Resource Type:
Polypeptide
Name:
XM_017364357.1
Identifier:
XM_017364357.1-protein
Sequence:
MANPRCFMDISIGGDIEGRIVIELYKDVVPKTAENFRALCTGEKGIGPVT
GVPLHFKGSCFHRIIRGFMVQGGDLSARNGTGGESIYGLKFEDENFELKH
ERKGMLSMANSGPNTNGSQFFITTTRTTHLDGKHVVFGRVIKGMGVVRSM
EHVITGDNDTPTLDVIVEDCGELPEGADDGVCNFFKDGDMYPDWPADLEE
KSDDVSWWMSTADLIKSFGNEQFKKQDYKMALKKYHKALRYVDVCWEKEE
IDQDKSNSLRKTKSQIFTNSSACKLKLGDLQGALLDADFAIRDAEDNVKA
YFRQGQAYMALNDIDAAVESFKKALALEPNDGGIKKELAAANRKIADRRD
REKKAYSRMFK
Sequence Length:
361
Sequence Checksum:
c8ce9097e8c917db88f138fdf7467012
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017364357.1, derives from mRNA, XM_017364357.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017364357.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017364357.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8AMB8 ((peptidyl-prolyl cis-trans isomerase CYP40 {ECO:0000313|RefSeq:XP_010268554.1}))
HSP 1 Score: 646.351 bits (1666), Expect = 0.000e+0
Identity = 299/361 (82.83%), Postives = 336/361 (93.07%), Query Frame = 0
Match: A0A1U8AMB8 ((peptidyl-prolyl cis-trans isomerase CYP40 {ECO:0000313|RefSeq:XP_010268554.1}))
HSP 1 Score: 646.351 bits (1666), Expect = 0.000e+0
Identity = 299/361 (82.83%), Postives = 336/361 (93.07%), Query Frame = 0
Query: 1 MANPRCFMDISIGGDIEGRIVIELYKDVVPKTAENFRALCTGEKGIGPVTGVPLHFKGSCFHRIIRGFMVQGGDLSARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTTHLDGKHVVFGRVIKGMGVVRSMEHVITGDNDTPTLDVIVEDCGELPEGADDGVCNFFKDGDMYPDWPADLEEKSDDVSWWMSTADLIKSFGNEQFKKQDYKMALKKYHKALRYVDVCWEKEEIDQDKSNSLRKTKSQIFTNSSACKLKLGDLQGALLDADFAIRDAEDNVKAYFRQGQAYMALNDIDAAVESFKKALALEPNDGGIKKELAAANRKIADRRDREKKAYSRMFK 361
M NPRCF+D+SIGG++EGRIV+ELYKDVVPKTAENFRALCTGEKGIGP TG PLH+KG FHRII+GFM+QGGDLSA +GTGGESIY LKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRT+HLDGKHVVFG+VIKGMGVVRS+EHV TGD D PT+DVI+ DCGE+PEGADDG+CNFFKDGD YPDWPADL+EK +++SWWM+ D K+FGNE +KKQDYKMAL+KY KALRY+DVCWEKE+ID++KS+ LRKTKSQIFTNSSACKLKLGDL+GALLD DFA+RD EDNVKA FRQGQAYMALND+DAAVESFKKAL LEPNDGGIKKELAAA +KIADRR++E+KAYSRMF+
Sbjct: 1 MVNPRCFLDVSIGGELEGRIVVELYKDVVPKTAENFRALCTGEKGIGPKTGAPLHYKGVRFHRIIKGFMIQGGDLSAGDGTGGESIYELKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVIKGMGVVRSIEHVTTGDGDYPTVDVIIADCGEIPEGADDGICNFFKDGDTYPDWPADLDEKPNEISWWMTAVDSAKAFGNEHYKKQDYKMALRKYRKALRYLDVCWEKEDIDEEKSSYLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGEDNVKALFRQGQAYMALNDVDAAVESFKKALELEPNDGGIKKELAAARKKIADRRNQERKAYSRMFQ 361
BLAST of XM_017364357.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7N2R4 (PPIase cyclophilin-type domain-containing protein {ECO:0000259|PROSITE:PS50072})
HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0
Identity = 296/361 (81.99%), Postives = 337/361 (93.35%), Query Frame = 0
Match: A0A6S7N2R4 (PPIase cyclophilin-type domain-containing protein {ECO:0000259|PROSITE:PS50072})
HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0
Identity = 296/361 (81.99%), Postives = 337/361 (93.35%), Query Frame = 0
Query: 1 MANPRCFMDISIGGDIEGRIVIELYKDVVPKTAENFRALCTGEKGIGPVTGVPLHFKGSCFHRIIRGFMVQGGDLSARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTTHLDGKHVVFGRVIKGMGVVRSMEHVITGDNDTPTLDVIVEDCGELPEGADDGVCNFFKDGDMYPDWPADLEEKSDDVSWWMSTADLIKSFGNEQFKKQDYKMALKKYHKALRYVDVCWEKEEIDQDKSNSLRKTKSQIFTNSSACKLKLGDLQGALLDADFAIRDAEDNVKAYFRQGQAYMALNDIDAAVESFKKALALEPNDGGIKKELAAANRKIADRRDREKKAYSRMFK 361
MANPRC++DISIGG++EGR+V+ELYKD+VPKTAENFRALCTGEKGIGP TGVPLH KGSCFHR+I+GFM+QGGD+SARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRT+HLDGKHVVFGRVIKGMGVVRS+EH T +ND PT +V+++DCGEL EG DDGVC+FFKDGD YPDWP DL+ K ++VSWWM+ D IK+FGNEQFKKQDYK AL+KY KALRY+D+CWEKE+ID+ K++SLRKTKSQIFTNSSACKLKLGDL+GALLDADFA+R+ +DNVKA FRQGQA MALNDID+AVESFKKAL LEPNDGGIKKELAAA ++IADRRD+EKKA++RMFK
Sbjct: 1 MANPRCYLDISIGGELEGRLVVELYKDIVPKTAENFRALCTGEKGIGPNTGVPLHLKGSCFHRVIKGFMIQGGDISARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSVEHTTTVENDLPTQEVVIQDCGELLEGEDDGVCDFFKDGDTYPDWPLDLDVKPEEVSWWMTAVDAIKTFGNEQFKKQDYKNALRKYRKALRYLDICWEKEDIDEGKTDSLRKTKSQIFTNSSACKLKLGDLKGALLDADFALREMDDNVKALFRQGQASMALNDIDSAVESFKKALVLEPNDGGIKKELAAAKKRIADRRDQEKKAFARMFK 361
BLAST of XM_017364357.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6JUQ2 (PPIase cyclophilin-type domain-containing protein {ECO:0000259|PROSITE:PS50072})
HSP 1 Score: 640.573 bits (1651), Expect = 0.000e+0
Identity = 295/361 (81.72%), Postives = 336/361 (93.07%), Query Frame = 0
Match: A0A2J6JUQ2 (PPIase cyclophilin-type domain-containing protein {ECO:0000259|PROSITE:PS50072})
HSP 1 Score: 640.573 bits (1651), Expect = 0.000e+0
Identity = 295/361 (81.72%), Postives = 336/361 (93.07%), Query Frame = 0
Query: 1 MANPRCFMDISIGGDIEGRIVIELYKDVVPKTAENFRALCTGEKGIGPVTGVPLHFKGSCFHRIIRGFMVQGGDLSARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTTHLDGKHVVFGRVIKGMGVVRSMEHVITGDNDTPTLDVIVEDCGELPEGADDGVCNFFKDGDMYPDWPADLEEKSDDVSWWMSTADLIKSFGNEQFKKQDYKMALKKYHKALRYVDVCWEKEEIDQDKSNSLRKTKSQIFTNSSACKLKLGDLQGALLDADFAIRDAEDNVKAYFRQGQAYMALNDIDAAVESFKKALALEPNDGGIKKELAAANRKIADRRDREKKAYSRMFK 361
MANPRC++DISIGG++EGR+V+ELYKD+VPKTAENFRALCTGEKGIGP TGVPLH KGSCFHR+I+GFM+QGGD+SARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRT+HLDGKHVVFGRVIKGMGVVRS+EH T +ND P +V+++DCGEL EG DDGVC+FFKDGD YPDWP DL+ K ++VSWWM+ D IK+FGNEQFKKQDYK AL+KY KALRY+D+CWEKE+ID+ K++SLRKTKSQIFTNSSACKLKLGDL+GALLDADFA+R+ +DNVKA FRQGQA MALNDID+AVESFKKAL LEPNDGGIKKELAAA ++IADRRD+EKKA++RMFK
Sbjct: 1 MANPRCYLDISIGGELEGRLVVELYKDIVPKTAENFRALCTGEKGIGPNTGVPLHLKGSCFHRVIKGFMIQGGDISARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSVEHTTTVENDLPIQEVVIQDCGELLEGEDDGVCDFFKDGDTYPDWPLDLDVKPEEVSWWMTAVDAIKAFGNEQFKKQDYKNALRKYRKALRYLDICWEKEDIDEGKTDSLRKTKSQIFTNSSACKLKLGDLKGALLDADFALREMDDNVKALFRQGQASMALNDIDSAVESFKKALVLEPNDGGIKKELAAAKKRIADRRDQEKKAFARMFK 361
BLAST of XM_017364357.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5YKP3 ((peptidyl-prolyl cis-trans isomerase CYP40-like {ECO:0000313|RefSeq:XP_022740906.1, ECO:0000313|RefSeq:XP_022740907.1}))
HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0
Identity = 296/361 (81.99%), Postives = 333/361 (92.24%), Query Frame = 0
Match: A0A6P5YKP3 ((peptidyl-prolyl cis-trans isomerase CYP40-like {ECO:0000313|RefSeq:XP_022740906.1, ECO:0000313|RefSeq:XP_022740907.1}))
HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0
Identity = 296/361 (81.99%), Postives = 333/361 (92.24%), Query Frame = 0
Query: 1 MANPRCFMDISIGGDIEGRIVIELYKDVVPKTAENFRALCTGEKGIGPVTGVPLHFKGSCFHRIIRGFMVQGGDLSARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTTHLDGKHVVFGRVIKGMGVVRSMEHVITGDNDTPTLDVIVEDCGELPEGADDGVCNFFKDGDMYPDWPADLEEKSDDVSWWMSTADLIKSFGNEQFKKQDYKMALKKYHKALRYVDVCWEKEEIDQDKSNSLRKTKSQIFTNSSACKLKLGDLQGALLDADFAIRDAEDNVKAYFRQGQAYMALNDIDAAVESFKKALALEPNDGGIKKELAAANRKIADRRDREKKAYSRMFK 361
M NPRC++DISIGG++EGRIV+ELYKDVVPKTAENFRALCTGEKGIGP T LH+KG FHRIIRGFM+QGGD+SA +GTGGESIYGLKFEDENFELKHERKGMLSMAN+GPNTNGSQFFITTTRT+HLDGKHVVFG+VIKGMG+VRS+EHV T D D P +VI+ DCGE+PEGADDG+ NFFKDGD+YPDWPADL++K D++SWWM D IK+FGNEQ+KKQDYK+AL+KY KALRY+DVCWE+E ID+ KS++LRKTKSQIFTNSSACKLKLGDL+GALLD DFAIRD EDNVKA+FRQGQAYMALNDIDAAVESFKKAL LEPNDGGIKKELAAA +KIADRRD+EKKAYSRMF+
Sbjct: 1 MVNPRCYLDISIGGELEGRIVVELYKDVVPKTAENFRALCTGEKGIGPKTAASLHYKGVRFHRIIRGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANTGPNTNGSQFFITTTRTSHLDGKHVVFGKVIKGMGIVRSIEHVATEDGDYPAQEVIIADCGEIPEGADDGISNFFKDGDIYPDWPADLDKKPDEISWWMKAVDSIKAFGNEQYKKQDYKIALRKYWKALRYLDVCWEQEGIDEAKSSALRKTKSQIFTNSSACKLKLGDLKGALLDTDFAIRDGEDNVKAFFRQGQAYMALNDIDAAVESFKKALDLEPNDGGIKKELAAARKKIADRRDQEKKAYSRMFQ 361
BLAST of XM_017364357.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3GF60 (Peroxidase {ECO:0000256|ARBA:ARBA00012313} (1.11.1.7 {ECO:0000256|ARBA:ARBA00012313}))
HSP 1 Score: 634.795 bits (1636), Expect = 0.000e+0
Identity = 295/361 (81.72%), Postives = 333/361 (92.24%), Query Frame = 0
Match: A0A1R3GF60 (Peroxidase {ECO:0000256|ARBA:ARBA00012313} (1.11.1.7 {ECO:0000256|ARBA:ARBA00012313}))
HSP 1 Score: 634.795 bits (1636), Expect = 0.000e+0
Identity = 295/361 (81.72%), Postives = 333/361 (92.24%), Query Frame = 0
Query: 1 MANPRCFMDISIGGDIEGRIVIELYKDVVPKTAENFRALCTGEKGIGPVTGVPLHFKGSCFHRIIRGFMVQGGDLSARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTTHLDGKHVVFGRVIKGMGVVRSMEHVITGDNDTPTLDVIVEDCGELPEGADDGVCNFFKDGDMYPDWPADLEEKSDDVSWWMSTADLIKSFGNEQFKKQDYKMALKKYHKALRYVDVCWEKEEIDQDKSNSLRKTKSQIFTNSSACKLKLGDLQGALLDADFAIRDAEDNVKAYFRQGQAYMALNDIDAAVESFKKALALEPNDGGIKKELAAANRKIADRRDREKKAYSRMFK 361
M NPRC++DISIGG++EGRIV+ELYKDVVPKTAENFRALCTGEKGIGP TG LH+KG FHRIIRGFM+QGGD SA +GTGGESIYGLKFEDENFELKHERKGMLSMAN GP+TNGSQFFITTTRT HLDGKHVVFG+VIKGMGVVRS+EHV T D D P+ +VI+ DCGE+PEGADDG+ NFFKDGD+YPDWPADL++K+D++SWWM D IK+FGNEQ+KKQ+YK AL+KY KALRY+DVCWE+E ID++KS+SLRKTKSQIFTNSSACKLKLGDL+GALLD DFAIRD EDNVKA+FRQGQAYMALNDIDAAVESFKKAL LEPNDGGIK+ELAAA +KIADRRD+EK+AYSRMF+
Sbjct: 337 MVNPRCYLDISIGGELEGRIVVELYKDVVPKTAENFRALCTGEKGIGPNTGASLHYKGVRFHRIIRGFMIQGGDFSAGDGTGGESIYGLKFEDENFELKHERKGMLSMANKGPDTNGSQFFITTTRTPHLDGKHVVFGKVIKGMGVVRSIEHVATEDGDYPSQEVIIADCGEIPEGADDGISNFFKDGDIYPDWPADLDQKTDEISWWMEAVDSIKAFGNEQYKKQNYKTALRKYWKALRYLDVCWEQEAIDEEKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAIRDGEDNVKAFFRQGQAYMALNDIDAAVESFKKALDLEPNDGGIKRELAAARKKIADRRDQEKRAYSRMFQ 697
BLAST of XM_017364357.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835MGB2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9622691.1}))
HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 290/359 (80.78%), Postives = 329/359 (91.64%), Query Frame = 0
Match: A0A835MGB2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9622691.1}))
HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 290/359 (80.78%), Postives = 329/359 (91.64%), Query Frame = 0
Query: 3 NPRCFMDISIGGDIEGRIVIELYKDVVPKTAENFRALCTGEKGIGPVTGVPLHFKGSCFHRIIRGFMVQGGDLSARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTTHLDGKHVVFGRVIKGMGVVRSMEHVITGDNDTPTLDVIVEDCGELPEGADDGVCNFFKDGDMYPDWPADLEEKSDDVSWWMSTADLIKSFGNEQFKKQDYKMALKKYHKALRYVDVCWEKEEIDQDKSNSLRKTKSQIFTNSSACKLKLGDLQGALLDADFAIRDAEDNVKAYFRQGQAYMALNDIDAAVESFKKALALEPNDGGIKKELAAANRKIADRRDREKKAYSRMFK 361
NPRC++DISIGG++EGRIVIEL+ D+VPKTAENFRALCTGEKGIGP TGVPLHFKGSCFHR+I+GFM+QGGD+SARNGTGGESIYGL+FEDENFEL HE+KGMLSMANSGPNTNGSQFFITTTRT+HLDGKHVVFG+VIKGMGVVRS+EHV T + D PTLDV+VEDCGE+PEG DDGV NFF DGD YPDWP DL EK D VSWW+S D K+FGNEQ+KKQDYKMA++KY KALRY+D+CWEKE+IDQ+KS+ LRKTKSQIFTNSSACKLK+GDLQGALLDADFA+R+ E N KA FRQGQ MALND+D+AVESFKKAL LEPNDGGIKKE AAA +KI+DRRD+EKKA+S+MF+
Sbjct: 4 NPRCYLDISIGGELEGRIVIELFSDIVPKTAENFRALCTGEKGIGPNTGVPLHFKGSCFHRVIKGFMIQGGDISARNGTGGESIYGLQFEDENFELTHEKKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVIKGMGVVRSVEHVSTSEGDVPTLDVVVEDCGEIPEGVDDGVNNFFSDGDSYPDWPTDLVEKPDQVSWWISAVDATKAFGNEQYKKQDYKMAIRKYRKALRYLDICWEKEDIDQEKSSYLRKTKSQIFTNSSACKLKIGDLQGALLDADFALREGEANAKALFRQGQVQMALNDVDSAVESFKKALELEPNDGGIKKEFAAARKKISDRRDKEKKAFSKMFQ 362
BLAST of XM_017364357.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RL54 ((Peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:PSS30761.1}))
HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 292/361 (80.89%), Postives = 331/361 (91.69%), Query Frame = 0
Match: A0A2R6RL54 ((Peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:PSS30761.1}))
HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 292/361 (80.89%), Postives = 331/361 (91.69%), Query Frame = 0
Query: 1 MANPRCFMDISIGGDIEGRIVIELYKDVVPKTAENFRALCTGEKGIGPVTGVPLHFKGSCFHRIIRGFMVQGGDLSARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTTHLDGKHVVFGRVIKGMGVVRSMEHVITGDNDTPTLDVIVEDCGELPEGADDGVCNFFKDGDMYPDWPADLEEKSDDVSWWMSTADLIKSFGNEQFKKQDYKMALKKYHKALRYVDVCWEKEEIDQDKSNSLRKTKSQIFTNSSACKLKLGDLQGALLDADFAIRDAEDNVKAYFRQGQAYMALNDIDAAVESFKKALALEPNDGGIKKELAAANRKIADRRDREKKAYSRMFK 361
MANPRCF+D+SIGG++EGRIV+ELY+DVVPKTAENFRALCTGEKGIGP TG PLH KGSCFHRII+G M+QGGD+SA NG+GGESIYGLKFEDENF+LKHERKG+LSMAN+GP+TNGSQFFITTTRT+HLDGKHVVFG+V KGMGVVRS+EHV TG+ND PTLDVI+ DCGE+PEG DDGV NFFKDGDMYPDWPADL+ K D++SWW+S D IK+FGNEQFKKQDYKMA+KKY KAL Y+DVCWEKE+ID+ KS+SLRKTKSQIFTNSSACKLKLGD++GALLD D A+RD EDNVKA FRQGQAY ALND+DAAVESFKKAL LEPNDG IKKE AA +KIADRRD+EKK++ RMF+
Sbjct: 1 MANPRCFLDVSIGGELEGRIVVELYRDVVPKTAENFRALCTGEKGIGPNTGAPLHLKGSCFHRIIKGLMIQGGDISAGNGSGGESIYGLKFEDENFDLKHERKGILSMANAGPDTNGSQFFITTTRTSHLDGKHVVFGKVTKGMGVVRSVEHVNTGENDYPTLDVIIADCGEIPEGEDDGVSNFFKDGDMYPDWPADLDAKPDEISWWISAVDSIKAFGNEQFKKQDYKMAIKKYRKALLYLDVCWEKEDIDEQKSSSLRKTKSQIFTNSSACKLKLGDIKGALLDTDLAMRDGEDNVKALFRQGQAYTALNDVDAAVESFKKALELEPNDGHIKKEFAAVKKKIADRRDQEKKSFRRMFQ 361
BLAST of XM_017364357.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TKI4 ((peptidyl-prolyl cis-trans isomerase CYP40-like isoform X1 {ECO:0000313|RefSeq:XP_027078552.1}))
HSP 1 Score: 632.869 bits (1631), Expect = 0.000e+0
Identity = 291/361 (80.61%), Postives = 334/361 (92.52%), Query Frame = 0
Match: A0A6P6TKI4 ((peptidyl-prolyl cis-trans isomerase CYP40-like isoform X1 {ECO:0000313|RefSeq:XP_027078552.1}))
HSP 1 Score: 632.869 bits (1631), Expect = 0.000e+0
Identity = 291/361 (80.61%), Postives = 334/361 (92.52%), Query Frame = 0
Query: 1 MANPRCFMDISIGGDIEGRIVIELYKDVVPKTAENFRALCTGEKGIGPVTGVPLHFKGSCFHRIIRGFMVQGGDLSARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTTHLDGKHVVFGRVIKGMGVVRSMEHVITGDNDTPTLDVIVEDCGELPEGADDGVCNFFKDGDMYPDWPADLEEKSDDVSWWMSTADLIKSFGNEQFKKQDYKMALKKYHKALRYVDVCWEKEEIDQDKSNSLRKTKSQIFTNSSACKLKLGDLQGALLDADFAIRDAEDNVKAYFRQGQAYMALNDIDAAVESFKKALALEPNDGGIKKELAAANRKIADRRDREKKAYSRMFK 361
M NPRC++DISIGG++EGRIV+ELY DVVPKTAENFRALCTGEKGIGP TGVPLHFKGSCFHR+IRGFM+QGGD+SA NGTGGESIYGLKFEDENF+LKHERKGMLSMANSGP+TNGSQFFITTT+T+HLDGKHVVFGRVIKG+GV+RS+EHV T + PTLDV++ DCGE+PEGADDG NFFKDGD YPDWPADL K DD+SWWM+ D +K+FGNE+FKKQD+KMA +KY KALRY++ CWE +++D++KS+SL+KTKSQIFTN SACKL+LGDL+GALLDADFAIRDA+DNVKA++RQGQAYMALNDIDAAVESFKKAL LEPNDGGIKKELAAA +K+ADRRDREKK YSRMF+
Sbjct: 1 MGNPRCYLDISIGGELEGRIVVELYSDVVPKTAENFRALCTGEKGIGPHTGVPLHFKGSCFHRVIRGFMIQGGDISAGNGTGGESIYGLKFEDENFKLKHERKGMLSMANSGPDTNGSQFFITTTQTSHLDGKHVVFGRVIKGLGVIRSIEHVTTTEAYYPTLDVMIADCGEIPEGADDGTSNFFKDGDCYPDWPADLSMKPDDISWWMTAVDSVKAFGNERFKKQDFKMAHRKYCKALRYLNTCWEMDDVDEEKSDSLKKTKSQIFTNCSACKLRLGDLKGALLDADFAIRDADDNVKAFYRQGQAYMALNDIDAAVESFKKALDLEPNDGGIKKELAAARKKVADRRDREKKTYSRMFQ 361
BLAST of XM_017364357.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9FXT3 (PPIase cyclophilin-type domain-containing protein {ECO:0000259|PROSITE:PS50072})
HSP 1 Score: 632.484 bits (1630), Expect = 0.000e+0
Identity = 295/361 (81.72%), Postives = 330/361 (91.41%), Query Frame = 0
Match: A0A2N9FXT3 (PPIase cyclophilin-type domain-containing protein {ECO:0000259|PROSITE:PS50072})
HSP 1 Score: 632.484 bits (1630), Expect = 0.000e+0
Identity = 295/361 (81.72%), Postives = 330/361 (91.41%), Query Frame = 0
Query: 1 MANPRCFMDISIGGDIEGRIVIELYKDVVPKTAENFRALCTGEKGIGPVTGVPLHFKGSCFHRIIRGFMVQGGDLSARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTTHLDGKHVVFGRVIKGMGVVRSMEHVITGDNDTPTLDVIVEDCGELPEGADDGVCNFFKDGDMYPDWPADLEEKSDDVSWWMSTADLIKSFGNEQFKKQDYKMALKKYHKALRYVDVCWEKEEIDQDKSNSLRKTKSQIFTNSSACKLKLGDLQGALLDADFAIRDAEDNVKAYFRQGQAYMALNDIDAAVESFKKALALEPNDGGIKKELAAANRKIADRRDREKKAYSRMFK 361
MANPRC++D+SIGG++EGRIV+ELYKDVVPKTAENFRALCTGEKGIGP TGVPLHFKG FHRII+GFM+QGGD+SA +G+GGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRT+HLDGKHVVFGRVIKGMGVVRS+EH TG+ DTPT DV++ DCGE+PEGADDG NFF DGD PDWPADL+ K DD+ WWM D IKSFGNE +KKQDYK AL+KY KALRY+DVCWEK++ID++KS+SLRKTKSQIFTNSSACKLKLGDL+GALLD DFA+RD EDNVKA FRQGQAYMALNDID+AVESFKKAL LEPNDGGIKKEL+ A +KIADR D+EK+AYSRMF+
Sbjct: 1 MANPRCYLDLSIGGELEGRIVVELYKDVVPKTAENFRALCTGEKGIGPHTGVPLHFKGVGFHRIIKGFMIQGGDISAGDGSGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSVEHASTGEGDTPTQDVVIADCGEIPEGADDGTSNFFNDGDSQPDWPADLDTKPDDILWWMKAVDNIKSFGNEYYKKQDYKTALRKYRKALRYLDVCWEKDDIDEEKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGEDNVKALFRQGQAYMALNDIDSAVESFKKALDLEPNDGGIKKELSVARKKIADRHDQEKRAYSRMFQ 361
BLAST of XM_017364357.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A3A9Y8 ((Peptidyl-prolyl cis-trans isomerase CYP40 {ECO:0000313|EMBL:KAE8701214.1}))
HSP 1 Score: 632.484 bits (1630), Expect = 0.000e+0
Identity = 293/361 (81.16%), Postives = 333/361 (92.24%), Query Frame = 0
Match: A0A6A3A9Y8 ((Peptidyl-prolyl cis-trans isomerase CYP40 {ECO:0000313|EMBL:KAE8701214.1}))
HSP 1 Score: 632.484 bits (1630), Expect = 0.000e+0
Identity = 293/361 (81.16%), Postives = 333/361 (92.24%), Query Frame = 0
Query: 1 MANPRCFMDISIGGDIEGRIVIELYKDVVPKTAENFRALCTGEKGIGPVTGVPLHFKGSCFHRIIRGFMVQGGDLSARNGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTTHLDGKHVVFGRVIKGMGVVRSMEHVITGDNDTPTLDVIVEDCGELPEGADDGVCNFFKDGDMYPDWPADLEEKSDDVSWWMSTADLIKSFGNEQFKKQDYKMALKKYHKALRYVDVCWEKEEIDQDKSNSLRKTKSQIFTNSSACKLKLGDLQGALLDADFAIRDAEDNVKAYFRQGQAYMALNDIDAAVESFKKALALEPNDGGIKKELAAANRKIADRRDREKKAYSRMFK 361
M NPRC++DISI G++EGRIV+ELYKD+VPKTAENFRALCTGEKGIGP T LH+KG FHRIIRGFM+QGGD+SA +GTGGESIYGLKFEDENFELKHERKGMLSMAN GPNTNGSQFFITTTRT+HLDGKHVVFG+V+KGMGVVRS+EHV T D D PT DVI+EDCGE+PEGADDGV NFFKDGD+YPDWPADL++K++D++WWM D IK+FGNEQ+ KQDYK+AL+KY KAL Y+DVCW+ E IDQ+KS+SLRKTKSQIFTNSSACKLKLGDL+GALLDADFAIRD EDNVKA+FRQGQA+MALNDIDAAV+SFKKAL LEPNDGGIKKELAAA +K+ADRRD+EK+AYSRMF+
Sbjct: 1 MVNPRCYLDISIAGELEGRIVVELYKDIVPKTAENFRALCTGEKGIGPNTAASLHYKGVRFHRIIRGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANMGPNTNGSQFFITTTRTSHLDGKHVVFGKVLKGMGVVRSIEHVTTEDGDYPTQDVIIEDCGEIPEGADDGVSNFFKDGDIYPDWPADLDKKTNDITWWMMAVDSIKAFGNEQYMKQDYKIALRKYLKALLYLDVCWDLEAIDQEKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDADFAIRDGEDNVKAFFRQGQAHMALNDIDAAVQSFKKALELEPNDGGIKKELAAARKKVADRRDQEKRAYSRMFQ 361
| Match Name | Stats | Description |
|---|---|---|
| A0A1U8AMB8 | E-Value: 0.000e+0, PID: 82.83 | (peptidyl-prolyl cis-trans isomerase CYP40 {ECO:00... [more] |
| A0A6S7N2R4 | E-Value: 0.000e+0, PID: 81.99 | PPIase cyclophilin-type domain-containing protein ... [more] |
| A0A2J6JUQ2 | E-Value: 0.000e+0, PID: 81.72 | PPIase cyclophilin-type domain-containing protein ... [more] |
| A0A6P5YKP3 | E-Value: 0.000e+0, PID: 81.99 | (peptidyl-prolyl cis-trans isomerase CYP40-like {E... [more] |
| A0A1R3GF60 | E-Value: 0.000e+0, PID: 81.72 | Peroxidase {ECO:0000256|ARBA:ARBA00012313} (1.11.1... [more] |
| A0A835MGB2 | E-Value: 0.000e+0, PID: 80.78 | (Uncharacterized protein {ECO:0000313|EMBL:KAF9622... [more] |
| A0A2R6RL54 | E-Value: 0.000e+0, PID: 80.89 | (Peptidyl-prolyl cis-trans isomerase {ECO:0000313|... [more] |
| A0A6P6TKI4 | E-Value: 0.000e+0, PID: 80.61 | (peptidyl-prolyl cis-trans isomerase CYP40-like is... [more] |
| A0A2N9FXT3 | E-Value: 0.000e+0, PID: 81.72 | PPIase cyclophilin-type domain-containing protein ... [more] |
| A0A6A3A9Y8 | E-Value: 0.000e+0, PID: 81.16 | (Peptidyl-prolyl cis-trans isomerase CYP40 {ECO:00... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |