S  KKRK  LN TD+S   ++ C ++ASLPTL S DYF+ PCLSE+AT+EL++PGYC RV+DFTVGR GYG VKF GETDVR LDLD ++KF RH +VVYEDES+KPVVGQGLNK AEVTL +QIR    YR++ L   V+KL+L TERQGA FISFDPSNG+WKF VHHFSRFGL EDDEEDI MDD A EV+ P E++  EV   D++ AI+DP LLSHSLP+HLGLDPVKM++MRM+MF AEDE+  +E+ NG +SHQK  F  +  +SPL  ++ R +HR +PPA+RKTPL LLEYNP + +SS PG+ILMAQQNKGL LK TK++GFKL + H++PV  SHS N+VDA+LFMGRSF VGWGP+G+LVH G PVG+ +  R +SSV+NLEKVA DKVVRDENN+V ++LIDFCFDSPL  H  + HETKE+  GS KLKLQKLV + L+LS+ CR YIGI E QLEV GL+S   V+LMHQV VWELIKVLFS +E   +S +V  D++++ M DRK+   ++D EAL LIRRAEFSYWLQESVCHRVQ+E+SS +ES+DLQ IFLLLTGRQLD AVEL+ASRGDVRLACLLSQAGGST NRSDI +QL++WR NGLDFNFIE DR RL+ELLAGNIH AL  + +DWKRFLGLLMWY LPP+TSLP +F TYQ+LL DG AP P+PVYIDEG VEE       ER D+AYYLMLLHA+ E ++  +KTMFSAFAST DPLDYH+IWHQRAVL+A+GTF+SNDLHVLDMGLV QLL +GKCHWAIYVVLHMP+R+DFP LQA++I EILF YCE WS QESQ QFIE+LG+P +W+ EA+ +
Sbjct:    1 MDFDVGT-SAFRL-VSQSHFKKRKISLNSTDSSSSCQVLCEIEASLPTLRSSDYFVRPCLSELATRELVDPGYCSRVQDFTVGRFGYGCVKFIGETDVRSLDLDQVIKFGRHAIVVYEDESAKPVVGQGLNKAAEVTLTLQIRSSTDYREEQLREVVRKLKLSTERQGACFISFDPSNGDWKFSVHHFSRFGLSEDDEEDIVMDDVAAEVQVPVEMNSSEVSDVDEETAIVDPILLSHSLPAHLGLDPVKMKEMRMLMFPAEDEE--TEDFNGMLSHQKLPFSEEYTKSPLLHSTWRMIHRSTPPAVRKTPLPLLEYNPASLDSSSPGTILMAQQNKGLHLKTTKVEGFKLALNHETPVIGSHSHNIVDAALFMGRSFRVGWGPSGVLVHTGVPVGSDDCQRLLSSVINLEKVAIDKVVRDENNKVREELIDFCFDSPLNLHKAINHETKEVEVGSFKLKLQKLVSNSLMLSEICRSYIGIVERQLEVSGLSSSTIVVLMHQVMVWELIKVLFSAREMSGQSKSVGADNEENMMHDRKEGSPEVDLEALPLIRRAEFSYWLQESVCHRVQDEVSSLNESSDLQHIFLLLTGRQLDVAVELAASRGDVRLACLLSQAGGSTFNRSDIARQLDLWRINGLDFNFIEKDRIRLYELLAGNIHDALLDIKVDWKRFLGLLMWYQLPPDTSLPNVFHTYQQLLGDGKAPYPLPVYIDEGPVEEAANWSAEERLDLAYYLMLLHANEECEFGALKTMFSAFASTHDPLDYHMIWHQRAVLEAVGTFSSNDLHVLDMGLVFQLLCLGKCHWAIYVVLHMPHREDFPYLQATLIREILFQYCEAWSKQESQCQFIEDLGVPSAWLHEAMAV 859
[Close]
BLAST of XM_017363076.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AFT6 ((Putative nuclear pore complex protein NUP96 isoform X1 {ECO:0000313|EMBL:MPA54341.1}))

HSP 1 Score: 1191.41 bits (3081), Expect = 0.000e+0
Identity = 580/863 (67.21%), Postives = 695/863 (80.53%), Query Frame = 0
 
Query:    1 MGFDLGSIDSFGLPVSESQCKKRKFVLNDTDASIVGKLPCSMDASLPTLLSCDYFMEPCLSEMATQELLNPGYCRRVRDFTVGRSGYGRVKFTGETDVRWLDLDHLVKFSRHELVVYEDESSKPVVGQGLNKEAEVTLVVQIR----YRKDGLIAFVKKLRLITERQGAEFISFDPSNGEWKFLVHHFSRFGLDEDDEEDITMDDAAPEVEEPHEISGGEVYGADDKNAIIDPTLLSHSLPSHLGLDPVKMRDMRMMMFSAEDEDEYSEEMNGSMSHQKQFFHNQSKRSPLKQASRRTVHRPSPPAIRKTPLALLEYNPGNFESSPPGSILMAQQNKGLSLKPTKLDGFKLDMKHDSPVTASHSRNVVDASLFMGRSFGVGWGPNGILVHAGAPVGNSN-SREISSVVNLEKVAFDKVVRDENNQVSDDLIDFCFDSPLKFHMELKHETKEIGTGSCKLKLQKLVCDPLLLSDTCRGYIGITEEQLEVPGLTSYARVILMHQVQVWELIKVLFSLKESRARS-NVLEDSQDDTMQDRKDSDQDIDQEALELIRRAEFSYWLQESVCHRVQEELSSSDESNDLQQIFLLLTGRQLDAAVELSASRGDVRLACLLSQAGGSTVNRSDIFKQLEIWRNNGLDFNFIETDRTRLFELLAGNIHGALDGLNIDWKRFLGLLMWYNLPPETSLPAIFQTYQKLLNDGMAPDPVPVYIDEGAVEEGMTRDTVERFDIAYYLMLLHASGESKYSVVKTMFSAFASTKDPLDYHIIWHQRAVLQALGTFNSNDLHVLDMGLVSQLLSVGKCHWAIYVVLHMPYRDDFPNLQASVISEILFLYCETWSSQESQIQFIEELGIPPSWMDEALFI 857
            M FD+G+  S   PVS+ Q KKRK  L+   +S   ++   ++ASLPT  S DYF++PCLSE+AT+EL++PGYC RV DFTVGR GYG VKF GETDVR LDLD ++KF RH +VVYEDES+KPVVGQGLNK AEVTL +QI+    YR++ L   V+KL+L TERQGA FISFDPSNGEWKF VHHFSRFGL EDDEEDI MDD A EV+ P E++  EV   D++ AI+DP LLSHSLP+HLGLDPVKM++MRM+MF AEDE+  +E+ NG +SHQK  F  +  +SPL  ++ R +HR +PPA+RKTPL LLEYNP + +SS PG+ILMAQQNKGL LK TK++GFKL + H++PV  SHS N+VDA+LFMGRSF VGWGP+G+LVH G PVG+ +  R +SSV+NLEKVA DKVVRDENN+V ++LIDFCFDSPL  H  + HETKE+  GS KLKLQKLV + L+LS+ CR YIGI E QLEV GL+S   V+LMHQV VWELIKVLFS +E   +S +V  D++++ M DRK+   ++D EAL LIRRAEFSYWLQESVCHRVQ+E+SS +ES+DLQ IFLLLTGRQLD AVEL+ASRGDVRLACLLSQAGGST NRSDI +QL++WR NGLDFNFIE DR RL+ELLAGNIH AL  + +DWKRFLGLLMWY LPP+TSLP +F TYQ+LL DG AP P+PVYIDEG VEE       ER D+AYYLMLLHA+ E ++  +KTMFSAFAST DPLDYH+IWHQRAVL+A+GTF+SNDLHVLDMGLV QLL +GKCHWAIYVVLHMP+R+DFP LQA+VI EILF YCE WS+QESQ QFIEELGIP +W+ EA+ +
Sbjct:    1 MDFDVGTFVS--QPVSQFQYKKRKISLDSAGSSSSCQVLFEIEASLPTFQSYDYFIKPCLSELATRELIDPGYCSRVPDFTVGRLGYGCVKFIGETDVRSLDLDQVIKFGRHAIVVYEDESAKPVVGQGLNKAAEVTLTLQIKCSTDYREEQLREVVRKLKLSTERQGACFISFDPSNGEWKFSVHHFSRFGLSEDDEEDIVMDDVAAEVQVPVEMNSSEVSDVDEETAIVDPILLSHSLPAHLGLDPVKMKEMRMLMFPAEDEE--TEDFNGMLSHQKLPFSEEYTKSPLLHSTWRMIHRSTPPAVRKTPLPLLEYNPASLDSSSPGTILMAQQNKGLHLKTTKVEGFKLALNHETPVIGSHSHNIVDAALFMGRSFRVGWGPSGVLVHTGVPVGSDDCQRLLSSVINLEKVAIDKVVRDENNKVREELIDFCFDSPLNLHKAINHETKEVEVGSFKLKLQKLVSNSLMLSEICRSYIGIVERQLEVSGLSSSTIVVLMHQVMVWELIKVLFSAREMSGQSKSVGADNEENMMHDRKEGSPEVDLEALPLIRRAEFSYWLQESVCHRVQDEVSSLNESSDLQHIFLLLTGRQLDVAVELAASRGDVRLACLLSQAGGSTFNRSDIARQLDLWRINGLDFNFIEKDRIRLYELLAGNIHDALLDIKVDWKRFLGLLMWYQLPPDTSLPNVFHTYQQLLGDGKAPYPLPVYIDEGPVEEAANWSAEERLDLAYYLMLLHANEECEFGALKTMFSAFASTHDPLDYHMIWHQRAVLEAVGTFSSNDLHVLDMGLVFQLLCLGKCHWAIYVVLHMPHREDFPYLQATVIREILFQYCEAWSTQESQRQFIEELGIPSAWLHEAMAV 859
[Close]
BLAST of XM_017363076.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AC85 ((Putative nuclear pore complex protein NUP96 isoform X1 {ECO:0000313|EMBL:MPA54340.1}))

HSP 1 Score: 1185.63 bits (3066), Expect = 0.000e+0
Identity = 576/863 (66.74%), Postives = 697/863 (80.76%), Query Frame = 0
 
Query:    1 MGFDLGSIDSFGLPVSESQCKKRKFVLNDTDASIVGKLPCSMDASLPTLLSCDYFMEPCLSEMATQELLNPGYCRRVRDFTVGRSGYGRVKFTGETDVRWLDLDHLVKFSRHELVVYEDESSKPVVGQGLNKEAEVTLVVQIR----YRKDGLIAFVKKLRLITERQGAEFISFDPSNGEWKFLVHHFSRFGLDEDDEEDITMDDAAPEVEEPHEISGGEVYGADDKNAIIDPTLLSHSLPSHLGLDPVKMRDMRMMMFSAEDEDEYSEEMNGSMSHQKQFFHNQSKRSPLKQASRRTVHRPSPPAIRKTPLALLEYNPGNFESSPPGSILMAQQNKGLSLKPTKLDGFKLDMKHDSPVTASHSRNVVDASLFMGRSFGVGWGPNGILVHAGAPVGNSN-SREISSVVNLEKVAFDKVVRDENNQVSDDLIDFCFDSPLKFHMELKHETKEIGTGSCKLKLQKLVCDPLLLSDTCRGYIGITEEQLEVPGLTSYARVILMHQVQVWELIKVLFSLKESRARSNVL-EDSQDDTMQDRKDSDQDIDQEALELIRRAEFSYWLQESVCHRVQEELSSSDESNDLQQIFLLLTGRQLDAAVELSASRGDVRLACLLSQAGGSTVNRSDIFKQLEIWRNNGLDFNFIETDRTRLFELLAGNIHGALDGLNIDWKRFLGLLMWYNLPPETSLPAIFQTYQKLLNDGMAPDPVPVYIDEGAVEEGMTRDTVERFDIAYYLMLLHASGESKYSVVKTMFSAFASTKDPLDYHIIWHQRAVLQALGTFNSNDLHVLDMGLVSQLLSVGKCHWAIYVVLHMPYRDDFPNLQASVISEILFLYCETWSSQESQIQFIEELGIPPSWMDEALFI 857
            M FD+G+  S   PVS+ Q KKRK  L+   +S   ++   ++ASLPT  S DYF++PCLSE+AT+EL++PGYC RV DFTVGR GYG VKF GETDVR LDLD ++KF RH +VVYEDES+KPVVGQGLNK AEVTL +QIR    YR++ L   V+KL+L TERQGA FISFDPSNGEWKF VHHFSRFGL EDDEEDI MDD A EV+ P E++  EV   D++ AI+DP LLSHSLP+HLGLDPVKM++MRM+MF AEDE+  +E+ NG +SHQK  F  +  +SPL  ++ R +HR +PPA+RKTPL LLEYNP + +SS PG+ILMAQQNKGL LK TK++GFKL + H++PV  SHS N+VDA+LFMGRSF VGWGP+G+LVH G PVG+ +  R +SSV+NLEKVA DKVVRDENN+V ++LIDFCFDSPL  H  + HETKE+  GS KLKLQKLV + L+L + CR YIGI E+QLEVPGL+S  RV+LMHQV VWELIKVLFS +E   +S     D+++D M DRK+   +ID EAL LIRRAEFSYWLQESVCHRVQ+E+SS +ES+DL+ IFLLLTGRQLDAAVEL+ASRGDVRL CLLSQAGGSTVNRSDI +QL++WR NGLDFNFIE  R RL+ELLAGNIHGAL  + +DWKRFLGLLMWY LPP+TSLP +F+TYQ+LL+DG AP P+PVYIDEG  EE +     ER D+AYYLMLLHA+ + ++  +KTMFSAFAST DPLDYH+IWHQR+VL+A+GTF+SNDL VLDMGLVSQLL +G+CHWAIYVVLHMP+R+DFP LQA++I EILF YCE WS QESQ QFIE+LG+P +W+ EA+ +
Sbjct:    1 MDFDVGTFVS--QPVSQFQYKKRKISLDSAGSSSSCQVLFEIEASLPTFQSYDYFIKPCLSELATRELIDPGYCSRVPDFTVGRLGYGCVKFIGETDVRSLDLDQVIKFGRHAIVVYEDESAKPVVGQGLNKAAEVTLTLQIRSSTDYREEQLREVVRKLKLSTERQGACFISFDPSNGEWKFSVHHFSRFGLSEDDEEDIVMDDVAAEVQVPVEMNSSEVSDVDEETAIVDPILLSHSLPAHLGLDPVKMKEMRMLMFPAEDEE--TEDFNGMLSHQKLPFSEEYTKSPLLHSTWRMIHRSTPPAVRKTPLPLLEYNPASLDSSSPGTILMAQQNKGLHLKTTKVEGFKLALNHETPVIGSHSHNIVDAALFMGRSFRVGWGPSGVLVHTGVPVGSDDCQRLLSSVINLEKVAIDKVVRDENNKVREELIDFCFDSPLNLHKAINHETKEVEVGSFKLKLQKLVSNRLMLPEICRSYIGIIEKQLEVPGLSSSTRVVLMHQVMVWELIKVLFSTREMSGQSKSGGADNEEDMMHDRKEGPPEIDLEALPLIRRAEFSYWLQESVCHRVQDEVSSLNESSDLEHIFLLLTGRQLDAAVELAASRGDVRLGCLLSQAGGSTVNRSDIARQLDLWRINGLDFNFIEKGRIRLYELLAGNIHGALHDIKVDWKRFLGLLMWYQLPPDTSLPIVFRTYQQLLDDGRAPYPLPVYIDEGPAEEAVNWSLDERLDLAYYLMLLHANEQREFGSLKTMFSAFASTHDPLDYHMIWHQRSVLEAVGTFSSNDLQVLDMGLVSQLLCLGQCHWAIYVVLHMPHREDFPYLQATLIREILFQYCEAWSKQESQCQFIEDLGVPSAWLHEAMAV 859
[Close]
BLAST of XM_017363076.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XGI4 (Peptidase S59 domain-containing protein {ECO:0000259|PROSITE:PS51434})

HSP 1 Score: 1170.99 bits (3028), Expect = 0.000e+0
Identity = 571/863 (66.16%), Postives = 699/863 (81.00%), Query Frame = 0
 
Query:    1 MGFDLGSIDSFGLP-VSESQCKKRKFVLNDTDASIVGKLPCSMDASLPTLLSCDYFMEPCLSEMATQELLNPGYCRRVRDFTVGRSGYGRVKFTGETDVRWLDLDHLVKFSRHELVVYEDESSKPVVGQGLNKEAEVTLVVQI---RYRKDGLIAFVKKLRLITERQGAEFISFDPSNGEWKFLVHHFSRFGLDEDDEEDITMDDAAPEVEEPHEISGGEVYGADDKNAIIDPTLLSHSLPSHLGLDPVKMRDMRMMMFSAEDEDEYSEEMNGSMSHQKQFFHNQSKRSPLKQASRRTVHRPSPPAIRKTPLALLEYNPGNFESSPPGSILMAQQNKGLSLKPTKLDGFKLDMKHDSPVTASHSRNVVDASLFMGRSFGVGWGPNGILVHAGAPVGNS-NSREISSVVNLEKVAFDKVVRDENNQVSDDLIDFCFDSPLKFHMELKHETKEIGTGSCKLKLQKLVCDPLLLSDTCRGYIGITEEQLEVPGLTSYARVILMHQVQVWELIKVLFSLKESRARSNVLEDSQDDTM-QDRKDSDQDIDQEALELIRRAEFSYWLQESVCHRVQEELSSSDESNDLQQIFLLLTGRQLDAAVELSASRGDVRLACLLSQAGGSTVNRSDIFKQLEIWRNNGLDFNFIETDRTRLFELLAGNIHGALDGLNIDWKRFLGLLMWYNLPPETSLPAIFQTYQKLLNDGMAPDPVPVYIDEGAVEEGMTRDTVERFDIAYYLMLLHASGESKYSVVKTMFSAFASTKDPLDYHIIWHQRAVLQALGTFNSNDLHVLDMGLVSQLLSVGKCHWAIYVVLHMPYRDDFPNLQASVISEILFLYCETWSSQESQIQFIEELGIPPSWMDEALFI 857
            MG +L ++DSF    V++SQ KKRK +L+  D S    + C ++ SLPTL + DYFMEPCLSE+A +EL++PG+C RV++FTVGR GYG V+F GETDVRWLDLD ++KF RHE+VVYEDE++KPVVG+GLNK AEVTLV+QI   ++ ++G +  ++KLRL  ERQGA+FISFDP+  EWKF VHHFSRFGL +D+EED+ MDD   EV+EP   +  +    D++ A++DP LLSHSLPSHLGLDPV+M++MRMMMF AE+E E  EE++G  SH +  F  +  +SP++ AS +TV R SPPAIRKTPLALLEY PG+F SSP GSILM QQNKGL L  TK+ GFKL++K ++PVT SHSRN+VDA+LFMGRSF + WGPN +L+H G+  GNS   RE+SS +NLEKVA D V+RDENN+V ++LID CFDSPL FH EL HETKE+   S K+K+QKLVCD L LS  CR YIGI E+QLEVPGL+S ARV+LMHQV VWELIKVLFSL+E+  +SN +  + ++ M  + K+S  D D EAL LIRRAEFSYWLQESVCHRVQ+E+SS ++S+DLQ +FLLLTGRQLDAAVELSASRGDVRLACLLSQAGGSTVNR+DI +QL +W+ NGLDFNFIE DR RL ELLAGNIH AL G+NIDWKRFLGLLMWY LPP++ L +IFQ+YQ+LL DG AP PVPVYIDEG VE+G++    +RFD+AYYLMLLHA  E + S++KTMFSAFAST DPLD+H+IWHQRAVL+A+GTF+S+DLHVLDMGLVSQLL +G CHWAIY+VLHMPYRDD+P LQA VI EILF YCETWS+QE Q QFIEELG+P +W+ EAL +
Sbjct:    1 MGVNLDALDSFRQSLVAQSQFKKRKVILDSDDDSSACSVSCEIETSLPTLQASDYFMEPCLSELAMRELMDPGHCSRVQNFTVGRYGYGTVRFLGETDVRWLDLDQIIKFRRHEIVVYEDEAAKPVVGKGLNKAAEVTLVLQINSAKFSREGQV--IEKLRLSAERQGAKFISFDPNQREWKFSVHHFSRFGLSDDEEEDVAMDDVDAEVQEPVTNNDSDGSDLDEERALVDPRLLSHSLPSHLGLDPVRMKEMRMMMFPAEEE-EEDEELDGRFSHHRLPFGKEHMKSPIQHASSKTVQRSSPPAIRKTPLALLEYKPGSFASSPNGSILMTQQNKGLPLTITKVQGFKLELK-ETPVTGSHSRNIVDAALFMGRSFAIAWGPNDLLLHCGSTAGNSLQKRELSSTINLEKVAIDNVIRDENNKVREELIDLCFDSPLNFHKELNHETKEVVVDSYKIKVQKLVCDRLTLSRVCRSYIGIIEKQLEVPGLSSSARVVLMHQVLVWELIKVLFSLRETSEQSNSVGHNHEEYMLNNSKESSLDADDEALPLIRRAEFSYWLQESVCHRVQDEISSLNDSSDLQHLFLLLTGRQLDAAVELSASRGDVRLACLLSQAGGSTVNRTDIDRQLNLWKTNGLDFNFIEKDRIRLLELLAGNIHQALGGMNIDWKRFLGLLMWYQLPPDSDLTSIFQSYQRLLEDGRAPYPVPVYIDEGLVEDGVSWSPGDRFDLAYYLMLLHAREEKESSILKTMFSAFASTHDPLDHHMIWHQRAVLEAVGTFSSDDLHVLDMGLVSQLLCLGHCHWAIYIVLHMPYRDDYPYLQARVIREILFRYCETWSAQEKQRQFIEELGVPSAWLHEALAV 859
[Close]
BLAST of XM_017363076.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ADI0 ((Putative nuclear pore complex protein NUP96 isoform X1 {ECO:0000313|EMBL:MPA54344.1}))

HSP 1 Score: 1159.05 bits (2997), Expect = 0.000e+0
Identity = 580/867 (66.90%), Postives = 710/867 (81.89%), Query Frame = 0
 
Query:    1 MGFDLGSIDSFGLPVSESQCKKRKFVLNDTDASIVGKLPCSMDASLPTLLSCDYFMEPCLSEMATQELLNPGYCRRVRDFTVGRSGYGRVKFTGETDVRWLDLDHLVKFSRHELVVYEDESSKPVVGQGLNKEAEVTLVVQIR----YRKDGLIAFVKKLRLITERQGAEFISFDPSNGEWKFLVHHFSRFGLDEDDEEDITMDDAAPEVEEPHEISGGEVYGAD----DKNAIIDPTLLSHSLPSHLGLDPVKMRDMRMMMFSAEDEDEYSEEMNGSMSHQKQFFHNQSKRSPLKQASRRTVHRPSPPAIRKTPLALLEYNPGNFESSPPGSILMAQQNKGLSLKPTKLDGFKLDMKHDSPVTASHSRNVVDASLFMGRSFGVGWGPNGILVHAGAPVGNSNSREI-SSVVNLEKVAFDKVVRDENNQVSDDLIDFCFDSPLKFHMELKHETKEIGTGSCKLKLQKLVCDPLLLSDTCRGYIGITEEQLEVPGLTSYARVILMHQVQVWELIKVLFSLKESRARSNVL-EDSQDDTMQDRKDSDQDIDQEALELIRRAEFSYWLQESVCHRVQEELSSSDESNDLQQIFLLLTGRQLDAAVELSASRGDVRLACLLSQAGGSTVNRSDIFKQLEIWRNNGLDFNFIETDRTRLFELLAGNIHGALDGLNIDWKRFLGLLMWYNLPPETSLPAIFQTYQKLLNDGMAPDPVPVYIDEGAVEEGMTRDTVERFDIAYYLMLLHASGESKYSVVKTMFSAFASTKDPLDYHIIWHQRAVLQALGTFNSNDLHVLDMGLVSQLLSVGKCHWAIYVVLHMPYRDDFPNLQASVISEILFLYCETWSSQESQIQFIEELGIPPSWMDEALFI 857
            M FD+G+  +F L VS+S  KKRK  LN TD+S   ++ C ++ASLPTL S DYF+ PCLSE+AT+EL++PGYC RV+DFTVGR GYG VKF GETDVR LDLD ++KF RH +VVYEDES+KPVVGQGLNK AEVTL +QIR    YR++ L   V+KLRL TERQGA FISFD SNG+WKF VHHFSRFGL EDDEEDI MDD A EV++P E++GGE+  AD    ++ AI+DPTLLSHSLP+HLGLDPVKM++MRM+MF A++E+  +++ NG  S+QK  F  +  +SPL+ +++  +HR SPP +RKTPLALLEYNPG+F+ S PG+ILMAQQNKGL L+ TK++GFK+ +K+++PVT S+SRN+VDASLFMGRSF VGWGPNG+LVH GAPVG+ + R + SS +NLEKVA DKVVRDENN+V ++L+DFCF SPL  H E+ HETKE+  GS KLKLQKLV + L+L + CR YIGI E+QLEVPGL+S  RV+LMHQV VWELIKVLFS +E   +S     D+++D M DRK+   +ID EAL LIRRAEFSYWLQESVCHRVQ+E+SS +ES+DL+ IFLLLTGRQLDAAVEL+ASRGDVRL CLLSQAGGSTVNRSDI +QL++WR NGLDFNFIE  R RL+ELLAGNIHGAL  + +DWKRFLGLLMWY LPP+TSLP +F+TYQ+LL+DG AP P+PVYIDEG  EE +     ER D+AYYLMLLHA+ + ++  +KTMFSAFAST DPLDYH+IWHQR+VL+A+GTF+SNDL VLDMGLVSQLL +G+CHWAIYVVLHMP+R+DFP LQA++I EILF YCE WS QESQ QFIE+LG+P +W+ EA+ +
Sbjct:    1 MDFDVGT-SAFRL-VSQSHFKKRKISLNSTDSSSSCQVLCEIEASLPTLRSSDYFVRPCLSELATRELVDPGYCSRVQDFTVGRFGYGCVKFIGETDVRSLDLDQVIKFGRHAIVVYEDESAKPVVGQGLNKAAEVTLTLQIRSSTDYREEQLREVVRKLRLSTERQGACFISFDLSNGKWKFSVHHFSRFGLSEDDEEDIIMDDVAAEVQDPVEMNGGEISDADVDVDEEAAIVDPTLLSHSLPAHLGLDPVKMKEMRMLMFPADEEE--TDDFNGMPSNQKLPFSKEYTKSPLQHSTQMVIHRSSPPIVRKTPLALLEYNPGSFDLSSPGTILMAQQNKGLPLRTTKVEGFKMVLKNETPVTGSYSRNLVDASLFMGRSFRVGWGPNGVLVHTGAPVGSDDPRRVLSSAINLEKVAIDKVVRDENNKVREELVDFCFYSPLNLHKEINHETKEVEVGSFKLKLQKLVSNRLMLPEICRSYIGIIEKQLEVPGLSSSTRVVLMHQVMVWELIKVLFSTREMSGQSKSGGADNEEDMMHDRKEGPPEIDLEALPLIRRAEFSYWLQESVCHRVQDEVSSLNESSDLEHIFLLLTGRQLDAAVELAASRGDVRLGCLLSQAGGSTVNRSDIARQLDLWRINGLDFNFIEKGRIRLYELLAGNIHGALHDIKVDWKRFLGLLMWYQLPPDTSLPIVFRTYQQLLDDGRAPYPLPVYIDEGPAEEAVNWSLDERLDLAYYLMLLHANEQREFGSLKTMFSAFASTHDPLDYHMIWHQRSVLEAVGTFSSNDLQVLDMGLVSQLLCLGQCHWAIYVVLHMPHREDFPYLQATLIREILFQYCEAWSKQESQRQFIEDLGVPSAWLHEAMAV 863
[Close]
BLAST of XM_017363076.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0H2H1 ((Similar to SUPPRESSOR OF AUXIN RESISTANCE 3 {ECO:0000313|EMBL:GFZ17232.1}))

HSP 1 Score: 1155.2 bits (2987), Expect = 0.000e+0
Identity = 572/863 (66.28%), Postives = 693/863 (80.30%), Query Frame = 0
 
Query:    1 MGFDLGSIDSFGLPVSESQCKKRKFVLNDTDASIVGKLPCSMDASLPTLLSCDYFMEPCLSEMATQELLNPGYCRRVRDFTVGRSGYGRVKFTGETDVRWLDLDHLVKFSRHELVVYEDESSKPVVGQGLNKEAEVTLVVQIR----YRKDGLIAFVKKLRLITERQGAEFISFDPSNGEWKFLVHHFSRFGLDEDDEEDITMDDAAPEVEEPHEISGGEVYGADDKNAIIDPTLLSHSLPSHLGLDPVKMRDMRMMMFSAEDEDEYSEEMNGSMSHQKQFFHNQSKRSPLKQASRRTVHRPSPPAIRKTPLALLEYNPGNFESSPPGSILMAQQNKGLSLKPTKLDGFKLDMKHDSPVTASHSRNVVDASLFMGRSFGVGWGPNGILVHAGAPVGNSN-SREISSVVNLEKVAFDKVVRDENNQVSDDLIDFCFDSPLKFHMELKHETKEIGTGSCKLKLQKLVCDPLLLSDTCRGYIGITEEQLEVPGLTSYARVILMHQVQVWELIKVLFSLKESRAR-SNVLEDSQDDTMQDRKDSDQDIDQEALELIRRAEFSYWLQESVCHRVQEELSSSDESNDLQQIFLLLTGRQLDAAVELSASRGDVRLACLLSQAGGSTVNRSDIFKQLEIWRNNGLDFNFIETDRTRLFELLAGNIHGALDGLNIDWKRFLGLLMWYNLPPETSLPAIFQTYQKLLNDGMAPDPVPVYIDEGAVEEGMTRDTVERFDIAYYLMLLHASGESKYSVVKTMFSAFASTKDPLDYHIIWHQRAVLQALGTFNSNDLHVLDMGLVSQLLSVGKCHWAIYVVLHMPYRDDFPNLQASVISEILFLYCETWSSQESQIQFIEELGIPPSWMDEALFI 857
            M FD+G+ DS  L    SQ KKR+   N  D+    ++   ++ SLPTL S DYFM+P LSE+AT+ELL+PGYC RV+D  VGR GYG V F GETDVRWLD D ++KFSRHE+VVYEDES+KPVVGQGLNK AEVTL+VQIR    Y K+ L    +KLRL +ERQGA FISFDPSN EWKF VHHFSRFGL EDDEEDI MDDA  E+ +P E++GGEV   D++ A  D  LLSHSLP+HLGLDPV++++MRM+MF AE+E+   E+ NGS+S QK+  + ++  SPL+ ++R+ VHR SP  +RKTPLALLEYNP NF+SS PG+ILMAQQNKGL LK TKL+GFKLD+KH++PV+  HS N+VDA+LFMGRSF VGWGPNG LVH GAPVG+++  R +SSV+N+EKVA DKVVRDE+N+V ++LI+FCFD+PL  H ++ HETKE+  GS K+KL K VC   +LS+ CR +IGI E  LEVPGL+S ARV+LMHQV VWELIKVLFS  E   +   V  D++++ M DRK+   ++D EAL LIRRAEFSYWLQESVCH+VQ+E+SS  ESNDL+ IFLLLTGRQLDAAVEL+ASRGDVRLACLLSQAGGS VNRSDI +QL++WRNN LDFNFIE DR RL+ELLAGNI GAL  + +DWKRFLGLLMW+ LPP+TSLP +F TYQ+LL+DG AP PVPVYIDEG VEE +  +  ERFD+AYYLMLLHAS ESK+  +KTMFS +AST DPLDYH+IWHQRAVL+A GTF SNDLHVLDMGLVSQLL +G+CHWA+YVVLHMP+RDDFP LQA++I EILF YCE WS+QE Q QFIE+LG+P +W+ EA+ +
Sbjct:    1 MEFDVGTSDSQLL--CHSQNKKRRISTNSIDSCSSCEVLSEINTSLPTLRSSDYFMDPSLSELATRELLDPGYCSRVKDLIVGRLGYGYVTFIGETDVRWLDFDQIIKFSRHEVVVYEDESTKPVVGQGLNKAAEVTLMVQIRSSTDYGKEQLREVARKLRLCSERQGACFISFDPSNCEWKFSVHHFSRFGLTEDDEEDIIMDDATAEIRDPLEMNGGEVSDIDEEPAATDSILLSHSLPAHLGLDPVRVKEMRMLMFPAEEEE--VEDFNGSLSLQKRPLNKENSISPLQSSARKMVHRSSPTIVRKTPLALLEYNPCNFDSSSPGTILMAQQNKGLPLKTTKLEGFKLDLKHETPVSGRHSCNIVDAALFMGRSFRVGWGPNGTLVHTGAPVGSNDLQRVLSSVINVEKVAIDKVVRDESNKVREELIEFCFDAPLNLHKDINHETKEVEVGSFKIKLLKPVCTRSMLSEICRSHIGIIERHLEVPGLSSSARVVLMHQVMVWELIKVLFSDTEMSGQLKPVGADNEEEMMNDRKEVSPEVDSEALPLIRRAEFSYWLQESVCHKVQDEVSSLGESNDLEHIFLLLTGRQLDAAVELAASRGDVRLACLLSQAGGSMVNRSDIARQLDLWRNNDLDFNFIEKDRIRLYELLAGNIQGALQDIQVDWKRFLGLLMWHQLPPDTSLPIVFHTYQELLDDGRAPYPVPVYIDEGPVEEAVNWNIGERFDLAYYLMLLHASKESKFGALKTMFSTYASTYDPLDYHMIWHQRAVLEAAGTFTSNDLHVLDMGLVSQLLCLGQCHWAVYVVLHMPHRDDFPYLQATLIREILFQYCEAWSTQELQRQFIEDLGVPSAWLHEAMAV 859
[Close]
BLAST of XM_017363076.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PDA6 ((Nuclear pore complex protein {ECO:0000313|EMBL:PSR89350.1}))

HSP 1 Score: 1147.88 bits (2968), Expect = 0.000e+0
Identity = 568/863 (65.82%), Postives = 692/863 (80.19%), Query Frame = 0
 
Query:    1 MGFDLGSIDSFGLPVSESQCKKRKFVLNDTDASIVGKLPCSMDASLPTLLSCDYFMEPCLSEMATQELLNPGYCRRVRDFTVGRSGYGRVKFTGETDVRWLDLDHLVKFSRHELVVYEDESSKPVVGQGLNKEAEVTLVVQIR----YRKDGLIAFVKKLRLITERQGAEFISFDPSNGEWKFLVHHFSRFGLDEDDEEDITMDDAAPEVEEPHEISGGEVYGADDKNAIIDPTLLSHSLPSHLGLDPVKMRDMRMMMFSAEDEDEYSEEMNGSMSHQKQFFHNQSKRSPLKQASRRTVHRPSPPAIRKTPLALLEYNPGNFESSPPGSILMAQQNKGLSLKPTKLDGFKLDMKHDSPVTASHSRNVVDASLFMGRSFGVGWGPNGILVHAGAPVGNSN-SREISSVVNLEKVAFDKVVRDENNQVSDDLIDFCFDSPLKFHMELKHETKEIGTGSCKLKLQKLVCDPLLLSDTCRGYIGITEEQLEVPGLTSYARVILMHQVQVWELIKVLFSLKESRAR-SNVLEDSQDDTMQDRKDSDQDIDQEALELIRRAEFSYWLQESVCHRVQEELSSSDESNDLQQIFLLLTGRQLDAAVELSASRGDVRLACLLSQAGGSTVNRSDIFKQLEIWRNNGLDFNFIETDRTRLFELLAGNIHGALDGLNIDWKRFLGLLMWYNLPPETSLPAIFQTYQKLLNDGMAPDPVPVYIDEGAVEEGMTRDTVERFDIAYYLMLLHASGESKYSVVKTMFSAFASTKDPLDYHIIWHQRAVLQALGTFNSNDLHVLDMGLVSQLLSVGKCHWAIYVVLHMPYRDDFPNLQASVISEILFLYCETWSSQESQIQFIEELGIPPSWMDEALFI 857
            M FD+G+ DS  L    SQ KKR+   N  D+    ++   ++ASLPTL S DYFMEP LSE+AT+EL++PGYC RV+D  VGR GYG V F GETDVRWLD D ++KFSRHE+VVYEDES+KPVVGQGLNK AEVTL+VQIR    Y K+ L    KKLRL +ERQGA FISFDPSN EWKF VHHFSRFGL EDDEEDI MDDA  E+ +P E+SGGEV   D++ A  D  LLSHSLP+HLGLDPV++++MRM+MF AE+E+   E+ NGS+S QK+  + ++  SPL+ ++R+ VHR SP  +RKTPLALLEYNP NF+SS PG+ILMAQQ+KGL LK TKL+GFKLD+KH++PV+  HS N+VDA+LFMGRSF VGWGPNG LVH GAPVG+++  R +SSV+N+EKVA DKVVRDE+N+V ++LI+FCFD+PL  H ++ HETKE+  GS K+KL K VC   +LS+ CR +IGI E  LEVPGL+S AR++LMHQV VWELIKVLFS  E   +   V  +++++ M DRK+   ++D EAL LIRRAEFSYWLQESVCH+VQ+E+SS  ESNDL+ I LLLTGRQLD AVEL++SRGDVRLACLLSQAGGS VNRSDI +QL++WRNN LDFNFIE DR RL+ELLAGNI GAL  + +DWKRFLGLLMW+ LPP+TSLP +F TYQ+LL+DG AP PVPVYIDEG VEE +  +  ERFD+AYYLMLLHAS ESK+  +KTMFS +AST DPLDYH+IWHQRAVL+A GTF SNDLHVLDMGLVSQLL +G+CHWAIYVVLHMP+R+DFP LQA++I EILF YCE WS+QE Q +FIE+LG+P +W+ EA+ +
Sbjct:    1 MEFDVGTSDSQLL--CHSQNKKRRISTNSIDSCSSCEVLSEINASLPTLRSSDYFMEPSLSELATRELIDPGYCSRVKDLIVGRLGYGYVTFIGETDVRWLDFDQIIKFSRHEVVVYEDESTKPVVGQGLNKAAEVTLMVQIRSSTDYGKEQLREVAKKLRLCSERQGACFISFDPSNCEWKFSVHHFSRFGLTEDDEEDIIMDDATAEIRDPLEMSGGEVSDIDEEPAATDSILLSHSLPAHLGLDPVRVKEMRMLMFPAEEEE--VEDFNGSLSLQKRPLNKENSISPLQSSARKMVHRSSPTIVRKTPLALLEYNPCNFDSSSPGTILMAQQHKGLPLKTTKLEGFKLDLKHETPVSGRHSCNIVDAALFMGRSFRVGWGPNGTLVHTGAPVGSNDLQRVLSSVINVEKVAIDKVVRDESNKVREELIEFCFDAPLNLHKDINHETKEVEVGSFKIKLLKPVCTRSMLSEICRSHIGIIERHLEVPGLSSSARIVLMHQVMVWELIKVLFSDTEMSGQLKPVGAENEEEMMNDRKEVSPEVDSEALPLIRRAEFSYWLQESVCHKVQDEVSSLGESNDLEHILLLLTGRQLDTAVELASSRGDVRLACLLSQAGGSMVNRSDIARQLDLWRNNDLDFNFIEKDRIRLYELLAGNIQGALQDIQVDWKRFLGLLMWHQLPPDTSLPIVFHTYQELLDDGRAPYPVPVYIDEGPVEEAVNWNIGERFDLAYYLMLLHASKESKFGALKTMFSTYASTYDPLDYHMIWHQRAVLEAAGTFTSNDLHVLDMGLVSQLLCLGQCHWAIYVVLHMPHREDFPYLQATLIREILFQYCEAWSTQELQRRFIEDLGVPSAWLHEAMAV 859
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BLAST of XM_017363076.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4M8X7 (Peptidase S59 domain-containing protein {ECO:0000259|PROSITE:PS51434} (Fragment))

HSP 1 Score: 1142.87 bits (2955), Expect = 0.000e+0
Identity = 555/847 (65.53%), Postives = 679/847 (80.17%), Query Frame = 0
 
Query:   17 ESQCKKRKFVLNDTDASIVGKLPCSMDASLPTLLSCDYFMEPCLSEMATQELLNPGYCRRVRDFTVGRSGYGRVKFTGETDVRWLDLDHLVKFSRHELVVYEDESSKPVVGQGLNKEAEVTLVVQIR----YRKDGLIAFVKKLRLITERQGAEFISFDPSNGEWKFLVHHFSRFGLDEDDEEDITMDDAAPEVEEPHEISGGEVYGADDKNAIIDPTLLSHSLPSHLGLDPVKMRDMRMMMFSAEDEDEYSEEMNGSMSHQKQFFHNQSKRSPLKQASRRTVHRPSPPAIRKTPLALLEYNPGNFESSPPGSILMAQQNKGLSLKPTKLDGFKLDMKHDSPVTASHSRNVVDASLFMGRSFGVGWGPNGILVHAGAPVGNSN-SREISSVVNLEKVAFDKVVRDENNQVSDDLIDFCFDSPLKFHMELKHETKEIGTGSCKLKLQKLVCDPLLLSDTCRGYIGITEEQLEVPGLTSYARVILMHQVQVWELIKVLFSLKESRARSNVL-EDSQDDTMQDRKDSDQDIDQEALELIRRAEFSYWLQESVCHRVQEELSSSDESNDLQQIFLLLTGRQLDAAVELSASRGDVRLACLLSQAGGSTVNRSDIFKQLEIWRNNGLDFNFIETDRTRLFELLAGNIHGALDGLNIDWKRFLGLLMWYNLPPETSLPAIFQTYQKLLNDGMAPDPVPVYIDEGAVEEGMTRDTVERFDIAYYLMLLHASGESKYSVVKTMFSAFASTKDPLDYHIIWHQRAVLQALGTFNSNDLHVLDMGLVSQLLSVGKCHWAIYVVLHMPYRDDFPNLQASVISEILFLYCETWSSQESQIQFIEELGIPPSWMDEALFI 857
            ESQ KKR+  L+  D+S+  ++   ++ASLPTL S DYF+EPCLSE+AT+EL++PGYC RV+D  VGR GYG VKFTGETDVR L+L+ ++KFSRHE+VVYEDES+KP VGQGLNK AEVTL +QIR    Y K+      +KLRL TERQGA FISF+PSNGEWKFLVHHFSRFGL  D+EED+ +DDA  E +   E+ GGEV   D++ A  D T LSHSLPSHLGLDPV+M++MRM+MF +E+E+   E+++G  SHQK  F   + RSPL+ ++ + +HR SP  +RKTPLALLEY PGN+ESS  G+IL+AQQNKG+ LK TK +GF+LD++H++PVT SHS N+VDA+LFMGRSF VGWGPNG+LVH GAPVG+S+  R +SSV+N+EKVA DKVVRDENN+V  +L +FCFDSPL  H E+ HE+KE+  GS K+KL KLV + L+L + CR YIGI E+QLEVPGL+S ARV+LMHQV VWELIKVLFS +E   + N++  D+++D M DRK+   ++D EAL LIRRAEFSYWLQE VCHRVQEE+SS +ESNDL+ IFLLLTGRQLD AVEL+ASRGDVRLACLLSQAGGSTVN  D+ +QLE+WR NGLDFNFIE DR RL+ELLAGNI GAL  + +DWKRFLGLLMW+ L P TSL  +F TYQ+LL DG AP PVPVYIDEG +EE    DT E  D+AYYLMLLHAS + K+  +KTMFSA+AST DPLDYH+IWHQRAVL+A+G F+SNDLHVLDMGLVSQLL +G+CHWAIYVVLHM +RDDFP L A++I EILF YCE W +QE Q QFIE+LG+P +W+ EA+ +
Sbjct:   15 ESQNKKRRISLDSIDSSLSCEVLSEINASLPTLQSSDYFIEPCLSELATRELIHPGYCSRVKDLKVGRLGYGYVKFTGETDVRSLNLNEIIKFSRHEVVVYEDESTKPEVGQGLNKAAEVTLTLQIRSSTDYGKERYREVARKLRLSTERQGACFISFEPSNGEWKFLVHHFSRFGLSGDEEEDMIVDDATAEGQGLEEMRGGEVSXIDEEPATSDSTPLSHSLPSHLGLDPVRMKEMRMLMFPSEEEE--VEDLHGRFSHQKVAFSKDNLRSPLQDSASKMIHRSSPTVVRKTPLALLEYKPGNYESSSFGTILLAQQNKGMPLKTTKREGFRLDLEHETPVTGSHSXNIVDAALFMGRSFRVGWGPNGMLVHTGAPVGSSDPQRVLSSVINVEKVAIDKVVRDENNKVGKELTEFCFDSPLNLHKEINHESKEVKVGSFKIKLLKLVSNRLMLPEICRSYIGIIEKQLEVPGLSSSARVVLMHQVMVWELIKVLFSDREMSGQLNLVGADNEEDMMNDRKEESPEVDSEALPLIRRAEFSYWLQECVCHRVQEEVSSLNESNDLEHIFLLLTGRQLDPAVELAASRGDVRLACLLSQAGGSTVNXHDMARQLELWRINGLDFNFIEKDRIRLYELLAGNIEGALQDIQVDWKRFLGLLMWHQLQPNTSLHIVFHTYQQLLEDGRAPYPVPVYIDEGPLEEAANIDTGEHLDLAYYLMLLHASEKGKFGALKTMFSAYASTYDPLDYHMIWHQRAVLEAVGAFSSNDLHVLDMGLVSQLLCMGQCHWAIYVVLHMDHRDDFPYLHANLIREILFQYCEAWCTQELQCQFIEDLGVPAAWLHEAMAV 859
Match NameStatsDescription
A0A7J7HZ61E-Value: 0.000e+0, PID: 68.25Peptidase S59 domain-containing protein {ECO:00002... [more]
A0A5B7AGZ2E-Value: 0.000e+0, PID: 67.90(Putative nuclear pore complex protein NUP96 isofo... [more]
A0A5B7AC81E-Value: 0.000e+0, PID: 67.44(Putative nuclear pore complex protein NUP96 isofo... [more]
A0A5B7AFT6E-Value: 0.000e+0, PID: 67.21(Putative nuclear pore complex protein NUP96 isofo... [more]
A0A5B7AC85E-Value: 0.000e+0, PID: 66.74(Putative nuclear pore complex protein NUP96 isofo... [more]
A0A103XGI4E-Value: 0.000e+0, PID: 66.16Peptidase S59 domain-containing protein {ECO:00002... [more]
A0A5B7ADI0E-Value: 0.000e+0, PID: 66.90(Putative nuclear pore complex protein NUP96 isofo... [more]
A0A7J0H2H1E-Value: 0.000e+0, PID: 66.28(Similar to SUPPRESSOR OF AUXIN RESISTANCE 3 {ECO:... [more]
A0A2R6PDA6E-Value: 0.000e+0, PID: 65.82(Nuclear pore complex protein {ECO:0000313|EMBL:PS... [more]
A0A6A4M8X7E-Value: 0.000e+0, PID: 65.53Peptidase S59 domain-containing protein {ECO:00002... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.