Resource Type:
Polypeptide
Name:
XM_017364360.1
Identifier:
XM_017364360.1-protein
Sequence:
MADEIAHELAELEALAPLDPVETQAGSVEATIESNAVGGTESTCNTTKQP
VAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHY
GELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLR
SVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDL
GEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLERED
IEASTSDYLKALSMLERLAEPDSRQIASLNFRISLCLEIGDKTQEAIPYC
QKAISICNSRIKRLMDEAQNPSALNSPVSNQSVEISSSVPLESAADKEKE
IETLTSLLGDLEKKLEDMQLLASNPPAPVLPDLMAILAAQAKGMEKGASS
AGVSSSRFGAATSGNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSE
STDSSPMKKAALDPPADKANDKAS
Sequence Length:
474
Sequence Checksum:
d636762b811ba3c33b42bb94c2f1182a
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364360.1, derives from mRNA, XM_017364360.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364360.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364360.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PAK5 ((Uncharacterized protein {ECO:0000313|EMBL:PSR88015.1}))
HSP 1 Score: 509.605 bits (1311), Expect = 2.566e-176
Identity = 286/482 (59.34%), Postives = 359/482 (74.48%), Query Frame = 0
Match: A0A2R6PAK5 ((Uncharacterized protein {ECO:0000313|EMBL:PSR88015.1}))
HSP 1 Score: 509.605 bits (1311), Expect = 2.566e-176
Identity = 286/482 (59.34%), Postives = 359/482 (74.48%), Query Frame = 0
Query: 1 MADEIAHELAELEALAPLDPVETQAGSVEATIESNAVGGTESTCNTTK-QPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQNPSALNSPV----SNQSVEISS--SVPLESAADKEKEIETLTSLLGDLEKKLEDMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAATSG-NLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 474
M DE A + +APL+ +TQA SVEATIESN +GG ES+CN + A +SD E SL+ A+ELME+G KA+KD DYAEA+DCYSRALEIR H+GEL+PECVNAY+KYG ALLYKAQ+EAD LG VPKKE + DK GS+++ + ESS SV+ +A ++ SS H D ++ +GKD+ E+D SD EDL EADEDESDLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LERED+E S SDYLK L++LERL EPDSR+IA LNFRI LCLEIG K +EAIPYCQKAISIC SR++RL++E ++PS S+++ + SS S S DKE EIETL L G+LEKKLED+ L SNP + +L D++ +++A+A+G+EK ASS+ SS + G A+S +L+SPT+STAHTNGAA VT LGVVGRG+KR M+S + +SSPMKK+ LDP DK + +AS
Sbjct: 1 MTDE-----APISEIAPLNGDKTQA-SVEATIESNTLGGAESSCNNNDVETSALTSDGERGKSLEYAEELMERGSKAAKDGDYAEATDCYSRALEIRVVHFGELAPECVNAYYKYGCALLYKAQEEADPLGTVPKKEGESQQFSDKIGSVKNAINGESSVASVLSNAEQDDSSNHGDGAPHDGSSGKDQEEEDEESDAEDLAEADEDESDLDLAWKMLDVARAIVEKHSGDTMEKVDILSALAEVALEREDVETSLSDYLKGLAILERLVEPDSRRIAELNFRICLCLEIGSKAEEAIPYCQKAISICKSRVQRLVNELKSPSVSTGTSAASESDETGQFSSNGSQTSHSVVDKEAEIETLGGLSGELEKKLEDLLQLVSNPTS-ILSDILGMVSAKARGIEKNASSSVTSSPQLGVASSSRDLDSPTVSTAHTNGAAGVTDLGVVGRGIKRTRMNSVAAESSPMKKSELDPTTDKGDGQAS 475
BLAST of XM_017364360.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZYJ8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49094.1}))
HSP 1 Score: 493.426 bits (1269), Expect = 6.686e-170
Identity = 289/474 (60.97%), Postives = 362/474 (76.37%), Query Frame = 0
Match: A0A5B6ZYJ8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49094.1}))
HSP 1 Score: 493.426 bits (1269), Expect = 6.686e-170
Identity = 289/474 (60.97%), Postives = 362/474 (76.37%), Query Frame = 0
Query: 13 EALAPLDPVETQAGSVEATIESNAVGGTESTCNTTK-----QPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQ-NPSAL---NSPVSNQSVEISSSVPL--ESAADKEKEIETLTSLLGDLEKKLEDMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAA-TSGNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 474
E +AP + V++QA S+EATIESNA GGTES+CN + A +SD + SL+ ADELME+G KA K+ DYAEA++C+SRALEIR +HYGEL+ ECVNAY+KYG ALLYKAQ+EAD L AVPKKE + DKDGS++S + ESS S +A ++ SS HQ+ ++ GK++ EDD SD EDL E D+DESDLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LERED+E S SDYLKALS+LE L EPDSR IA LNFRI LCLEIG K QEAIPYCQKAIS+CNS+++RLM E + +P + ++PV +Q+V+ SS+ +S ADKE EIETL L G+LEKKLED+Q L SNP + +L D+M +++A+++G EK SSA +SSS+ GAA +SG+ +SPT+STAHTNGA+ VTHLGVVGRG+KRV +SES +S+PMKK ALDP ADK + AS
Sbjct: 9 ETVAP-NVVQSQA-SIEATIESNAQGGTESSCNNNNNNNNAETSALTSDADREKSLEYADELMERGSKALKENDYAEATECFSRALEIRVAHYGELALECVNAYYKYGCALLYKAQEEADPLAAVPKKEGESQQDCDKDGSVKSAINGESSVASASSNAEEDASSNHQEGAPDDVSGGKEQEEDDEESDVEDLAEVDDDESDLDLAWKMLDLARAIVEKHSGDTMEKVDILSALAEVALEREDVETSLSDYLKALSILECLVEPDSRHIAELNFRICLCLEIGSKAQEAIPYCQKAISVCNSQVQRLMCEVKTSPGSTVTSSAPVFDQTVQHSSNGLQCDDSVADKEAEIETLAGLSGELEKKLEDLQQLVSNPKS-ILSDIMGMMSAKSRGTEKSVSSAVMSSSQMGAANSSGDFDSPTVSTAHTNGASGVTHLGVVGRGIKRVSTNSESAESNPMKKPALDPSADKGDGNAS 479
BLAST of XM_017364360.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RLB9 ((Uncharacterized protein {ECO:0000313|EMBL:PSS30785.1}))
HSP 1 Score: 489.574 bits (1259), Expect = 1.552e-168
Identity = 284/482 (58.92%), Postives = 356/482 (73.86%), Query Frame = 0
Match: A0A2R6RLB9 ((Uncharacterized protein {ECO:0000313|EMBL:PSS30785.1}))
HSP 1 Score: 489.574 bits (1259), Expect = 1.552e-168
Identity = 284/482 (58.92%), Postives = 356/482 (73.86%), Query Frame = 0
Query: 1 MADEIAHELAELEALAPLDPVETQAGSVEATIESNAVGGTESTCNTTK-QPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQNPSALNSPV----SNQSVEI--SSSVPLESAADKEKEIETLTSLLGDLEKKLEDMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFG-AATSGNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 474
MADE A + +AP + ++QA SVEATIESN VGG ES+CN + A +SD E SL ADELME+G A+KD+DYAEA+DCYSRALEIR H+GEL+PECVNAY+KYG ALLYKAQ+EAD LG VPKKE D++GS+++ + ESS SV +A ++GSS D V ++ +GKD+ EDD SD EDL EADEDESDLDLAWKMLD+ARAI K DTMEKVDILSALAEV+LERED+E S SDYLKAL++LERL EPD+R IA LNFRI LCLEIG K EAIPYCQKA+SIC +R++RL++E ++ S S+++V+ S S S DK+ EIETLT L +LEKKLED+Q L SNP + +L D++ +++A+A+G+EK ASS+ +SS + G A++SG+L+SPT+STAHTNGAA VT LGVVGRGVKR M+S + +SSPMKK LDP DK +AS
Sbjct: 1 MADE-----APISEIAPPNAEKSQA-SVEATIESNTVGGAESSCNNNDVESSAVTSDGERERSLGYADELMERGSNAAKDRDYAEATDCYSRALEIRVGHFGELAPECVNAYYKYGCALLYKAQEEADPLGTVPKKEVESPQLSDRNGSVKNAINRESSIASVSSNAEQDGSSNRGDGVPDDGSSGKDQEEDDEESDDEDLAEADEDESDLDLAWKMLDVARAIVVKHCGDTMEKVDILSALAEVALEREDVETSLSDYLKALAILERLVEPDNRHIAELNFRICLCLEIGSKAAEAIPYCQKAMSICKARVQRLVNELKSSSVSTGTSAASESDETVQFSSSGSQSNHSVVDKDAEIETLTGLSSELEKKLEDLQQLVSNPTS-ILSDILGMVSARARGIEKNASSSVMSSPQLGVASSSGDLDSPTVSTAHTNGAAGVTDLGVVGRGVKRTRMNSVTAESSPMKKPELDPTPDKGEGQAS 475
BLAST of XM_017364360.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A240 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49093.1}))
HSP 1 Score: 488.804 bits (1257), Expect = 3.688e-168
Identity = 281/474 (59.28%), Postives = 356/474 (75.11%), Query Frame = 0
Match: A0A5B7A240 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49093.1}))
HSP 1 Score: 488.804 bits (1257), Expect = 3.688e-168
Identity = 281/474 (59.28%), Postives = 356/474 (75.11%), Query Frame = 0
Query: 13 EALAPLDPVETQAGSVEATIESNAVGGTESTCNTTK-----QPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTED--LGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQ----NPSALNSPVSNQSVEISSSVPLESAADKEKEIETLTSLLGDLEKKLEDMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAA-TSGNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 474
E +AP + V++QA S+EATIESNA GGTES+CN + A +SD + SL+ ADELME+G KA K+ DYAEA++C+SRALEIR +HYGEL+ ECVNAY+KYG ALLYKAQ+EAD L AVPKKE + DKDGS+++ + ESSA SV +A ++GSS +Q+ + +GK+ E+++ +++ L EADEDE+DLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LEREDIE S SDYLKALS+LERL EPD+R IA LNFRI LCLEIG K QEAIPYCQKAIS+C SR+++LM+E + + ++ +P S+ +V+ SS DKE EI TLT L +LEKKLED+Q L SNP + +L D++ +++A+ +G E GA SA +SSSR GAA +SGN +SPT+STAHTNGAA VTHLGVVGRGVKRV+M+S S+DS MKK ALDP K + AS
Sbjct: 9 ETVAP-NVVQSQA-SIEATIESNAQGGTESSCNNNNNNNNAETSALTSDADREKSLEYADELMERGSKALKENDYAEATECFSRALEIRVAHYGELALECVNAYYKYGCALLYKAQEEADPLAAVPKKEGESQQDSDKDGSVKTAVTCESSAASVSSNAEQDGSSINQEGAPDNVSSGKEVEEEEDEEESDVEDLAEADEDETDLDLAWKMLDVARAIVEKHSGDTMEKVDILSALAEVALEREDIETSLSDYLKALSILERLVEPDNRHIAELNFRICLCLEIGLKAQEAIPYCQKAISVCQSRVQQLMNEMKSSTGSTASSAAPESDHTVQYSSX-------DKEAEILTLTGLSSELEKKLEDLQQLVSNPTS-ILSDILGMMSAKVRGAENGA-SAVMSSSRMGAANSSGNFDSPTVSTAHTNGAAGVTHLGVVGRGVKRVLMNSGSSDSDSMKKPALDPSPGKDDGNAS 471
BLAST of XM_017364360.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5APR9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8531776.1}))
HSP 1 Score: 485.337 bits (1248), Expect = 9.557e-167
Identity = 282/471 (59.87%), Postives = 349/471 (74.10%), Query Frame = 0
Match: A0A5J5APR9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8531776.1}))
HSP 1 Score: 485.337 bits (1248), Expect = 9.557e-167
Identity = 282/471 (59.87%), Postives = 349/471 (74.10%), Query Frame = 0
Query: 13 EALAPLDPVETQAGSVEATIESNAVGGTESTCNTTKQPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNE-DDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQ----NPSALNSPVSNQSVEISSSVPLE---SAADKEKEIETLTSLLGDLEKKLEDMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAA-TSGNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 474
E +AP VE S+EATIES GG +S+CN T + A +SD + SL+ A+ELM+KG KA K+ DYAEA+DC+SRALEIRA+HYGEL+ ECVNAY+KYG +LLYKAQDEAD L VPKK+ + DKDGS +S + ESS SV +A ++ SS HQ+ ++ +G + EDD SD EDL EADEDESDLDLAWKMLD+ARAI EK +TMEKVDILSALAEV+LERED+E S SDYLKALS+LER+ EPDSR IA LNFRI LCLEIG K EAIPYCQKAISIC SR++RLM+E + + + ++P +Q+V+ SS+ LE S ADKE EIETLT + +LEKKLED+Q L SNP + +L D++A+++A++ G EK AS A +SSSR G A +SG+ +SPT+STAHTNGA VT LGVVGRGVKRV M S S + +PMKK ALDP ADK + AS
Sbjct: 9 ETVAP--NVEQSQVSIEATIESKVQGGPDSSCNNTVETSALTSDAGHEKSLEFAEELMKKGSKAQKEHDYAEATDCFSRALEIRAAHYGELALECVNAYYKYGCSLLYKAQDEADPLATVPKKDSESQQDSDKDGSTKSAINGESSVASVSSNAEEDASSNHQESAPDDVSGSGNGQEEDDEESDVEDLAEADEDESDLDLAWKMLDVARAIVEKHPGNTMEKVDILSALAEVALEREDVETSLSDYLKALSILERVVEPDSRHIADLNFRICLCLEIGSKADEAIPYCQKAISICKSRVQRLMNELKSSSGSTATSSAPEFDQTVQHSSN-GLECDDSVADKEAEIETLTGVSSELEKKLEDLQQLVSNPKS-ILSDILAMMSAKSSGTEKSASLAVMSSSRMGTANSSGDFDSPTVSTAHTNGATGVTDLGVVGRGVKRVSMSSGSAECNPMKKPALDPSADKGDGNAS 475
BLAST of XM_017364360.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QNV8 ((Uncharacterized protein {ECO:0000313|EMBL:KAE7999840.1}))
HSP 1 Score: 483.411 bits (1243), Expect = 7.677e-166
Identity = 279/473 (58.99%), Postives = 345/473 (72.94%), Query Frame = 0
Match: A0A5N6QNV8 ((Uncharacterized protein {ECO:0000313|EMBL:KAE7999840.1}))
HSP 1 Score: 483.411 bits (1243), Expect = 7.677e-166
Identity = 279/473 (58.99%), Postives = 345/473 (72.94%), Query Frame = 0
Query: 15 LAPLDPVETQAGSVEATIESNAVGGTESTCNTTKQPVAE------SSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNED--DAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQN-PSALNSPVS---NQSVEISSSVPLESAADKEKEIETLTSLLGDLEKKLEDMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAATS-GNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 474
+A +P+ETQ S EATI+SN GGTESTCN SS + SL+ ADELMEKG KA KD D++EA++C+SRALEIR +HYGELSPECV+AY+KYG ALLYKAQDEAD LG VPKKE + KDGS+++V + ESS SV + + S+ HQ+ ++ +GKD+ E+D SD EDL EADEDESDLDLAWKMLD+ARAI EK SVDTMEKVDILSALAEV+LEREDIE+S SDY KALS+LE+L EPDSR IA LNFRISLCLEIG K QEAIPYCQKAI++C SR++RLM+E ++ P + S + +Q V S+S S +K EIETLT L G+LEKKLED+Q LA NP + +L +L+ + +A+ G EKGAS +SSSR A S G+ +SPT+STAHTNG++ VTHLGVVGRGVKRV+M+S + +SSPMKK LD ++A S
Sbjct: 14 MAAPNPLETQT-SNEATIQSNTQGGTESTCNNINHHNNSNSAAEGSSAGDREKSLEFADELMEKGSKAIKDNDFSEAAECFSRALEIRVAHYGELSPECVHAYYKYGCALLYKAQDEADPLGTVPKKEGDSQQESAKDGSVKNVINGESSTASVSGNVEEEASTNHQEGAGDDGTVSSGKDQEEEDEDSDVEDLAEADEDESDLDLAWKMLDVARAIVEKHSVDTMEKVDILSALAEVALEREDIESSLSDYEKALSLLEQLVEPDSRLIAELNFRISLCLEIGSKPQEAIPYCQKAIAVCKSRVQRLMNEVKSVPESTTSSSASELDQGVISSASHSDNSVTEKGAEIETLTDLCGELEKKLEDLQQLALNPKS-ILSELLGMASAKLTGCEKGASPTVMSSSRMATADSNGDFDSPTVSTAHTNGSSGVTHLGVVGRGVKRVLMNSGTAESSPMKKPTLDSSENEAGGNTS 484
BLAST of XM_017364360.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6I231 ((Uncharacterized protein {ECO:0000313|EMBL:CCB60998.1}))
HSP 1 Score: 482.641 bits (1241), Expect = 1.176e-165
Identity = 275/468 (58.76%), Postives = 343/468 (73.29%), Query Frame = 0
Match: F6I231 ((Uncharacterized protein {ECO:0000313|EMBL:CCB60998.1}))
HSP 1 Score: 482.641 bits (1241), Expect = 1.176e-165
Identity = 275/468 (58.76%), Postives = 343/468 (73.29%), Query Frame = 0
Query: 13 EALAPLDPVETQAGSVEATIESNAVGGTESTCNTTKQPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDS-VDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDE----AQNPSALNSPVSNQSVEISSSVPL--ESAADKEKEIETLTSLLGDLEKKLEDMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAATS-GNLESPTISTA-HTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKAND 471
EALAP V S EATIESNA G TES+CN A SD + SL+ A+ELMEKG KA K+ D++EA+DC+SRALEIR +H+GEL+ ECVN Y+KYG ALLYKAQ+EAD L +P KE + +KDGS+++ + ESS S V+A ++GSS Q ++D GK++ E+D SD EDL EADEDESDLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LEREDIE S SDY KALS+LERL EPDSR IA LNFRI LCLEIG K QEAIPYCQ+AISIC SR++RL +E +++P+ +P +QS + SS+V S +DKE EIETL L +LEKKLED+Q L SNP + +L +++ +++A+A+G +KGAS + + SS+ G+A S G +SPT+STA HTNGAA VTHLGVVGRGVKRV M+S + +SSPMKK LD DK +D
Sbjct: 19 EALAPTGQVAQ--SSNEATIESNAQGDTESSCNNNADTSARPSDADREKSLEYAEELMEKGSKAVKESDFSEATDCFSRALEIRVAHHGELAFECVNTYYKYGCALLYKAQEEADPLATMPNKEAESHENSNKDGSMKNAVNDESSTAS--VNAEQDGSSNDQKVAADDDTNGKEQEEEDEESDDEDLAEADEDESDLDLAWKMLDVARAIVEKHSAADTMEKVDILSALAEVALEREDIETSLSDYQKALSILERLVEPDSRHIAELNFRICLCLEIGSKAQEAIPYCQRAISICKSRVQRLSNEIKSLSESPAISPTPELDQSAQQSSNVSQAGNSISDKESEIETLNGLASELEKKLEDLQQLVSNPTS-ILSEILGMMSAKARGADKGASPSVMGSSQIGSANSHGGFDSPTVSTASHTNGAAGVTHLGVVGRGVKRVSMNSGTAESSPMKKPPLDSSLDKGDD 481
BLAST of XM_017364360.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BVZ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547283.1}))
HSP 1 Score: 481.871 bits (1239), Expect = 1.717e-165
Identity = 277/472 (58.69%), Postives = 346/472 (73.31%), Query Frame = 0
Match: A0A5J5BVZ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547283.1}))
HSP 1 Score: 481.871 bits (1239), Expect = 1.717e-165
Identity = 277/472 (58.69%), Postives = 346/472 (73.31%), Query Frame = 0
Query: 13 EALAPLDPVETQAGSVEATIESNAVGGTESTCNTTK---QPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQN----PSALNSPVSNQSVEISSSVPL--ESAADKEKEIETLTSLLGDLEKKLEDMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAATS-GNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 474
E++AP VE S+EATIESNA GGTES+CN + A +S+ + SL+ ADELME+G KA K+ DYAEA++C+SRALEIR SHYGEL+ ECVNAY+KYG ALLYKAQ+EAD L AVPKKE D+DGS+++ + ESSA SV +A +NGSS +Q+ ++ G ED+ SD EDL EADEDE+DLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LERED+E S SDYLKALS+LERL EPDSR IA+LNFRI LCLEIG K EAIPYCQKAIS+C+SR+ RL++EA+ + +P +Q+V+ +SS +S ADKE EI TLT L G+LEKKLED++ L SNP + +L +++ +++ + + E G SSA +SSS+ GAA S G +S T STAHTN AA VT LGVVGRGVKRV+M+S +T+S +KK ALDP K N AS
Sbjct: 9 ESVAP--NVELLQTSIEATIESNAQGGTESSCNNNNNVVETSALTSEADREKSLEYADELMERGSKAVKEHDYAEATECFSRALEIRVSHYGELALECVNAYYKYGCALLYKAQEEADPLAAVPKKEGESRQDSDRDGSVKNALNCESSAASVCSNAEQNGSSINQEGAPDDVSCGNKPEEDEEESDVEDLAEADEDETDLDLAWKMLDVARAIVEKHSGDTMEKVDILSALAEVALEREDVETSLSDYLKALSILERLVEPDSRHIANLNFRICLCLEIGSKALEAIPYCQKAISVCHSRVHRLINEAKRSSGSIGSSAAPECDQTVQYASSGSQTDDSVADKEAEIATLTDLTGELEKKLEDLKQLVSNPTS-ILSEILGLVSVKVR-TENG-SSALMSSSQMGAAKSGGGFDSTTFSTAHTNWAAGVTDLGVVGRGVKRVLMNSGTTESGSIKKPALDPSLAKGNGNAS 475
BLAST of XM_017364360.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5XVK9 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4317926.1}))
HSP 1 Score: 481.871 bits (1239), Expect = 2.050e-165
Identity = 275/462 (59.52%), Postives = 340/462 (73.59%), Query Frame = 0
Match: A0A6J5XVK9 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4317926.1}))
HSP 1 Score: 481.871 bits (1239), Expect = 2.050e-165
Identity = 275/462 (59.52%), Postives = 340/462 (73.59%), Query Frame = 0
Query: 17 PLDPVETQAGSVEATIESNAVGGTESTCNT-TKQPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAG-KDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQN----PSALNSPVSNQSVEISSSVPL--ESAADKEKEIETLTSLLGDLEKKLEDMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAATS-GNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKA 469
P + +ETQ S EATI A GG ESTCN + A +SD + SL+ ADELMEKG KA KD D+ EA++C+SR+LEIR +HYGEL+P+CVNAY+KYG ALLYKAQ+E D LG VPKKE + K GS+++V + ESS S DA ++GS H++ +E +G KD+ E+ + SD EDL EADEDE+DLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LERED+E S SDY KALS+LERL EPDSR+IA LNFRI LCLEIG K +EAI YCQKAISIC SR++RLM E+++ ++ + V Q V +SS+V + DK+ EIETLT L GDLEKKLED+Q LASNP + +L +++ + +A+AKG EK SSAG SSSR GAA + G +SPT+STAHTNG + VTHLGVVGRGVKRV+MHS + +SS KK ALD DK
Sbjct: 14 PQNALETQR-SNEATITDGAQGGAESTCNNDNAEASAVTSDGDREKSLEFADELMEKGSKAIKDSDFGEATECFSRSLEIRVAHYGELAPQCVNAYYKYGCALLYKAQEETDPLGVVPKKEDESQQGSAKVGSVKNVVNGESSTASASSDAEQDGSLNHEEGAADEGASGEKDQEEEHDDSDVEDLAEADEDETDLDLAWKMLDVARAIVEKHSGDTMEKVDILSALAEVALEREDVETSLSDYQKALSILERLVEPDSRRIAELNFRICLCLEIGSKPEEAILYCQKAISICKSRVRRLMLESRSFSESTTSSAASVLEQGVTLSSTVTESDSTVTDKQAEIETLTGLSGDLEKKLEDLQQLASNPKS-ILAEILGLASAKAKGTEKSESSAGQSSSRMGAADNIGGFDSPTVSTAHTNGTSGVTHLGVVGRGVKRVLMHSGTAESSSAKKPALDSSEDKG 473
BLAST of XM_017364360.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5S6W9 ((protein HGV2 {ECO:0000313|RefSeq:XP_021809518.1}))
HSP 1 Score: 480.715 bits (1236), Expect = 5.298e-165
Identity = 275/467 (58.89%), Postives = 340/467 (72.81%), Query Frame = 0
Match: A0A6P5S6W9 ((protein HGV2 {ECO:0000313|RefSeq:XP_021809518.1}))
HSP 1 Score: 480.715 bits (1236), Expect = 5.298e-165
Identity = 275/467 (58.89%), Postives = 340/467 (72.81%), Query Frame = 0
Query: 17 PLDPVETQAGSVEATIESNAVGGTESTCNT-TKQPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAG-KDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQN----PSALNSPVSNQSVEISSSVPL--ESAADKEKEIETLTSLLGDLEKKLEDMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAATS-GNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 474
P + +ETQ S EATI A GG ESTCN + A +SD + SL+ ADELMEKG KA KD D+ EA++C+SR+LEIR +HYGEL+P+CVNAYFKYG ALLYKAQ+E D LGAVPKKE + K GS+++V + ESS S +A ++ S H++ +E +G KD+ E+ + SD EDL EADEDE+DLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LEREDIE S SDY KALS+LERL EPDSR+IA LNFRI LCLEIG K +EAI YCQKAISIC R++RLM E+++ ++ + V Q V +SS+V + DK+ EIETLT L GDLEKKLED+Q LASNP + +L +++ + +A+AKG EK SSAG SSSR GAA + G +SPT+STAHTNG + VTHLGVVGRGVKRV+MHS +++SS KK A D DK S
Sbjct: 14 PQNALETQR-SNEATITEGAQGGAESTCNNDNAEASAVTSDGDREKSLEFADELMEKGSKAIKDSDFGEATECFSRSLEIRVAHYGELAPQCVNAYFKYGCALLYKAQEETDPLGAVPKKEDESQQGSAKVGSVKNVVNGESSTASASSNAEQDESLNHEEGAADEGASGEKDQEEEQDDSDVEDLAEADEDETDLDLAWKMLDVARAIVEKHSGDTMEKVDILSALAEVALEREDIETSLSDYQKALSILERLVEPDSRRIAELNFRICLCLEIGSKPEEAILYCQKAISICKCRVRRLMLESRSFSESTTSSAASVLEQGVTLSSTVTESDSTVTDKQAEIETLTGLSGDLEKKLEDLQQLASNPKS-ILAEILGLASAKAKGTEKSESSAGQSSSRMGAADNIGGFDSPTVSTAHTNGTSGVTHLGVVGRGVKRVLMHSGTSESSSAKKPAFDSSEDKGEGNTS 478
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6PAK5 | E-Value: 2.566e-176, PID: 59.34 | (Uncharacterized protein {ECO:0000313|EMBL:PSR8801... [more] |
| A0A5B6ZYJ8 | E-Value: 6.686e-170, PID: 60.97 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4909... [more] |
| A0A2R6RLB9 | E-Value: 1.552e-168, PID: 58.92 | (Uncharacterized protein {ECO:0000313|EMBL:PSS3078... [more] |
| A0A5B7A240 | E-Value: 3.688e-168, PID: 59.28 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4909... [more] |
| A0A5J5APR9 | E-Value: 9.557e-167, PID: 59.87 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8531... [more] |
| A0A5N6QNV8 | E-Value: 7.677e-166, PID: 58.99 | (Uncharacterized protein {ECO:0000313|EMBL:KAE7999... [more] |
| F6I231 | E-Value: 1.176e-165, PID: 58.76 | (Uncharacterized protein {ECO:0000313|EMBL:CCB6099... [more] |
| A0A5J5BVZ5 | E-Value: 1.717e-165, PID: 58.69 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8547... [more] |
| A0A6J5XVK9 | E-Value: 2.050e-165, PID: 59.52 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4317... [more] |
| A0A6P5S6W9 | E-Value: 5.298e-165, PID: 58.89 | (protein HGV2 {ECO:0000313|RefSeq:XP_021809518.1})[more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |