XM_017364181.1

Resource Type: 
Polypeptide
Name: 
XM_017364181.1
Identifier: 
XM_017364181.1-protein
Sequence: 
MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGS
ISNSSSSAVLIEDGSDDEDDDGVGKKRSSRIFGFSVTDEPAVVTRQFFPV
NESSESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSGEKAADFTHPLKK
SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAY
DRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRG
SSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKC
NGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIG
DGRATNQHTSSTQFEWKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETL
QLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQNQLTSSSNGGRNGGNERG
ESYMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERPKNWLQKNGFQTV
MRPS
Sequence Length: 
504
Sequence Checksum: 
5bf504a22dd8b2761c36d31ea4c6c7a6
View location in JBrowse: 
DCARv2_Chr7:30212744..30216386-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017364181.1, derives from mRNA, XM_017364181.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017364181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017364181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438FKK4 ((Floral homeotic protein APETALA 2 {ECO:0000313|EMBL:RVW60529.1}))

HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 340/537 (63.31%), Postives = 389/537 (72.44%), Query Frame = 0
 
Query:    1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSS--AVLIEDGSDDEDDDGVGKKRSSRIFGFSVTDE---PAVVTRQFFPVNESSESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSG----EKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIGDGR---ATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN---------------QLTSSSNGGR---NGGNERGESYMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERP-KNWLQKNGFQTVMRPS 504
            MW+LNDSP +R D          D+ EGCS+     +   +D KGKRVGS+SN +SS  AV+IEDGSD+ED +   +KRSS+IFGFSVT E      VTRQFFP+ ES       GGA   A FPRAHWVGVKFC SEP+ +      K+ + + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL DYE+DLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGKEAVTNFDPSIY+NELN    SS   ADHNLDLSLGGSASKQ    +GD       +QH+    FE  W+ R  RPK ++QQE  ++  D+ RR+G N+MET+QL S+T+LQS ++ +P EM+RY QF +A E Q                Q  SSSNGGR   NGG+        +L   H QW++  PQ+ A AAASSGFP  M RP + W QKNGF +++RPS
Sbjct:    1 MWDLNDSPDQRRD----------DESEGCSSQKTSVDS--IDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHEDEGEPPVTRQFFPMEESEMGTTSCGGA---AAFPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELN----SSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTMDQHSVGMSFEADWRSRGFRPKFNLQQEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYRYGQFRRAGETQMLHILPPQLSSPNYQIQFPSSSNGGRIAVNGGD-------LSLATNHQQWQSGPPQLFATAAASSGFPPQMIRPNQQWPQKNGFHSLIRPS 511
[Close]
BLAST of XM_017364181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: C1KBJ2 ((AP2 {ECO:0000313|EMBL:QOE83970.1}) (Transcription factor APETALA2 {ECO:0000313|EMBL:ACO52508.1}))

HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 340/537 (63.31%), Postives = 389/537 (72.44%), Query Frame = 0
 
Query:    1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSS--AVLIEDGSDDEDDDGVGKKRSSRIFGFSVTDE---PAVVTRQFFPVNESSESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSG----EKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIGDGR---ATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN---------------QLTSSSNGGR---NGGNERGESYMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERP-KNWLQKNGFQTVMRPS 504
            MW+LNDSP +R D          D+ EGCS+     +   +D KGKRVGS+SN +SS  AV+IEDGSD+ED +   +KRSS+IFGFSVT E      VTRQFFP+ ES       GGA   A FPRAHWVGVKFC SEP+ +      K+ + + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL DYE+DLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGKEAVTNFDPSIY+NELN    SS   ADHNLDLSLGGSASKQ    +GD       +QH+    FE  W+ R  RPK ++QQE  ++  D+ RR+G N+MET+QL S+T+LQS ++ +P EM+RY QF +A E Q                Q  SSSNGGR   NGG+        +L   H QW++  PQ+ A AAASSGFP  M RP + W QKNGF +++RPS
Sbjct:    1 MWDLNDSPDQRRD----------DESEGCSSQKTSVDS--IDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHEDEGEPPVTRQFFPMEESEMGTTSCGGA---AAFPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELN----SSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTMDQHSVGMSFEADWRSRGFRPKFNLQQEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYRYGQFRRAGETQMLHILPPQLSSPNYQIQFPSSSNGGRIAVNGGD-------LSLATNHQQWQSGPPQLFATAAASSGFPPQMIRPNQQWPQKNGFHSLIRPS 511
[Close]
BLAST of XM_017364181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H4H7 ((Uncharacterized protein {ECO:0000313|EMBL:CCB47049.1}))

HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 339/537 (63.13%), Postives = 386/537 (71.88%), Query Frame = 0
 
Query:    1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSS--AVLIEDGSDDEDDDGVGKKRSSRIFGFSVTDE---PAVVTRQFFPVNESSESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSG----EKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIGDGR---ATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN---------------QLTSSSNGGR---NGGNERGESYMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERP-KNWLQKNGFQTVMRPS 504
            MW+LNDSP +R D          D+ EGCS+     +   +D KGKRVGS+SN +SS  AV+IEDGSD+ED +   +KRSS+IFGFSVT E      VTRQFFP+ ES       GGA   A FPRAHWVGVKFC SEP+ +      K+ + + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL DYE+DLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGKEAVTNFDPSIY+NELN    SS   ADHNLDLSLGGSASKQ    +GD       +QH+    FE  W+ R  RPK    QE  ++  D+ RR+G N+MET+QL S+T+LQS ++ +P EM+RY QF +A E Q                Q  SSSNGGR   NGG+        +L   H QW++  PQ+ A AAASSGFP  M RP + W QKNGF +++RPS
Sbjct:    1 MWDLNDSPDQRRD----------DESEGCSSQKTSVDS--IDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHEDEGEPPVTRQFFPMEESEMGTTSCGGA---AAFPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELN----SSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTMDQHSVGMSFEADWRSRGFRPK----QEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYRYGQFRRAGETQMLHILPPQLSSPNYQIQFPSSSNGGRIAVNGGD-------LSLATNHQQWQSGPPQLFATAAASSGFPPQMIRPNQQWPQKNGFHSLIRPS 507
[Close]
BLAST of XM_017364181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BZ25 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547120.1}))

HSP 1 Score: 556.214 bits (1432), Expect = 0.000e+0
Identity = 343/537 (63.87%), Postives = 398/537 (74.12%), Query Frame = 0
 
Query:    1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDEDDDGVGKKRSSRIFGFSVT--------DEPAVVTRQFFPVNESSESVEGGGGANT--AAGFPRAHWVGVKFCHSEPVGSGE-KAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELN-PTESSSSQPADHNLDLSLGGSASKQ--REHGIGDGR--ATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQ---------------NQLTSSSNGGRNGGNERGESYMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERPKNWLQKNGFQTVMRPS 504
            MW+LNDSP +R D          ++ EGCS+P++  +    D KGKRVGS+SNSSSSA++IE+GS++ED +   +KRSS+IFGFSVT        +    VTRQFFPV +S    + GGG     A   PRAHWVGVKFC SEP+G G  K+ + + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL DYEDDLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGK+AVTNFDPSIY+NE++  T    S  AD NLDLSLG SA KQ  RE G GD +  A + H++S  FE  W+++  RPK ++QQE  RN+ D+ RR G ++ ET+QL S T+LQS SS + +EMHRY QF+KA EPQ                Q  SSSNGGR G N    S    L+ G  QW+++ PQ+ A AAASSGFPQ + RP++W+QKNGF  VMRPS
Sbjct:    1 MWDLNDSPDQRRD----------EESEGCSSPVDEYD----DDKGKRVGSLSNSSSSALVIEEGSEEEDGERGRRKRSSKIFGFSVTHNNDNCSSESELPVTRQFFPVEDSETGTKSGGGGGCVGATTLPRAHWVGVKFCQSEPLGGGVGKSIEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENEIDSSTADCPSNVADQNLDLSLGNSAMKQNSREMG-GDVQNPAMDLHSASMPFEVDWRNQGFRPKLNLQQEPHRNEIDAHRRAGFHETETMQLLSQTHLQSPSSLKANEMHRYGQFVKAGEPQMFHMFQPQLSSSSFLTQFPSSSNGGRFGANGGDLS----LSTGDQQWQSNPPQLFATAAASSGFPQQINRPQHWMQKNGFHYVMRPS 518
[Close]
BLAST of XM_017364181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PAC1 ((Floral homeotic protein like {ECO:0000313|EMBL:PSR87964.1}))

HSP 1 Score: 541.191 bits (1393), Expect = 0.000e+0
Identity = 332/531 (62.52%), Postives = 378/531 (71.19%), Query Frame = 0
 
Query:    1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDEDDDGVGKKRS-SRIFGFSVT----------DEPAVVTRQFFPVNESSESVEGGGGANTAAGFPRAHWVGVKFCHSE-PVGSGEKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIGDG-RATNQHTSSTQFEWKDREIRPKPSMQQE-FIRNKFDSGRRDGLNQMETLQLSSNTNLQS--SSSFRPSEMHRYEQF-----MKASEPQNQLTSSSNGGRNGGNERGESYMYNLNHGHHQWRTSSP---QVMAAAAASSGFPQ---VMERPKNWLQKNGFQTVMRPS 504
            MW+LNDSP         D    +D+ E CS    +G+    D KGKRVGS+SNSSSSAV        +D+DG G+KRS S+IFGFSVT          D P  VT QFFP ++      GGGGA   A FPRAHWVGV+FC SE PV +  K  + T PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAH+AARAYDRAAIKFRGVEADINF+L DYE+DLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGKEAVTNFDPSIY++ELN TE  S +P+DHNLDLSLG SASKQ+ H I D  R T+     T  +W++RE +PK + QQE FIR    S RRDG N+ +T+QL S T++    +SSF+P+EM RY +F     M     Q Q  SSS  G NG    G+  +    H + Q    +P   QV A+AAASSGFPQ   +   P+NWLQ+NGF   MRPS
Sbjct:    1 MWDLNDSP---------DPTTRDDESEVCS----YGD----DDKGKRVGSVSNSSSSAV--------DDEDGGGRKRSGSKIFGFSVTRPDDSFSSESDPP--VTHQFFPASD------GGGGA---ANFPRAHWVGVRFCQSEAPVAAAGKFTETTQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVEADINFTLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELNSTE-CSGKPSDHNLDLSLGSSASKQKSHDIADDQRHTSMPIEVT--DWRNREFQPKINFQQEQFIR----SDRRDGYNETDTMQLLSQTHINQTPTSSFKPNEMQRYGKFAHELHMFPPHYQVQCPSSSTNG-NG----GKLSLSTSEHQNWQLNIVNPPPGQVFASAAASSGFPQQKIITTAPQNWLQQNGFHFSMRPS 483
[Close]
BLAST of XM_017364181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7G8AU71 ((AP2/ERF transcription factor {ECO:0000313|EMBL:QNI23740.1}))

HSP 1 Score: 526.939 bits (1356), Expect = 0.000e+0
Identity = 334/539 (61.97%), Postives = 387/539 (71.80%), Query Frame = 0
 
Query:    1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDEDDDGVGKKRSSRIFGFSVT---------DEPAVVTRQFFPVNESSESVEGGGGANT--AAGFPRAHWVGVKFCHSEP-VGSGEKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIG---DGRATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN---------------QLTSSSNGGR---NGGNERGESYMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERPKNWLQKNGFQTVMRPS 504
            MW+LNDSP +R D         ++  EGCS+P++ G     D KGKRVGS+SNSSSSAV+IE+GS++E+      KRSS+IFGFSV+          EP V TRQFFPV +S    + GGG     A   PRAHWVGVKFC SEP VG   K+ + + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL DYEDDLKQM NLTKEEFVHVLRRQS+GFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGK+AVTNFD SIY+NE++ +   +   A  NLDLSLG SA +Q     G        N H++S  FE  W +R  R K ++ QE  RN+ D+ RR+G N+ ET+QL S T++QS +S + +EMHRYEQFMKA EPQ                Q  SSSNGGR   NGG+       ++L+    QW+ S+PQ+ A AAASSGFPQ + RP+ WLQKNGF  + RPS
Sbjct:    1 MWDLNDSPDQRRD---------DEYSEGCSSPVDDGV---DDDKGKRVGSMSNSSSSAVVIEEGSEEEEGVRGRGKRSSKIFGFSVSHNSDNGSSESEPPV-TRQFFPVEDSETGAQSGGGVGCVGAINLPRAHWVGVKFCQSEPLVGGVGKSVEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEDDLKQMSNLTKEEFVHVLRRQSSGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDSSIYENEIDSSAEITGIAAYRNLDLSLGNSALEQDNRKFGGDVQNPEMNLHSASMPFEVDWSNRGFRHKLNLPQEPHRNEIDARRREGFNETETMQLLSQTHIQSPNSPKANEMHRYEQFMKAGEPQMLHMFQPQLSSSTFQIQFPSSSNGGRLGVNGGD-------HSLSTSDQQWQ-SNPQLFATAAASSGFPQQINRPQQWLQKNGFHYLTRPS 518
[Close]
BLAST of XM_017364181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UVB7 ((Uncharacterized protein {ECO:0000313|EMBL:OAY35492.1}))

HSP 1 Score: 522.702 bits (1345), Expect = 1.452e-180
Identity = 331/531 (62.34%), Postives = 382/531 (71.94%), Query Frame = 0
 
Query:    1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDED---DDGVGKKRSSRIFGFSVT------DEPAVVTRQFFPVNESSESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSGEKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIGDGR---ATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEP----------QNQLTSSSNGGRNGGNERGESYMYNLNHGHHQWRTSSP---QVMAAAAASSGFPQVMERPKNWLQKNGFQTVMRPS 504
            MW+LNDSP          D   +D+ EGCS+     +G   D KGKRVGS+SNSSSSAV+IEDGSD+ED   + G  KKRS +IFGFSVT      +   +VTRQFFPV +       GGG    AGFPRAHWVGVKFC SE + S  K+A+ + PLKKSRRGPRSRSSQYRGVT+YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFS+ DYEDDLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGKEAVTNFDPSIY+NELN +ESS +  ADHNLDLSLG S SKQ   G  + R     +Q ++   FE  W++R IRPK ++ +    +  D  RR+G  + ET+QL S T++QS      +E  RY QF +  E           Q Q  SSSNGGR G +       Y+ +H   QW++  P   Q++A AAASSGFPQ +  P+NWLQKNGF +++RPS
Sbjct:    1 MWDLNDSP----------DQTRDDESEGCSSQKTSLDG--EDEKGKRVGSMSNSSSSAVVIEDGSDEEDGSGERGRIKKRSGKIFGFSVTRDNSSMESDPLVTRQFFPVEDQEMGATSGGGGGVGAGFPRAHWVGVKFCQSESLAS-PKSAEVSQPLKKSRRGPRSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSSESSGN-AADHNLDLSLGNSGSKQNSVGFSNDRQNAGMDQQSAPMAFEADWRNRGIRPKLNLSRS---DDSDDHRREGYCETETMQLLSQTHIQSPG----NEGQRYGQFKRPGENQMFHGFSPNYQMQFPSSSNGGRIGSDLSLSPSDYHHHHQQRQWQSRPPPPHQLVANAAASSGFPQQIRTPQNWLQKNGFHSILRPS 510
[Close]
BLAST of XM_017364181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZKX6 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44664.1}))

HSP 1 Score: 513.457 bits (1321), Expect = 7.002e-177
Identity = 339/535 (63.36%), Postives = 392/535 (73.27%), Query Frame = 0
 
Query:    1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDEDDD-GVGKKRSSRIFGFSVTD------EPAVVTRQFFPVNESS-ESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSG-EKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGG-SASKQREHGIG---DGRATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN---------------QLTSSSNGGRNGGNERGESYMYNLNHGHHQWRTSSP-QVMAAAAASSGFPQVMERPKNWLQKNGFQTVMRPS 504
            MWNLNDSP +R         + +D+ EGCS+P++   G+  D KGKRVGS+SNSSSSAV+IE+GS+DED + G  K+ SS+IFGFSVTD      EP V TRQFFP+  S   +  GGGG   A  FPRAHWVGVKFC SEP+  G   +++ + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL +YE+DLK+M NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGK+AVTNFDPSIY+NEL+ TE   +  A  NLDLSLG  S  KQ    +G      A +Q ++S  FE  W+++  RPK   Q    RN+ D+ RRDG N+ ET+QL S T+LQS SS + +EMHRY QF+KA EPQ                Q  SSSNGGR G N    S    L+    QW+++ P Q+ A AAASSGFPQ + RP++WLQ NGF  +MRPS
Sbjct:    1 MWNLNDSPDQR---------RVDDESEGCSSPVD---GVEYD-KGKRVGSVSNSSSSAVVIEEGSEDEDGERGRRKRMSSKIFGFSVTDNCSSESEPPV-TRQFFPLEYSEMGTTPGGGGGCGATNFPRAHWVGVKFCQSEPLAGGVANSSEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEEYEEDLKKMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENELDSTECPGN-AAGQNLDLSLGSTSVLKQNSRELGGEIQNPAMDQRSASMPFEVDWRNQGFRPKKETQ----RNEIDARRRDGFNETETMQLLSQTHLQSPSSLKANEMHRYGQFVKAGEPQMLHMFPAQLSSSNFQIQFPSSSNGGRLGANGGDLS----LSTSDQQWQSNPPHQLFATAAASSGFPQQINRPQHWLQ-NGFHYLMRPS 511
[Close]
BLAST of XM_017364181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZM57 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44671.1}))

HSP 1 Score: 509.99 bits (1312), Expect = 1.866e-175
Identity = 338/541 (62.48%), Postives = 385/541 (71.16%), Query Frame = 0
 
Query:    1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDEDDD-GVGKKRSSRIFGFSVT---------DEPAVVTRQFFPVNESSESVEGGGGANT--AAGFPRAHWVGVKFCHSEP---VGSGEKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGG-SASKQREHGIG---DGRATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN---------------QLTSSSNGGRNGGNERGESYMYNLNHGHHQWRTSSP-QVMAAAAASSGFPQVMERPKNWLQKNGFQTVMRPS 504
            MW+LNDSP +R D          D+ EGCS+P++         +GKRVGS+SNSSSSAV+IE+GSD+ED + G  +KRSS IFGFSVT          EP V TRQFFPV +S    + GGG     A   PRAHWVGVKFC SEP    G   K+ + + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL DYE+DLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGK+AVTNFDPSIY+NEL+ TE   +  A  NLDLSLG  S  KQ    +G      A +Q ++S  FE  W+++  RPK   Q    RN+ D+ RRDG N+ ET+QL S T+LQS SS + +EMHRY QF+KA EPQ                Q  SSSNGGR G N    S    L+    QW+++ P Q+ A AAASSGFPQ + RP++WLQ NGF  +MRPS
Sbjct:    1 MWDLNDSPDQRRD----------DESEGCSSPVD-------GVEGKRVGSVSNSSSSAVVIEEGSDEEDGERGSRRKRSSMIFGFSVTHNDDNCSSESEPPV-TRQFFPVEDSEAGTKSGGGGGCVGATNLPRAHWVGVKFCQSEPRGGGGGVGKSTEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENELDSTECPGN-AAGQNLDLSLGSTSVLKQNSRELGGEIQNPAMDQRSASMPFEVDWRNQGFRPKKETQ----RNEIDARRRDGFNETETMQLLSQTHLQSPSSLKANEMHRYGQFVKAGEPQMLHMFPAQLSSSNFQIQFPSSSNGGRLGANGGDLS----LSTSDQQWQSNPPHQLFATAAASSGFPQQINRPQHWLQ-NGFHYLMRPS 513
[Close]
BLAST of XM_017364181.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1L6CB26 ((AP2/ERF domain-containing transcription factor {ECO:0000313|EMBL:APQ47383.1}))

HSP 1 Score: 508.064 bits (1307), Expect = 1.589e-174
Identity = 323/546 (59.16%), Postives = 376/546 (68.86%), Query Frame = 0
 
Query:    1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDEDDD----GVGKKRSSRIFGFSVTDEPAV-----VTRQFFPVNE----SSESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSGEKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESS-SSQPADHNLDLSLGGSASKQREHGIGDGRATN----QHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN----------QLTSSSNGGRNGGNERGES------------YMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERPKNWLQKNGFQTVMRPS 504
            MW+LNDSP +R D          D+ EGCS+     +G   D KGKRVGS+SNSSSSAVLIEDGS+DED      G  KKR+S+IFGFSV  E ++     VTRQFFPV +    ++  V  GGG     G+PRAHWVGVKFC SE      K+ + + PLKKSRRGPRSRSSQYRGVT+YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINF++ DYE+DLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGKEAVTNFDPSIY+NE+N +ESS ++  ADHNLDLSLG S  KQ   G  +    N    QH++S   E  W++R IRPK ++   F  +  D   R+G  +MET QL S T++Q+      +E  RY QF ++ E Q           Q  SSSNGGR G +    S              +              Q++A+AAASSGFPQ +  P+NWLQKNGF +++RPS
Sbjct:    1 MWDLNDSPDQRRD----------DESEGCSSQKTSFDG--EDEKGKRVGSVSNSSSSAVLIEDGSEDEDGSAERGGRIKKRTSKIFGFSVPHEESIGSDPPVTRQFFPVEDQEMGATSGVGDGGGGGGGTGYPRAHWVGVKFCQSESSLGSPKSVEVSQPLKKSRRGPRSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENEVNSSESSGNAAAADHNLDLSLGNSVPKQNIVGFSNNDRENVGMDQHSASMPLEADWRNRGIRPKLNL---FRNSDIDDHGREGYCEMETRQLLSQTHIQAPV----NEAQRYGQFRRSGETQVFHGFSPNYQIQFPSSSNGGRIGSDLSLSSGDHFHHHHQHQQRQWQYGPPPPPHPPHHHQLVASAAASSGFPQQIRTPQNWLQKNGFHSLLRPS 527
Match NameStatsDescription
A0A438FKK4E-Value: 0.000e+0, PID: 63.31(Floral homeotic protein APETALA 2 {ECO:0000313|EM... [more]
C1KBJ2E-Value: 0.000e+0, PID: 63.31(AP2 {ECO:0000313|EMBL:QOE83970.1}) (Transcription... [more]
F6H4H7E-Value: 0.000e+0, PID: 63.13(Uncharacterized protein {ECO:0000313|EMBL:CCB4704... [more]
A0A5J5BZ25E-Value: 0.000e+0, PID: 63.87(Uncharacterized protein {ECO:0000313|EMBL:KAA8547... [more]
A0A2R6PAC1E-Value: 0.000e+0, PID: 62.52(Floral homeotic protein like {ECO:0000313|EMBL:PS... [more]
A0A7G8AU71E-Value: 0.000e+0, PID: 61.97(AP2/ERF transcription factor {ECO:0000313|EMBL:QN... [more]
A0A2C9UVB7E-Value: 1.452e-180, PID: 62.34(Uncharacterized protein {ECO:0000313|EMBL:OAY3549... [more]
A0A5B6ZKX6E-Value: 7.002e-177, PID: 63.36(Putative transcription factor APETALA2 isoform X1... [more]
A0A5B6ZM57E-Value: 1.866e-175, PID: 62.48(Putative transcription factor APETALA2 isoform X1... [more]
A0A1L6CB26E-Value: 1.589e-174, PID: 59.16(AP2/ERF domain-containing transcription factor {E... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.