MTTDSTPPPPLTSDDHPSTTTSNPRPPDYATSISNLRSFATALSTFQRRY
DELQQHLDFIQTTIHSQIPDPSIIPPFIPPTPPSPIAINLDKNPKLLSNS
DVEPKIKIEADIRVATTIPDKKQAVVEVSESKPEIKLPDSGLEHKSDDKA
TDCGEKSDVGVIMDDTQSELLRLCSKTMCGRSLRRYIVTHISDGDRLREE
VPKALKCAANPAKLVLECVGKFYLQGSRAFNKSSLMLAGRDASIITLECF
LLMERDGVVIDNGVKEEAHNAAVAWRKRLRGEGGLYKACEADARGLLFLI
GGYGIPKSFEVEDIKDLTRACKLQDISGALRRSRYLLARIPELIEQMLKY
KREVEALNIVYTFDVKDKYPPQTILKSFLSKSDEILKRKRTEAADLSTLV
IKDKKHLDDLKSLLRCWKNHKIDPSKTFPDLDINEKISSLEREITVLDKK
VREDVANKKKEKEVESSKRSKTQDAKRPRFPGHDLPLQGAVGQSDDNNSV
DKLTQMNYNGGLPEHYGYSASPSQRHESGVRDIHATRMLHEYSDVTMVQP
RTDRVGLLHEYAASTRFGSGGGVVAADETEGGYISRVPYATSHLGMHSNV
NPYTGQLFGRHMDALSNDRYASQTYAGKPLYSGYNDLHRPSPALEGFAGL
PSYPKAGSSIRSSGSDLYHFADSVLESELKQKSGAPSGAQLRRG
| Relationships |
|---|
| The polypeptide, XM_017359666.1, derives from mRNA, XM_017359666.1. |

Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A6L5B6Z0 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})
HSP 1 Score: 541.576 bits (1394), Expect = 0.000e+0
Identity = 285/363 (78.51%), Postives = 312/363 (85.95%), Query Frame = 0
Query: 333 SRYLLARIPELIEQMLKYKREVEALNIVYTFDVKDKYPPQTILKSFLSKSDEILKRKRTEAADLSTLVIKDKKHLDDLKSLLRCWKNHKIDPSKTFPDLDINEKISSLEREITVLDKKVREDVANKKKEKEVESSKRSKTQDAKRPRFPGHDLPLQGAVGQSDDNNSVDKLTQMNYNGGLPEHYGYSASPSQRHESGVRDIHATRMLHEYSDVTMVQPR--TDRVGLLHEYAASTRFGSGGGVVAADETEGGYISRVPYATSHLGMHSNVNPYTGQLFGRHMDALSNDRYASQTYAGKPLYSGYNDLHRPSPALEGFAGLPSYPKAGSSIRSSGSDLYHFADSVLESELKQKSGAPSGAQLRR 693
SR+LLARIPE+IE+MLKYKREVEALNIVYTFDV+DKYPPQTILKS LSKSDEILKRKRTEA DLS +VIKDKKHLDDLKSLLRCWKNHKIDPSK FPDL +NEKISSLE+EI VLDKK+RE++A KKKEKEVESSKR KTQDAKR RFPGHD PLQGAV QS +N L+QMNYNGGLP YGY+AS S HESG+ D+HATR+LHEYS+V MV PR DR GLLHEYAASTRFGSGGG+VAA ETEGGY+ R PYA SHLG H N+NPY GQ +GRH DA+S++R+ASQ YA K LYS YN LHR SPALEGFAGLP+ P AGSSI SSGSDLYHFADSVLESEL+ K APSGA LRR
Sbjct: 10 SRHLLARIPEIIERMLKYKREVEALNIVYTFDVQDKYPPQTILKSLLSKSDEILKRKRTEAEDLSAVVIKDKKHLDDLKSLLRCWKNHKIDPSKAFPDLAVNEKISSLEKEINVLDKKLREEIAKKKKEKEVESSKRLKTQDAKRLRFPGHDSPLQGAVRQSAENIPFG-LSQMNYNGGLPGQYGYNASSSVLHESGLGDLHATRILHEYSNVPMVVPRGSADRAGLLHEYAASTRFGSGGGLVAA-ETEGGYLFREPYAASHLGTHINMNPYNGQPYGRHEDAVSDERFASQIYARKSLYSEYNGLHRSSPALEGFAGLPNRPTAGSSIPSSGSDLYHFADSVLESELRHKDSAPSGANLRR 370
Match: A0A4V3WK29 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})
HSP 1 Score: 451.825 bits (1161), Expect = 5.676e-147
Identity = 296/750 (39.47%), Postives = 412/750 (54.93%), Query Frame = 0
Query: 1 MTTDSTPPPPLTSDDHPS-----------------TTTSNPRPPDYATSISNLRSFATALSTFQRRYDELQQHLDFIQTTIHSQI-----PDPSI-IPPF-------IPPTPPSPIAINLDKN-----PKLLSNSDVEPKIK-IEADIRVATTIPDKKQAVVEVSESKPEIKLPDSGLEHKSDDKATDCGEKSDVGVI------MDDTQSEL--LRLCSKTMCGRSLRRYIVTHISDGDRLREEVPKALKCAANPAKLVLECVGKFYLQGSRAFNKSSLMLAGRDASIITLECFLLMERDGVVIDNGVKEEAHNAAVAWRKRLRGEGGLYKACEADARGLLFLIGGYGIPKSFEVEDIKDLTRACKLQDISGALRRSRYLLARIPELIEQMLKYKREVEALNIVYTFDVKDKYPPQTILKSFLSKSDEILKRKRTEAADLSTLVIK-DKKHLDDLKSLLRCWKNHKIDPSKTFPDLDINEKISSLEREITVLDKKVREDVANKKKEKEVESSKRSKTQDAKRPRFPGHDLPLQGAVGQSDDNNSVDKLTQMNY-NGGLPEHYGYSASPSQRHESGVRDIHATRMLHEYSDVTMVQPRTDRVGLLHEYAASTRFGSGGGVVAA---DETEGGYISRVPYATSHLGMHSN--------VNPYTGQLFGRHMDALSNDRYASQTYAGKPLYSGYNDLHRPSPAL-EGFAGLPSYPKAGSSIRSSGSDLYHFADSVLESELKQKSGAPSGAQLR 692
M+ + PPPP+ ++ +PS T +NP+ P + S+ +LR+ + ALS F RRYDEL +HL FIQT+I S++ P P I I P + T +P + + K P+ + + P K + + + ATT+P ++ PE + + ++ A+D E + V + D+ QS + L K MC RS+RRYI +++S+ +LREEVP ALK A NPAKLVL+C G+F+LQG +A+ K S M+ GR AS++ LE FL+M DG I+ VKEEA ++A+ WRKRL EGGL KAC+ D RGLL LIG +GIP +F +DIKDL RA + ++I+ LRRS LLARIPE+IE+ +K KREVEA++I TF ++ + P+TIL SFL KS E KR + EA S V + ++KHL DLK +++C +NHKIDP K I EKISSLE+EI LDKK++E V K+K E ESSK K+Q+ KR RF GH AV D N+S D+L N + G+P++ +SA YS V LH G G GV+A+ G +P S+ G++ + V + GQ +G H D +R Q+YA G N L+RP+P++ EGFAGLP+ G S RSS SDLY FADS+ ES+ G+ SG +R
Sbjct: 1 MSRIAAPPPPVKAEHNPSPPPPLPSQPPTLIKQELTVPNNPQQPHFINSVYHLRNLSAALSAFHRRYDELHEHLHFIQTSIDSKLLPNSHPSPPIAILPLSKTLSSPVSDTTIAPAIVPIIKTLSSQVPETTTPPAIVPITKTLSSQVPEATTVPAIAPIAETLASDVPEETITAPAIVPIAETLASDVPETTTVAELDKSEQATDNNQSSHSEIELYCKRMCSRSIRRYITSNLSNVSKLREEVPSALKFAENPAKLVLDCFGRFFLQGIKAYCKDSPMIPGRQASVLILEFFLMMGFDGNEIEAKVKEEAESSALDWRKRLISEGGLVKACQIDGRGLLLLIGCFGIPGAFTNDDIKDLVRAGRAREIADVLRRSHVLLARIPEVIERTMKNKREVEAVDITCTFGLESSFSPRTILTSFLQKSKETWKRVKNEAQGSSAAVKEANRKHLADLKLVIKCLENHKIDPLKVLSGWQIYEKISSLEKEIAALDKKIKEQVTQKRKADEAESSKNLKSQELKRTRFAGHMPEQHKAVAYVDLNSSSDRLMPTNLLDSGIPQYGSFSA---------------------YSSV------------LHGQGVGPSPGIGAGVIASRVGAAMSAGSSDLLPTG-SYAGINGSILVDRARQVVNHNGQPYGWHGDESFRERLIGQSYAESSAL-GVNGLYRPAPSMMEGFAGLPNPSSIGVSNRSSNSDLYQFADSIPESD--TYGGSRSGGAVR 713
Match: A0A7J7IAY0 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})
HSP 1 Score: 449.129 bits (1154), Expect = 5.358e-146
Identity = 294/750 (39.20%), Postives = 411/750 (54.80%), Query Frame = 0
Query: 1 MTTDSTPPPPLTSDDHPSTTT-----------------SNPRPPDYATSISNLRSFATALSTFQRRYDELQQHLDFIQTTIHSQI-----PDPSI-IPPF-------IPPTPPSPIAINLDKN-----PKLLSNSDVEPKIK-IEADIRVATTIPDKKQAVVEVSESKPEIKLPDSGLEHKSDDKATDCGEKSDVGVI------MDDTQSEL--LRLCSKTMCGRSLRRYIVTHISDGDRLREEVPKALKCAANPAKLVLECVGKFYLQGSRAFNKSSLMLAGRDASIITLECFLLMERDGVVIDNGVKEEAHNAAVAWRKRLRGEGGLYKACEADARGLLFLIGGYGIPKSFEVEDIKDLTRACKLQDISGALRRSRYLLARIPELIEQMLKYKREVEALNIVYTFDVKDKYPPQTILKSFLSKSDEILKRKRTEAADLSTLVIK-DKKHLDDLKSLLRCWKNHKIDPSKTFPDLDINEKISSLEREITVLDKKVREDVANKKKEKEVESSKRSKTQDAKRPRFPGHDLPLQGAVGQSDDNNSVDKLTQMNY-NGGLPEHYGYSASPSQRHESGVRDIHATRMLHEYSDVTMVQPRTDRVGLLHEYAASTRFGSGGGVVAA---DETEGGYISRVPYATSHLGMHSN--------VNPYTGQLFGRHMDALSNDRYASQTYAGKPLYSGYNDLHRPSPAL-EGFAGLPSYPKAGSSIRSSGSDLYHFADSVLESELKQKSGAPSGAQLR 692
M+ + PPPP+ ++ +PS +NP+ P + S+ +LR+ + ALS F RRYDEL +HL FI+T+I S++ P P I I P + T +P + + K P+ + + P K + + + ATT+P ++ PE + + ++ A+D E + V + D+ QS + L K MC RS+RRYI +++S+ +LREEVP ALK A NPAKLVL+C G+F+LQG +A+ K S M+ GR AS++ LE FL+M DG I+ VKEEA ++A+ WRKRL EGGL KAC+ D RGLL LIG +GIP +F +DIKDL RA + ++I+ LRRS LLARIPE+IE+ +K KREVEA++I TF ++ + P+TIL SFL KS E KR + EA S V + ++KHL DLK +++C +NHKIDP K I EKISSLE+EI LDKK++E V K+K E ESSK K+Q+ KR RF GH AV D N+S D+L N + G+P++ +SA YS V LH G G GV+A+ G +P S+ G++ + V + GQ +G H D +R Q+YA G N L+RP+P++ EGFAGLP+ G S RSS SDLY FADS+ ES+ G+ SG +R
Sbjct: 1 MSRTAAPPPPVKAEHNPSPPPPLPSQPPTLIKQELIVPNNPQQPHFINSVYHLRNLSAALSAFHRRYDELHEHLHFIRTSIDSKLLPNSHPSPPIAILPLSKTLSSPVSDTTIAPAIVPIIKTLSSQVPETTTPPAIVPITKTLSSQVPEATTVPAIAPIAETLASDVPEETITAPAIVPIAETLASDVPETTTVAELDKSEQATDNNQSSHSEIELYCKRMCSRSIRRYITSNLSNVSKLREEVPSALKFAENPAKLVLDCFGRFFLQGIKAYCKDSPMIPGRQASVLILEFFLMMGFDGNEIEAKVKEEAESSALDWRKRLISEGGLVKACQIDGRGLLLLIGCFGIPSAFTNDDIKDLVRAGRAREIADVLRRSHVLLARIPEVIERTMKNKREVEAVDITCTFGLESSFSPRTILTSFLQKSKETWKRVKNEAQGSSAAVKEANRKHLADLKLVIKCLENHKIDPLKVLSGWQIYEKISSLEKEIAALDKKIKEQVTQKRKADEAESSKNLKSQELKRTRFAGHMPEQHKAVAYVDLNSSSDRLMPTNLLDSGIPQYGSFSA---------------------YSSV------------LHGQGVGPSPGIGAGVIASRVGAAMSAGSSDLLPTG-SYAGINGSILVDRARQVVNHNGQPYGWHGDESFRERLIGQSYAESSAL-GVNGLYRPAPSMMEGFAGLPNPSSIGVSNRSSNSDLYQFADSIPESD--TYGGSRSGGAVR 713
Match: A0A5B7BTH5 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})
HSP 1 Score: 446.432 bits (1147), Expect = 2.123e-145
Identity = 279/682 (40.91%), Postives = 385/682 (56.45%), Query Frame = 0
Query: 26 PPDYATSISNLRSFATALSTFQRRYDELQQHLDFIQTTIHSQIP---DPSIIPPF-IPPTPPSPIAINLDKNPKLLSNSDVEPKIKIEADIRVATTIPDKKQAVVEVSESKPE--IKLPDSGL-----EHKSDDKATDCGEKSDVGVIMDDTQS---ELLRLCSKTMCGRSLRRYIVTHISDGDRLREEVPKALKCAANPAKLVLECVGKFYLQGSRAFNKSSLMLAGRDASIITLECFLLMERDGVVIDNGVKEEAHNAAVAWRKRLRGEGGLYKACEADARGLLFLIGGYGIPKSFEVEDIKDLTRACKLQDISGALRRSRYLLARIPELIEQMLKYKREVEALNIVYTFDVKDKYPPQTILKSFLSKSDEILKRKRTEA-ADLSTLVIKDKKHLDDLKSLLRCWKNHKIDPSKTFPDLDINEKISSLEREITVLDKKVREDVANKKKEKEVESSKRSKTQDAKRPRFPGHDLPLQGAVGQSDDNNSVDKLTQMNY-NGGLPEHYG-YSASPSQRHESGVRDIHATRMLHEYSDVTMVQPRTDRVGLLHEYAASTRFGSGGGVVAADETEGGYISRVPYATSHLG-MHSNVNPYTGQLFGRHMDALSNDRYASQTYAGKPLYSGYNDLHRP-SPALEGFAGLPSYPKAGSSIRSSGSDLYHFADSVLESELKQKSGAPSG 688
PP + S++ LR +TA+S FQRRYDELQ+HL+FI++ I S+ P D PP + P + I D+ L S++ P ++ A + T +P + S P+ +P + + SD+ E ++ D+ QS E+ LC K M R LR+Y+V +S+ +LREEV +ALK A PAKLVLEC+G+FY QG +A+ S M+ R AS++ LECFLL + VV++ VKEEA AAVAW+KRL EGG+ ACE DARGLL + +GIP +F D++DL R ++IS LRRS LLARIPE+IE+M+K K EVEA+++ TF ++D++PPQ+IL FL +S E KRKR A + +KKHL DLKS+ +C ++HKID K P INEKI++L+++I +DKK E V K+K E + SK+ TQ+ KR R GH G +D +S D L MN+ +GG P H Y+ASPS +LH Y G L E GS GV+AA G +S +G + V + GQ +G H DA ++R ++AG+P G N L+RP S +LEGFAGLP++ G S RSS SDLY FAD+VLESE + SG+ G
Sbjct: 27 PPHFINSVTELRDLSTAISAFQRRYDELQEHLNFIRSAIDSKWPEHLDAGPSPPQQLTKVPATTIVPLTDRTETLASDTPASPPQQL-AIVPAITIVPLTETPASNTPASPPQQLATVPAATIVPLTETLASDNTIVPAPESANSEQKTDNKQSSRSEVEFLCEK-MSSRGLRKYMVMRLSNIAKLREEVTEALKLAPKPAKLVLECLGRFYFQGRKAYTTQSPMITARQASVLVLECFLLRGCNDVVVEPAVKEEADAAAVAWKKRLVSEGGVSTACEIDARGLLLFLACFGIPHAFTNGDVRDLFRPSNAKEISHVLRRSNVLLARIPEIIERMIKDKMEVEAVDVACTFGLEDRFPPQSILTLFLQESKEAWKRKRKAAHGSFTAENEANKKHLADLKSVTKCLEDHKIDTQKLLPGWKINEKITTLKKDIADIDKKTGETVMLKRKADETKPSKKVTTQEEKRLRSTGHG---PQDFGHADSRSSYDNLGPMNFLDGGFPSHASTYTASPS--------------ILHGYG-----------AGFLPENIIGPVAGSRSGVLAAGAGVGVGMSTGTGGLMPMGSIAGQVMNHDGQPYGWHGDAAFHERLIGHSFAGQPASIGVNGLYRPSSSSLEGFAGLPNHSSVGVSNRSSTSDLYQFADAVLESESYRSSGSRPG 678
Match: A0A2R6PSF1 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})
HSP 1 Score: 427.943 bits (1099), Expect = 5.339e-139
Identity = 275/686 (40.09%), Postives = 370/686 (53.94%), Query Frame = 0
Query: 8 PPPL--TSDDHPSTTTSNPRPPDYAT--------SISNLRSFATALSTFQRRYDELQQHLDFIQTTIHS---QIPDPSIIPPFIPPTPPSPIAINLDKNPKLLSNSDVEPKIKIEADIRVATTIPDKKQAVVEVSESKPEIKLPDSGLEHKSDDKATDCGEKSDVGVIMDDTQSELLRLCSKTMCGRSLRRYIVTHISDGDRLREEVPKALKCAANPAKLVLECVGKFYLQGSRAFNKSSLMLAGRDASIITLECFLLMERDGVVIDNGVKEEAHNAAVAWRKRLRGEGGLYKACEADARGLLFLIGGYGIPKSFEVEDIKDLTRACKLQDISGALRRSRYLLARIPELIEQMLKYKREVEALNIVYTFDVKDKYPPQTILKSFLSKSDEILKRKRTEAADLSTLVIK-DKKHLDDLKSLLRCWKNHKIDPSKTFPDLDINEKISSLEREITVLDKKVREDVANKKKEKEVESSKRSKTQDAKRPRFPGHDLPLQGAVGQSDDNNSVDKLTQMN-YNGGLPEHYGYSASPSQRHESGVRDIHATRMLHEYSDVTMVQPRTDRVGLLHEYAASTRFGSGGGVVAADETEGGYISRVPYATSHLGMHSNVNPYTGQLFGRHMDALSNDRYASQTYAGKPLYSGYNDLHRPSPALEGFAGLPSYPKAGSSIRSSGSDLYHFADSVLESE 678
PPPL T++ P + N RP + S++ LR + ALS F RRYDELQ+HLD+I+T+I S QI D I+P + T+P + V + + K+DD +T +S + +LC + C RSLR+YIV+H+ + +LREEVP ALK A NPAKLV+EC G+F+LQG RA++K+S M+A R AS++ LE F+LM D I+ V++EA A+V WR+RL GEGGL KACE DARGLL LIG +GIPK F +D+KDL A I ALRRS LLARIPE+IE M+K K E+EA++IV+ F ++ ++PP+TIL SFL +S E LK+ R + S ++ K +KK+L D+K +L+C + HKIDP K P +NEKIS LE++I LDKK+ E V K+K E ES KR K+++ KR RF G Q A D S D LT MN GG+P++ YS S H +G P LH A +G G V A G V +G V TGQ +G H +A +R Q+YA P G N L+R +P++EGFAGLP+ G S RSS SDLY FAD+++E +
Sbjct: 4 PPPLAITTNPSPPQNSQNHRPHSHPPPQQPQLTYSVTALRHLSDALSAFHRRYDELQEHLDYIRTSIDSKLLQILDTEIVP--------------------------------------IPETVPLTETLVSDTA---------------KTDDNSTS-------------PESVIEKLC-RDNCSRSLRKYIVSHLQNVSKLREEVPSALKFAPNPAKLVMECFGRFFLQGIRAYDKASPMIASRQASVLVLEFFMLMGCDVGEIEEVVRKEAAEASVEWRRRLVGEGGLGKACEVDARGLLLLIGCFGIPKIFRNDDVKDLIWASNAGAIRDALRRSSVLLARIPEIIEWMMKNKMELEAVDIVFIFGMESRFPPETILTSFLQESKESLKKARKTSQGSSAVLNKANKKNLADMKLVLKCVEYHKIDPLKALPGWKLNEKISILEKDIADLDKKIGEQVKPKRKADEPESLKRPKSKEIKRTRFSGPVPEQQKAAAYVDHMASFDGLTPMNSLGGGVPQYGTYSPYSSVLHGAG------------------AGPSLGTGTHLHGAGAGAVMSTGAGDVLATGPRSGVHGGV--LVDRVG---QVITTTGQPYGWHGEASYRERLVGQSYAEPPAL-GTNGLYRAAPSMEGFAGLPNPSSIGVSRRSSNSDLYQFADAIVERQ 598
Match: A0A2R6PVM2 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})
HSP 1 Score: 424.861 bits (1091), Expect = 1.548e-137
Identity = 276/682 (40.47%), Postives = 374/682 (54.84%), Query Frame = 0
Query: 1 MTTDSTPPPPLTSDDHPSTTTSNPRPPDYATSISNLRSFATALSTFQRRYDELQQHLDFIQTTIHSQIPDPSIIPPFIPPTPPSPIAINLDKNPKLLSNSDVEPKIKIEADIRVATTIPDKKQAVVEVSESKP--EIKLPDSGLEHKSDDKATDCGEKSDVGVIMDDTQSELLRLCSKTMCGRSLRRYIVTHISDGDRLREEVPKALKCAANPAKLVLECVGKFYLQGSRAFNKSSLMLAGRDASIITLECFLLMERDGVVIDNGVKEEAHNAAVAWRKRLRGEGGLYKACEADARGLLFLIGGYGIPKSFEVEDIKDLTRACKLQDISGALRRSRYLLARIPELIEQMLKYKREVEALNIVYTFDVKDKYPPQTILKSFLSKSDEILKRKRTEAADLSTLVIK-DKKHLDDLKSLLRCWKNHKIDPSKTFPDLDINEKISSLEREITVLDKKVREDVANKKKEKEVESSKRSKTQDAKRPRFPGHDLPLQGAVGQSDDNNSVDKLTQM-NYNGGLPEHYGYSASPSQRHESGVRDIHATRMLHEYSDVTMVQPRTDRVGLLHEYAASTRFGSGGGVVAADETEGGYISRVPYATSHLGMHSNVNPYTGQLFGRHMDALSNDRYASQTYAGKPLYSGYNDLHRPSPALEGFAGLPSYPKAGSSIRSSGSDLYHFADSVLESE 678
+ + PP TS +H P+ P S++ LR + ALS F RRYDELQ+HLDFI+T+I S KLL D E +V ++ES P E + D+ K+DD + +SE+ +LC + C +LRRYIV+H+ + +LREEVP ALK A NPAKLV++C G+F+LQG RA++K+S M+A R AS++ LE F+LM + ++ V+++A AAV WR+RL GEGGL KACE DARGLL LIG +GIPK F ED+KDL RA +I ALRRS LLA+IPE+IE MLK K EVEA++IV+ F ++ ++PP+TIL SFL +S E K+ R + S V K +KK+L D+K +L+C K HKIDP K P ++NEKI LE++I +DKK+ E + K+K E+ESSKR K+Q+ KR RF G Q A D S D LT M + GG+P++ YS S +LH S V P LH A +G G V G+ S V + + +V TGQ +G H +A DR Q+YA +P G N L+R + ++EGFAG P+ G S RSS SDLY FAD+++E E
Sbjct: 34 LAITTNPPQQQTSQNH---RPHPPQQPQLTDSVTALRPLSDALSAFHRRYDELQEHLDFIRTSIDS----------------------------KLLQLLDTE---------------------IVPITESVPITETLVSDTA---KTDDNSPS-------------PESEIEKLC-RDNCSLTLRRYIVSHLQNVSKLREEVPSALKFAPNPAKLVMKCFGRFFLQGIRAYDKASPMIASRQASVLVLEFFMLMGCEVGEVEEVVRKDAEEAAVEWRRRLVGEGGLGKACEVDARGLLLLIGCFGIPKVFRNEDVKDLIRASNAGEICDALRRSSVLLAKIPEIIEWMLKTKMEVEAVDIVFIFGMESRFPPETILTSFLQESKETWKKARKTSQGSSAAVNKANKKNLADMKLVLKCVKYHKIDPLKALPGWNLNEKIFKLEKDIADIDKKIGEQIKPKRKADELESSKRPKSQEVKRTRFSGPVPEQQKAAAYVDHMASFDGLTPMTSLGGGVPQYSTYSPYSS--------------VLHGAS----VGPSLGTGTHLHGARAGAVMSAGAGNVLPT----GHYSGV-HGGVLVDRVGHVINTTGQPYGWHGEASYRDRLVGQSYA-EPAALGTNGLNRATLSMEGFAGFPNPSSIGVSNRSSNSDLYQFADAIVERE 622
Match: A0A7J0GM44 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})
HSP 1 Score: 414.075 bits (1063), Expect = 2.340e-133
Identity = 274/683 (40.12%), Postives = 372/683 (54.47%), Query Frame = 0
Query: 1 MTTDSTPPPPLTSDDHPSTTTSNPRPPDYATSISNLRSFATALSTFQRRYDELQQHLDFIQTTIHSQIPDPSIIPPFIPPTPPSPIAINLDKNPKLLSNSDVEPKIKIEADIRVATTIPDKKQAVVEVSESKP--EIKLPDSGLEHKSDDKATDCGEKSDVGVIMDDTQSELLRLCSKTMCGRSLRRYIVTHISDGDRLREEVPKALKCAANPAKLVLECVGKFYLQGSRAFNKSSLMLAGRDASIITLECFLLMERDGVVIDNGVKEEAHNAAVAWRKRLRGEGGLYKACEADARGLLFLIGGYGIPKSFEVEDIKDLTRACKLQDISGALRRSRYLLARIPELIEQMLKYKREVEALNIVYTFDVKDKYPPQTILKSFLSKSDEILKRKRTEAADLSTLVIK-DKKHLDDLKSLLRCWKNHKIDPSKTFPDLDINEKISSLEREITVLDKKVREDVANKKKEKEVESSKRSKTQDAKRPRFPGHDLPLQGAVGQSDDNNSVDKLTQM-NYNGGLPEHYGYSASPSQRHESGVR-DIHATRMLHEYSDVTMVQPRTDRVGLLHEYAASTRFGSGGGVVAADETEGGYISRVPYATSHLGMHSNVNPYTGQLFGRHMDALSNDRYASQTYAGKPLYSGYNDLHRPSPALEGFAGLPSYPKAGSSIRSSGSDLYHFADSVLESE 678
+ + PP TS +H P+ P S++ LR + ALS F RRYDELQ+HLDFI+T+I S KLL D E +V ++ES P E + D+ K+DD + +SE+ +LC + C +LRRYIV+H+ + +LREEVP ALK A NPAKLV++C G+F+LQG RA++K+S M+A R AS++ LE F+LM D ++ V+++A AAV WR+RL GEGGL KACE DARGLL LIG +GIPK F ED+KDL RA +I ALRRS LLA+IPE+IE MLK K EVEA++IV+ F ++ ++PP+TIL SFL +S E K+ R + S V K +KK+L D+K +L+C K H+IDP K P ++NEKI LE++I +DKK+ E + K+K E+ESSKR K+Q+ KR RF G + A D S D LT M + GG+P++ YS S H + V + LH +L S G GGV+ + RV V TGQ +G H +A DR Q+YA +P G N L+R + ++EGFAGLP+ G S RSS SDLY FAD+++E E
Sbjct: 34 LAITTNPPQQQTSQNH---RPHPPQQPQLTDSVTALRPLSDALSAFHRRYDELQEHLDFIRTSIDS----------------------------KLLQLLDTE---------------------IVPITESVPITETLVSDTA---KTDDNSPS-------------PESEIEKLC-RDNCSLTLRRYIVSHLQNVSKLREEVPSALKFAPNPAKLVMKCFGRFFLQGIRAYDKASPMIASRQASVLVLEFFMLMGCDVGEVEEVVRKDAEEAAVEWRRRLVGEGGLGKACEVDARGLLLLIGCFGIPKVFRNEDVKDLIRASNAGEIRDALRRSSVLLAKIPEIIEWMLKTKMEVEAVDIVFIFGMESRFPPETILTSFLRESKETWKKARKTSQGSSAAVNKANKKNLADMKLVLKCVKYHEIDPLKALPGWNLNEKIFKLEKDIADIDKKIGEQIKPKRKADELESSKRPKSQEVKRTRFSGPVPEQKKAAAYVDHMASFDGLTPMTSLGGGVPQYSTYSPYSSVLHGASVGPSLGIGTHLHGAGAGAGAVVSAVAGNVLPTGHYS---GIHGGVL---------VDRV----------GQVINTTGQPYGWHGEASYRDRLVGQSYA-EPAALGTNGLNRATLSMEGFAGLPNPSSIGVSSRSSNSDLYQFADAIVERE 624
Match: A0A2G9GZP8 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})
HSP 1 Score: 394.045 bits (1011), Expect = 1.801e-124
Identity = 275/766 (35.90%), Postives = 391/766 (51.04%), Query Frame = 0
Query: 8 PPPLTSDDHPSTTTSNPR----------------------------PPDYATSISNLRSFATALSTFQRRYDELQQHLDFIQTTIHSQIP--DPSIIP--------PFIPPTPPS--------PIAINLDKNP----------KLLSNSDVEP---KIKIE-------ADIRVATTIPDKKQAVVEVSESKPEIKLP-DSGLEHKSDDKATDCGEKSDVGVIMDDTQ------SELLRLCSKTMCGRSLRRYIVTHISDGDRLREEVPKALKCAANPAKLVLECVGKFYLQGSRAFNKSSLMLAGRDASIITLECFLLM-------ERDGVV--IDNGVKEEAHNAAVAWRKRLRGEGGLYKACEADARGLLFLIGGYGIPKSFEVEDIKDLTRACKLQDISGALRRSRYLLARIPELIEQMLKYKREVEALNIVYTFDVKDKYPPQTILKSFLSKSDEILKR-KRTEAADLSTLVIKDKKHLDDLKSLLRCWKNHKIDPSKTFPDLDINEKISSLEREITVLDKKVREDVANKKKEKEVESSKRSKTQDAKRPRFPGHDLPLQGAVGQSDD-----NNSVDKLTQMNYNGGLPEHYGYSASPSQRHESGVRDIHATRMLHEYSDVTMVQPRTDRVGLLHEYAASTRFGSGGGVVAADETEGGYISRVPYATSHLGMHSNVNPYTGQL-------FGRHMDALSNDRYASQTYAGKPLYSGYNDLHRPSPALEGFAGLPSYPKAGSSIRSSGSDLYHFADSVLESE 678
PPPLT++ +PST + P+ PP + SI L+ + A++ F+ YD+L HL I+ I S++P P I P P P PS P+A +L K P KL S + V P K+ E A++ + T + +E + LP ++ L S K GE+ V+ + Q SEL C K MC R +R+Y+VTH+SD +LREEVPKALK A NP K+VLEC+GKF+LQG +AF + S M+A R+ASI LECFLLM E D V I+ V+EEA +AA+AWRKRL EGG+ KA + DARGLL + +GIP SF+ ED++DL A ++I G L++S L+ RIPE++E M+K K EV+A++I TF +++ + PQTIL SFL +S E K+ K+ +T +KK L LKS+ +C + H +DP++ INEKI++LE+EI+ ++K + A+K+K E E+SK+SKTQ+AKR R+ G Q +D+ +N V L +Y+ LP YG + GLL E T G G G+++++ G +S PYA H G+ + GQL + RH D N+R+A G+P G L+R S ++EGFAG P+ G R S +DLY FADSV+E E
Sbjct: 10 PPPLTAEVNPSTVSPPPQENTPVTNHPSDSLPESIELETPAPAVPSPPLFVNSIGKLKDLSAAIAAFKECYDDLHDHLQSIKAAILSKLPPETPHITPASPSVSKLPLETPAAPSLSKLPSETPVAPSLSKLPSETLVAPSSSKLPSETPVAPSSSKLPPETPLAPSSANLLLETPLAPSSNLPLETPLAPFSANLPSETSLAPPSPPKPDLSGER----VLQKEQQDQNHPKSELEGFC-KIMCSRGIRKYLVTHLSDLPKLREEVPKALKWAPNPPKMVLECLGKFFLQGRKAFTRDSPMIASREASIFILECFLLMMGMYNTSELDNGVLNIEKAVREEAEHAALAWRKRLMFEGGVAKASQIDARGLLLFVACFGIPASFKREDVRDLVIAANAKEIVGVLQKSHVLMNRIPEIVEGMIKNKMEVDAVDIACTFGLEEMFNPQTILLSFLRESKEYWKKPKKGSNGSAATFNEANKKQLAALKSIKKCLERHNLDPAELLSGWQINEKIATLEKEISDFNRKSADKTAHKRKASETETSKKSKTQEAKRSRYIGRGPQQQNTAAHADNRRNLLDNRVPSLAN-HYSAPLPVIYGGPGA----------------------------------GLLPESTIPT--GVGAGLLSSN----GVLSTGPYAGVHGGVLVDRG---GQLINHSTHPYARHGDLAKNERFA-----GQPSSVGLTTLYRASTSMEGFAGAPNASSVGVGSRGSAADLYQFADSVVERE 721
Match: A0A834GAA5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7124916.1}))
HSP 1 Score: 374.015 bits (959), Expect = 4.092e-118
Identity = 247/656 (37.65%), Postives = 370/656 (56.40%), Query Frame = 0
Query: 28 DYATSISNLRSFATALSTFQRRYDELQQHLDFIQTTIHSQIPDPSIIPPFIPPTPPSPIAINLDKNPKLLSNSDVEPKIKIEADIRVATTIPDKKQAVVEVSESKPEIKLPDSGLEHKSDDKATDCGEKSDVGVIMDDTQSELLRLCSKTMCGRSLRRYIVTHISDGDRLREEVPKALKCAANPAKLVLECVGKFYLQGSRAFNKSSLMLAGRDASIITLECFLLMERDGVVIDNGVKEEAHNAAVAWRKRLRGEGGLYKACEADARGLLFLIGGYGIPKSFEVEDIKDLTRACKLQDISGALRRSRYLLARIPELIEQMLKYKREVEALNIVYTFDVKDKYPPQTILKSFLSKSDEILKR-KRTEAADLSTLVIKDKKHLDDLKSLLRCWKNHKIDPSKTFPDLDINEKISSLEREITVLDKKVREDVANKKKEK-EVESSKRSKTQDAKRPRFPGHDLPLQGAVGQSDDNNSVDKLTQMNYNGGLPEHYG-YSASPSQRH-ESGVRDIHATRMLHEYSDVTMVQPRTDRVGLLHEYAASTRFGSGGGVVAADETEGGYISRVPYATSHLGMHSNVNPYTGQLFGRHMDALSNDRYASQTYAGKPLYSGYNDLHRPSPAL-EGFAGLPSYPKAGSSIRSSGSDLYHFADSVLESE 678
D+ I++LR+ + ALS F RRYDEL +HLDFI+T+I SQ+ L +++V P ++I +P Q+V P + + G KS++++ D V + +QSE+ +C KTMC RSLR+YI++++S+ +LREEVP ALK A+NPAKLVL+C G+F+LQG +A+ K S M+ R AS++ LE FLLM D I++ VK+EA ++AV W+KRL EGGL KACE D RGLL LIG +GIPK F+ EDI+DL RA + +IS LRRS LL +IP++IE M+K K EVEA++++YTF ++ ++ P ILKSFL + + K+ K+ +S + +K+ L D+K +L+C K+HK+DPSK + EKIS LE++I+ LDKK++E V +K+KE E S ++K+QD KR R +D VD + + +GG+P+ YSA S ++G+R A + P + YA + GG+ D+T G + +S+V PY G +A N+R S++Y +P G N L+ + + E +AGL + G+S R+S SDLY FAD+++++E
Sbjct: 60 DFINYIADLRNLSPALSAFHRRYDELHEHLDFIRTSIDSQLLQ--------------------------LLDTEVLPNVEI---------LPPADQSV-------PAPIVEELG---KSEEQSQD-------DVTTESSQSEIETIC-KTMCFRSLRKYIISNLSNLAKLREEVPLALKLASNPAKLVLDCFGRFFLQGIKAYYKDSPMIPSRKASVLVLEYFLLMGFDSGEIEDAVKQEAESSAVDWKKRLMTEGGLVKACETDGRGLLLLIGCFGIPKVFKYEDIRDLIRAGNVIEISDVLRRSNVLLTKIPDIIEWMVKNKMEVEAVDVMYTFGMESRFLPVKILKSFLLECKQTWKKTKQASEGSVSIVNNGNKRQLADMKLVLKCLKDHKMDPSKVLNGWHLEEKISKLEKKISELDKKIKEQVKSKRKEADEAGPSHKAKSQDLKRARV-------------ADSRPHVDYIERNLLDGGIPQFRNTYSAYSSVVGPKAGIRVAEA------------LTPGS--------YATAVH----GGI--PDDTVG-----------QISNYSSVQPY-----GWRGEASLNERLVSRSYV-EPSAHGANGLYGAAATVAESYAGLSNPLSIGASYRTSTSDLYQFADTIVDTE 606
Match: A0A067JI55 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})
HSP 1 Score: 353.984 bits (907), Expect = 3.493e-110
Identity = 210/547 (38.39%), Postives = 312/547 (57.04%), Query Frame = 0
Query: 143 EHKSDDKATDCGEKSDVGVIMDDTQSELLRLCSKTMCGRSLRRYIVTHISDGDRLREEVPKALKCAANPAKLVLECVGKFYLQGSRAFNKSSLMLAGRDASIITLECFLLMERDGVVIDNGVKEEAHNAAVAWRKRLRGEGGLYKACEADARGLLFLIGGYGIPKSFEVEDIKDLTRACKLQDISGALRRSRYLLARIPELIEQMLKYKREVEALNIVYTFDVKDKYPPQTILKSFLSKSDEILKRKRTEAADLSTLVIKD--KKHLDDLKSLLRCWKNHKIDPSKTFPDLDINEKISSLEREITVLDKKVREDVANKKKEKEVESSKRSKTQDAKRPRFPGH--------DLPLQGAVGQSDDNNSVDKLTQMNYNGGLPEHYGYSASPSQRHESGVRDIHATRMLHEYSDVTMVQPRTDRVGLLHEYAASTRFGSGGGVVAADETEGGYISRVPYATSHLGMHSNVNPYTGQLFGRHMDALSNDRYASQTYAGKPLYSGYNDLHRP-----SPALEGFAGLPSYPKAGSSIRSSGSDLYHFADSV 674
+ K+ + K++ + T+SEL+ LC + MCGR LR+Y+ +H+S+ +LR EVP ALKCA+ PA+LVL+C+G+FYLQGSRA+ K+S M+ GR A I+ LE FLL+ + + D VK+EA AAVAWRKRL EGG+ +A E DARGLL +G +GIPK F ED+ DL R + I+ ALRRSR+L+ARI +++E+M+ + ++EA+++ YTF V+ K+PPQ +L SFL S+E LKR++ EA ++S +V+K+ +K + LK++++ ++ K DP+K P + E I LE+EI ++KK+ + V K+K E E + ++Q+ KR RF G L Q A G D N+ +MN G G+S + +G M + YS V L E+A GGG + G +S G+H + GQ+ GR+ +Y P G + +H+P SP++EGFAGLP+ P G + R+S SDLY FAD+V
Sbjct: 137 KEKTIEAVETANRKTETDKAVVSTKSELISLC-EVMCGRGLRKYLTSHLSNVKKLRAEVPSALKCASKPARLVLDCMGRFYLQGSRAYTKNSPMIPGRKAGILILEFFLLIIDNDIEFDASVKQEAEQAAVAWRKRLVAEGGVSRASEIDARGLLLFVGCFGIPKVFSNEDVWDLIRLSSPKQIADALRRSRFLVARISDILERMMNHGAKIEAVDVAYTFGVEKKFPPQKLLTSFLRDSNEALKRRKREA-NISPIVLKEASEKQVAALKTVIKLLEDRKFDPTKLLPGWQLREMIDKLEKEIGDINKKIADKVTPKRKADENEFASNLRSQETKRSRFTGSPLISSPSIGLHEQRAAGHVDGNSLFSASLRMNLLDG-----GFSGQTNNPASAG-------PMPYGYS-----------VPSLPEHAIGMV--KGGGSILQGAGVGLSTGYSAPTSSFSGVHKEMLDRNGQIMGRNGPPYGWHGVGGSSYVDGP--HGQSFVHQPASGLFSPSIEGFAGLPNSPPTGGANRNSTSDLYRFADAV 654
HSP 2 Score: 49.6766 bits (117), Expect = 1.662e-3
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 0
Query: 15 DHPSTTTSNPRPPDYATSISNLRSFATALSTFQRRYDELQQHLDFIQTTIHSQ 67
D P P SI L++ +T+++ F RRYDELQ HLDFIQ+ I++
Sbjct: 50 DLPVVALQVPDKAQILQSIEQLKNLSTSINEFYRRYDELQNHLDFIQSAIYAH 102
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5B6Z0 | E-Value: 0.000e+0, PID: 78.51 | FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more] |
| A0A4V3WK29 | E-Value: 5.676e-147, PID: 39.47 | FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more] |
| A0A7J7IAY0 | E-Value: 5.358e-146, PID: 39.20 | FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more] |
| A0A5B7BTH5 | E-Value: 2.123e-145, PID: 40.91 | FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more] |
| A0A2R6PSF1 | E-Value: 5.339e-139, PID: 40.09 | FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more] |
| A0A2R6PVM2 | E-Value: 1.548e-137, PID: 40.47 | FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more] |
| A0A7J0GM44 | E-Value: 2.340e-133, PID: 40.12 | FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more] |
| A0A2G9GZP8 | E-Value: 1.801e-124, PID: 35.90 | FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more] |
| A0A834GAA5 | E-Value: 4.092e-118, PID: 37.65 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7124... [more] |
| A0A067JI55 | E-Value: 3.493e-110, PID: 38.39 | FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |
