Resource Type:
Polypeptide
Name:
XM_017364409.1
Identifier:
XM_017364409.1-protein
Sequence:
MDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVY
LVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQV
QTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKN
FIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACES
GKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDM
SKTYLANDDPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTA
YSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLD
LD
Sequence Length:
352
Sequence Checksum:
e877bd11e7f79b699ef0608e9dc58c73
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364409.1, derives from mRNA, XM_017364409.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364409.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364409.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TPQ3 ((Uncharacterized protein {ECO:0000313|EMBL:CDO98290.1}))
HSP 1 Score: 637.876 bits (1644), Expect = 0.000e+0
Identity = 312/352 (88.64%), Postives = 329/352 (93.47%), Query Frame = 0
Match: A0A068TPQ3 ((Uncharacterized protein {ECO:0000313|EMBL:CDO98290.1}))
HSP 1 Score: 637.876 bits (1644), Expect = 0.000e+0
Identity = 312/352 (88.64%), Postives = 329/352 (93.47%), Query Frame = 0
Query: 1 MDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 351
MDD+ELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWERVYLVDIGEQAVIP+GISKHVHA+KYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASI AV++IWKEGGL GFFRGNG+NV KVAPESAIKFYTYE+LKN IG N E DIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQT+ACESGKVP+LGKLS+DILV EGPRAFYRG+VPSLLGIIPYAGIDLAAYETLK+MSKTY+ +D +PGP VQLGCGTISGALGATCVYPLQVVRTRMQAQ +S AY GMSDVFRRT +HEG RGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL
Sbjct: 152 MDDDELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERVYLVDIGEQAVIPEGISKHVHATKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASIAPAVKSIWKEGGLFGFFRGNGINVFKVAPESAIKFYTYEMLKNVIGG-NKEDHRDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTYACESGKVPNLGKLSKDILVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYETLKEMSKTYILHDSEPGPFVQLGCGTISGALGATCVYPLQVVRTRMQAQRYNSDAAYKGMSDVFRRTIKHEGFRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 502
BLAST of XM_017364409.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6X532 ((calcium-binding mitochondrial carrier protein SCaMC-3-like isoform X1 {ECO:0000313|RefSeq:XP_027122760.1}))
HSP 1 Score: 637.491 bits (1643), Expect = 0.000e+0
Identity = 312/352 (88.64%), Postives = 328/352 (93.18%), Query Frame = 0
Match: A0A6P6X532 ((calcium-binding mitochondrial carrier protein SCaMC-3-like isoform X1 {ECO:0000313|RefSeq:XP_027122760.1}))
HSP 1 Score: 637.491 bits (1643), Expect = 0.000e+0
Identity = 312/352 (88.64%), Postives = 328/352 (93.18%), Query Frame = 0
Query: 1 MDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 351
MDD+ELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWERVYLVDIGEQAVIP+GISKHVHA+KYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASI AV++IWKEGGL GFFRGNG+NV KVAPESAIKFYTYE+LKN IG N E DIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQT+ACESGKVP LGKLS+DILV EGPRAFYRG+VPSLLGIIPYAGIDLAAYETLK+MSKTY+ +D +PGP VQLGCGTISGALGATCVYPLQVVRTRMQAQ +S AY GMSDVFRRT +HEG RGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL
Sbjct: 152 MDDDELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERVYLVDIGEQAVIPEGISKHVHATKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASIAPAVKSIWKEGGLFGFFRGNGINVFKVAPESAIKFYTYEMLKNVIGG-NKEDHRDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTYACESGKVPKLGKLSKDILVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYETLKEMSKTYILHDSEPGPFVQLGCGTISGALGATCVYPLQVVRTRMQAQRYNSDAAYKGMSDVFRRTIKHEGFRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 502
BLAST of XM_017364409.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6XD49 ((calcium-binding mitochondrial carrier protein SCaMC-3-like isoform X2 {ECO:0000313|RefSeq:XP_027123927.1}))
HSP 1 Score: 634.795 bits (1636), Expect = 0.000e+0
Identity = 311/352 (88.35%), Postives = 330/352 (93.75%), Query Frame = 0
Match: A0A6P6XD49 ((calcium-binding mitochondrial carrier protein SCaMC-3-like isoform X2 {ECO:0000313|RefSeq:XP_027123927.1}))
HSP 1 Score: 634.795 bits (1636), Expect = 0.000e+0
Identity = 311/352 (88.35%), Postives = 330/352 (93.75%), Query Frame = 0
Query: 1 MDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 351
MDD+ELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWERVYLVDIGEQAVIP+GISKHVHA+KYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASI+ AV++IWKEGGL GFFRGNG+NV KVAPESAIKFYTYE+LKN IG N E + DIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQT+ACESGKVP+LGKLS+DILV EGPRAFYRG+VPSLLGIIPYAGIDLAAYE LK+MSKTY+ +D +PGP VQLGCGTISGALGATCVYPLQVVRTRMQAQ +S AY GMSDVFRRT +HEG RGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL
Sbjct: 24 MDDDELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERVYLVDIGEQAVIPEGISKHVHATKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASIVPAVKSIWKEGGLFGFFRGNGINVFKVAPESAIKFYTYEMLKNVIGG-NKEHQ-DIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTYACESGKVPNLGKLSKDILVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYEKLKEMSKTYILHDSEPGPFVQLGCGTISGALGATCVYPLQVVRTRMQAQRYNSDAAYKGMSDVFRRTIKHEGFRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 373
BLAST of XM_017364409.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6XAL5 ((calcium-binding mitochondrial carrier protein SCaMC-3-like isoform X1 {ECO:0000313|RefSeq:XP_027123926.1}))
HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 311/352 (88.35%), Postives = 330/352 (93.75%), Query Frame = 0
Match: A0A6P6XAL5 ((calcium-binding mitochondrial carrier protein SCaMC-3-like isoform X1 {ECO:0000313|RefSeq:XP_027123926.1}))
HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 311/352 (88.35%), Postives = 330/352 (93.75%), Query Frame = 0
Query: 1 MDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 351
MDD+ELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWERVYLVDIGEQAVIP+GISKHVHA+KYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASI+ AV++IWKEGGL GFFRGNG+NV KVAPESAIKFYTYE+LKN IG N E + DIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQT+ACESGKVP+LGKLS+DILV EGPRAFYRG+VPSLLGIIPYAGIDLAAYE LK+MSKTY+ +D +PGP VQLGCGTISGALGATCVYPLQVVRTRMQAQ +S AY GMSDVFRRT +HEG RGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL
Sbjct: 152 MDDDELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERVYLVDIGEQAVIPEGISKHVHATKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASIVPAVKSIWKEGGLFGFFRGNGINVFKVAPESAIKFYTYEMLKNVIGG-NKEHQ-DIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTYACESGKVPNLGKLSKDILVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYEKLKEMSKTYILHDSEPGPFVQLGCGTISGALGATCVYPLQVVRTRMQAQRYNSDAAYKGMSDVFRRTIKHEGFRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 501
BLAST of XM_017364409.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZAX9 ((Uncharacterized protein {ECO:0000313|EMBL:MPA41161.1}))
HSP 1 Score: 630.172 bits (1624), Expect = 0.000e+0
Identity = 301/351 (85.75%), Postives = 329/351 (93.73%), Query Frame = 0
Match: A0A5B6ZAX9 ((Uncharacterized protein {ECO:0000313|EMBL:MPA41161.1}))
HSP 1 Score: 630.172 bits (1624), Expect = 0.000e+0
Identity = 301/351 (85.75%), Postives = 329/351 (93.73%), Query Frame = 0
Query: 1 MDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLD 350
+DD+ELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWER+YLVDIGEQAVIPDGISKH +ASKYLIAGGVAGAASRTATAPLDRLKVVLQVQT+RA I+ A++N+WKEGG LGFFRGNGLNV+KVAPESAIKFYT E+LKN IGD GE+ G+IGT+GRL+AGGLAGAVAQTAIYPMDLVKTRLQT A E GKVPSLGKLS+DI HEGPRAFYRG++PSLLGI+PYAGIDL AYETLKDMSKTY+ +D +PGPLVQLGCG ISG+LGA CVYPLQV+RTRMQAQHS+++TAY GMSDVF RTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSL+
Sbjct: 158 IDDDELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERIYLVDIGEQAVIPDGISKHGNASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTTRAYIIPAIKNLWKEGGFLGFFRGNGLNVMKVAPESAIKFYTNEMLKNVIGDAKGESSGNIGTTGRLIAGGLAGAVAQTAIYPMDLVKTRLQTCASEGGKVPSLGKLSKDIWFHEGPRAFYRGLLPSLLGIVPYAGIDLTAYETLKDMSKTYVLHDSEPGPLVQLGCGAISGSLGAACVYPLQVIRTRMQAQHSNTSTAYKGMSDVFWRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLE 508
BLAST of XM_017364409.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BIE3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542040.1}))
HSP 1 Score: 629.402 bits (1622), Expect = 0.000e+0
Identity = 304/352 (86.36%), Postives = 322/352 (91.48%), Query Frame = 0
Match: A0A5J5BIE3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542040.1}))
HSP 1 Score: 629.402 bits (1622), Expect = 0.000e+0
Identity = 304/352 (86.36%), Postives = 322/352 (91.48%), Query Frame = 0
Query: 1 MDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 351
+DDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWER+YLVDIGEQAVIPDGISKHV ASKYLIAGGVAGAASRT TAPLDRLKV+LQVQT+RA I A++NIWKEGG LGFFRGNGLNV+KV PESAIKFY YE+LKN I D GDIGT+GRLVAGGLAGAVAQTAIYPMDLVKTRLQT ACE GKVP+LGKLS+DI V EGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTY+ +D +PGP VQLGCGTISGA+GATCVYPLQV+RTRMQAQ S ++TAY GMSDVF RT QHEG RGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL
Sbjct: 156 IDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERIYLVDIGEQAVIPDGISKHVSASKYLIAGGVAGAASRTVTAPLDRLKVILQVQTTRACIFPAIKNIWKEGGFLGFFRGNGLNVMKVGPESAIKFYAYEMLKNVIRDAKEGDNGDIGTTGRLVAGGLAGAVAQTAIYPMDLVKTRLQTSACEGGKVPNLGKLSKDIWVQEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYVLHDGEPGPFVQLGCGTISGAVGATCVYPLQVIRTRMQAQRSDTSTAYKGMSDVFWRTLQHEGFRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 507
BLAST of XM_017364409.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6HZH2 ((Mitochondrial adenine nucleotide transporter adnt1 {ECO:0000313|EMBL:OIS97729.1}))
HSP 1 Score: 629.017 bits (1621), Expect = 0.000e+0
Identity = 304/353 (86.12%), Postives = 328/353 (92.92%), Query Frame = 0
Match: A0A1J6HZH2 ((Mitochondrial adenine nucleotide transporter adnt1 {ECO:0000313|EMBL:OIS97729.1}))
HSP 1 Score: 629.017 bits (1621), Expect = 0.000e+0
Identity = 304/353 (86.12%), Postives = 328/353 (92.92%), Query Frame = 0
Query: 1 MDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDLD 352
+DD+ELARFVEHVDKDNNGIITFEEWR+FLLLYPHEAT+ENIY YWERV LVDIGEQAVIP+GISKHVHA+KYLIAGGVAGAASRTATAPLDRLKVVLQVQT+RASI AV+NIWKEGGLL FFRGNGLNV+KVAPESAIKFYTYE+LKN I GE +GDIG SGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACE GKVP+LGKLS+DI V EG RAFYRG++PSLLGIIPYAGIDLAAYETLKD+SK Y+ +D +PGPLVQLGCGTISGALGA CVYPLQVVRTRMQAQ +++ AY GMSDVFRRT QHEGLRGFYKGLFPNLLKVVPAASITYLVYE+MKKSL+LD
Sbjct: 137 IDDDELARFVEHVDKDNNGIITFEEWRNFLLLYPHEATMENIYRYWERVCLVDIGEQAVIPEGISKHVHAAKYLIAGGVAGAASRTATAPLDRLKVVLQVQTTRASIGPAVKNIWKEGGLLSFFRGNGLNVMKVAPESAIKFYTYEMLKNLIASTKGEEQGDIGASGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACEGGKVPNLGKLSKDIWVKEGSRAFYRGLIPSLLGIIPYAGIDLAAYETLKDLSKIYILHDSEPGPLVQLGCGTISGALGAMCVYPLQVVRTRMQAQPTNADAAYKGMSDVFRRTLQHEGLRGFYKGLFPNLLKVVPAASITYLVYESMKKSLELD 489
BLAST of XM_017364409.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7WIM7 ((calcium-binding mitochondrial carrier protein SCaMC-2-B-like {ECO:0000313|RefSeq:XP_009778498.1}))
HSP 1 Score: 627.476 bits (1617), Expect = 0.000e+0
Identity = 303/353 (85.84%), Postives = 327/353 (92.63%), Query Frame = 0
Match: A0A1U7WIM7 ((calcium-binding mitochondrial carrier protein SCaMC-2-B-like {ECO:0000313|RefSeq:XP_009778498.1}))
HSP 1 Score: 627.476 bits (1617), Expect = 0.000e+0
Identity = 303/353 (85.84%), Postives = 327/353 (92.63%), Query Frame = 0
Query: 1 MDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDLD 352
+DD+ELARFVEHVDKDNNGIITFEEWR+FLLLYPHE T+ENIY YWERV LVDIGEQAVIP+GISKHVHA+KYLIAGGVAGAASRTATAPLDRLKVVLQVQT+RASI AV+NIWKEGGLL FFRGNGLNV+KVAPESAIKFYTYE+LKN I GE +GDIG SGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACE GKVP+LGKLS+DI V EG RAFYRG++PSLLGIIPYAGIDLAAYETLKD+SK Y+ +D +PGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQ +++ AY GMSDVFRRT QHEG RGFYKGLFPNLLKVVPAASITYLVYE+MKKSL+LD
Sbjct: 137 IDDDELARFVEHVDKDNNGIITFEEWRNFLLLYPHEVTMENIYRYWERVCLVDIGEQAVIPEGISKHVHAAKYLIAGGVAGAASRTATAPLDRLKVVLQVQTTRASIGPAVKNIWKEGGLLSFFRGNGLNVMKVAPESAIKFYTYEMLKNVIASTKGEEQGDIGASGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACEGGKVPNLGKLSKDIWVKEGSRAFYRGLIPSLLGIIPYAGIDLAAYETLKDLSKIYILHDSEPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQPTNADAAYKGMSDVFRRTLQHEGFRGFYKGLFPNLLKVVPAASITYLVYESMKKSLELD 489
BLAST of XM_017364409.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4C4R8 ((calcium-binding mitochondrial carrier protein SCaMC-2-B-like {ECO:0000313|RefSeq:XP_016496130.1}))
HSP 1 Score: 627.476 bits (1617), Expect = 0.000e+0
Identity = 303/353 (85.84%), Postives = 327/353 (92.63%), Query Frame = 0
Match: A0A1S4C4R8 ((calcium-binding mitochondrial carrier protein SCaMC-2-B-like {ECO:0000313|RefSeq:XP_016496130.1}))
HSP 1 Score: 627.476 bits (1617), Expect = 0.000e+0
Identity = 303/353 (85.84%), Postives = 327/353 (92.63%), Query Frame = 0
Query: 1 MDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDLD 352
+DD+ELARFVEHVDKDNNGIITFEEWR+FLLLYPHE T+ENIY YWERV LVDIGEQAVIP+GISKHVHA+KYLIAGGVAGAASRTATAPLDRLKVVLQVQT+RASI AV+NIWKEGGLL FFRGNGLNV+KVAPESAIKFYTYE+LKN I GE +GDIG SGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACE GKVP+LGKLS+DI V EG RAFYRG++PSLLGIIPYAGIDLAAYETLKD+SK Y+ +D +PGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQ +++ AY GMSDVFRRT QHEG RGFYKGLFPNLLKVVPAASITYLVYE+MKKSL+LD
Sbjct: 137 IDDDELARFVEHVDKDNNGIITFEEWRNFLLLYPHEVTMENIYRYWERVCLVDIGEQAVIPEGISKHVHAAKYLIAGGVAGAASRTATAPLDRLKVVLQVQTTRASIGPAVKNIWKEGGLLSFFRGNGLNVMKVAPESAIKFYTYEMLKNVIASTKGEEQGDIGASGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACEGGKVPNLGKLSKDIWVKEGSRAFYRGLIPSLLGIIPYAGIDLAAYETLKDLSKIYILHDSEPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQPTNADAAYKGMSDVFRRTLQHEGFRGFYKGLFPNLLKVVPAASITYLVYESMKKSLELD 489
BLAST of XM_017364409.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QG87 ((Calcium-binding mitochondrial carrier protein like {ECO:0000313|EMBL:PSS07601.1}))
HSP 1 Score: 626.706 bits (1615), Expect = 0.000e+0
Identity = 302/352 (85.80%), Postives = 323/352 (91.76%), Query Frame = 0
Match: A0A2R6QG87 ((Calcium-binding mitochondrial carrier protein like {ECO:0000313|EMBL:PSS07601.1}))
HSP 1 Score: 626.706 bits (1615), Expect = 0.000e+0
Identity = 302/352 (85.80%), Postives = 323/352 (91.76%), Query Frame = 0
Query: 1 MDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYEYWERVYLVDIGEQAVIPDGISKHVHASKYLIAGGVAGAASRTATAPLDRLKVVLQVQTSRASILSAVRNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYELLKNFIGDINGEAKGDIGTSGRLVAGGLAGAVAQTAIYPMDLVKTRLQTHACESGKVPSLGKLSRDILVHEGPRAFYRGIVPSLLGIIPYAGIDLAAYETLKDMSKTYLAND-DPGPLVQLGCGTISGALGATCVYPLQVVRTRMQAQHSSSTTAYSGMSDVFRRTFQHEGLRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 351
+DDE+LA FVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIY YWER YLVDIGEQAVIP+ ISKHVHASKYLIAG VAG ASRTATAPLDRLKVVLQVQT+RASI A++NIW+EGG LGFFRGNGLNV+KVAPESAIKFYTYE+LKN IGDI GE K DIG SGRLVAGGLAGAVAQTAIYPMDLVKTRLQT C+ GKVPSLGKLS+DI V EGPRAFYRG+VPSLLGIIPYAGIDLAAYETLKDMSK Y+ +D +PGP VQLGCGTISGALGATCVYPLQV+RTR+QAQ +++T AY GM DVFRRT +HEG RGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL
Sbjct: 160 IDDEQLASFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHYWERAYLVDIGEQAVIPERISKHVHASKYLIAGAVAGTASRTATAPLDRLKVVLQVQTTRASIGPAIKNIWREGGFLGFFRGNGLNVLKVAPESAIKFYTYEMLKNIIGDIKGEGKDDIGASGRLVAGGLAGAVAQTAIYPMDLVKTRLQTCVCDGGKVPSLGKLSKDIWVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYETLKDMSKRYILHDGEPGPFVQLGCGTISGALGATCVYPLQVIRTRLQAQRTNTTDAYKGMGDVFRRTLEHEGFRGFYKGLFPNLLKVVPAASITYLVYETMKKSLDL 511
| Match Name | Stats | Description |
|---|---|---|
| A0A068TPQ3 | E-Value: 0.000e+0, PID: 88.64 | (Uncharacterized protein {ECO:0000313|EMBL:CDO9829... [more] |
| A0A6P6X532 | E-Value: 0.000e+0, PID: 88.64 | (calcium-binding mitochondrial carrier protein SCa... [more] |
| A0A6P6XD49 | E-Value: 0.000e+0, PID: 88.35 | (calcium-binding mitochondrial carrier protein SCa... [more] |
| A0A6P6XAL5 | E-Value: 0.000e+0, PID: 88.35 | (calcium-binding mitochondrial carrier protein SCa... [more] |
| A0A5B6ZAX9 | E-Value: 0.000e+0, PID: 85.75 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4116... [more] |
| A0A5J5BIE3 | E-Value: 0.000e+0, PID: 86.36 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8542... [more] |
| A0A1J6HZH2 | E-Value: 0.000e+0, PID: 86.12 | (Mitochondrial adenine nucleotide transporter adnt... [more] |
| A0A1U7WIM7 | E-Value: 0.000e+0, PID: 85.84 | (calcium-binding mitochondrial carrier protein SCa... [more] |
| A0A1S4C4R8 | E-Value: 0.000e+0, PID: 85.84 | (calcium-binding mitochondrial carrier protein SCa... [more] |
| A0A2R6QG87 | E-Value: 0.000e+0, PID: 85.80 | (Calcium-binding mitochondrial carrier protein lik... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |