Resource Type:
Polypeptide
Name:
XM_017360816.1
Identifier:
XM_017360816.1-protein
Sequence:
MSSDSDSSRNSFDIDDLSQIQARCRELRKEKDSLNASQSQSFQLIKRLEI
HVKTLLGARAEDKKRIQELERELSNCSQELDYLQDQLNSRNTEVQSLGDR
VHTLELKLADVENLELMGRQMTEELEKSNSDVLFLNQELENKEIELQQSN
LRIESLEESILSVSLDYQCEIESMKFELMTFEQSCFEASKIQEEAAQENG
RLDQLNQDLEVQIQDCREVIKCLSEENKELREKLIISESKATEICMTIEE
KFPDMLNKDGHPLPSELKNDARWDVGRVSFSDLEDKFEKMSSSIIKYEAR
VRQLKEELREQKFKANEEAEDLAQEMAELRYQMNGLLEEECKRRAHVEQI
SIQRIAELEAQKWNGRYLIIVADYR
Sequence Length:
375
Sequence Checksum:
ac81c444dcba3680d8821dbe21ecefb0
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017360816.1, derives from mRNA, XM_017360816.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017360816.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017360816.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BIP5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542526.1}))
HSP 1 Score: 372.859 bits (956), Expect = 2.119e-125
Identity = 219/367 (59.67%), Postives = 271/367 (73.84%), Query Frame = 0
Match: A0A5J5BIP5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8542526.1}))
HSP 1 Score: 372.859 bits (956), Expect = 2.119e-125
Identity = 219/367 (59.67%), Postives = 271/367 (73.84%), Query Frame = 0
Query: 13 DIDDLSQIQARCRELRKEKDSLNASQSQSFQLIKRLEIHVKTLLGARAEDKKRIQELERELSNCSQELDYLQDQLNSRNTEVQSLGDRVHTLELKLADVENLELMGRQMTEELEKSNSDVLFLNQELENKEIELQQSNLRIESLEESILSVSLDYQCEIESMKFELMTFEQSCFEASKIQEEAAQENGRLDQLNQDLEVQIQDCREVIKCLSEENKELREKLIISESKATEICMTIEEKFPDML-NKDGHPL-----PSELKND------------ARWDVGRVSFSDLEDKFEKMSSSIIKYEARVRQLKEELREQKFKANEEAEDLAQEMAELRYQMNGLLEEECKRRAHVEQISIQRIAELEAQ 361
DI++L QI RC+ELRKEK+ L SQSQSF+LI+RLE+HVKTL AR EDKK IQ+LEREL NC QE+DYLQDQLN+RNTEV +G+ VH+LELKLA++ENLE ++ EEL++SNS+ LFL QELE+KE+ELQ+S IE LEESI SV+L+YQCE+ESMK +LM EQ+CFEA K QE+ +QE R++ L QDLE+Q QD ++VI+CL +ENKE REKL SE A +EE+F L +KD L SEL+ D +R V S +D+++K EKMS I +YE V+QLKEELRE+K KA EEAEDLAQEMAELRYQ+ LLEEECKRRA +EQIS+QRI LEAQ
Sbjct: 14 DIEELLQIGTRCKELRKEKNMLRESQSQSFELIRRLELHVKTLSDARTEDKKHIQDLERELRNCYQEIDYLQDQLNARNTEVNCMGEHVHSLELKLAEMENLEEKVVRLKEELKRSNSERLFLMQELESKEVELQKSTSCIEKLEESISSVALEYQCELESMKLDLMALEQNCFEAKKFQEDTSQEKARMNGLIQDLELQFQDAQKVIECLDKENKESREKLETSEMNAKVFRQKMEEQFEKWLEDKDKAELNVESVSSELEKDMSTCGNILGPLISRLAVV-TSDADVKNKMEKMSCQIHEYELLVKQLKEELREEKLKAKEEAEDLAQEMAELRYQITCLLEEECKRRACIEQISLQRITVLEAQ 379
BLAST of XM_017360816.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7SI51 ((Uncharacterized protein {ECO:0000313|EMBL:CBI15161.3}))
HSP 1 Score: 367.466 bits (942), Expect = 7.464e-123
Identity = 209/380 (55.00%), Postives = 274/380 (72.11%), Query Frame = 0
Match: D7SI51 ((Uncharacterized protein {ECO:0000313|EMBL:CBI15161.3}))
HSP 1 Score: 367.466 bits (942), Expect = 7.464e-123
Identity = 209/380 (55.00%), Postives = 274/380 (72.11%), Query Frame = 0
Query: 12 FDIDDLSQIQARCRELRKEKDSLNASQSQSFQLIKRLEIHVKTLLGARAEDKKRIQELERELSNCSQELDYLQDQLNSRNTEVQSLGDRVHTLELKLADVENLELMGRQMTEELEKSNSDVLFLNQELENKEIELQQSNLRIESLEESILSVSLDYQCEIESMKFELMTFEQSCFEASKIQEEAAQENGRLDQLNQDLEVQIQDCREVIKCLSEENKELREKLIISESKATEICMTIEEKFPDML-NKDGH-----------------------------PLPSELKNDARWDVGRVSFSDLEDKFEKMSSSIIKYEARVRQLKEELREQKFKANEEAEDLAQEMAELRYQMNGLLEEECKRRAHVEQISIQRIAELEAQ 361
+DI+DL QI+ RC++L++E + L SQS+SF+LI+RLE+HV+TL AR+ED+K IQELEREL NCSQE+DYLQDQLN+R+ EV+ LG+ VH+LELKLAD +NLE M ++ +EL++SNS+ + L QELENKE+ELQ S+L I+ LEESI SV+L++QCE+ESMK E++T EQSCFEA K+Q+EA++E +++ L Q+ +VQ+QD +++I+CL +ENKELR KL SE A + I+E + L NKD PL +L A DVG L++K EKMS I YE V+QLKEELRE+K KA EEAEDLAQEMAELRYQ+ G+LEEECKRRA +EQ S+QRIAELEAQ
Sbjct: 29 YDIEDLLQIETRCKQLKRETNMLRESQSESFELIRRLELHVRTLSEARSEDEKHIQELERELRNCSQEIDYLQDQLNARDAEVKCLGEHVHSLELKLADKDNLEDMVGRLMQELKRSNSECMLLMQELENKEVELQMSSLCIDKLEESISSVTLEFQCEMESMKLEMITLEQSCFEAKKLQDEASEEKTKMNGLIQEFQVQLQDAQKMIECLDKENKELRGKLKTSEMDAILLRQKIKEHSEEWLENKDESELKTQSSSGELESKFNLSTEMSTSAEVLVPLFPKLAVSATSDVG------LKEKMEKMSHQIHGYELLVKQLKEELREEKLKAKEEAEDLAQEMAELRYQITGMLEEECKRRACIEQASLQRIAELEAQ 402
BLAST of XM_017360816.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G3U2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5933956.1}))
HSP 1 Score: 363.614 bits (932), Expect = 1.002e-121
Identity = 221/363 (60.88%), Postives = 274/363 (75.48%), Query Frame = 0
Match: A0A7J7G3U2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5933956.1}))
HSP 1 Score: 363.614 bits (932), Expect = 1.002e-121
Identity = 221/363 (60.88%), Postives = 274/363 (75.48%), Query Frame = 0
Query: 12 FDIDDLSQIQARCRELRKEKDSLNASQSQSFQLIKRLEIHVKTLLGARAEDKKRIQELERELSNCSQELDYLQDQLNSRNTEVQSLGDRVHTLELKLADVENLELMGRQMTEELEKSNSDVLFLNQELENKEIELQQSNLRIESLEESILSVSLDYQCEIESMKFELMTFEQSCFEASKIQEEAAQENGRLDQLNQDLEVQIQDCREVIKCLSEENKELREKLIISESKATEICMTIEEKFPDMLNKDG-----HPLPSELKNDAR--WDV-GRVSF-----SDLEDKFEKMSSSIIKYEARVRQLKEELREQKFKANEEAEDLAQEMAELRYQMNGLLEEECKRRAHVEQISIQRIAELEAQ 361
F+I++L QI+ RC+ELRKEKD L SQSQSF+LI+ LE H KTL ARAED+K IQELEREL NCSQE+DYLQDQLN+RN EV LG+ VH+LELKLA++E+LE ++ EEL+ SNS+ L L QELE+KE+E++QS IE LEESI VSL+YQCEIESMK +L EQ+CFEA K +EEAA+E ++++L QD E QIQD ++VI+CL+EENKELREKL SE A C +EE+F + L DG PL EL+ D D+ G + F + L+DK +KMS I++YE ++QLKEELR +KFKA EEAEDLAQEMAELRYQ+ GLLEEE KRRA +EQIS+QRIAELEAQ
Sbjct: 13 FEIEELLQIRTRCQELRKEKDMLRDSQSQSFELIRSLEAHAKTLYKARAEDEKHIQELERELKNCSQEIDYLQDQLNARNEEVYCLGEHVHSLELKLANMESLEEKVGRLREELKWSNSERLILMQELESKEVEIRQSAACIEKLEESISPVSLEYQCEIESMKLDL---EQNCFEAKKFKEEAAREKLKMNELIQDFECQIQDAQKVIECLNEENKELREKLETSEKNARVFCQKMEEQFEEWLENDGPQLNTQPLSHELEKDVSTCGDILGPLLFRLAVDAALKDKMDKMSCQILEYELLLKQLKEELRAEKFKAKEEAEDLAQEMAELRYQITGLLEEERKRRACIEQISLQRIAELEAQ 372
BLAST of XM_017360816.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UK56 ((Uncharacterized protein {ECO:0000313|EMBL:OAY31108.1}))
HSP 1 Score: 354.369 bits (908), Expect = 4.674e-118
Identity = 201/370 (54.32%), Postives = 260/370 (70.27%), Query Frame = 0
Match: A0A2C9UK56 ((Uncharacterized protein {ECO:0000313|EMBL:OAY31108.1}))
HSP 1 Score: 354.369 bits (908), Expect = 4.674e-118
Identity = 201/370 (54.32%), Postives = 260/370 (70.27%), Query Frame = 0
Query: 11 SFDIDDLSQIQARCRELRKEKDSLNASQSQSFQLIKRLEIHVKTLLGARAEDKKRIQELERELSNCSQELDYLQDQLNSRNTEVQSLGDRVHTLELKLADVENLELMGRQMTEELEKSNSDVLFLNQELENKEIELQQSNLRIESLEESILSVSLDYQCEIESMKFELMTFEQSCFEASKIQEEAAQENGRLDQLNQDLEVQIQDCREVIKCLSEENKELREKLIISESKATEICMTIEE----KFPDMLNKDGHPLPSELKNDAR---------------WDVGRVSFSDLEDKFEKMSSSIIKYEARVRQLKEELREQKFKANEEAEDLAQEMAELRYQMNGLLEEECKRRAHVEQISIQRIAELEAQ 361
+ D+D+L QI RCR+LRKEK+ LN SQS SF+LI+RLE+HVK+LL ARAED+K IQ+LEREL NCSQ++DYLQDQ+N+RN EV SLG+ VH LELKLAD++NL++ Q+ E+E+S+++ L QEL++KE+ELQ+S L IE LEESI S++LD QCEIESMK ++M EQ+CFEA + Q+E E +D+L ++ E+++ D E+I CL +ENKELREK + SE A + IEE + LN SE KN R + S L+ K E+MS I +YE V+QLKE+LRE+K KA EEA+DLAQEMAELRYQM LLEEECKRRA +E S+QRIAELEAQ
Sbjct: 10 TIDVDELLQIGTRCRDLRKEKEMLNGSQSHSFELIRRLELHVKSLLEARAEDRKLIQKLERELLNCSQQIDYLQDQINARNAEVYSLGEHVHDLELKLADMDNLQVKVGQLQGEIERSDTECFLLTQELKSKELELQKSVLCIEKLEESISSLTLDSQCEIESMKLDMMALEQACFEARRDQKETTLEKATMDKLIKEQEIRVYDAEEIIDCLEKENKELREKFVTSEMHARQFLQKIEEWQEKEDKSQLNIQHQLSESESKNMLREKSACGELLGQLFSKLAIVLAPESSLKKKMERMSHQITEYEVLVKQLKEDLREEKLKAKEEADDLAQEMAELRYQMTSLLEEECKRRACIEHASLQRIAELEAQ 379
BLAST of XM_017360816.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BEH7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8541008.1}))
HSP 1 Score: 371.318 bits (952), Expect = 9.692e-118
Identity = 217/375 (57.87%), Postives = 266/375 (70.93%), Query Frame = 0
Match: A0A5J5BEH7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8541008.1}))
HSP 1 Score: 371.318 bits (952), Expect = 9.692e-118
Identity = 217/375 (57.87%), Postives = 266/375 (70.93%), Query Frame = 0
Query: 12 FDIDDLSQIQARCRELRKEKDSLNASQSQSFQLIKRLEIHVKTLLGARAEDKKRIQELERELSNCSQELDYLQDQLNSRNTEVQSLGDRVHTLELKLADVENLELMGRQMTEELEKSNSDVLFLNQELENKEIELQQSNLRIESLEESILSVSLDYQCEIESMKFELMTFEQSCFEASKIQEEAAQENGRLDQLNQDLEVQIQDCREVIKCLSEENKELREKLIISESKATEICMTIEEKF--------PDMLN---------KD--------GHPLPSELKNDARWDVGRVSFSDLEDKFEKMSSSIIKYEARVRQLKEELREQKFKANEEAEDLAQEMAELRYQMNGLLEEECKRRAHVEQISIQRIAELEAQ 361
FDI++L QI RCRELRKEKD L SQSQSF+LI+R+ +H KTL EDKKRIQELEREL NC QE+DYLQDQLN+RNTEV LG+ VH+LELKL D+ENLE + +EL+++NS+ LFL Q+LE+KE+ELQ+S IE LEESI SV+L+YQCEIESMK +LM EQSC EA + QEE AQE R++ L QDLE++ QD ++VI+CL +ENKE+REKL SE +EE+F D LN KD G P+ +R + S + L+DK EKMS I +YE V+QLKEELRE+K KA EEAEDLAQEMAELRY++ GLLEEECKRR+ +EQIS+QRIAELEAQ
Sbjct: 610 FDIEELLQIGTRCRELRKEKDMLRDSQSQSFELIRRMGLHAKTLSEVHTEDKKRIQELERELRNCYQEIDYLQDQLNARNTEVNYLGEHVHSLELKLTDMENLEEKVVRFKKELKRANSERLFLMQQLESKEVELQKSTSCIEKLEESISSVALEYQCEIESMKLDLMALEQSCSEAKRFQEENAQEKARMNGLIQDLELRFQDAQKVIECLVKENKEMREKLETSEMNTRVFHQKMEEQFEERSEDKDKDQLNNQSSSSGLEKDMSNCGDIVGPPI-------SRLALVGASDAGLQDKMEKMSCQIHEYEQLVKQLKEELREEKLKAKEEAEDLAQEMAELRYRITGLLEEECKRRSCIEQISLQRIAELEAQ 977
BLAST of XM_017360816.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6P2Z1 ((Uncharacterized protein {ECO:0000313|EMBL:PRQ16290.1}))
HSP 1 Score: 352.443 bits (903), Expect = 3.694e-117
Identity = 206/369 (55.83%), Postives = 261/369 (70.73%), Query Frame = 0
Match: A0A2P6P2Z1 ((Uncharacterized protein {ECO:0000313|EMBL:PRQ16290.1}))
HSP 1 Score: 352.443 bits (903), Expect = 3.694e-117
Identity = 206/369 (55.83%), Postives = 261/369 (70.73%), Query Frame = 0
Query: 12 FDIDDLSQIQARCRELRKEKDSLNASQSQSFQLIKRLEIHVKTLLGARAEDKKRIQELERELSNCSQELDYLQDQLNSRNTEVQSLGDRVHTLELKLADVENLELMGRQMTEELEKSNSDVLFLNQELENKEIELQQSNLRIESLEESILSVSLDYQCEIESMKFELMTFEQSCFEASKIQEEAAQENGRLDQLNQDLEVQIQDCREVIKCLSEENKELREKLIISESKATEICMTIEEKF-PDMLNKDGHPLPSELKNDARWDV-----GRV---SFS----------DLEDKFEKMSSSIIKYEARVRQLKEELREQKFKANEEAEDLAQEMAELRYQMNGLLEEECKRRAHVEQISIQRIAELEAQ 361
FDI++L QI RCREL+KEKD L SQSQSF LI+ L++H+K+L R EDKK+IQ LE+EL NCSQE+DYLQDQLN+R+TEV L + VH+LELKLA ENL++ ++ +EL+KS S+ LFL QELE+KE+ELQ SNL IE LEES+ S+SL+ QCEIESMK +++ EQSC EA+K+QEE +E R+++L Q+LEVQ QD R+ CL ENKELREKL SE+ C +E+ D L SEL+ + + G V FS D+ K ++MS I +YE V+QLKEELRE+K KA EEAEDLAQEMAELRYQ+ LLE+ECKRRA++EQ S+QRIAELEAQ
Sbjct: 14 FDIEELLQIGTRCRELKKEKDMLKESQSQSFGLIRSLDVHMKSLSEFRTEDKKQIQMLEKELKNCSQEIDYLQDQLNARDTEVTFLEEHVHSLELKLAGTENLQVTVDRLRDELKKSYSECLFLMQELESKEVELQNSNLCIEKLEESVSSMSLESQCEIESMKLDMLALEQSCLEANKVQEETVREKTRMNELIQELEVQCQDARKTADCLDMENKELREKLDASETNTRIFCQRVEKLLEEDRFEFKSESLLSELEGRHTYSIDMSTCGEVLESLFSKLAMVLAPDADMIVKMKEMSHQIHEYELLVKQLKEELREEKLKAKEEAEDLAQEMAELRYQLTVLLEDECKRRAYIEQASLQRIAELEAQ 382
BLAST of XM_017360816.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RPU6 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8124408.1}))
HSP 1 Score: 351.673 bits (901), Expect = 5.834e-117
Identity = 219/401 (54.61%), Postives = 278/401 (69.33%), Query Frame = 0
Match: A0A5N6RPU6 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8124408.1}))
HSP 1 Score: 351.673 bits (901), Expect = 5.834e-117
Identity = 219/401 (54.61%), Postives = 278/401 (69.33%), Query Frame = 0
Query: 1 MSSDSDS-SRNSFDIDDLSQIQARCRELRKEKDSLNASQSQSFQLIKRLEIHVKTLLGARAEDKKRIQELERELSNCSQELDYLQDQLNSRNTEVQSLGDRVHTLELKLADVENLELMGRQMTEELEKSNSDVLFLNQELENKEIELQQSNLRIESLEESILSVSLDYQCEIESMKFELMTFEQSCFEASKIQEEAAQENGRLDQLNQDLEVQIQDCREVIKCLSEENKELREKLIISESKATEICMTIEEKFPDMLNKD-GHP---LP-SELKNDARWD---------VGR-------VSFSDLED--KFEKMSSSIIKYEARVRQLKEELREQKFKANEEAEDLAQEMAELRYQMNGLLEEECKRRAHVEQISIQRIAELEA--QKWNGRYLIIVADYR 375
MS + S S NS DI++L QI RCRELRKEKD L SQSQSF+LI+RLE+HV +L A EDKK IQ+LE+EL NCSQE+DYLQDQLN RNTEV L + VH LELKL D+E+L+ +++EEL++S+ + LFL QELE+KE+ELQ+S L I LEESI S++L+ QCEIESM+ ++M +QSCFEA KIQEE+ +E R+++L Q+LEVQ QD +++IKCL +ENK+L+EKL SE+ A IEE NK+ H +P S L+N +G VS +D++ K EKMS + +YE V+QLKEELRE+K KA EEAEDLAQEMAELRYQ+ GLLEEECKRRA +E S+ RIAELEA QK N + V R
Sbjct: 1 MSHHTRSDSENSSDIEELLQIGTRCRELRKEKDRLKDSQSQSFELIRRLELHVNSLSKAHTEDKKHIQKLEKELLNCSQEIDYLQDQLNVRNTEVNYLEEDVHNLELKLVDMEDLQEKVNRLSEELKRSDLERLFLIQELESKEVELQESTLYIVKLEESISSMALESQCEIESMRLDIMALDQSCFEAKKIQEESVKEKDRMNELIQELEVQFQDAQQIIKCLDKENKDLKEKLDTSETNARVFYQRIEEWLA---NKERSHQESEMPMSTLENKMSMSKEMSTCGEVLGPLLSKLVVVSGADVDSRTKMEKMSRQVQEYELLVKQLKEELREEKLKAKEEAEDLAQEMAELRYQITGLLEEECKRRACIEHASLLRIAELEAQVQKENRKSFAAVRHLR 398
BLAST of XM_017360816.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PCU3 ((ELKS/Rab6-interacting/CAST family member 1 like {ECO:0000313|EMBL:PSR89190.1}))
HSP 1 Score: 349.362 bits (895), Expect = 5.667e-116
Identity = 210/367 (57.22%), Postives = 265/367 (72.21%), Query Frame = 0
Match: A0A2R6PCU3 ((ELKS/Rab6-interacting/CAST family member 1 like {ECO:0000313|EMBL:PSR89190.1}))
HSP 1 Score: 349.362 bits (895), Expect = 5.667e-116
Identity = 210/367 (57.22%), Postives = 265/367 (72.21%), Query Frame = 0
Query: 13 DIDDLSQIQARCRELRKEKDSLNASQSQSFQLIKRLEIHVKTLLGARAEDKKRIQELERELSNCSQELDYLQDQLNSRNTEVQSLGDRVHTLELKLADVENLELMGRQMTEELEKSNSDVLFLNQELENKEIELQQSNLRIESLEESILSVSLDYQCEIESMKFELMTFEQSCFEASKIQEEAAQENGRLDQLNQDLEVQIQDCREVIKCLSEENKELREKLIISESKATEICMTIEEKFPDMLN-KDGHPLPSE-----LKND------------ARWDVGRVSFSDLEDKFEKMSSSIIKYEARVRQLKEELREQKFKANEEAEDLAQEMAELRYQMNGLLEEECKRRAHVEQISIQRIAELEAQ 361
DI++L +I RCRELRKEKD L SQSQSF+LI+RLE+HVKTL ARA+++KRIQELEREL NC +E+DYLQDQLN+RN EV L +RVH+LELK+ DV++LE ++TEEL SN++ L L +ELE+K++E Q S IE LEESI SV+L+YQCEIESM+ +LM EQS FEA K QEE AQE R++ L QDLE+QIQ+ R+ + L++EN +LREKL SE + C IEE+F L KDG L SE L+ D +R V V+ +D +DK + MS I YE V+QLKEE++ +K KA EEAED+AQEMAELRYQ+ GLLEEE KRRA +EQIS+QRI+ELEAQ
Sbjct: 14 DIEELLEIGTRCRELRKEKDMLRGSQSQSFELIRRLELHVKTLSEARADNEKRIQELERELKNCFEEIDYLQDQLNARNEEVCCLSERVHSLELKVTDVDSLEEKVGRLTEELNWSNAERLILIKELESKDVEFQNSASCIEKLEESISSVALEYQCEIESMRLDLMALEQSSFEAKKFQEETAQETTRMNWLIQDLELQIQNERKNTESLNKENDDLREKLDESEINSRIFCQKIEEQFDRWLEMKDGSQLNSESLSRVLERDISTCGDILGPLLSRQAVLGVTDADFKDKMDIMSRQIHGYEVLVKQLKEEVKTEKLKAKEEAEDVAQEMAELRYQITGLLEEERKRRACIEQISLQRISELEAQ 380
BLAST of XM_017360816.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834Z559 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8399570.1}))
HSP 1 Score: 351.288 bits (900), Expect = 1.275e-115
Identity = 210/384 (54.69%), Postives = 259/384 (67.45%), Query Frame = 0
Match: A0A834Z559 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8399570.1}))
HSP 1 Score: 351.288 bits (900), Expect = 1.275e-115
Identity = 210/384 (54.69%), Postives = 259/384 (67.45%), Query Frame = 0
Query: 2 SSDSDSSRNSFDIDDLSQIQARCRELRKEKDSLNASQSQSFQLIKRLEIHVKTLLGARAEDKKRIQELERELSNCSQELDYLQDQLNSRNTEVQSLGDRVHTLELKLADVENLELMGRQMTEELEKSNSDVLFLNQELENKEIELQQSNLRIESLEESILSVSLDYQCEIESMKFELMTFEQSCFEASKIQEEAAQENGRLDQLNQDLEVQIQDCREVIKCLSEENKELREKLIISESKATEICMTIEEKFPDMLNKDGH----------PLPSELKND--------------ARWDVGRVSFSDLEDKFEKMSSSIIKYEARVRQLKEELREQKFKANEEAEDLAQEMAELRYQMNGLLEEECKRRAHVEQISIQRIAELEAQ 361
SS + SFD+++ QI RCR+LRKEKD L SQSQS +LI+RL++ VKTL AR+EDKK IQ+ EREL NCSQE++YLQDQLN RN EV L D VH+LELKLA+ NL ++ EEL KSNS+ L L QELE+KE+ELQ S L IE LEESI SV+LD QCEIESMK ++M EQ+CFEA K QEE QE R+ L ++ +V+ QD R++I CL +ENKELREKL SE A C +EE +L G L SEL ++ +V + DL+D+ EKMS I + E V+QLK+ELRE+K KANEEAEDL QEMAELRYQ+ G+LE+ECKRRA +EQ S+QRIAELEAQ
Sbjct: 11 SSFKNDGDYSFDVEEFVQIGTRCRQLRKEKDMLRESQSQSAELIRRLQLDVKTLSEARSEDKKYIQDFERELRNCSQEIEYLQDQLNLRNIEVNYLSDHVHSLELKLAESGNLHEKLSRLREELMKSNSECLLLTQELESKEVELQNSILCIEKLEESISSVALDSQCEIESMKLDMMALEQTCFEAEKFQEETTQEKARMSGLIEEFDVRFQDARKMIGCLEKENKELREKLEKSERNARIFCQKVEEHLEKLLENKGRLRFNIQSSRSKLESELLVSKEMCTCEEVLGPLLSKLEVLAAADEDLKDEMEKMSRQIHESELLVKQLKDELREEKSKANEEAEDLTQEMAELRYQITGMLEQECKRRAFIEQASLQRIAELEAQ 394
BLAST of XM_017360816.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LFM5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7134738.1}))
HSP 1 Score: 349.362 bits (895), Expect = 1.870e-115
Identity = 213/370 (57.57%), Postives = 271/370 (73.24%), Query Frame = 0
Match: A0A834LFM5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7134738.1}))
HSP 1 Score: 349.362 bits (895), Expect = 1.870e-115
Identity = 213/370 (57.57%), Postives = 271/370 (73.24%), Query Frame = 0
Query: 10 NSFDIDDLSQIQARCRELRKEKDSLNASQSQSFQLIKRLEIHVKTLLGARAEDKKRIQELERELSNCSQELDYLQDQLNSRNTEVQSLGDRVHTLELKLADVENLELMGRQMTEELEKSNSDVLFLNQELENKEIELQQSNLRIESLEESILSVSLDYQCEIESMKFELMTFEQSCFEASKIQEEAAQENGRLDQLNQDLEVQIQDCREVIKCLSEENKELREKLIISESKATEICMTIEEKFPDMLNK-DGHPLPSE-LKND----------------ARWDVGRVSFSDLEDKFEKMSSSIIKYEARVRQLKEELREQKFKANEEAEDLAQEMAELRYQMNGLLEEECKRRAHVEQISIQRIAELEAQ 361
NSFD+++L QI+ RCRELRKEKD L SQ QSF+LI+RLE+HVKTL ARAED+KRIQELEREL+NCSQE+DYLQDQLN+RN E LG+ VH+LELK+A+ +LE ++EEL SNS+ LFL QELE+KE+ELQ S I+ LEES+ SV+L+YQCEIESMK ++ T E+ FE K+QEE A+E R++ L QDLE+QIQ+ +E+I L +ENKELR K S+ A C IEE+F + L + DG PL ++ L D +R V + +DL K +KMSS I +YE V+QLKEE++E+K KA +EAEDLAQEMAELRYQ++GLLEEE KRRA +EQIS+QRIA+LEAQ
Sbjct: 10 NSFDVEELLQIETRCRELRKEKDMLRDSQPQSFELIRRLELHVKTLSEARAEDEKRIQELERELNNCSQEIDYLQDQLNARNEENYCLGEHVHSLELKIAETGSLEETVGSLSEELNWSNSERLFLMQELESKEVELQNSASCIKKLEESVSSVALEYQCEIESMKLDMTTLERRFFEVKKLQEEDAREKVRMNDLIQDLEIQIQNDQEIIGNLEKENKELRFKFETSQRNAEVFCQKIEEEFKEWLERNDGPPLSNQSLSRDLEENISTCGNILGPLLSRLPVVGATDADLRGKMDKMSSQIREYELLVKQLKEEVKEEKSKARDEAEDLAQEMAELRYQLSGLLEEEHKRRACIEQISLQRIAQLEAQ 379
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5BIP5 | E-Value: 2.119e-125, PID: 59.67 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8542... [more] |
| D7SI51 | E-Value: 7.464e-123, PID: 55.00 | (Uncharacterized protein {ECO:0000313|EMBL:CBI1516... [more] |
| A0A7J7G3U2 | E-Value: 1.002e-121, PID: 60.88 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5933... [more] |
| A0A2C9UK56 | E-Value: 4.674e-118, PID: 54.32 | (Uncharacterized protein {ECO:0000313|EMBL:OAY3110... [more] |
| A0A5J5BEH7 | E-Value: 9.692e-118, PID: 57.87 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8541... [more] |
| A0A2P6P2Z1 | E-Value: 3.694e-117, PID: 55.83 | (Uncharacterized protein {ECO:0000313|EMBL:PRQ1629... [more] |
| A0A5N6RPU6 | E-Value: 5.834e-117, PID: 54.61 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8124... [more] |
| A0A2R6PCU3 | E-Value: 5.667e-116, PID: 57.22 | (ELKS/Rab6-interacting/CAST family member 1 like {... [more] |
| A0A834Z559 | E-Value: 1.275e-115, PID: 54.69 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8399... [more] |
| A0A834LFM5 | E-Value: 1.870e-115, PID: 57.57 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7134... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |