Resource Type:
Polypeptide
Name:
XM_017359685.1
Identifier:
XM_017359685.1-protein
Sequence:
MAFSSALFSASPLRFHPKRPSPFPSLTNPTRKPLSVSAIFPQTIDPLDTT
TIAVIGGSSVAAIAAALSLTDPEKRRQLQAEEVGGGDKEVVREYFNNNGF
QRWKKIYGDTDEVNKVQLDIRIGHAKTVENVMKMLTDDGPLSGVTVCDAG
CGTGCLSIPLAKEGAIVSASDISAAMVSEAEKQARDELLSGDGKLSPAPV
LPKFEVKDLESLDGKYHTVVCLDVLIHYPQNKADAMIAHLASLAEKRLIL
SFAPKTFYYDTLKRIGELFPGPSKATRAYLHSEADVERALRKVGWKINKR
GLTTTNFYFSKIFEAVPV
Sequence Length:
318
Sequence Checksum:
26d4922dd4b8f6eaf0f1e48703b3b4bc
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017359685.1, derives from mRNA, XM_017359685.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017359685.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017359685.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BL64 (Mg-por_mtran_C domain-containing protein {ECO:0000259|Pfam:PF07109} (Fragment))
HSP 1 Score: 514.998 bits (1325), Expect = 0.000e+0
Identity = 256/330 (77.58%), Postives = 285/330 (86.36%), Query Frame = 0
Match: A0A5B7BL64 (Mg-por_mtran_C domain-containing protein {ECO:0000259|Pfam:PF07109} (Fragment))
HSP 1 Score: 514.998 bits (1325), Expect = 0.000e+0
Identity = 256/330 (77.58%), Postives = 285/330 (86.36%), Query Frame = 0
Query: 1 MAFSSALFSASPLRFHPKRPSPFPSLT-----NPTRKPLSVSAIFPQTID--------PLDTTTIAVIGGSSVAAIAAALSLTDPEKRRQLQAEEVGGGDKEVVREYFNNNGFQRWKKIYGDTDEVNKVQLDIRIGHAKTVENVMKMLTDDGPLSGVTVCDAGCGTGCLSIPLAKEGAIVSASDISAAMVSEAEKQARDELLSGDGKLSPAPVLPKFEVKDLESLDGKYHTVVCLDVLIHYPQNKADAMIAHLASLAEKRLILSFAPKTFYYDTLKRIGELFPGPSKATRAYLHSEADVERALRKVGWKINKRGLTTTNFYFSKIFEAVP 317
MA+SSAL +S + FH R +P P+ + TRK L+V+AI P + P D TT+AVIGG SVAA+AA LSLTDPEKRRQLQAEEVGGGDKEVVREYFN +GFQRWKKIYGDTDEVN+VQLDIRIGH+KTVENVMKML ++GPL GVTVCDAGCGTGCLSIPLAK+GAIVSASDISAAMV+EAEKQAR+EL +G+ +LSPAPV+PKFEVKDLESLDGKY TVVCLDVLIHYPQ+KAD MIAHLASLAE RLILSFAPKTFYYD LKR+GELFPGPSKATRAYLHSEADVERAL+KVGW+I KRGLTTT FYF+K+ EAVP
Sbjct: 19 MAYSSAL--SSHVCFHTNR-NPNPTFSPKINKTNTRKHLTVAAIPPLSTAAEVAAVAAPFDGTTLAVIGGGSVAALAAVLSLTDPEKRRQLQAEEVGGGDKEVVREYFNKSGFQRWKKIYGDTDEVNRVQLDIRIGHSKTVENVMKMLAEEGPLQGVTVCDAGCGTGCLSIPLAKQGAIVSASDISAAMVAEAEKQAREELFTGEDELSPAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAENRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHSEADVERALQKVGWRIRKRGLTTTQFYFAKLVEAVP 345
BLAST of XM_017359685.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HE95 ((Methyltransferase {ECO:0000313|EMBL:PIN15818.1}) (2.1.1.11 {ECO:0000313|EMBL:PIN15818.1}))
HSP 1 Score: 505.753 bits (1301), Expect = 9.741e-180
Identity = 250/327 (76.45%), Postives = 277/327 (84.71%), Query Frame = 0
Match: A0A2G9HE95 ((Methyltransferase {ECO:0000313|EMBL:PIN15818.1}) (2.1.1.11 {ECO:0000313|EMBL:PIN15818.1}))
HSP 1 Score: 505.753 bits (1301), Expect = 9.741e-180
Identity = 250/327 (76.45%), Postives = 277/327 (84.71%), Query Frame = 0
Query: 1 MAFSSALFSASPLRFHPKRPSPFPSLTNPTRKPLSVSAIFP---------QTIDPLDTTTIAVIGGSSVAAIAAALSLTDPEKRRQLQAEEVGGGDKEVVREYFNNNGFQRWKKIYGDTDEVNKVQLDIRIGHAKTVENVMKMLTDDGPLSGVTVCDAGCGTGCLSIPLAKEGAIVSASDISAAMVSEAEKQARDELLSGDGKLSPAPVLPKFEVKDLESLDGKYHTVVCLDVLIHYPQNKADAMIAHLASLAEKRLILSFAPKTFYYDTLKRIGELFPGPSKATRAYLHSEADVERALRKVGWKINKRGLTTTNFYFSKIFEAVPV 318
MAFSS L+S P+ F P P R+PL+++A P D LD+TTIAVIGG SVAA+AA LSLTDPEKRRQ+QAEEVGGGDKEVVREYFNN+GFQRW++IYGDTD+VNKVQ DIR+GH+KTVENVMKML D GPLSGVTVCDAGCGTGCLSIPLAKEGAIV+ASDISAAMV+EAEKQAR+ELL G +LS VLPKFEVKDLESLDGKY TV+CLDVLIHYPQ+KADAMIAHLASLA+ RLILSFAPKTFYYD LKR+GELFPGPSKATRAYLH+EADVERAL+KVGW+I KRGL TT FYFS+I EAVPV
Sbjct: 1 MAFSSILYS--PIHFST---LPKPQCHRYRRRPLAITAAIPPLSTAADVAAVSDTLDSTTIAVIGGGSVAALAAVLSLTDPEKRRQMQAEEVGGGDKEVVREYFNNDGFQRWRRIYGDTDDVNKVQKDIRLGHSKTVENVMKMLLDGGPLSGVTVCDAGCGTGCLSIPLAKEGAIVAASDISAAMVAEAEKQAREELLKGKDELSLGLVLPKFEVKDLESLDGKYDTVICLDVLIHYPQSKADAMIAHLASLAKNRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWRIRKRGLITTQFYFSRIVEAVPV 322
BLAST of XM_017359685.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P1MW04 ((Mg-protoporphyrin IX methyltransferase {ECO:0000313|EMBL:AVP39682.1}))
HSP 1 Score: 504.982 bits (1299), Expect = 1.964e-179
Identity = 247/323 (76.47%), Postives = 278/323 (86.07%), Query Frame = 0
Match: A0A2P1MW04 ((Mg-protoporphyrin IX methyltransferase {ECO:0000313|EMBL:AVP39682.1}))
HSP 1 Score: 504.982 bits (1299), Expect = 1.964e-179
Identity = 247/323 (76.47%), Postives = 278/323 (86.07%), Query Frame = 0
Query: 1 MAFSSALFSASPLRFHPKRPSPF-PSLTNPTRKPLSVSAIFPQTIDP-----LDTTTIAVIGGSSVAAIAAALSLTDPEKRRQLQAEEVGGGDKEVVREYFNNNGFQRWKKIYGDTDEVNKVQLDIRIGHAKTVENVMKMLTDDGPLSGVTVCDAGCGTGCLSIPLAKEGAIVSASDISAAMVSEAEKQARDELLSGDGKLSPAPVLPKFEVKDLESLDGKYHTVVCLDVLIHYPQNKADAMIAHLASLAEKRLILSFAPKTFYYDTLKRIGELFPGPSKATRAYLHSEADVERALRKVGWKINKRGLTTTNFYFSKIFEAVP 317
MA+SSAL +SPL H + F P L K L+VSAI P + +D TT+AVIGGSSVAA+AA +SLTDPEKRRQ+QAEEVGGGDKEVVREYFNN GFQRWKKIYG+ ++VN+VQLDIRIGH+KTVENV++ML D+G L GVTVCDAGCGTGCLSIPLAK+GAIVSASDISAAMV+EAEKQAR+ELL+ +LSPAPV+PKFEVKDLESLDGKY TVVCLDVLIHYPQNKADAMIAHLASLA+ RLILSFAPKT YYD LKR+GELFPGPSKATRAYLH+EADVERALRKVGW+I K+GL TT FYFS++ EAVP
Sbjct: 1 MAYSSAL--SSPLYLHTNPNTKFSPKLNKSNCKSLTVSAIPPLSTAADVSAAVDGTTLAVIGGSSVAALAAVISLTDPEKRRQIQAEEVGGGDKEVVREYFNNTGFQRWKKIYGEAEDVNRVQLDIRIGHSKTVENVIQMLIDEGSLEGVTVCDAGCGTGCLSIPLAKQGAIVSASDISAAMVAEAEKQAREELLTSKDELSPAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQNKADAMIAHLASLADNRLILSFAPKTLYYDLLKRVGELFPGPSKATRAYLHAEADVERALRKVGWRIRKKGLITTQFYFSRLIEAVP 321
BLAST of XM_017359685.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P1MW17 ((Mg-protoporphyrin IX methyltransferase {ECO:0000313|EMBL:AVP39683.1}))
HSP 1 Score: 503.056 bits (1294), Expect = 9.409e-179
Identity = 247/323 (76.47%), Postives = 277/323 (85.76%), Query Frame = 0
Match: A0A2P1MW17 ((Mg-protoporphyrin IX methyltransferase {ECO:0000313|EMBL:AVP39683.1}))
HSP 1 Score: 503.056 bits (1294), Expect = 9.409e-179
Identity = 247/323 (76.47%), Postives = 277/323 (85.76%), Query Frame = 0
Query: 1 MAFSSALFSASPLRFHPK-RPSPFPSLTNPTRKPLSVSAIFPQTIDP-----LDTTTIAVIGGSSVAAIAAALSLTDPEKRRQLQAEEVGGGDKEVVREYFNNNGFQRWKKIYGDTDEVNKVQLDIRIGHAKTVENVMKMLTDDGPLSGVTVCDAGCGTGCLSIPLAKEGAIVSASDISAAMVSEAEKQARDELLSGDGKLSPAPVLPKFEVKDLESLDGKYHTVVCLDVLIHYPQNKADAMIAHLASLAEKRLILSFAPKTFYYDTLKRIGELFPGPSKATRAYLHSEADVERALRKVGWKINKRGLTTTNFYFSKIFEAVP 317
MA+SSAL +SPL H P P L K L+VSAI P + +D TT+AVIGGSSVAA+AA +SLTDPEKRRQ+QAEEVGGGDKEVVREYFNN GFQRWKKIYG+ ++VN+VQLDIRIGH+KTVENV++ML D+G L GVTVCDAGCGTGCLSIPLAK+GAIVSASDISAAMV+EAEKQAR+ELL+ +LSPAPV+PKFEVKDLESLDGKY TVVCLDVLIHYPQNKADAMIAHLASLA+ RLILSFAPKT YYD LKR+GELFPGPSKATRAYLH+EADVERALRKVGW+I K+GL TT FYFS++ EAVP
Sbjct: 1 MAYSSAL--SSPLYLHTNPNPKFSPKLNKSNCKSLTVSAIPPLSTAADVSAAVDGTTLAVIGGSSVAALAAVISLTDPEKRRQIQAEEVGGGDKEVVREYFNNTGFQRWKKIYGEAEDVNRVQLDIRIGHSKTVENVIQMLIDEGSLEGVTVCDAGCGTGCLSIPLAKQGAIVSASDISAAMVAEAEKQAREELLTSKDELSPAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQNKADAMIAHLASLADNRLILSFAPKTLYYDLLKRVGELFPGPSKATRAYLHAEADVERALRKVGWRIRKKGLITTQFYFSRLIEAVP 321
BLAST of XM_017359685.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0H2K4 ((Magnesium-protoporphyrin IX methyltransferase {ECO:0000313|EMBL:GFZ17316.1}))
HSP 1 Score: 502.671 bits (1293), Expect = 1.670e-178
Identity = 248/321 (77.26%), Postives = 279/321 (86.92%), Query Frame = 0
Match: A0A7J0H2K4 ((Magnesium-protoporphyrin IX methyltransferase {ECO:0000313|EMBL:GFZ17316.1}))
HSP 1 Score: 502.671 bits (1293), Expect = 1.670e-178
Identity = 248/321 (77.26%), Postives = 279/321 (86.92%), Query Frame = 0
Query: 1 MAFSSALFSASPLRFHPK-RPSPFPSLTNPTRKPLSVSAIFPQTIDP---LDTTTIAVIGGSSVAAIAAALSLTDPEKRRQLQAEEVGGGDKEVVREYFNNNGFQRWKKIYGDTDEVNKVQLDIRIGHAKTVENVMKMLTDDGPLSGVTVCDAGCGTGCLSIPLAKEGAIVSASDISAAMVSEAEKQARDELLSGDGKLSPAPVLPKFEVKDLESLDGKYHTVVCLDVLIHYPQNKADAMIAHLASLAEKRLILSFAPKTFYYDTLKRIGELFPGPSKATRAYLHSEADVERALRKVGWKINKRGLTTTNFYFSKIFEAVP 317
MA SS LFSA L FH P +P L + RK AI P + +D TTIAVIGG SVAA+AA LSL+DPEKRRQ QAEEVGGGDKEVVREYFNNNGF+RWKKIYG+TD+VN+VQLDIRIGH+KTVENV+KMLTD+GPL+GVTVCDAGCGTGCL+IPLAKEGAIV+A+DISAAMV+EAEKQAR+ELL+G +LSPAPV+PKFEVKDLESL+GKY TVVCLDVLIHYPQ+KAD MIAHLASLA+KRL+LSFAPKT YYD LKR+GELFPGPSKATRAYLH+EADVERALRKVGW+I KRGL TT FYFS++ EAVP
Sbjct: 1 MACSSPLFSA--LCFHTNVSPKLYPKLNHTYRKKPIAPAIPPLSAAADVAVDGTTIAVIGGGSVAALAAVLSLSDPEKRRQAQAEEVGGGDKEVVREYFNNNGFERWKKIYGETDDVNRVQLDIRIGHSKTVENVIKMLTDEGPLNGVTVCDAGCGTGCLAIPLAKEGAIVTATDISAAMVAEAEKQAREELLTGKDELSPAPVMPKFEVKDLESLEGKYDTVVCLDVLIHYPQSKADGMIAHLASLADKRLLLSFAPKTLYYDLLKRVGELFPGPSKATRAYLHAEADVERALRKVGWRIRKRGLITTQFYFSRLIEAVP 319
BLAST of XM_017359685.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PDD8 ((Magnesium protoporphyrin IX methyltransferase {ECO:0000313|EMBL:PSR89413.1}))
HSP 1 Score: 500.36 bits (1287), Expect = 1.161e-177
Identity = 251/323 (77.71%), Postives = 283/323 (87.62%), Query Frame = 0
Match: A0A2R6PDD8 ((Magnesium protoporphyrin IX methyltransferase {ECO:0000313|EMBL:PSR89413.1}))
HSP 1 Score: 500.36 bits (1287), Expect = 1.161e-177
Identity = 251/323 (77.71%), Postives = 283/323 (87.62%), Query Frame = 0
Query: 1 MAFSSALFSASPLRFHPK-RPSPFPSLTNPT--RKPLSVSAIFPQTIDP---LDTTTIAVIGGSSVAAIAAALSLTDPEKRRQLQAEEVGGGDKEVVREYFNNNGFQRWKKIYGDTDEVNKVQLDIRIGHAKTVENVMKMLTDDGPLSGVTVCDAGCGTGCLSIPLAKEGAIVSASDISAAMVSEAEKQARDELLSGDGKLSPAPVLPKFEVKDLESLDGKYHTVVCLDVLIHYPQNKADAMIAHLASLAEKRLILSFAPKTFYYDTLKRIGELFPGPSKATRAYLHSEADVERALRKVGWKINKRGLTTTNFYFSKIFEAVP 317
MA SS LFSA L FH P FP L NPT +KP++ AI P + +D TTIAVIGG SVAA+AA LSL+DPEKRRQ QAEEVGGGDKEVVREYFNNNGF+RWKKIYG+TD+VN+VQLDIRIGH+KTVENV+KMLTD+GPL+GVTVCDAGCGTGCL+IPLAKEGAIV+A+DISAAMV+EAEKQAR+EL +G +LSPAPV+PKFEVKDLESL+GKY TVVCLDVLIHYPQ+KAD MIAHLASLA+KRL+LSFAPKT YYD LKR+GELFPGPSKATRAYLH+EADVERALRKVGW+I KRGL TT FYFS++ EAVP
Sbjct: 1 MACSSPLFSA--LCFHTNVSPKLFPKL-NPTYRKKPIA-PAIPPLSAAADVAVDGTTIAVIGGGSVAALAAVLSLSDPEKRRQAQAEEVGGGDKEVVREYFNNNGFERWKKIYGETDDVNRVQLDIRIGHSKTVENVIKMLTDEGPLNGVTVCDAGCGTGCLAIPLAKEGAIVTATDISAAMVAEAEKQAREELFTGKDELSPAPVMPKFEVKDLESLEGKYDTVVCLDVLIHYPQSKADGMIAHLASLADKRLLLSFAPKTLYYDLLKRVGELFPGPSKATRAYLHAEADVERALRKVGWRIRKRGLITTQFYFSRLIEAVP 319
BLAST of XM_017359685.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200QGZ1 ((Methyltransferase small domain {ECO:0000313|EMBL:OVA09675.1}))
HSP 1 Score: 500.36 bits (1287), Expect = 1.077e-176
Identity = 245/330 (74.24%), Postives = 277/330 (83.94%), Query Frame = 0
Match: A0A200QGZ1 ((Methyltransferase small domain {ECO:0000313|EMBL:OVA09675.1}))
HSP 1 Score: 500.36 bits (1287), Expect = 1.077e-176
Identity = 245/330 (74.24%), Postives = 277/330 (83.94%), Query Frame = 0
Query: 1 MAFSSALFSASPLRFHPKRPSPFPS-----------LTNPTRK--PLSVSAIFPQTIDPLDTTTIAVIGGSSVAAIAAALSLTDPEKRRQLQAEEVGGGDKEVVREYFNNNGFQRWKKIYGDTDEVNKVQLDIRIGHAKTVENVMKMLTDDGPLSGVTVCDAGCGTGCLSIPLAKEGAIVSASDISAAMVSEAEKQARDELLSGDGKLSPAPVLPKFEVKDLESLDGKYHTVVCLDVLIHYPQNKADAMIAHLASLAEKRLILSFAPKTFYYDTLKRIGELFPGPSKATRAYLHSEADVERALRKVGWKINKRGLTTTNFYFSKIFEAVP 317
MAFS+ + +SPL FH K P+P S L PT+ PLS + P D+TT+AV+GG S+AA+AA LS+ DPEKRRQLQAEEVGGGDKEVVREYFNN+GFQRWKKIYG+TD+VNKVQLDIR+GH+KTVENVM MLT++G L GVTVCDAGCGTG LSIPLAK+GAIVSASDISAAMV+EAEKQAR+ LLS DG S APV+PKF V DLESLDGKYHTVVCLDVLIHYPQ+KADAMIAHLASLA++RL+LSFAPKTFYYD LKR+GELFPGPSKATRAYLH+EADVERAL+KVGW+I KRGL TT FYFSK+ EAVP
Sbjct: 54 MAFSTVV--SSPLNFHTKNPNPNHSPPTFNKTKTKTLITPTKAVPPLSTATDVSAITAPFDSTTLAVLGGGSIAALAAVLSIADPEKRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNKVQLDIRLGHSKTVENVMTMLTEEGSLEGVTVCDAGCGTGLLSIPLAKQGAIVSASDISAAMVAEAEKQAREALLSSDGS-SLAPVMPKFTVSDLESLDGKYHTVVCLDVLIHYPQSKADAMIAHLASLADERLLLSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWRIRKRGLVTTQFYFSKLVEAVP 380
BLAST of XM_017359685.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3A2V2 ((magnesium protoporphyrin IX methyltransferase, chloroplastic {ECO:0000313|RefSeq:XP_016563058.1}))
HSP 1 Score: 496.123 bits (1276), Expect = 4.840e-176
Identity = 245/321 (76.32%), Postives = 274/321 (85.36%), Query Frame = 0
Match: A0A2G3A2V2 ((magnesium protoporphyrin IX methyltransferase, chloroplastic {ECO:0000313|RefSeq:XP_016563058.1}))
HSP 1 Score: 496.123 bits (1276), Expect = 4.840e-176
Identity = 245/321 (76.32%), Postives = 274/321 (85.36%), Query Frame = 0
Query: 1 MAFSSALFSASPLRFHPKRPSPFPSLTNPT-RKPLSVSAIFPQTI---DPLDTTTIAVIGGSSVAAIAAALSLTDPEKRRQLQAEEVGGGDKEVVREYFNNNGFQRWKKIYGDTDEVNKVQLDIRIGHAKTVENVMKMLTDDGPLSGVTVCDAGCGTGCLSIPLAKEGAIVSASDISAAMVSEAEKQARDELLSGDGKLSPAPVLPKFEVKDLESLDGKYHTVVCLDVLIHYPQNKADAMIAHLASLAEKRLILSFAPKTFYYDTLKRIGELFPGPSKATRAYLHSEADVERALRKVGWKINKRGLTTTNFYFSKIFEAVP 317
MAF S LFS P+ F + P T P R+ ++SAI P + PLD TT+AV+GGSSVAA+AA LSLTDPE+RRQLQAEEVGGGDKEVVREYFNNNGF RWKKIYGDTD+VNKVQLDIR+GH+KTVENVMKMLT++G L GVTVCDAGCGTGCLSIPLAKEGAIVSASDISA+MV+EA+KQA++ELL L+P PV+PKFEVKDLESLDGKY TVVCLDV+IHYPQ+KAD MIAHLASLAE RLILSFAPKTFYYD LKRIGELFPGPSKATRAYLH+EADVE+AL+K GWKI KRGL T FYF+K+ EAVP
Sbjct: 1 MAFCSPLFS--PVNF-----AVVPKHTKPNYRRNFTISAIPPLSTAITSPLDGTTLAVLGGSSVAALAAILSLTDPERRRQLQAEEVGGGDKEVVREYFNNNGFDRWKKIYGDTDDVNKVQLDIRLGHSKTVENVMKMLTEEGSLKGVTVCDAGCGTGCLSIPLAKEGAIVSASDISASMVAEAQKQAQEELLKAKDDLAPTPVMPKFEVKDLESLDGKYDTVVCLDVMIHYPQSKADGMIAHLASLAENRLILSFAPKTFYYDLLKRIGELFPGPSKATRAYLHAEADVEKALQKAGWKIRKRGLIATQFYFAKLIEAVP 314
BLAST of XM_017359685.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8G303 ((Magnesium protoporphyrin IX methyltransferase, chloroplastic {ECO:0000313|EMBL:PHT88569.1}))
HSP 1 Score: 496.123 bits (1276), Expect = 4.840e-176
Identity = 245/321 (76.32%), Postives = 274/321 (85.36%), Query Frame = 0
Match: A0A1U8G303 ((Magnesium protoporphyrin IX methyltransferase, chloroplastic {ECO:0000313|EMBL:PHT88569.1}))
HSP 1 Score: 496.123 bits (1276), Expect = 4.840e-176
Identity = 245/321 (76.32%), Postives = 274/321 (85.36%), Query Frame = 0
Query: 1 MAFSSALFSASPLRFHPKRPSPFPSLTNPT-RKPLSVSAIFPQTI---DPLDTTTIAVIGGSSVAAIAAALSLTDPEKRRQLQAEEVGGGDKEVVREYFNNNGFQRWKKIYGDTDEVNKVQLDIRIGHAKTVENVMKMLTDDGPLSGVTVCDAGCGTGCLSIPLAKEGAIVSASDISAAMVSEAEKQARDELLSGDGKLSPAPVLPKFEVKDLESLDGKYHTVVCLDVLIHYPQNKADAMIAHLASLAEKRLILSFAPKTFYYDTLKRIGELFPGPSKATRAYLHSEADVERALRKVGWKINKRGLTTTNFYFSKIFEAVP 317
MAF S LFS P+ F + P T P R+ ++SAI P + PLD TT+AV+GGSSVAA+AA LSLTDPE+RRQLQAEEVGGGDKEVVREYFNNNGF RWKKIYGDTD+VNKVQLDIR+GH+KTVENVMKMLT++G L GVTVCDAGCGTGCLSIPLAKEGAIVSASDISA+MV+EA+KQA++ELL L+P PV+PKFEVKDLESLDGKY TVVCLDV+IHYPQ+KAD MIAHLASLAE RLILSFAPKTFYYD LKRIGELFPGPSKATRAYLH+EADVE+AL+K GWKI KRGL T FYF+K+ EAVP
Sbjct: 1 MAFCSPLFS--PVNF-----AVVPKHTKPNYRRNFTISAIPPLSTAITSPLDGTTLAVLGGSSVAALAAILSLTDPERRRQLQAEEVGGGDKEVVREYFNNNGFDRWKKIYGDTDDVNKVQLDIRLGHSKTVENVMKMLTEEGSLKGVTVCDAGCGTGCLSIPLAKEGAIVSASDISASMVAEAQKQAQEELLKAKDDLAPTPVMPKFEVKDLESLDGKYDTVVCLDVMIHYPQSKADGMIAHLASLAENRLILSFAPKTFYYDLLKRIGELFPGPSKATRAYLHAEADVEKALQKAGWKIRKRGLIATQFYFAKLIEAVP 314
BLAST of XM_017359685.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3CZN3 ((Magnesium protoporphyrin IX methyltransferase, chloroplastic {ECO:0000313|EMBL:PHU24202.1}))
HSP 1 Score: 494.967 bits (1273), Expect = 1.138e-175
Identity = 244/321 (76.01%), Postives = 274/321 (85.36%), Query Frame = 0
Match: A0A2G3CZN3 ((Magnesium protoporphyrin IX methyltransferase, chloroplastic {ECO:0000313|EMBL:PHU24202.1}))
HSP 1 Score: 494.967 bits (1273), Expect = 1.138e-175
Identity = 244/321 (76.01%), Postives = 274/321 (85.36%), Query Frame = 0
Query: 1 MAFSSALFSASPLRFHPKRPSPFPSLTNPT-RKPLSVSAIFPQTI---DPLDTTTIAVIGGSSVAAIAAALSLTDPEKRRQLQAEEVGGGDKEVVREYFNNNGFQRWKKIYGDTDEVNKVQLDIRIGHAKTVENVMKMLTDDGPLSGVTVCDAGCGTGCLSIPLAKEGAIVSASDISAAMVSEAEKQARDELLSGDGKLSPAPVLPKFEVKDLESLDGKYHTVVCLDVLIHYPQNKADAMIAHLASLAEKRLILSFAPKTFYYDTLKRIGELFPGPSKATRAYLHSEADVERALRKVGWKINKRGLTTTNFYFSKIFEAVP 317
MAF S LFS P+ F + P T P R+ ++SAI P + PLD TT+AV+GGSSVAA+AA LSLTDPE+RRQLQAEEVGGGDKEVVREYFNNNGF RWKKIYGDTD+VNKVQLDIR+GH+KTVENVMKMLT++G L GVTVCDAGCGTGCLSIPLAKEGAIVSASDISA+MV+EA+KQA++ELL L+P PV+PKFEV+DLESLDGKY TVVCLDV+IHYPQ+KAD MIAHLASLAE RLILSFAPKTFYYD LKRIGELFPGPSKATRAYLH+EADVE+AL+K GWKI KRGL T FYF+K+ EAVP
Sbjct: 1 MAFCSPLFS--PVNF-----AVVPKHTKPNYRRNFTISAIPPLSTAITSPLDGTTLAVLGGSSVAALAAILSLTDPERRRQLQAEEVGGGDKEVVREYFNNNGFDRWKKIYGDTDDVNKVQLDIRLGHSKTVENVMKMLTEEGSLKGVTVCDAGCGTGCLSIPLAKEGAIVSASDISASMVAEAQKQAQEELLKAKDDLAPTPVMPKFEVQDLESLDGKYDTVVCLDVMIHYPQSKADGMIAHLASLAENRLILSFAPKTFYYDLLKRIGELFPGPSKATRAYLHAEADVEKALQKAGWKIRKRGLIATQFYFAKLIEAVP 314
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BL64 | E-Value: 0.000e+0, PID: 77.58 | Mg-por_mtran_C domain-containing protein {ECO:0000... [more] |
| A0A2G9HE95 | E-Value: 9.741e-180, PID: 76.45 | (Methyltransferase {ECO:0000313|EMBL:PIN15818.1}) ... [more] |
| A0A2P1MW04 | E-Value: 1.964e-179, PID: 76.47 | (Mg-protoporphyrin IX methyltransferase {ECO:00003... [more] |
| A0A2P1MW17 | E-Value: 9.409e-179, PID: 76.47 | (Mg-protoporphyrin IX methyltransferase {ECO:00003... [more] |
| A0A7J0H2K4 | E-Value: 1.670e-178, PID: 77.26 | (Magnesium-protoporphyrin IX methyltransferase {EC... [more] |
| A0A2R6PDD8 | E-Value: 1.161e-177, PID: 77.71 | (Magnesium protoporphyrin IX methyltransferase {EC... [more] |
| A0A200QGZ1 | E-Value: 1.077e-176, PID: 74.24 | (Methyltransferase small domain {ECO:0000313|EMBL:... [more] |
| A0A2G3A2V2 | E-Value: 4.840e-176, PID: 76.32 | (magnesium protoporphyrin IX methyltransferase, ch... [more] |
| A0A1U8G303 | E-Value: 4.840e-176, PID: 76.32 | (Magnesium protoporphyrin IX methyltransferase, ch... [more] |
| A0A2G3CZN3 | E-Value: 1.138e-175, PID: 76.01 | (Magnesium protoporphyrin IX methyltransferase, ch... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |